organic compounds
2-Amino-4-(4-chlorophenyl)-6-(pyrrolidin-1-yl)pyridine-3,5-dicarbonitrile
aDepartment of Physics, Sri Ram Engineering College, Chennai 602 024, India, bDepartment of Chemistry, Pondichery University, Pondichery 605 014, India, and cDepartment of Physics, RKM Vivekananda College (Autonomous), Chennai 600 004, India
*Correspondence e-mail: ksethusankar@yahoo.co.in
In the title compound, C17H14ClN5, two C atoms and their attached H atoms of the pyrrolidine ring are disordered over two sets of sites with an occupancy ratio of 0.638 (10):0.362 (10). The benzene and pyridine rings are inclined to one another by 60.57 (8)°. In the crystal, the amino group forms an N—H⋯N hydrogen bond with one of the cyano groups, linking the molecules into chains along [010].
Related literature
For a similar compound, see: Inglebert et al. (2011). For related structures, see: Chao et al. (1975); Kvick et al. (1976). For bond-length data, see: Atoji & Lipscomb (1953). For puckering parameters, see: Cremer & Pople (1975).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536812009051/rk2335sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812009051/rk2335Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812009051/rk2335Isup3.cml
A mixture of 4–chlorobenzaldehyde (2 mmoL, 0.28 g), malononitrile (3 mmoL, 0.198 g), pyrrolidine (1.5 mmoL, 0.1 g) was stirred without any solvent at room temperature. A solid appeared immediately which has dissolved in a minimum amount (3 ml) of ethanol and the solution was refluxed until completion of the reaction (monitered by TLC). The reaction mixture was cooled. Ethanol was evaporated under reduced pressure and the residue was extracted with dicholoromethane (3×10 ml). Evaporation of solvent left the crude solid which was subjected to silica gel
[25:75 ethyl acetate/hexane] and the product was recrysallized from dichloromethane.H atoms attached to C atoms were positioned geometrically and constrained to ride on their parent atoms, with C—H = 0.93Å (aromatic H) and C—H = 0.97Å (methylene H) Uiso(H) = 1.2Ueq(C). H atoms of amino group were located from difference Fourier map and refined freely.
Pyridine and its derivatives play an important role in hetrocyclic chemistry. Pyridine containing compounds are the new class of anti–HIV molecules, which particularly inhibit RNA dependent DNA polymerase or reverse transcriptace and thus act as non–nucleoside reverse transcriptace inhibitors. They also exhibit cytotoxic, anti–cancer, anti–tumour and anti–bacterial activity.
The pyrrolidine ring adopts a twisted conformation in both the major and minor conformers (occupancy factors of 0.638 (10)/0.362 (10) respectively). Puckering parameters (Cremer & Pople, 1975) are q2 and φ2, of 0.422 (6)Å and 273.9 (4)° for the major conformer (N5/C15/C16/C17/C18) and 0.469 (10)Å and 86.4 (6)°, respectively, for the minor conformer (N5/C15/C16'/C17'/C18).
The bond lengths of the nitrile groups attached to pyridine ring are typical (N4≡C11 = 1.148 (2)Å and C9≡N3 = 1.142 (2)Å). The nitrile groups form angles with parent C atoms: 177.1 (2)° and 174.5 (2)°. The sum angles around the atom C12 are slightly less 360° (real 358.0 (2)°) - deformed by the amino group, as seen in other aminopyridines (Chao et al., 1975; Kvick et al., 1976). This behaviour characterizes the resonance of the N2 lone pair with the aromatic ring. The effect can also be verified by the shortening of the C12—N2 bond (1.345 (2)Å) relative to a normal single C—N bond (1.483Å for C—N in methaneamine (Atoji & Lipscomb, 1953).
The amino group is planar with the pyridine ring as indicated by the torsion angle N2—C12—N1—C13 = 179.75 (16)°. The chlorine atom attached at C1 deviates by -0.0817 (3)Å from the mean plane of the phenyl ring. The title structure exhibits structural similarities with the previously reported structure (Inglebert et al., 2011).
In the
the classical intermolecular N2—H2B···N4i hydrogen bonds link the molecules into chains along the b axis. Symmetry code: (i) x, y+1, z.For a similar compound, see: Inglebert et al. (2011). For related structures, see: Chao et al. (1975); Kvick et al. (1976). For bond-length data, see: Atoji & Lipscomb (1953). For puckering parameters, see: Cremer & Pople (1975).
Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).C17H14ClN5 | Z = 2 |
Mr = 323.77 | F(000) = 336 |
Triclinic, P1 | Dx = 1.378 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.318 (5) Å | Cell parameters from 3570 reflections |
b = 9.060 (5) Å | θ = 2.8–29.3° |
c = 12.011 (5) Å | µ = 0.25 mm−1 |
α = 87.196 (5)° | T = 295 K |
β = 80.477 (5)° | Block, colourless |
γ = 83.795 (5)° | 0.35 × 0.30 × 0.25 mm |
V = 780.4 (8) Å3 |
Bruker Kappa APEXII CCD diffractometer | 3570 independent reflections |
Radiation source: fine-focus sealed tube | 1887 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.027 |
ω and φ scans | θmax = 29.3°, θmin = 2.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | h = −9→9 |
Tmin = 0.916, Tmax = 0.939 | k = −12→11 |
6077 measured reflections | l = −15→16 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.042 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.097 | w = 1/[σ2(Fo2) + (0.0456P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.85 | (Δ/σ)max = 0.001 |
3570 reflections | Δρmax = 0.20 e Å−3 |
237 parameters | Δρmin = −0.24 e Å−3 |
11 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.014 (2) |
C17H14ClN5 | γ = 83.795 (5)° |
Mr = 323.77 | V = 780.4 (8) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.318 (5) Å | Mo Kα radiation |
b = 9.060 (5) Å | µ = 0.25 mm−1 |
c = 12.011 (5) Å | T = 295 K |
α = 87.196 (5)° | 0.35 × 0.30 × 0.25 mm |
β = 80.477 (5)° |
Bruker Kappa APEXII CCD diffractometer | 3570 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 1887 reflections with I > 2σ(I) |
Tmin = 0.916, Tmax = 0.939 | Rint = 0.027 |
6077 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 11 restraints |
wR(F2) = 0.097 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.85 | Δρmax = 0.20 e Å−3 |
3570 reflections | Δρmin = −0.24 e Å−3 |
237 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.7572 (3) | 0.0214 (2) | 1.33801 (16) | 0.0432 (5) | |
C2 | 0.9078 (3) | 0.1010 (2) | 1.30733 (17) | 0.0459 (5) | |
H2 | 1.0082 | 0.0866 | 1.3465 | 0.055* | |
C3 | 0.9092 (3) | 0.2024 (2) | 1.21800 (16) | 0.0390 (5) | |
H3 | 1.0107 | 0.2572 | 1.1977 | 0.047* | |
C4 | 0.7624 (2) | 0.22397 (19) | 1.15801 (14) | 0.0311 (4) | |
C5 | 0.6137 (3) | 0.1396 (2) | 1.18885 (16) | 0.0409 (5) | |
H5 | 0.5149 | 0.1510 | 1.1484 | 0.049* | |
C6 | 0.6108 (3) | 0.0393 (2) | 1.27858 (17) | 0.0486 (5) | |
H6 | 0.5101 | −0.0163 | 1.2990 | 0.058* | |
C7 | 0.7579 (2) | 0.34351 (18) | 1.06767 (15) | 0.0287 (4) | |
C8 | 0.7651 (2) | 0.48942 (18) | 1.09633 (15) | 0.0299 (4) | |
C9 | 0.7812 (3) | 0.5310 (2) | 1.20691 (18) | 0.0383 (5) | |
C10 | 0.7429 (2) | 0.31384 (18) | 0.95678 (14) | 0.0288 (4) | |
C11 | 0.7380 (3) | 0.1630 (2) | 0.93015 (15) | 0.0368 (5) | |
C12 | 0.7507 (2) | 0.60362 (18) | 1.01258 (15) | 0.0291 (4) | |
C13 | 0.7366 (2) | 0.43534 (19) | 0.87573 (15) | 0.0297 (4) | |
N5 | 0.7283 (2) | 0.42030 (16) | 0.76655 (12) | 0.0364 (4) | |
C18 | 0.7235 (3) | 0.5492 (2) | 0.68715 (16) | 0.0519 (6) | |
H18A | 0.8436 | 0.5884 | 0.6720 | 0.062* | |
H18B | 0.6299 | 0.6271 | 0.7177 | 0.062* | |
C17 | 0.6766 (10) | 0.4927 (6) | 0.5828 (4) | 0.0567 (15) | 0.638 (10) |
H17A | 0.7199 | 0.5533 | 0.5169 | 0.068* | 0.638 (10) |
H17B | 0.5437 | 0.4872 | 0.5884 | 0.068* | 0.638 (10) |
C16 | 0.7840 (11) | 0.3389 (7) | 0.5805 (4) | 0.0657 (18) | 0.638 (10) |
H16A | 0.9162 | 0.3446 | 0.5558 | 0.079* | 0.638 (10) |
H16B | 0.7389 | 0.2747 | 0.5310 | 0.079* | 0.638 (10) |
C17' | 0.7780 (18) | 0.4694 (13) | 0.5745 (7) | 0.068 (3) | 0.361 (10) |
H17C | 0.7346 | 0.5301 | 0.5135 | 0.082* | 0.362 (10) |
H17D | 0.9121 | 0.4476 | 0.5566 | 0.082* | 0.362 (10) |
C16' | 0.6834 (18) | 0.3273 (12) | 0.5927 (8) | 0.061 (3) | 0.362 (10) |
H16C | 0.7328 | 0.2556 | 0.5352 | 0.073* | 0.362 (10) |
H16D | 0.5492 | 0.3453 | 0.5982 | 0.073* | 0.362 (10) |
N1 | 0.73637 (19) | 0.57681 (15) | 0.90682 (12) | 0.0323 (4) | |
N2 | 0.7503 (2) | 0.74643 (18) | 1.03834 (16) | 0.0440 (4) | |
N3 | 0.7954 (3) | 0.5758 (2) | 1.29203 (16) | 0.0641 (6) | |
N4 | 0.7312 (3) | 0.04021 (19) | 0.91349 (15) | 0.0589 (5) | |
C15 | 0.7437 (4) | 0.2824 (2) | 0.70643 (18) | 0.0634 (7) | |
H15A | 0.6287 | 0.2354 | 0.7221 | 0.076* | |
H15B | 0.8451 | 0.2130 | 0.7257 | 0.076* | |
Cl1 | 0.74935 (9) | −0.10029 (6) | 1.45478 (5) | 0.0728 (2) | |
H2A | 0.759 (2) | 0.771 (2) | 1.1096 (10) | 0.048 (6)* | |
H2B | 0.745 (3) | 0.8223 (17) | 0.9853 (14) | 0.066 (7)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0684 (14) | 0.0303 (11) | 0.0283 (11) | −0.0027 (10) | −0.0039 (10) | 0.0067 (9) |
C2 | 0.0557 (13) | 0.0439 (12) | 0.0387 (12) | −0.0010 (10) | −0.0146 (10) | 0.0077 (10) |
C3 | 0.0415 (11) | 0.0378 (11) | 0.0385 (12) | −0.0088 (9) | −0.0076 (9) | 0.0051 (9) |
C4 | 0.0398 (11) | 0.0271 (9) | 0.0256 (10) | −0.0039 (8) | −0.0034 (8) | 0.0015 (8) |
C5 | 0.0487 (12) | 0.0400 (11) | 0.0370 (12) | −0.0138 (9) | −0.0116 (9) | 0.0056 (9) |
C6 | 0.0612 (13) | 0.0420 (12) | 0.0434 (13) | −0.0218 (10) | −0.0029 (11) | 0.0084 (10) |
C7 | 0.0281 (9) | 0.0274 (10) | 0.0307 (10) | −0.0048 (7) | −0.0050 (8) | 0.0030 (8) |
C8 | 0.0330 (10) | 0.0300 (10) | 0.0270 (10) | −0.0056 (8) | −0.0044 (8) | −0.0009 (8) |
C9 | 0.0478 (12) | 0.0321 (11) | 0.0352 (12) | −0.0076 (9) | −0.0064 (9) | 0.0022 (9) |
C10 | 0.0337 (10) | 0.0251 (9) | 0.0274 (10) | −0.0044 (8) | −0.0041 (8) | 0.0000 (8) |
C11 | 0.0504 (12) | 0.0305 (11) | 0.0285 (11) | −0.0044 (9) | −0.0044 (9) | 0.0035 (8) |
C12 | 0.0288 (10) | 0.0254 (10) | 0.0329 (11) | −0.0023 (8) | −0.0047 (8) | −0.0007 (8) |
C13 | 0.0306 (10) | 0.0300 (10) | 0.0287 (11) | −0.0034 (8) | −0.0054 (8) | −0.0006 (8) |
N5 | 0.0507 (10) | 0.0339 (9) | 0.0257 (9) | −0.0057 (7) | −0.0090 (7) | −0.0005 (7) |
C18 | 0.0719 (15) | 0.0521 (13) | 0.0318 (12) | −0.0033 (11) | −0.0136 (11) | 0.0086 (10) |
C17 | 0.059 (3) | 0.083 (3) | 0.031 (2) | −0.018 (3) | −0.015 (3) | 0.0128 (19) |
C16 | 0.108 (5) | 0.064 (3) | 0.029 (2) | −0.019 (4) | −0.011 (3) | −0.007 (2) |
C17' | 0.076 (8) | 0.093 (8) | 0.041 (5) | −0.027 (7) | −0.019 (5) | 0.014 (4) |
C16' | 0.073 (7) | 0.071 (6) | 0.038 (4) | −0.009 (5) | −0.006 (5) | −0.008 (4) |
N1 | 0.0412 (9) | 0.0268 (8) | 0.0297 (9) | −0.0040 (7) | −0.0089 (7) | 0.0027 (7) |
N2 | 0.0700 (12) | 0.0262 (9) | 0.0384 (11) | −0.0060 (8) | −0.0158 (9) | −0.0027 (8) |
N3 | 0.0930 (15) | 0.0639 (13) | 0.0390 (12) | −0.0137 (11) | −0.0146 (11) | −0.0101 (10) |
N4 | 0.0976 (15) | 0.0308 (10) | 0.0480 (12) | −0.0093 (10) | −0.0091 (10) | −0.0003 (9) |
C15 | 0.1068 (19) | 0.0471 (14) | 0.0404 (14) | −0.0073 (13) | −0.0214 (13) | −0.0100 (11) |
Cl1 | 0.1163 (6) | 0.0539 (4) | 0.0454 (4) | −0.0100 (3) | −0.0114 (3) | 0.0240 (3) |
C1—C2 | 1.372 (3) | C13—N1 | 1.352 (2) |
C1—C6 | 1.374 (3) | N5—C15 | 1.458 (3) |
C1—Cl1 | 1.7385 (19) | N5—C18 | 1.472 (2) |
C2—C3 | 1.377 (3) | C18—C17 | 1.481 (5) |
C2—H2 | 0.9300 | C18—C17' | 1.538 (8) |
C3—C4 | 1.382 (2) | C18—H18A | 0.9700 |
C3—H3 | 0.9300 | C18—H18B | 0.9700 |
C4—C5 | 1.388 (2) | C17—C16 | 1.523 (7) |
C4—C7 | 1.497 (2) | C17—H17A | 0.9700 |
C5—C6 | 1.374 (3) | C17—H17B | 0.9700 |
C5—H5 | 0.9300 | C16—C15 | 1.564 (5) |
C6—H6 | 0.9300 | C16—H16A | 0.9700 |
C7—C8 | 1.391 (2) | C16—H16B | 0.9700 |
C7—C10 | 1.396 (2) | C17'—C16' | 1.517 (9) |
C8—C12 | 1.415 (2) | C17'—H17C | 0.9700 |
C8—C9 | 1.425 (3) | C17'—H17D | 0.9700 |
C9—N3 | 1.143 (2) | C16'—C15 | 1.527 (8) |
C10—C11 | 1.424 (3) | C16'—H16C | 0.9700 |
C10—C13 | 1.435 (2) | C16'—H16D | 0.9700 |
C11—N4 | 1.147 (2) | N2—H2A | 0.907 (9) |
C12—N1 | 1.328 (2) | N2—H2B | 0.916 (9) |
C12—N2 | 1.345 (2) | C15—H15A | 0.9700 |
C13—N5 | 1.337 (2) | C15—H15B | 0.9700 |
C2—C1—C6 | 120.58 (18) | C17'—C18—H18A | 87.7 |
C2—C1—Cl1 | 119.71 (16) | N5—C18—H18B | 110.6 |
C6—C1—Cl1 | 119.71 (16) | C17—C18—H18B | 110.6 |
C1—C2—C3 | 119.43 (18) | C17'—C18—H18B | 136.3 |
C1—C2—H2 | 120.3 | H18A—C18—H18B | 108.8 |
C3—C2—H2 | 120.3 | C18—C17—C16 | 100.5 (4) |
C2—C3—C4 | 121.07 (18) | C18—C17—H17A | 111.7 |
C2—C3—H3 | 119.5 | C16—C17—H17A | 111.7 |
C4—C3—H3 | 119.5 | C18—C17—H17B | 111.7 |
C3—C4—C5 | 118.45 (17) | C16—C17—H17B | 111.7 |
C3—C4—C7 | 120.55 (16) | H17A—C17—H17B | 109.4 |
C5—C4—C7 | 120.84 (16) | C17—C16—C15 | 103.0 (4) |
C6—C5—C4 | 120.70 (18) | C17—C16—H16A | 111.2 |
C6—C5—H5 | 119.7 | C15—C16—H16A | 111.2 |
C4—C5—H5 | 119.7 | C17—C16—H16B | 111.2 |
C1—C6—C5 | 119.75 (19) | C15—C16—H16B | 111.2 |
C1—C6—H6 | 120.1 | H16A—C16—H16B | 109.1 |
C5—C6—H6 | 120.1 | C16'—C17'—C18 | 105.0 (7) |
C8—C7—C10 | 119.14 (16) | C16'—C17'—H17C | 110.7 |
C8—C7—C4 | 118.54 (16) | C18—C17'—H17C | 110.7 |
C10—C7—C4 | 122.30 (16) | C16'—C17'—H17D | 110.7 |
C7—C8—C12 | 118.67 (16) | C18—C17'—H17D | 110.7 |
C7—C8—C9 | 123.41 (16) | H17C—C17'—H17D | 108.8 |
C12—C8—C9 | 117.90 (16) | C17'—C16'—C15 | 96.3 (7) |
N3—C9—C8 | 174.5 (2) | C17'—C16'—H16C | 112.5 |
C7—C10—C11 | 117.62 (15) | C15—C16'—H16C | 112.5 |
C7—C10—C13 | 118.72 (15) | C17'—C16'—H16D | 112.5 |
C11—C10—C13 | 123.66 (16) | C15—C16'—H16D | 112.5 |
N4—C11—C10 | 177.1 (2) | H16C—C16'—H16D | 110.0 |
N1—C12—N2 | 117.00 (16) | C12—N1—C13 | 119.72 (15) |
N1—C12—C8 | 122.72 (16) | C12—N2—H2A | 120.3 (12) |
N2—C12—C8 | 120.28 (17) | C12—N2—H2B | 122.1 (13) |
N5—C13—N1 | 114.88 (15) | H2A—N2—H2B | 117.5 (18) |
N5—C13—C10 | 124.18 (16) | N5—C15—C16' | 105.3 (5) |
N1—C13—C10 | 120.93 (16) | N5—C15—C16 | 101.7 (3) |
C13—N5—C15 | 127.41 (16) | C16'—C15—C16 | 27.8 (3) |
C13—N5—C18 | 121.73 (15) | N5—C15—H15A | 111.4 |
C15—N5—C18 | 110.50 (16) | C16'—C15—H15A | 84.8 |
N5—C18—C17 | 105.5 (3) | C16—C15—H15A | 111.4 |
N5—C18—C17' | 99.8 (5) | N5—C15—H15B | 111.4 |
C17—C18—C17' | 28.3 (4) | C16'—C15—H15B | 131.2 |
N5—C18—H18A | 110.6 | C16—C15—H15B | 111.4 |
C17—C18—H18A | 110.6 | H15A—C15—H15B | 109.3 |
C6—C1—C2—C3 | 1.8 (3) | C7—C10—C13—N1 | −3.1 (2) |
Cl1—C1—C2—C3 | −176.95 (15) | C11—C10—C13—N1 | 178.08 (16) |
C1—C2—C3—C4 | −0.8 (3) | N1—C13—N5—C15 | 173.81 (18) |
C2—C3—C4—C5 | −0.8 (3) | C10—C13—N5—C15 | −7.1 (3) |
C2—C3—C4—C7 | 174.70 (17) | N1—C13—N5—C18 | 1.3 (2) |
C3—C4—C5—C6 | 1.4 (3) | C10—C13—N5—C18 | −179.57 (17) |
C7—C4—C5—C6 | −174.06 (17) | C13—N5—C18—C17 | −168.9 (3) |
C2—C1—C6—C5 | −1.2 (3) | C15—N5—C18—C17 | 17.4 (4) |
Cl1—C1—C6—C5 | 177.55 (15) | C13—N5—C18—C17' | 162.6 (5) |
C4—C5—C6—C1 | −0.5 (3) | C15—N5—C18—C17' | −11.1 (5) |
C3—C4—C7—C8 | −57.7 (2) | N5—C18—C17—C16 | −37.2 (6) |
C5—C4—C7—C8 | 117.6 (2) | C17'—C18—C17—C16 | 44.7 (9) |
C3—C4—C7—C10 | 123.59 (19) | C18—C17—C16—C15 | 43.0 (8) |
C5—C4—C7—C10 | −61.0 (2) | N5—C18—C17'—C16' | 37.4 (11) |
C10—C7—C8—C12 | 2.1 (2) | C17—C18—C17'—C16' | −67.1 (10) |
C4—C7—C8—C12 | −176.63 (16) | C18—C17'—C16'—C15 | −47.4 (13) |
C10—C7—C8—C9 | −179.69 (16) | N2—C12—N1—C13 | 179.75 (15) |
C4—C7—C8—C9 | 1.6 (3) | C8—C12—N1—C13 | −0.5 (2) |
C8—C7—C10—C11 | 179.32 (16) | N5—C13—N1—C12 | −177.73 (15) |
C4—C7—C10—C11 | −2.0 (2) | C10—C13—N1—C12 | 3.1 (2) |
C8—C7—C10—C13 | 0.4 (2) | C13—N5—C15—C16' | 168.2 (5) |
C4—C7—C10—C13 | 179.06 (16) | C18—N5—C15—C16' | −18.6 (5) |
C7—C8—C12—N1 | −2.2 (2) | C13—N5—C15—C16 | −163.4 (3) |
C9—C8—C12—N1 | 179.51 (16) | C18—N5—C15—C16 | 9.8 (4) |
C7—C8—C12—N2 | 177.60 (17) | C17'—C16'—C15—N5 | 39.5 (11) |
C9—C8—C12—N2 | −0.7 (2) | C17'—C16'—C15—C16 | −46.5 (9) |
C7—C10—C13—N5 | 177.84 (15) | C17—C16—C15—N5 | −32.6 (7) |
C11—C10—C13—N5 | −1.0 (3) | C17—C16—C15—C16' | 68.1 (11) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2B···N4i | 0.92 (1) | 2.12 (1) | 2.992 (3) | 160 (2) |
Symmetry code: (i) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | C17H14ClN5 |
Mr | 323.77 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 295 |
a, b, c (Å) | 7.318 (5), 9.060 (5), 12.011 (5) |
α, β, γ (°) | 87.196 (5), 80.477 (5), 83.795 (5) |
V (Å3) | 780.4 (8) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.25 |
Crystal size (mm) | 0.35 × 0.30 × 0.25 |
Data collection | |
Diffractometer | Bruker Kappa APEXII CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2008) |
Tmin, Tmax | 0.916, 0.939 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6077, 3570, 1887 |
Rint | 0.027 |
(sin θ/λ)max (Å−1) | 0.689 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.097, 0.85 |
No. of reflections | 3570 |
No. of parameters | 237 |
No. of restraints | 11 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.20, −0.24 |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SHELXS97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2B···N4i | 0.916 (9) | 2.115 (12) | 2.992 (3) | 160.0 (18) |
Symmetry code: (i) x, y+1, z. |
Acknowledgements
The authors thank the SAIF, IIT, Chennai, India, for the data collection. SAIB and KS also thank Dr V. Murugan, Head of of the Physics Department, RKM Vivekananda College, Chennai, India, for providing computational facilities to carry out this research work.
References
Atoji, M. & Lipscomb, W. N. (1953). Acta Cryst. 6, 770–774. CSD CrossRef CAS IUCr Journals Web of Science Google Scholar
Bruker (2008). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Chao, M., Schemp, E. & Rosenstein, R. D. (1975). Acta Cryst. B31, 2924–2926. CSD CrossRef CAS IUCr Journals Web of Science Google Scholar
Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354—1358. Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Pyridine and its derivatives play an important role in hetrocyclic chemistry. Pyridine containing compounds are the new class of anti–HIV molecules, which particularly inhibit RNA dependent DNA polymerase or reverse transcriptace and thus act as non–nucleoside reverse transcriptace inhibitors. They also exhibit cytotoxic, anti–cancer, anti–tumour and anti–bacterial activity.
The pyrrolidine ring adopts a twisted conformation in both the major and minor conformers (occupancy factors of 0.638 (10)/0.362 (10) respectively). Puckering parameters (Cremer & Pople, 1975) are q2 and φ2, of 0.422 (6)Å and 273.9 (4)° for the major conformer (N5/C15/C16/C17/C18) and 0.469 (10)Å and 86.4 (6)°, respectively, for the minor conformer (N5/C15/C16'/C17'/C18).
The bond lengths of the nitrile groups attached to pyridine ring are typical (N4≡C11 = 1.148 (2)Å and C9≡N3 = 1.142 (2)Å). The nitrile groups form angles with parent C atoms: 177.1 (2)° and 174.5 (2)°. The sum angles around the atom C12 are slightly less 360° (real 358.0 (2)°) - deformed by the amino group, as seen in other aminopyridines (Chao et al., 1975; Kvick et al., 1976). This behaviour characterizes the resonance of the N2 lone pair with the aromatic ring. The effect can also be verified by the shortening of the C12—N2 bond (1.345 (2)Å) relative to a normal single C—N bond (1.483Å for C—N in methaneamine (Atoji & Lipscomb, 1953).
The amino group is planar with the pyridine ring as indicated by the torsion angle N2—C12—N1—C13 = 179.75 (16)°. The chlorine atom attached at C1 deviates by -0.0817 (3)Å from the mean plane of the phenyl ring. The title structure exhibits structural similarities with the previously reported structure (Inglebert et al., 2011).
In the crystal structure, the classical intermolecular N2—H2B···N4i hydrogen bonds link the molecules into chains along the b axis. Symmetry code: (i) x, y+1, z.