metal-organic compounds
(Acetato-κO)(aqua-κO)(2-{bis[(3,5-dimethyl-1H-pyrazol-1-yl-κN2)methyl]amino-κN}ethanol-κO)nickel(II) perchlorate monohydrate
aState Key Laboratory of Metal Matrix Composites, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, Shanghai 200240, People's Republic of China
*Correspondence e-mail: mhshu@sjtu.edu.cn
In the structure of the title complex, [Ni(CH3CO2)(C14H23N5O)(H2O)]ClO4·H2O, the NiII centre has a distorted octahedral environment defined by one O and three N atoms derived from the tetradentate ligand, and two O atoms, one from a water molecule and the other from an acetate anion. The molecules are connected into a three-dimensional architecture by O—H⋯O hydrogen bonds. The perchlorate anion is disordered over two positions; the major component has a site-occupancy factor of 0.525 (19).
Related literature
For the preparation of the tripodal ligand, see: Malachowski et al. (1992). For background to hydrolytic enzymes, see: Koike et al. (1995); Lipscomb & Sträter (1996). For related structures, see: Shin et al. (2011); Sundaravel et al. (2011); Xia et al. (2001).
Experimental
Crystal data
|
Refinement
|
Data collection: SMART (Bruker, 2000); cell SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536812007970/tk5060sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812007970/tk5060Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812007970/tk5060Isup3.mol
A solution of Ni(OAc)2.4H2O(0.2 mmol) in 2 ml H2O was added dropwise to a solution of N,N-bis(3,5-dimethyl-pyrazol-1-yl-methylene-)aminoethanol (0.2 mmol) in 10 ml of methanol. The blue solution was stirred for 30 min and a drop of saturated NaClO4 solution was added to the mixture. The clear solution in a test tube was left undisturbed. Blue crystals were obtained after a week.
H atoms bonded to O atoms were located in a difference map and refined with distance restraints of O—H = 0.86±0.01 Å. Other H atoms were positioned geometrically and refined using a riding model with C—H = 0.93 (aromatic), C—H = 0.97 (CH2) and C—H = 0.96 (CH3) Å. All H atoms were refined with Uiso(H) = 1.2 (1.5 for methyl groups) Ueq(C). The perchlorate is disordered and refined over two positions. The site occupancy factors of the two positions were refined to a ratio 0.525 (19) and 0.475 (19), and with distances restraints of Cl—O = 1.44 (1) Å.
ZnII-bound
resulting from the deprotonation of the ZnII-coordinated alcoholic hydroxides in ZnII-containing enzymes (Lipscomb & Sträter, 1996), usually act as nucleophiles to attack the substrates (e.g. phosphates, CO2, and carboxy esters). Polyamines with a pendant ethoxyl group can mimic the chemical surroundings of ZnII in the active site of the ZnII-containing enzymes (Koike et al., 1995). This encouraged us to investigate the coordination chemistry of transition metal ions with a new ligand containing a N3O donor set. In this work, N,N-bis(3,5-dimethyl-pyrazol-1-yl-methylene)aminoethanol (Malachowski et al., 1992) was reacted with nickel acetate in the presence of sodium perchlorate to yield the title complex as blue crystals in 68% yield. Related structures have been reported previously (Shin et al., 2011; Sundaravel et al., 2011; Xia et al., 2001).In the structure, the NiII cation has a six-coordinated geometry consisting of three N atoms and an O atom from the organic ligand, and two O atoms from a water molecule and an acetate (Fig. 1). The Ni—Npyrazolyl bond distances are 2.071 (4) and 2.044 (4) Å, which are shorter than the Ni—Namino bond length (2.124 (3) Å). The Ni—Oacetate bond distance is 1.999 (3) Å, which is about 0.1 Å shorter than those of Ni—Oalcohol (2.097 (3) Å) and Ni—Owater (2.126 (4) Å). The cis bond angles are deviate from 90° by about 10°, and the trans bond angles deviate from 180° by about 20°. Therefore, the coordination geometry of the NiII centre is a distorted octahedron. In the crystal, there are O—H···O hydrogen bonds. The unit contents are illustrated in Fig. 2.
For the preparation of the tripodal ligand, see: Malachowski et al. (1992). For background to hydrolytic enzymes, see: Koike et al. (1995); Lipscomb & Sträter (1996). For related structures, see: Shin et al. (2011); Sundaravel et al. (2011); Xia et al. (2001).
Data collection: SMART (Bruker, 2000); cell
SAINT (Bruker, 2000); data reduction: SAINT (Bruker, 2000); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and publCIF (Westrip, 2010).Fig. 1. The molecular structure of the title complex with atom labels and 30% probability displacement ellipsoids for non-H atoms. H atoms bound to the C atoms were omitted for clarity. | |
Fig. 2. The packing of the complex, viewed approximately down the a axis, showing the O—H···O hydrogen bonds (dashed lines). |
[Ni(C2H3O2)(C14H23N5O)(H2O)]ClO4·H2O | F(000) = 1112 |
Mr = 530.61 | Dx = 1.514 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 1110 reflections |
a = 9.6055 (11) Å | θ = 5.3° |
b = 9.9889 (11) Å | µ = 1.00 mm−1 |
c = 24.258 (3) Å | T = 293 K |
β = 90.284 (2)° | Block, blue |
V = 2327.5 (5) Å3 | 0.43 × 0.37 × 0.21 mm |
Z = 4 |
Bruker APEX CCD diffractometer | 5057 independent reflections |
Radiation source: fine-focus sealed tube | 2284 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.082 |
φ and ω scans | θmax = 27.0°, θmin = 1.7° |
Absorption correction: empirical (using intensity measurements) (SADABS; Sheldrick, 2003) | h = −12→12 |
Tmin = 0.732, Tmax = 1.000 | k = −9→12 |
13249 measured reflections | l = −30→24 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.059 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.142 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.82 | w = 1/[σ2(Fo2) + (0.0493P)2] where P = (Fo2 + 2Fc2)/3 |
5057 reflections | (Δ/σ)max = 0.001 |
310 parameters | Δρmax = 0.66 e Å−3 |
26 restraints | Δρmin = −0.50 e Å−3 |
[Ni(C2H3O2)(C14H23N5O)(H2O)]ClO4·H2O | V = 2327.5 (5) Å3 |
Mr = 530.61 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 9.6055 (11) Å | µ = 1.00 mm−1 |
b = 9.9889 (11) Å | T = 293 K |
c = 24.258 (3) Å | 0.43 × 0.37 × 0.21 mm |
β = 90.284 (2)° |
Bruker APEX CCD diffractometer | 5057 independent reflections |
Absorption correction: empirical (using intensity measurements) (SADABS; Sheldrick, 2003) | 2284 reflections with I > 2σ(I) |
Tmin = 0.732, Tmax = 1.000 | Rint = 0.082 |
13249 measured reflections |
R[F2 > 2σ(F2)] = 0.059 | 26 restraints |
wR(F2) = 0.142 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.82 | Δρmax = 0.66 e Å−3 |
5057 reflections | Δρmin = −0.50 e Å−3 |
310 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Ni | −0.44003 (7) | 1.26474 (6) | 0.84018 (3) | 0.0315 (2) | |
Cl | −0.00311 (17) | 0.76885 (16) | 0.95183 (7) | 0.0575 (4) | 0.525 (19) |
Cl' | −0.00311 (17) | 0.76885 (16) | 0.95183 (7) | 0.0575 (4) | 0.475 (19) |
N1 | −0.2854 (4) | 1.2368 (4) | 0.90201 (15) | 0.0328 (10) | |
N2 | −0.2798 (4) | 1.1888 (4) | 0.79269 (17) | 0.0342 (10) | |
N3 | −0.1741 (4) | 1.1411 (4) | 0.82475 (17) | 0.0355 (10) | |
N4 | −0.5531 (5) | 1.3175 (4) | 0.90797 (17) | 0.0374 (11) | |
N5 | −0.4845 (5) | 1.2870 (4) | 0.95579 (18) | 0.0436 (12) | |
O1 | −0.3473 (4) | 1.4547 (3) | 0.83710 (15) | 0.0383 (9) | |
H26 | −0.357 (6) | 1.491 (5) | 0.8051 (10) | 0.07 (2)* | |
O2 | −0.5772 (3) | 1.3140 (3) | 0.78136 (14) | 0.0383 (9) | |
O3 | −0.6299 (4) | 1.1117 (3) | 0.74957 (14) | 0.0437 (9) | |
O4 | −0.5166 (4) | 1.0662 (4) | 0.84915 (19) | 0.0434 (9) | |
H27 | −0.572 (4) | 1.067 (5) | 0.8766 (14) | 0.050 (19)* | |
H28 | −0.565 (5) | 1.062 (6) | 0.8195 (14) | 0.08 (2)* | |
O5 | 0.2962 (5) | 1.0394 (6) | 0.9409 (2) | 0.0831 (15) | |
H29 | 0.240 (5) | 0.972 (4) | 0.938 (2) | 0.09 (3)* | |
H30 | 0.276 (6) | 1.100 (4) | 0.965 (2) | 0.08 (3)* | |
O11 | 0.1400 (8) | 0.7866 (11) | 0.9351 (5) | 0.088 (3) | 0.525 (19) |
O11' | 0.1098 (13) | 0.8400 (14) | 0.9279 (5) | 0.106 (3) | 0.475 (19) |
O12 | −0.0120 (12) | 0.7935 (11) | 1.0102 (3) | 0.088 (3) | 0.525 (19) |
O12' | −0.0278 (16) | 0.8426 (13) | 1.0018 (4) | 0.106 (3) | 0.475 (19) |
O13 | −0.1096 (9) | 0.8469 (13) | 0.9288 (5) | 0.088 (3) | 0.525 (19) |
O13' | −0.1122 (10) | 0.7788 (18) | 0.9127 (5) | 0.106 (3) | 0.475 (19) |
O14 | −0.0262 (12) | 0.6290 (7) | 0.9444 (5) | 0.088 (3) | 0.525 (19) |
O14' | 0.0112 (16) | 0.6299 (8) | 0.9658 (6) | 0.106 (3) | 0.475 (19) |
C1 | −0.1981 (6) | 1.1237 (5) | 0.8832 (2) | 0.0438 (14) | |
H1A | −0.1102 | 1.1230 | 0.9030 | 0.053* | |
H1B | −0.2452 | 1.0394 | 0.8899 | 0.053* | |
C2 | −0.0605 (6) | 1.1114 (5) | 0.7946 (2) | 0.0459 (15) | |
C3 | −0.0943 (6) | 1.1418 (5) | 0.7411 (2) | 0.0482 (16) | |
H3A | −0.0374 | 1.1314 | 0.7105 | 0.058* | |
C4 | −0.2312 (6) | 1.1917 (5) | 0.7410 (2) | 0.0409 (14) | |
C5 | −0.3171 (6) | 1.2402 (5) | 0.6948 (2) | 0.0535 (16) | |
H5A | −0.4067 | 1.2672 | 0.7083 | 0.080* | |
H5B | −0.3287 | 1.1698 | 0.6683 | 0.080* | |
H5C | −0.2721 | 1.3152 | 0.6778 | 0.080* | |
C6 | 0.0674 (6) | 1.0516 (6) | 0.8194 (3) | 0.072 (2) | |
H6A | 0.0559 | 1.0437 | 0.8585 | 0.107* | |
H6B | 0.1458 | 1.1081 | 0.8118 | 0.107* | |
H6C | 0.0829 | 0.9646 | 0.8038 | 0.107* | |
C7 | −0.3614 (6) | 1.2020 (5) | 0.9529 (2) | 0.0475 (15) | |
H7A | −0.3885 | 1.1084 | 0.9522 | 0.057* | |
H7B | −0.3024 | 1.2166 | 0.9850 | 0.057* | |
C8 | −0.5593 (7) | 1.3211 (6) | 1.0010 (2) | 0.0497 (16) | |
C9 | −0.6788 (7) | 1.3771 (5) | 0.9807 (2) | 0.0536 (17) | |
H9A | −0.7517 | 1.4113 | 1.0014 | 0.064* | |
C10 | −0.6722 (6) | 1.3739 (5) | 0.9235 (2) | 0.0442 (15) | |
C11 | −0.7764 (6) | 1.4210 (5) | 0.8818 (3) | 0.0629 (18) | |
H11B | −0.7416 | 1.4047 | 0.8454 | 0.094* | |
H11C | −0.7923 | 1.5152 | 0.8866 | 0.094* | |
H11D | −0.8623 | 1.3734 | 0.8867 | 0.094* | |
C12 | −0.5118 (7) | 1.2947 (6) | 1.0577 (2) | 0.078 (2) | |
H12A | −0.4213 | 1.2540 | 1.0569 | 0.117* | |
H12B | −0.5761 | 1.2354 | 1.0755 | 0.117* | |
H12C | −0.5070 | 1.3774 | 1.0778 | 0.117* | |
C13 | −0.2072 (6) | 1.3644 (5) | 0.9084 (2) | 0.0425 (14) | |
H13A | −0.1120 | 1.3446 | 0.9191 | 0.051* | |
H13B | −0.2490 | 1.4167 | 0.9377 | 0.051* | |
C14 | −0.2067 (6) | 1.4462 (5) | 0.8560 (2) | 0.0424 (14) | |
H14A | −0.1700 | 1.5350 | 0.8632 | 0.051* | |
H14B | −0.1491 | 1.4035 | 0.8284 | 0.051* | |
C15 | −0.6364 (5) | 1.2371 (5) | 0.7480 (2) | 0.0351 (12) | |
C16 | −0.7201 (6) | 1.3043 (5) | 0.7039 (2) | 0.0552 (16) | |
H16A | −0.7145 | 1.3996 | 0.7084 | 0.083* | |
H16B | −0.8155 | 1.2763 | 0.7064 | 0.083* | |
H16C | −0.6840 | 1.2800 | 0.6684 | 0.083* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ni | 0.0311 (4) | 0.0329 (4) | 0.0304 (4) | 0.0005 (3) | −0.0002 (3) | −0.0012 (3) |
Cl | 0.0533 (10) | 0.0626 (11) | 0.0566 (10) | −0.0156 (8) | −0.0060 (8) | 0.0043 (9) |
Cl' | 0.0533 (10) | 0.0626 (11) | 0.0566 (10) | −0.0156 (8) | −0.0060 (8) | 0.0043 (9) |
N1 | 0.037 (3) | 0.032 (2) | 0.029 (2) | −0.003 (2) | −0.0011 (19) | 0.0008 (19) |
N2 | 0.031 (3) | 0.039 (2) | 0.032 (3) | 0.0024 (19) | 0.000 (2) | −0.0026 (19) |
N3 | 0.029 (3) | 0.041 (3) | 0.036 (3) | 0.005 (2) | −0.002 (2) | 0.001 (2) |
N4 | 0.039 (3) | 0.039 (2) | 0.034 (3) | −0.001 (2) | 0.003 (2) | 0.000 (2) |
N5 | 0.051 (3) | 0.044 (3) | 0.036 (3) | −0.008 (2) | 0.012 (2) | −0.003 (2) |
O1 | 0.037 (2) | 0.036 (2) | 0.042 (2) | −0.0039 (16) | −0.0077 (19) | 0.0048 (18) |
O2 | 0.039 (2) | 0.036 (2) | 0.040 (2) | 0.0020 (16) | −0.0108 (18) | −0.0072 (17) |
O3 | 0.052 (3) | 0.034 (2) | 0.045 (2) | −0.0001 (17) | −0.0064 (19) | −0.0017 (17) |
O4 | 0.042 (3) | 0.044 (2) | 0.045 (3) | −0.0032 (18) | −0.003 (2) | 0.001 (2) |
O5 | 0.084 (4) | 0.073 (4) | 0.092 (4) | −0.034 (3) | 0.006 (3) | 0.006 (3) |
O11 | 0.086 (5) | 0.067 (4) | 0.109 (5) | 0.005 (3) | −0.015 (3) | 0.000 (3) |
O11' | 0.118 (7) | 0.093 (6) | 0.106 (6) | −0.028 (4) | −0.013 (4) | 0.003 (4) |
O12 | 0.086 (5) | 0.067 (4) | 0.109 (5) | 0.005 (3) | −0.015 (3) | 0.000 (3) |
O12' | 0.118 (7) | 0.093 (6) | 0.106 (6) | −0.028 (4) | −0.013 (4) | 0.003 (4) |
O13 | 0.086 (5) | 0.067 (4) | 0.109 (5) | 0.005 (3) | −0.015 (3) | 0.000 (3) |
O13' | 0.118 (7) | 0.093 (6) | 0.106 (6) | −0.028 (4) | −0.013 (4) | 0.003 (4) |
O14 | 0.086 (5) | 0.067 (4) | 0.109 (5) | 0.005 (3) | −0.015 (3) | 0.000 (3) |
O14' | 0.118 (7) | 0.093 (6) | 0.106 (6) | −0.028 (4) | −0.013 (4) | 0.003 (4) |
C1 | 0.047 (4) | 0.042 (3) | 0.043 (4) | 0.008 (3) | −0.008 (3) | 0.001 (3) |
C2 | 0.036 (4) | 0.046 (3) | 0.056 (4) | 0.000 (3) | 0.009 (3) | −0.004 (3) |
C3 | 0.036 (4) | 0.052 (4) | 0.056 (4) | 0.001 (3) | 0.019 (3) | −0.006 (3) |
C4 | 0.046 (4) | 0.037 (3) | 0.040 (4) | −0.004 (3) | 0.008 (3) | −0.005 (3) |
C5 | 0.054 (4) | 0.078 (4) | 0.029 (3) | 0.002 (3) | 0.007 (3) | 0.003 (3) |
C6 | 0.039 (4) | 0.081 (5) | 0.095 (6) | 0.014 (3) | 0.005 (4) | 0.011 (4) |
C7 | 0.059 (4) | 0.052 (4) | 0.031 (3) | −0.001 (3) | −0.004 (3) | 0.006 (3) |
C8 | 0.059 (5) | 0.053 (4) | 0.037 (4) | −0.017 (3) | 0.018 (3) | −0.009 (3) |
C9 | 0.051 (4) | 0.054 (4) | 0.055 (4) | −0.012 (3) | 0.027 (4) | −0.020 (3) |
C10 | 0.044 (4) | 0.030 (3) | 0.058 (4) | −0.011 (3) | 0.018 (3) | −0.011 (3) |
C11 | 0.039 (4) | 0.057 (4) | 0.092 (5) | 0.008 (3) | 0.009 (4) | −0.014 (4) |
C12 | 0.103 (6) | 0.096 (5) | 0.036 (4) | −0.014 (4) | 0.020 (4) | −0.008 (3) |
C13 | 0.046 (4) | 0.042 (3) | 0.040 (3) | −0.007 (3) | −0.004 (3) | −0.006 (3) |
C14 | 0.044 (4) | 0.041 (3) | 0.042 (4) | −0.007 (3) | −0.010 (3) | 0.003 (3) |
C15 | 0.028 (3) | 0.045 (3) | 0.033 (3) | 0.001 (3) | 0.002 (2) | 0.002 (3) |
C16 | 0.051 (4) | 0.055 (4) | 0.059 (4) | 0.000 (3) | −0.021 (3) | 0.002 (3) |
Ni—O2 | 1.999 (3) | C2—C6 | 1.490 (7) |
Ni—N4 | 2.044 (4) | C3—C4 | 1.406 (7) |
Ni—N2 | 2.071 (4) | C3—H3A | 0.9300 |
Ni—O1 | 2.097 (3) | C4—C5 | 1.471 (7) |
Ni—N1 | 2.124 (4) | C5—H5A | 0.9600 |
Ni—O4 | 2.126 (4) | C5—H5B | 0.9600 |
Cl—O13 | 1.401 (7) | C5—H5C | 0.9600 |
Cl—O14 | 1.426 (7) | C6—H6A | 0.9600 |
Cl—O12 | 1.439 (7) | C6—H6B | 0.9600 |
Cl—O11 | 1.446 (7) | C6—H6C | 0.9600 |
N1—C7 | 1.480 (6) | C7—H7A | 0.9700 |
N1—C1 | 1.481 (6) | C7—H7B | 0.9700 |
N1—C13 | 1.487 (6) | C8—C9 | 1.368 (8) |
N2—C4 | 1.339 (6) | C8—C12 | 1.471 (8) |
N2—N3 | 1.362 (5) | C9—C10 | 1.389 (7) |
N3—C2 | 1.349 (6) | C9—H9A | 0.9300 |
N3—C1 | 1.447 (6) | C10—C11 | 1.495 (7) |
N4—C10 | 1.332 (6) | C11—H11B | 0.9600 |
N4—N5 | 1.366 (5) | C11—H11C | 0.9600 |
N5—C8 | 1.358 (6) | C11—H11D | 0.9600 |
N5—C7 | 1.458 (6) | C12—H12A | 0.9600 |
O1—C14 | 1.427 (6) | C12—H12B | 0.9600 |
O1—H26 | 0.863 (10) | C12—H12C | 0.9600 |
O2—C15 | 1.251 (6) | C13—C14 | 1.512 (6) |
O3—C15 | 1.255 (5) | C13—H13A | 0.9700 |
O4—H27 | 0.858 (10) | C13—H13B | 0.9700 |
O4—H28 | 0.856 (10) | C14—H14A | 0.9700 |
O5—H29 | 0.861 (10) | C14—H14B | 0.9700 |
O5—H30 | 0.862 (10) | C15—C16 | 1.494 (7) |
C1—H1A | 0.9700 | C16—H16A | 0.9600 |
C1—H1B | 0.9700 | C16—H16B | 0.9600 |
C2—C3 | 1.371 (7) | C16—H16C | 0.9600 |
O2—Ni—N4 | 99.19 (16) | C3—C4—C5 | 129.7 (5) |
O2—Ni—N2 | 100.50 (15) | C4—C5—H5A | 109.5 |
N4—Ni—N2 | 160.25 (17) | C4—C5—H5B | 109.5 |
O2—Ni—O1 | 91.73 (14) | H5A—C5—H5B | 109.5 |
N4—Ni—O1 | 91.29 (15) | C4—C5—H5C | 109.5 |
N2—Ni—O1 | 89.70 (15) | H5A—C5—H5C | 109.5 |
O2—Ni—N1 | 172.99 (14) | H5B—C5—H5C | 109.5 |
N4—Ni—N1 | 80.69 (16) | C2—C6—H6A | 109.5 |
N2—Ni—N1 | 79.96 (16) | C2—C6—H6B | 109.5 |
O1—Ni—N1 | 81.27 (14) | H6A—C6—H6B | 109.5 |
O2—Ni—O4 | 94.35 (15) | C2—C6—H6C | 109.5 |
N4—Ni—O4 | 88.45 (16) | H6A—C6—H6C | 109.5 |
N2—Ni—O4 | 88.49 (16) | H6B—C6—H6C | 109.5 |
O1—Ni—O4 | 173.88 (16) | N5—C7—N1 | 107.8 (4) |
N1—Ni—O4 | 92.65 (16) | N5—C7—H7A | 110.1 |
O13—Cl—O14 | 112.4 (5) | N1—C7—H7A | 110.1 |
O13—Cl—O12 | 104.5 (6) | N5—C7—H7B | 110.1 |
O14—Cl—O12 | 106.4 (5) | N1—C7—H7B | 110.1 |
O13—Cl—O11 | 120.9 (6) | H7A—C7—H7B | 108.5 |
O14—Cl—O11 | 103.4 (6) | N5—C8—C9 | 104.9 (5) |
O12—Cl—O11 | 108.4 (7) | N5—C8—C12 | 123.3 (6) |
C7—N1—C1 | 111.1 (4) | C9—C8—C12 | 131.9 (6) |
C7—N1—C13 | 111.4 (4) | C8—C9—C10 | 108.0 (5) |
C1—N1—C13 | 113.6 (4) | C8—C9—H9A | 126.0 |
C7—N1—Ni | 105.9 (3) | C10—C9—H9A | 126.0 |
C1—N1—Ni | 106.1 (3) | N4—C10—C9 | 109.6 (6) |
C13—N1—Ni | 108.2 (3) | N4—C10—C11 | 121.0 (5) |
C4—N2—N3 | 106.2 (4) | C9—C10—C11 | 129.4 (5) |
C4—N2—Ni | 140.9 (4) | C10—C11—H11B | 109.5 |
N3—N2—Ni | 111.4 (3) | C10—C11—H11C | 109.5 |
C2—N3—N2 | 111.7 (4) | H11B—C11—H11C | 109.5 |
C2—N3—C1 | 129.6 (5) | C10—C11—H11D | 109.5 |
N2—N3—C1 | 118.6 (4) | H11B—C11—H11D | 109.5 |
C10—N4—N5 | 105.4 (4) | H11C—C11—H11D | 109.5 |
C10—N4—Ni | 142.9 (4) | C8—C12—H12A | 109.5 |
N5—N4—Ni | 111.7 (3) | C8—C12—H12B | 109.5 |
C8—N5—N4 | 112.1 (5) | H12A—C12—H12B | 109.5 |
C8—N5—C7 | 128.1 (5) | C8—C12—H12C | 109.5 |
N4—N5—C7 | 118.5 (4) | H12A—C12—H12C | 109.5 |
C14—O1—Ni | 109.7 (3) | H12B—C12—H12C | 109.5 |
C14—O1—H26 | 114 (4) | N1—C13—C14 | 112.3 (4) |
Ni—O1—H26 | 112 (4) | N1—C13—H13A | 109.2 |
C15—O2—Ni | 127.3 (3) | C14—C13—H13A | 109.2 |
Ni—O4—H27 | 107 (3) | N1—C13—H13B | 109.2 |
Ni—O4—H28 | 99 (4) | C14—C13—H13B | 109.2 |
H27—O4—H28 | 108 (5) | H13A—C13—H13B | 107.9 |
H29—O5—H30 | 117 (3) | O1—C14—C13 | 107.2 (4) |
N3—C1—N1 | 107.7 (4) | O1—C14—H14A | 110.3 |
N3—C1—H1A | 110.2 | C13—C14—H14A | 110.3 |
N1—C1—H1A | 110.2 | O1—C14—H14B | 110.3 |
N3—C1—H1B | 110.2 | C13—C14—H14B | 110.3 |
N1—C1—H1B | 110.2 | H14A—C14—H14B | 108.5 |
H1A—C1—H1B | 108.5 | O2—C15—O3 | 124.8 (5) |
N3—C2—C3 | 106.0 (5) | O2—C15—C16 | 115.4 (5) |
N3—C2—C6 | 122.5 (5) | O3—C15—C16 | 119.8 (5) |
C3—C2—C6 | 131.5 (5) | C15—C16—H16A | 109.5 |
C2—C3—C4 | 107.3 (5) | C15—C16—H16B | 109.5 |
C2—C3—H3A | 126.4 | H16A—C16—H16B | 109.5 |
C4—C3—H3A | 126.4 | C15—C16—H16C | 109.5 |
N2—C4—C3 | 108.8 (5) | H16A—C16—H16C | 109.5 |
N2—C4—C5 | 121.5 (5) | H16B—C16—H16C | 109.5 |
O2—Ni—N1—C7 | 118.3 (11) | O4—Ni—O1—C14 | 18.1 (16) |
N4—Ni—N1—C7 | 28.7 (3) | N4—Ni—O2—C15 | −115.7 (4) |
N2—Ni—N1—C7 | −147.3 (3) | N2—Ni—O2—C15 | 62.7 (4) |
O1—Ni—N1—C7 | 121.4 (3) | O1—Ni—O2—C15 | 152.7 (4) |
O4—Ni—N1—C7 | −59.3 (3) | N1—Ni—O2—C15 | 155.8 (11) |
O2—Ni—N1—C1 | −123.5 (11) | O4—Ni—O2—C15 | −26.6 (4) |
N4—Ni—N1—C1 | 146.9 (3) | C2—N3—C1—N1 | 145.0 (5) |
N2—Ni—N1—C1 | −29.1 (3) | N2—N3—C1—N1 | −38.1 (6) |
O1—Ni—N1—C1 | −120.4 (3) | C7—N1—C1—N3 | 157.0 (4) |
O4—Ni—N1—C1 | 58.9 (3) | C13—N1—C1—N3 | −76.5 (5) |
O2—Ni—N1—C13 | −1.3 (13) | Ni—N1—C1—N3 | 42.3 (4) |
N4—Ni—N1—C13 | −90.9 (3) | N2—N3—C2—C3 | 0.3 (6) |
N2—Ni—N1—C13 | 93.1 (3) | C1—N3—C2—C3 | 177.3 (5) |
O1—Ni—N1—C13 | 1.9 (3) | N2—N3—C2—C6 | −177.1 (5) |
O4—Ni—N1—C13 | −178.9 (3) | C1—N3—C2—C6 | −0.1 (8) |
O2—Ni—N2—C4 | 20.1 (6) | N3—C2—C3—C4 | 0.6 (6) |
N4—Ni—N2—C4 | −164.6 (5) | C6—C2—C3—C4 | 177.7 (6) |
O1—Ni—N2—C4 | −71.6 (5) | N3—N2—C4—C3 | 1.4 (5) |
N1—Ni—N2—C4 | −152.8 (6) | Ni—N2—C4—C3 | 165.0 (4) |
O4—Ni—N2—C4 | 114.2 (5) | N3—N2—C4—C5 | −179.1 (4) |
O2—Ni—N2—N3 | −176.8 (3) | Ni—N2—C4—C5 | −15.5 (8) |
N4—Ni—N2—N3 | −1.5 (6) | C2—C3—C4—N2 | −1.3 (6) |
O1—Ni—N2—N3 | 91.5 (3) | C2—C3—C4—C5 | 179.3 (5) |
N1—Ni—N2—N3 | 10.3 (3) | C8—N5—C7—N1 | −157.5 (5) |
O4—Ni—N2—N3 | −82.7 (3) | N4—N5—C7—N1 | 36.8 (6) |
C4—N2—N3—C2 | −1.1 (5) | C1—N1—C7—N5 | −155.8 (4) |
Ni—N2—N3—C2 | −170.1 (3) | C13—N1—C7—N5 | 76.5 (5) |
C4—N2—N3—C1 | −178.5 (4) | Ni—N1—C7—N5 | −41.0 (4) |
Ni—N2—N3—C1 | 12.5 (5) | N4—N5—C8—C9 | −0.9 (6) |
O2—Ni—N4—C10 | −4.3 (6) | C7—N5—C8—C9 | −167.4 (5) |
N2—Ni—N4—C10 | −179.7 (5) | N4—N5—C8—C12 | 177.7 (5) |
O1—Ni—N4—C10 | 87.6 (6) | C7—N5—C8—C12 | 11.2 (8) |
N1—Ni—N4—C10 | 168.6 (6) | N5—C8—C9—C10 | 0.4 (6) |
O4—Ni—N4—C10 | −98.5 (6) | C12—C8—C9—C10 | −178.0 (6) |
O2—Ni—N4—N5 | 176.8 (3) | N5—N4—C10—C9 | −0.7 (5) |
N2—Ni—N4—N5 | 1.4 (6) | Ni—N4—C10—C9 | −179.7 (4) |
O1—Ni—N4—N5 | −91.3 (3) | N5—N4—C10—C11 | −179.9 (4) |
N1—Ni—N4—N5 | −10.3 (3) | Ni—N4—C10—C11 | 1.2 (8) |
O4—Ni—N4—N5 | 82.6 (3) | C8—C9—C10—N4 | 0.2 (6) |
C10—N4—N5—C8 | 1.0 (5) | C8—C9—C10—C11 | 179.2 (5) |
Ni—N4—N5—C8 | −179.6 (3) | C7—N1—C13—C14 | −143.8 (4) |
C10—N4—N5—C7 | 169.0 (4) | C1—N1—C13—C14 | 89.8 (5) |
Ni—N4—N5—C7 | −11.7 (5) | Ni—N1—C13—C14 | −27.7 (5) |
O2—Ni—O1—C14 | −155.1 (3) | Ni—O1—C14—C13 | −46.3 (4) |
N4—Ni—O1—C14 | 105.7 (3) | N1—C13—C14—O1 | 49.7 (5) |
N2—Ni—O1—C14 | −54.6 (3) | Ni—O2—C15—O3 | 7.7 (7) |
N1—Ni—O1—C14 | 25.3 (3) | Ni—O2—C15—C16 | −172.5 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H26···O3i | 0.86 (1) | 1.80 (1) | 2.631 (10) | 163 (1) |
O4—H27···O5ii | 0.86 (1) | 2.03 (1) | 2.882 (10) | 171 (1) |
O4—H28···O3 | 0.86 (1) | 1.87 (1) | 2.684 (10) | 158 (5) |
O5—H29···O11′ | 0.86 (1) | 1.84 (1) | 2.695 (10) | 174 (1) |
O5—H29···O11 | 0.86 (1) | 2.09 (1) | 2.940 (10) | 168 (1) |
O5—H30···O12′iii | 0.86 (1) | 2.59 (1) | 3.162 (10) | 125 (1) |
Symmetry codes: (i) −x−1, y+1/2, −z+3/2; (ii) x−1, y, z; (iii) −x, −y+2, −z+2. |
Experimental details
Crystal data | |
Chemical formula | [Ni(C2H3O2)(C14H23N5O)(H2O)]ClO4·H2O |
Mr | 530.61 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 9.6055 (11), 9.9889 (11), 24.258 (3) |
β (°) | 90.284 (2) |
V (Å3) | 2327.5 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.00 |
Crystal size (mm) | 0.43 × 0.37 × 0.21 |
Data collection | |
Diffractometer | Bruker APEX CCD |
Absorption correction | Empirical (using intensity measurements) (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.732, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13249, 5057, 2284 |
Rint | 0.082 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.059, 0.142, 0.82 |
No. of reflections | 5057 |
No. of parameters | 310 |
No. of restraints | 26 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.66, −0.50 |
Computer programs: SMART (Bruker, 2000), SAINT (Bruker, 2000), SHELXTL (Sheldrick, 2008) and publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H26···O3i | 0.863 (10) | 1.795 (10) | 2.631 (10) | 163 (1) |
O4—H27···O5ii | 0.858 (10) | 2.031 (10) | 2.882 (10) | 171 (1) |
O4—H28···O3 | 0.856 (10) | 1.872 (10) | 2.684 (10) | 158 (5) |
O5—H29···O11' | 0.861 (10) | 1.837 (10) | 2.695 (10) | 174 (1) |
O5—H29···O11 | 0.861 (10) | 2.092 (10) | 2.940 (10) | 168 (1) |
O5—H30···O12'iii | 0.862 (10) | 2.585 (10) | 3.162 (10) | 125 (1) |
Symmetry codes: (i) −x−1, y+1/2, −z+3/2; (ii) x−1, y, z; (iii) −x, −y+2, −z+2. |
Acknowledgements
The authors thank Professor D.-J. Xu, Zhejiang University, China, for his helpful suggestions.
References
Bruker (2000). SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Koike, T., Kajitani, S., Nakamura, I., Kimura, E. & Shiro, M. (1995). J. Am. Chem. Soc. 117, 1210–1219. CSD CrossRef CAS Web of Science Google Scholar
Lipscomb, W. N. & Sträter, N. (1996). Chem. Rev. 96, 2375–2434. CrossRef PubMed CAS Web of Science Google Scholar
Malachowski, M. R., Davidson, M. G. & Davis, J. D. (1992). Heterocycles, 34, 1227–1230. CAS Google Scholar
Sheldrick, G. M. (2003). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Shin, J. W., Rowthu, S. R., Hyun, M. Y., Song, Y. J., Kim, C., Kim, B. G. & Min, K. S. (2011). Dalton Trans. 40, 5762–5773. Web of Science CSD CrossRef CAS PubMed Google Scholar
Sundaravel, K., Sankaralingam, M., Suresh, E. & Palaniandavar, M. (2011). Dalton Trans. 40, 8444–8458. Web of Science CSD CrossRef CAS PubMed Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
Xia, J., Xu, Y., Li, S., Sun, W., Yu, K. & Tang, W. (2001). Inorg. Chem. 40, 2394–2401. Web of Science CSD CrossRef PubMed CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
ZnII-bound alkoxides, resulting from the deprotonation of the ZnII-coordinated alcoholic hydroxides in ZnII-containing enzymes (Lipscomb & Sträter, 1996), usually act as nucleophiles to attack the substrates (e.g. phosphates, CO2, and carboxy esters). Polyamines with a pendant ethoxyl group can mimic the chemical surroundings of ZnII in the active site of the ZnII-containing enzymes (Koike et al., 1995). This encouraged us to investigate the coordination chemistry of transition metal ions with a new ligand containing a N3O donor set. In this work, N,N-bis(3,5-dimethyl-pyrazol-1-yl-methylene)aminoethanol (Malachowski et al., 1992) was reacted with nickel acetate in the presence of sodium perchlorate to yield the title complex as blue crystals in 68% yield. Related structures have been reported previously (Shin et al., 2011; Sundaravel et al., 2011; Xia et al., 2001).
In the structure, the NiII cation has a six-coordinated geometry consisting of three N atoms and an O atom from the organic ligand, and two O atoms from a water molecule and an acetate (Fig. 1). The Ni—Npyrazolyl bond distances are 2.071 (4) and 2.044 (4) Å, which are shorter than the Ni—Namino bond length (2.124 (3) Å). The Ni—Oacetate bond distance is 1.999 (3) Å, which is about 0.1 Å shorter than those of Ni—Oalcohol (2.097 (3) Å) and Ni—Owater (2.126 (4) Å). The cis bond angles are deviate from 90° by about 10°, and the trans bond angles deviate from 180° by about 20°. Therefore, the coordination geometry of the NiII centre is a distorted octahedron. In the crystal, there are O—H···O hydrogen bonds. The unit contents are illustrated in Fig. 2.