organic compounds
(E)-Benzaldehyde O-{[3-(pyridin-3-yl)isoxazol-5-yl]methyl}oxime
aDepartamento de Química, Facultad de Ciencias, Universidad del Valle, Apartado 25360, Santiago de Cali, Colombia, bLaboratorio de Sintesis Orgánica, Facultad de Ciencias, Pontificia Universidad Javeriana, Bogota, DC, Colombia, and cWestCHEM, Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow G1 1XL, Scotland
*Correspondence e-mail: rodimo26@yahoo.es
The 16H13N3O2, contains two independent molecules in which the pyridine and benzene rings form dihedral angles of 81.7 (2) and 79.8 (2)°, indicating the twist in the molecules. In the crystal, weak C—H⋯N interactions link molecules into chains along [100].
of the title compound, CRelated literature
For organic synthesis of isoxazole systems, see: Giomi et al. (2008); Chukanov & Reznikov (2011). For the biological activity of isoxazole systems, see: Meyers et al. (2011); Basappa et al. (2003); Lee et al. (2009); Talley et al. (2000); Farrerons et al. (2003); Edgard et al. (2004); For hydrogen-bond graph-set motifs, see: Etter (1990). For hydrogen bonding, see: Nardelli (1995).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: CrystalClear-SM Expert (Rigaku, 2011); cell CrystalClear-SM Expert; data reduction: CrystalClear-SM Expert; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and Mercury (Macrae et al., 2006); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536812010732/vm2159sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812010732/vm2159Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812010732/vm2159Isup3.cml
A stirred solution of (E)-benzaldehyde O-prop-2-ynyl oxime (318 mg, 2 mmol) and (E)- nicotinaldehyde oxime (122 mg, 1 mmol) in dichloromethane (4 ml) was placed on an ice bath during 5 minutes and then NaOCl in aqueous solution 5.25% (3 ml, 2.5 mmol) was added. The mixture was allowed to react for 30 minutes. After this period the phases were separated and the aqueous phase was extracted with AcOEt. The combined organic phases were dried with anhydrous Na2SO4, filtered and concentrated under low pressure. Purification of the crude mixture by flash
with 25% (v/v) AcOEt/hexane yielded a white solid (126 mg, 45% yield, mp 322 (1) K).(E)-benzaldehyde O-(3-(pyridin-3-yl)isoxazol-5-yl)methyl oxime 1H NMR (300 MHz) δ, 9.04 (d, 1H), 8.70 (dd, 1H), 8.20 (ddd, 1H), 8.19 (s, 1H), 7.63–7.60 (m, 2H), 7.46–7.38 (m, 4H), 6.69 (t, 1H), 5.34 (d, 2H). 13C-NMR δ, 170.25, 159.10, 150.75, 150.45, 147.74, 134.31, 131.45, 130.37, 128.78, 127.30, 123.86, 101.24, 66.66. MS—EI M+ 279.1, 159.1 (100%).
The H-atoms were positioned geometrically [C—H= 0.95 Å for aromatic and C—H= 0.99 Å for methylene] and refined with Uiso(H) 1.2 and 1.5 times Ueq of the parent atom, respectively.
The isoxazoles are five-membered heterocyclic systems with one oxygen atom and one nitrogen atom at adjacent positions. These compounds are used as intermediates in organic synthesis due to their easy transformation into important groups such as enamino γ-amino and β-hydroxy (Giomi et al., 2008; Chukanov & Reznikov, 2011).
enoximes, 1,3-dicarbonyl compounds,They also have been widely used in the synthesis of
and other natural compounds. Many derivatives exhibit interesting applications in various fields such as agriculture, industry, and medicine. The wide spectrum of biological activities characteristic of these systems, comprises analgesic (Meyers et al., 2011), antifungal (Basappa et al., 2003), antiviral (Lee et al., 2009), anti-inflammatory (Talley et al., 2000), and antiobesity (Giomi et al., 2008) activities.In our research group, we are interested in the synthesis of nitrogen containing compounds with potential biological activity such as isoxazoles and
The (E)-benzaldehyde O-(3-(pyridin-3-yl)isoxazol-5-yl)methyl oxime, (I), is an isoxazole analogue exhibiting important antibiotic (Farrerons et al., 2003) and immunomodulator properties (Edgard et al., 2004). On the other hand, the oxime function is an important pharmacophore group present in a wide variety of biologically active compounds, such as 3-oxiconazole and cefuroxime. Compound I was synthesized via 1,3-dipolar of an alkyne and a nitrile oxide obtained by treatment of (E)-nicotinaldehyde oxime with NaOCl. The reaction proceeded with high regioselectivity affording only the 5-substituted isomer in 45% yield. The molecular structure of I is shown in Fig. 1. The of (I) contains two independent molecules (1) and (2). In both molecules, the isoxazole and pyridine rings are almost coplanar (r.m.s. deviation of all non-hydrogen atoms = 0.0044 Å). The dihedral angles between the mean planes defined by isoxazole and pyridine rings are 3.0 (3)° in molecule 1 and 5.8 (3)° in molecule 2. The pyridine and benzene rings form a dihedral angle of 81.7 (2)° in molecule 1 and 79.8 (2)° in molecule 2 indicating the twist in the molecules. The torsion angles of C8—O1—N1—C1 in (1) and C24—O3—N4—C17 in (2) are 176.2 (3) and -173.8 (3)° respectively and the least-squares fit of C2 C1 N1 O1 C8 C9 plane in (1) and C18 C17 N4 O3 C24 C25 plane in (2) show a r.m.s deviation of fitted atoms of 0.2117 and 0.2090 Å respectively, indicating the similar conformation of both molecules. The crystal packing is stabilized by weak C—H···N interactions (see Table 1, Nardelli, 1995). The molecules 1 and 2, are intertwined forming C(6) (Etter, 1990) chains of molecules along [100], see Fig. 2.For organic synthesis of isoxazole systems, see: Giomi et al. (2008); Chukanov & Reznikov (2011). For the biological activity of isoxazole systems, see: Meyers et al. (2011); Basappa et al. (2003); Lee et al. (2009); Talley et al. (2000); Farrerons et al. (2003); Edgard et al. (2004); For hydrogen-bond graph-set motifs, see: Etter (1990). For hydrogen bonding, see: Nardelli (1995).
Data collection: CrystalClear-SM Expert (Rigaku, 2011); cell
CrystalClear-SM Expert (Rigaku, 2011); data reduction: CrystalClear-SM Expert (Rigaku, 2011); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and Mercury (Macrae et al., 2006); software used to prepare material for publication: WinGX (Farrugia, 1999).C16H13N3O2 | Dx = 1.352 Mg m−3 |
Mr = 279.29 | Melting point: 322(1) K |
Orthorhombic, Pna21 | Mo Kα radiation, λ = 0.71075 Å |
Hall symbol: P 2c -2n | Cell parameters from 4687 reflections |
a = 19.364 (12) Å | θ = 2.5–25.1° |
b = 4.459 (3) Å | µ = 0.09 mm−1 |
c = 31.775 (19) Å | T = 100 K |
V = 2744 (3) Å3 | Needle, colourless |
Z = 8 | 0.40 × 0.01 × 0.01 mm |
F(000) = 1168 |
Rigaku Saturn724+ diffractometer | 3544 reflections with I > 2σ(I) |
Radiation source: Rotating Anode | Rint = 0.086 |
Confocal monochromator | θmax = 25.0°, θmin = 3.8° |
Detector resolution: 28.5714 pixels mm-1 | h = −22→20 |
profile data from ω–scans | k = −4→5 |
17573 measured reflections | l = −37→37 |
4762 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.059 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.136 | H-atom parameters constrained |
S = 0.99 | w = 1/[σ2(Fo2) + (0.0521P)2] where P = (Fo2 + 2Fc2)/3 |
4762 reflections | (Δ/σ)max < 0.001 |
379 parameters | Δρmax = 0.32 e Å−3 |
1 restraint | Δρmin = −0.25 e Å−3 |
C16H13N3O2 | V = 2744 (3) Å3 |
Mr = 279.29 | Z = 8 |
Orthorhombic, Pna21 | Mo Kα radiation |
a = 19.364 (12) Å | µ = 0.09 mm−1 |
b = 4.459 (3) Å | T = 100 K |
c = 31.775 (19) Å | 0.40 × 0.01 × 0.01 mm |
Rigaku Saturn724+ diffractometer | 3544 reflections with I > 2σ(I) |
17573 measured reflections | Rint = 0.086 |
4762 independent reflections |
R[F2 > 2σ(F2)] = 0.059 | 1 restraint |
wR(F2) = 0.136 | H-atom parameters constrained |
S = 0.99 | Δρmax = 0.32 e Å−3 |
4762 reflections | Δρmin = −0.25 e Å−3 |
379 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.42469 (12) | 1.0263 (6) | −0.10487 (8) | 0.0291 (6) | |
O2 | 0.54055 (14) | 0.8039 (6) | −0.04845 (8) | 0.0312 (7) | |
O3 | 0.66365 (12) | 1.0298 (6) | 0.27422 (8) | 0.0289 (6) | |
O4 | 0.78145 (14) | 0.8318 (6) | 0.21677 (8) | 0.0341 (7) | |
N1 | 0.36765 (16) | 0.8518 (7) | −0.08969 (10) | 0.0272 (8) | |
N2 | 0.56013 (16) | 0.6236 (8) | −0.01381 (9) | 0.0310 (8) | |
N3 | 0.57737 (19) | 0.2015 (7) | 0.10467 (11) | 0.0317 (8) | |
N4 | 0.60742 (16) | 0.8498 (7) | 0.25889 (10) | 0.0283 (8) | |
N5 | 0.80334 (18) | 0.6730 (8) | 0.18076 (10) | 0.0335 (9) | |
N6 | 0.82896 (17) | 0.3085 (9) | 0.05894 (11) | 0.0363 (9) | |
C1 | 0.3367 (2) | 0.7268 (9) | −0.12076 (13) | 0.0251 (9) | |
H1 | 0.3528 | 0.7638 | −0.1485 | 0.030* | |
C2 | 0.27783 (18) | 0.5302 (8) | −0.11453 (11) | 0.0236 (9) | |
C3 | 0.25108 (19) | 0.3751 (9) | −0.14916 (12) | 0.0268 (9) | |
H3 | 0.2716 | 0.4005 | −0.1761 | 0.032* | |
C4 | 0.1950 (2) | 0.1849 (9) | −0.14465 (14) | 0.0335 (10) | |
H4 | 0.1774 | 0.0803 | −0.1684 | 0.040* | |
C5 | 0.1645 (2) | 0.1470 (10) | −0.10568 (13) | 0.0350 (10) | |
H5 | 0.1262 | 0.0156 | −0.1027 | 0.042* | |
C6 | 0.1894 (2) | 0.2993 (10) | −0.07096 (13) | 0.0328 (11) | |
H6 | 0.1679 | 0.2754 | −0.0443 | 0.039* | |
C7 | 0.2467 (2) | 0.4896 (9) | −0.07537 (12) | 0.0304 (9) | |
H7 | 0.2644 | 0.5917 | −0.0515 | 0.037* | |
C8 | 0.4554 (2) | 1.1802 (9) | −0.06927 (12) | 0.0290 (10) | |
H8A | 0.4201 | 1.3090 | −0.0558 | 0.035* | |
H8B | 0.4932 | 1.3113 | −0.0794 | 0.035* | |
C9 | 0.48330 (17) | 0.9676 (8) | −0.03760 (11) | 0.0222 (8) | |
C10 | 0.4652 (2) | 0.9032 (9) | 0.00232 (11) | 0.0282 (9) | |
H10 | 0.4280 | 0.9851 | 0.0180 | 0.034* | |
C11 | 0.51395 (19) | 0.6865 (9) | 0.01587 (12) | 0.0226 (9) | |
C12 | 0.51848 (18) | 0.5373 (9) | 0.05737 (12) | 0.0261 (9) | |
C13 | 0.47154 (19) | 0.6129 (10) | 0.08933 (12) | 0.0303 (10) | |
H13 | 0.4355 | 0.7529 | 0.0842 | 0.036* | |
C14 | 0.47866 (19) | 0.4803 (10) | 0.12829 (13) | 0.0345 (10) | |
H14 | 0.4474 | 0.5266 | 0.1504 | 0.041* | |
C15 | 0.5324 (2) | 0.2773 (10) | 0.13475 (13) | 0.0347 (10) | |
H15 | 0.5373 | 0.1889 | 0.1618 | 0.042* | |
C16 | 0.5701 (2) | 0.3278 (9) | 0.06674 (12) | 0.0294 (9) | |
H16 | 0.6014 | 0.2725 | 0.0451 | 0.035* | |
C17 | 0.5772 (2) | 0.7288 (9) | 0.29060 (12) | 0.0248 (10) | |
H17 | 0.5929 | 0.7721 | 0.3183 | 0.030* | |
C18 | 0.51797 (18) | 0.5220 (8) | 0.28453 (11) | 0.0240 (9) | |
C19 | 0.4886 (2) | 0.4702 (9) | 0.24531 (12) | 0.0306 (10) | |
H19 | 0.5060 | 0.5698 | 0.2211 | 0.037* | |
C20 | 0.4334 (2) | 0.2713 (9) | 0.24168 (13) | 0.0311 (10) | |
H20 | 0.4138 | 0.2329 | 0.2148 | 0.037* | |
C21 | 0.40688 (19) | 0.1297 (9) | 0.27672 (12) | 0.0318 (10) | |
H21 | 0.3689 | −0.0038 | 0.2740 | 0.038* | |
C22 | 0.4360 (2) | 0.1830 (10) | 0.31618 (12) | 0.0295 (10) | |
H22 | 0.4181 | 0.0857 | 0.3404 | 0.035* | |
C23 | 0.4910 (2) | 0.3773 (9) | 0.31983 (13) | 0.0291 (9) | |
H23 | 0.5109 | 0.4131 | 0.3467 | 0.035* | |
C24 | 0.6926 (2) | 1.1897 (9) | 0.23951 (12) | 0.0296 (10) | |
H24A | 0.7290 | 1.3259 | 0.2501 | 0.036* | |
H24B | 0.6561 | 1.3147 | 0.2265 | 0.036* | |
C25 | 0.72282 (18) | 0.9900 (9) | 0.20662 (12) | 0.0253 (9) | |
C26 | 0.7059 (2) | 0.9344 (9) | 0.16578 (12) | 0.0279 (9) | |
H26 | 0.6675 | 1.0106 | 0.1505 | 0.034* | |
C27 | 0.7574 (2) | 0.7403 (9) | 0.15124 (13) | 0.0246 (9) | |
C28 | 0.76501 (19) | 0.6134 (9) | 0.10804 (12) | 0.0266 (9) | |
C29 | 0.7201 (2) | 0.7057 (10) | 0.07652 (12) | 0.0319 (10) | |
H29 | 0.6832 | 0.8394 | 0.0824 | 0.038* | |
C30 | 0.7309 (2) | 0.5954 (10) | 0.03557 (13) | 0.0376 (10) | |
H30 | 0.7012 | 0.6526 | 0.0132 | 0.045* | |
C31 | 0.7852 (2) | 0.4038 (11) | 0.02849 (13) | 0.0397 (11) | |
H31 | 0.7924 | 0.3338 | 0.0006 | 0.048* | |
C32 | 0.8173 (2) | 0.4122 (10) | 0.09790 (12) | 0.0326 (10) | |
H32 | 0.8465 | 0.3441 | 0.1199 | 0.039* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0330 (15) | 0.0331 (17) | 0.0211 (14) | −0.0047 (12) | −0.0017 (11) | 0.0032 (12) |
O2 | 0.0334 (16) | 0.0400 (18) | 0.0201 (16) | 0.0057 (13) | 0.0006 (13) | 0.0018 (12) |
O3 | 0.0346 (15) | 0.0343 (18) | 0.0179 (14) | −0.0090 (12) | 0.0007 (11) | −0.0008 (12) |
O4 | 0.0330 (17) | 0.045 (2) | 0.0239 (16) | −0.0007 (14) | −0.0060 (12) | −0.0055 (13) |
N1 | 0.0316 (19) | 0.028 (2) | 0.0220 (18) | 0.0003 (15) | −0.0010 (14) | 0.0018 (14) |
N2 | 0.033 (2) | 0.041 (2) | 0.0196 (18) | 0.0037 (16) | −0.0030 (15) | 0.0085 (15) |
N3 | 0.036 (2) | 0.038 (2) | 0.0212 (19) | 0.0052 (16) | −0.0026 (15) | 0.0035 (16) |
N4 | 0.0289 (18) | 0.030 (2) | 0.0260 (19) | −0.0003 (15) | 0.0003 (15) | −0.0065 (16) |
N5 | 0.034 (2) | 0.046 (2) | 0.0210 (18) | 0.0077 (15) | −0.0015 (14) | −0.0038 (16) |
N6 | 0.0274 (19) | 0.053 (3) | 0.029 (2) | 0.0053 (16) | 0.0036 (16) | −0.0066 (17) |
C1 | 0.032 (2) | 0.023 (2) | 0.020 (2) | 0.0047 (17) | −0.0016 (17) | 0.0012 (16) |
C2 | 0.027 (2) | 0.020 (2) | 0.024 (2) | 0.0047 (16) | −0.0036 (16) | 0.0051 (16) |
C3 | 0.031 (2) | 0.028 (2) | 0.021 (2) | 0.0078 (17) | 0.0020 (17) | 0.0032 (18) |
C4 | 0.037 (3) | 0.028 (3) | 0.035 (3) | −0.0016 (19) | −0.010 (2) | 0.004 (2) |
C5 | 0.028 (2) | 0.036 (3) | 0.041 (3) | −0.0002 (18) | 0.000 (2) | 0.008 (2) |
C6 | 0.029 (2) | 0.039 (3) | 0.031 (3) | 0.006 (2) | 0.003 (2) | 0.0066 (19) |
C7 | 0.037 (2) | 0.031 (3) | 0.023 (2) | 0.0008 (18) | −0.0017 (17) | 0.0052 (18) |
C8 | 0.037 (2) | 0.031 (3) | 0.019 (2) | −0.0045 (19) | −0.0066 (17) | 0.0017 (17) |
C9 | 0.023 (2) | 0.020 (2) | 0.024 (2) | −0.0016 (16) | −0.0039 (16) | −0.0039 (15) |
C10 | 0.028 (2) | 0.039 (3) | 0.018 (2) | 0.0017 (18) | 0.0031 (16) | −0.0046 (17) |
C11 | 0.024 (2) | 0.026 (2) | 0.018 (2) | −0.0064 (16) | 0.0026 (16) | 0.0011 (16) |
C12 | 0.025 (2) | 0.032 (2) | 0.0208 (19) | −0.0007 (17) | −0.0051 (16) | −0.0038 (17) |
C13 | 0.029 (2) | 0.038 (3) | 0.024 (2) | 0.0004 (18) | 0.0002 (17) | 0.0034 (18) |
C14 | 0.033 (2) | 0.046 (3) | 0.024 (2) | −0.001 (2) | −0.0008 (18) | −0.0052 (18) |
C15 | 0.041 (2) | 0.044 (3) | 0.019 (2) | −0.002 (2) | 0.0017 (18) | 0.0037 (18) |
C16 | 0.026 (2) | 0.035 (3) | 0.027 (2) | −0.0025 (18) | −0.0054 (16) | 0.0008 (18) |
C17 | 0.036 (2) | 0.025 (2) | 0.014 (2) | 0.0029 (17) | 0.0004 (17) | −0.0042 (16) |
C18 | 0.033 (2) | 0.015 (2) | 0.024 (2) | 0.0027 (16) | 0.0024 (17) | −0.0062 (15) |
C19 | 0.033 (2) | 0.033 (3) | 0.025 (2) | 0.0061 (19) | 0.0018 (18) | 0.0039 (18) |
C20 | 0.035 (2) | 0.034 (3) | 0.025 (2) | −0.0041 (19) | −0.0078 (19) | −0.0029 (17) |
C21 | 0.027 (2) | 0.036 (3) | 0.032 (2) | 0.0031 (18) | 0.003 (2) | −0.005 (2) |
C22 | 0.027 (2) | 0.040 (3) | 0.022 (2) | 0.0090 (18) | 0.0093 (18) | 0.0007 (18) |
C23 | 0.034 (2) | 0.029 (3) | 0.024 (2) | 0.0014 (18) | 0.0052 (18) | −0.0033 (18) |
C24 | 0.035 (2) | 0.030 (2) | 0.024 (2) | −0.0016 (18) | 0.0057 (18) | 0.0065 (18) |
C25 | 0.031 (2) | 0.021 (2) | 0.024 (2) | −0.0023 (16) | 0.0039 (16) | 0.0039 (16) |
C26 | 0.028 (2) | 0.030 (2) | 0.026 (2) | 0.0018 (18) | −0.0011 (16) | 0.0017 (17) |
C27 | 0.028 (2) | 0.025 (2) | 0.020 (2) | −0.0051 (17) | 0.0043 (17) | 0.0035 (15) |
C28 | 0.027 (2) | 0.028 (2) | 0.025 (2) | −0.0042 (17) | 0.0024 (16) | 0.0010 (17) |
C29 | 0.029 (2) | 0.044 (3) | 0.023 (2) | 0.0012 (19) | 0.0037 (17) | −0.0007 (19) |
C30 | 0.037 (2) | 0.050 (3) | 0.025 (2) | −0.002 (2) | −0.0027 (19) | −0.004 (2) |
C31 | 0.033 (2) | 0.062 (3) | 0.025 (2) | −0.002 (2) | 0.0015 (19) | −0.008 (2) |
C32 | 0.032 (2) | 0.042 (3) | 0.023 (2) | −0.002 (2) | 0.0023 (17) | 0.0002 (19) |
O1—N1 | 1.435 (4) | C12—C16 | 1.400 (5) |
O1—C8 | 1.451 (5) | C12—C13 | 1.404 (5) |
O2—C9 | 1.371 (4) | C13—C14 | 1.379 (5) |
O2—N2 | 1.415 (4) | C13—H13 | 0.9500 |
O3—C24 | 1.428 (5) | C14—C15 | 1.395 (6) |
O3—N4 | 1.438 (4) | C14—H14 | 0.9500 |
O4—C25 | 1.375 (4) | C15—H15 | 0.9500 |
O4—N5 | 1.411 (4) | C16—H16 | 0.9500 |
N1—C1 | 1.282 (5) | C17—C18 | 1.484 (5) |
N2—C11 | 1.330 (5) | C17—H17 | 0.9500 |
N3—C15 | 1.336 (5) | C18—C19 | 1.390 (5) |
N3—C16 | 1.338 (5) | C18—C23 | 1.395 (5) |
N4—C17 | 1.284 (5) | C19—C20 | 1.394 (6) |
N5—C27 | 1.327 (5) | C19—H19 | 0.9500 |
N6—C32 | 1.341 (5) | C20—C21 | 1.379 (6) |
N6—C31 | 1.355 (5) | C20—H20 | 0.9500 |
C1—C2 | 1.452 (5) | C21—C22 | 1.396 (5) |
C1—H1 | 0.9500 | C21—H21 | 0.9500 |
C2—C7 | 1.394 (5) | C22—C23 | 1.378 (6) |
C2—C3 | 1.399 (5) | C22—H22 | 0.9500 |
C3—C4 | 1.386 (6) | C23—H23 | 0.9500 |
C3—H3 | 0.9500 | C24—C25 | 1.493 (5) |
C4—C5 | 1.382 (6) | C24—H24A | 0.9900 |
C4—H4 | 0.9500 | C24—H24B | 0.9900 |
C5—C6 | 1.383 (6) | C25—C26 | 1.361 (5) |
C5—H5 | 0.9500 | C26—C27 | 1.400 (6) |
C6—C7 | 1.404 (6) | C26—H26 | 0.9500 |
C6—H6 | 0.9500 | C27—C28 | 1.492 (6) |
C7—H7 | 0.9500 | C28—C29 | 1.388 (5) |
C8—C9 | 1.484 (5) | C28—C32 | 1.391 (6) |
C8—H8A | 0.9900 | C29—C30 | 1.407 (5) |
C8—H8B | 0.9900 | C29—H29 | 0.9500 |
C9—C10 | 1.347 (5) | C30—C31 | 1.373 (5) |
C10—C11 | 1.417 (5) | C30—H30 | 0.9500 |
C10—H10 | 0.9500 | C31—H31 | 0.9500 |
C11—C12 | 1.479 (5) | C32—H32 | 0.9500 |
N1—O1—C8 | 108.1 (3) | N3—C15—H15 | 118.5 |
C9—O2—N2 | 108.9 (3) | C14—C15—H15 | 118.5 |
C24—O3—N4 | 108.3 (3) | N3—C16—C12 | 123.2 (4) |
C25—O4—N5 | 108.4 (3) | N3—C16—H16 | 118.4 |
C1—N1—O1 | 109.6 (3) | C12—C16—H16 | 118.4 |
C11—N2—O2 | 104.6 (3) | N4—C17—C18 | 120.8 (3) |
C15—N3—C16 | 118.0 (4) | N4—C17—H17 | 119.6 |
C17—N4—O3 | 108.3 (3) | C18—C17—H17 | 119.6 |
C27—N5—O4 | 105.0 (3) | C19—C18—C23 | 119.4 (3) |
C32—N6—C31 | 116.5 (4) | C19—C18—C17 | 122.4 (3) |
N1—C1—C2 | 121.6 (4) | C23—C18—C17 | 118.2 (3) |
N1—C1—H1 | 119.2 | C18—C19—C20 | 119.6 (4) |
C2—C1—H1 | 119.2 | C18—C19—H19 | 120.2 |
C7—C2—C3 | 118.5 (3) | C20—C19—H19 | 120.2 |
C7—C2—C1 | 122.7 (4) | C21—C20—C19 | 120.7 (4) |
C3—C2—C1 | 118.8 (3) | C21—C20—H20 | 119.7 |
C4—C3—C2 | 120.7 (4) | C19—C20—H20 | 119.7 |
C4—C3—H3 | 119.6 | C20—C21—C22 | 119.8 (4) |
C2—C3—H3 | 119.6 | C20—C21—H21 | 120.1 |
C5—C4—C3 | 120.2 (4) | C22—C21—H21 | 120.1 |
C5—C4—H4 | 119.9 | C23—C22—C21 | 119.7 (4) |
C3—C4—H4 | 119.9 | C23—C22—H22 | 120.2 |
C4—C5—C6 | 120.4 (4) | C21—C22—H22 | 120.2 |
C4—C5—H5 | 119.8 | C22—C23—C18 | 120.8 (4) |
C6—C5—H5 | 119.8 | C22—C23—H23 | 119.6 |
C5—C6—C7 | 119.5 (4) | C18—C23—H23 | 119.6 |
C5—C6—H6 | 120.2 | O3—C24—C25 | 113.4 (3) |
C7—C6—H6 | 120.2 | O3—C24—H24A | 108.9 |
C2—C7—C6 | 120.6 (4) | C25—C24—H24A | 108.9 |
C2—C7—H7 | 119.7 | O3—C24—H24B | 108.9 |
C6—C7—H7 | 119.7 | C25—C24—H24B | 108.9 |
O1—C8—C9 | 112.1 (3) | H24A—C24—H24B | 107.7 |
O1—C8—H8A | 109.2 | C26—C25—O4 | 109.2 (3) |
C9—C8—H8A | 109.2 | C26—C25—C24 | 132.9 (4) |
O1—C8—H8B | 109.2 | O4—C25—C24 | 117.8 (3) |
C9—C8—H8B | 109.2 | C25—C26—C27 | 104.8 (3) |
H8A—C8—H8B | 107.9 | C25—C26—H26 | 127.6 |
C10—C9—O2 | 109.5 (3) | C27—C26—H26 | 127.6 |
C10—C9—C8 | 132.9 (4) | N5—C27—C26 | 112.6 (4) |
O2—C9—C8 | 117.6 (3) | N5—C27—C28 | 119.9 (4) |
C9—C10—C11 | 105.0 (3) | C26—C27—C28 | 127.5 (4) |
C9—C10—H10 | 127.5 | C29—C28—C32 | 118.7 (4) |
C11—C10—H10 | 127.5 | C29—C28—C27 | 119.3 (4) |
N2—C11—C10 | 112.1 (3) | C32—C28—C27 | 122.0 (3) |
N2—C11—C12 | 119.8 (3) | C28—C29—C30 | 118.0 (4) |
C10—C11—C12 | 128.1 (3) | C28—C29—H29 | 121.0 |
C16—C12—C13 | 117.9 (4) | C30—C29—H29 | 121.0 |
C16—C12—C11 | 122.2 (3) | C31—C30—C29 | 118.9 (4) |
C13—C12—C11 | 119.9 (3) | C31—C30—H30 | 120.5 |
C14—C13—C12 | 118.8 (4) | C29—C30—H30 | 120.5 |
C14—C13—H13 | 120.6 | N6—C31—C30 | 123.8 (4) |
C12—C13—H13 | 120.6 | N6—C31—H31 | 118.1 |
C13—C14—C15 | 119.0 (4) | C30—C31—H31 | 118.1 |
C13—C14—H14 | 120.5 | N6—C32—C28 | 124.0 (4) |
C15—C14—H14 | 120.5 | N6—C32—H32 | 118.0 |
N3—C15—C14 | 123.0 (4) | C28—C32—H32 | 118.0 |
C8—O1—N1—C1 | 176.2 (3) | C13—C12—C16—N3 | −1.3 (6) |
C9—O2—N2—C11 | 0.2 (4) | C11—C12—C16—N3 | 176.5 (4) |
C24—O3—N4—C17 | −173.8 (3) | O3—N4—C17—C18 | −178.3 (3) |
C25—O4—N5—C27 | −0.4 (4) | N4—C17—C18—C19 | −5.9 (6) |
O1—N1—C1—C2 | 178.5 (3) | N4—C17—C18—C23 | 174.6 (4) |
N1—C1—C2—C7 | 7.0 (6) | C23—C18—C19—C20 | −1.0 (6) |
N1—C1—C2—C3 | −173.1 (3) | C17—C18—C19—C20 | 179.5 (4) |
C7—C2—C3—C4 | −0.1 (5) | C18—C19—C20—C21 | 1.2 (6) |
C1—C2—C3—C4 | 179.9 (4) | C19—C20—C21—C22 | −0.8 (6) |
C2—C3—C4—C5 | 0.3 (6) | C20—C21—C22—C23 | 0.1 (6) |
C3—C4—C5—C6 | 0.3 (6) | C21—C22—C23—C18 | 0.1 (6) |
C4—C5—C6—C7 | −1.0 (6) | C19—C18—C23—C22 | 0.4 (6) |
C3—C2—C7—C6 | −0.6 (5) | C17—C18—C23—C22 | 179.9 (4) |
C1—C2—C7—C6 | 179.4 (4) | N4—O3—C24—C25 | −62.8 (4) |
C5—C6—C7—C2 | 1.1 (6) | N5—O4—C25—C26 | 1.0 (4) |
N1—O1—C8—C9 | 62.2 (4) | N5—O4—C25—C24 | −176.6 (3) |
N2—O2—C9—C10 | 0.3 (4) | O3—C24—C25—C26 | 114.7 (5) |
N2—O2—C9—C8 | 178.1 (3) | O3—C24—C25—O4 | −68.4 (4) |
O1—C8—C9—C10 | −113.6 (5) | O4—C25—C26—C27 | −1.1 (4) |
O1—C8—C9—O2 | 69.3 (4) | C24—C25—C26—C27 | 175.9 (4) |
O2—C9—C10—C11 | −0.7 (4) | O4—N5—C27—C26 | −0.3 (5) |
C8—C9—C10—C11 | −178.0 (4) | O4—N5—C27—C28 | 179.1 (3) |
O2—N2—C11—C10 | −0.6 (4) | C25—C26—C27—N5 | 0.9 (5) |
O2—N2—C11—C12 | −179.8 (3) | C25—C26—C27—C28 | −178.5 (4) |
C9—C10—C11—N2 | 0.8 (5) | N5—C27—C28—C29 | −174.5 (4) |
C9—C10—C11—C12 | 179.9 (4) | C26—C27—C28—C29 | 4.8 (6) |
N2—C11—C12—C16 | −0.4 (6) | N5—C27—C28—C32 | 3.3 (6) |
C10—C11—C12—C16 | −179.4 (4) | C26—C27—C28—C32 | −177.4 (4) |
N2—C11—C12—C13 | 177.3 (3) | C32—C28—C29—C30 | −1.4 (6) |
C10—C11—C12—C13 | −1.7 (6) | C27—C28—C29—C30 | 176.4 (4) |
C16—C12—C13—C14 | 0.5 (6) | C28—C29—C30—C31 | −0.3 (6) |
C11—C12—C13—C14 | −177.2 (3) | C32—N6—C31—C30 | −0.1 (7) |
C12—C13—C14—C15 | 0.4 (6) | C29—C30—C31—N6 | 1.1 (7) |
C16—N3—C15—C14 | 0.1 (6) | C31—N6—C32—C28 | −1.8 (6) |
C13—C14—C15—N3 | −0.8 (6) | C29—C28—C32—N6 | 2.6 (6) |
C15—N3—C16—C12 | 0.9 (6) | C27—C28—C32—N6 | −175.2 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
C26—H26···N3i | 0.95 | 2.43 | 3.374 (5) | 174 |
C10—H10···N6ii | 0.95 | 2.49 | 3.443 (5) | 179 |
Symmetry codes: (i) x, y+1, z; (ii) x−1/2, −y+3/2, z. |
Experimental details
Crystal data | |
Chemical formula | C16H13N3O2 |
Mr | 279.29 |
Crystal system, space group | Orthorhombic, Pna21 |
Temperature (K) | 100 |
a, b, c (Å) | 19.364 (12), 4.459 (3), 31.775 (19) |
V (Å3) | 2744 (3) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.40 × 0.01 × 0.01 |
Data collection | |
Diffractometer | Rigaku Saturn724+ |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 17573, 4762, 3544 |
Rint | 0.086 |
(sin θ/λ)max (Å−1) | 0.594 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.059, 0.136, 0.99 |
No. of reflections | 4762 |
No. of parameters | 379 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.32, −0.25 |
Computer programs: CrystalClear-SM Expert (Rigaku, 2011), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997) and Mercury (Macrae et al., 2006), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
C26—H26···N3i | 0.95 | 2.43 | 3.374 (5) | 173.7 |
C10—H10···N6ii | 0.95 | 2.49 | 3.443 (5) | 178.9 |
Symmetry codes: (i) x, y+1, z; (ii) x−1/2, −y+3/2, z. |
Acknowledgements
RMF is grateful to the Spanish Research Council (CSIC) for the use of a free-of-charge licence to the Cambridge Structural Database (Allen, 2002). RMF also thanks the Universidad del Valle, Colombia, and AEL thanks Universidad Javeriana, Colombia, for partial financial support. Thanks are due to the National Crystallography Service at the University of Southampton for the data collection.
References
Allen, F. H. (2002). Acta Cryst. B58, 380–388. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Basappa, M. P., Sadashiva, K., Mantelingu, S., Nanjunda, S. & Rangappa, K. S. (2003). Bioorg. Med. Chem. Lett. 11, 4539–4544. CrossRef CAS Google Scholar
Chukanov, N. V. & Reznikov, V. A. (2011). Russ. Chem. Bull. 60, 379–399. Web of Science CrossRef CAS Google Scholar
Edgard, E., Andres-Gil, J., Dirk, D., Franciscus, D., Matezans-Ballesteros, M. & Alvarez, R. (2004). US Patent 2004-0019059 A1. Google Scholar
Etter, M. (1990). Acc. Chem. Res. 23, 120–126. CrossRef CAS Web of Science Google Scholar
Farrerons, C., Lagunas, C. & Fernandez, A. (2003). Spanish Patent ES 2 180 456 A1. Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838. CrossRef CAS IUCr Journals Google Scholar
Giomi, D., Cordero, F. M., Pisaneschi, F. & Brandi, A. (2008). Comprehensive Heterocyclic Chemistry III, Vol. 4, pp. 365–486. Oxford: Elsevier. Google Scholar
Lee, Y., Park, S. M. & Kim, B. H. (2009). Bioorg. Med. Chem. Lett. 19, 1126–1128. Web of Science CrossRef PubMed CAS Google Scholar
Macrae, C. F., Edgington, P. R., McCabe, P., Pidcock, E., Shields, G. P., Taylor, R., Towler, M. & van de Streek, J. (2006). J. Appl. Cryst. 39, 453–457. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Meyers, M. J., Long, S. A., Pelc, M. J., Wang, J. L., Bowen, S. J., Schweitzer, B. A., Wilcox, M. V., McDonald, J., Smith, S. E., Foltin, S., Rumsey, J., Yang, Y., Walker, M. C., Kamtekar, S., Beidler, D. & Thorarensen, A. (2011). Bioorg. Med. Chem. Lett. 21, 6545–6553. Web of Science CrossRef CAS PubMed Google Scholar
Nardelli, M. (1995). J. Appl. Cryst. 28, 659. CrossRef IUCr Journals Google Scholar
Rigaku (2011). CrystalClear-SM Expert. Rigaku Corporation, Tokyo, Japan. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Talley, J., Brown, D. L., Carter, J. S., Graneto, M. J., Koboldt, C. M., Masferrer, J. L., Perkins, W. E., Rogers, R. S., Shaffer, A. F., Zhang, Y., Zweifel, B. S. & Seibert, K. (2000). J. Med. Chem. 43, 775–777. Web of Science CrossRef PubMed CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The isoxazoles are five-membered heterocyclic systems with one oxygen atom and one nitrogen atom at adjacent positions. These compounds are used as intermediates in organic synthesis due to their easy transformation into important groups such as enamino ketones, enoximes, 1,3-dicarbonyl compounds, γ-amino alcohols, and β-hydroxy nitriles (Giomi et al., 2008; Chukanov & Reznikov, 2011).
They also have been widely used in the synthesis of nucleosides, alkaloids and other natural compounds. Many derivatives exhibit interesting applications in various fields such as agriculture, industry, and medicine. The wide spectrum of biological activities characteristic of these systems, comprises analgesic (Meyers et al., 2011), antifungal (Basappa et al., 2003), antiviral (Lee et al., 2009), anti-inflammatory (Talley et al., 2000), and antiobesity (Giomi et al., 2008) activities.
In our research group, we are interested in the synthesis of nitrogen containing compounds with potential biological activity such as isoxazoles and oximes. The (E)-benzaldehyde O-(3-(pyridin-3-yl)isoxazol-5-yl)methyl oxime, (I), is an isoxazole analogue exhibiting important antibiotic (Farrerons et al., 2003) and immunomodulator properties (Edgard et al., 2004). On the other hand, the oxime function is an important pharmacophore group present in a wide variety of biologically active compounds, such as 3-oxiconazole and cefuroxime. Compound I was synthesized via 1,3-dipolar cycloaddition of an alkyne and a nitrile oxide obtained by treatment of (E)-nicotinaldehyde oxime with NaOCl. The reaction proceeded with high regioselectivity affording only the 5-substituted isomer in 45% yield. The molecular structure of I is shown in Fig. 1. The asymmetric unit of (I) contains two independent molecules (1) and (2). In both molecules, the isoxazole and pyridine rings are almost coplanar (r.m.s. deviation of all non-hydrogen atoms = 0.0044 Å). The dihedral angles between the mean planes defined by isoxazole and pyridine rings are 3.0 (3)° in molecule 1 and 5.8 (3)° in molecule 2. The pyridine and benzene rings form a dihedral angle of 81.7 (2)° in molecule 1 and 79.8 (2)° in molecule 2 indicating the twist in the molecules. The torsion angles of C8—O1—N1—C1 in (1) and C24—O3—N4—C17 in (2) are 176.2 (3) and -173.8 (3)° respectively and the least-squares fit of C2 C1 N1 O1 C8 C9 plane in (1) and C18 C17 N4 O3 C24 C25 plane in (2) show a r.m.s deviation of fitted atoms of 0.2117 and 0.2090 Å respectively, indicating the similar conformation of both molecules. The crystal packing is stabilized by weak C—H···N interactions (see Table 1, Nardelli, 1995). The molecules 1 and 2, are intertwined forming C(6) (Etter, 1990) chains of molecules along [100], see Fig. 2.