organic compounds
(3β,18β,20β)-N-Ethoxycarbonylmethyl-3-nitrato-11-oxoolean-12-ene-29-carboxamide methanol monosolvate
aInstitute of Applied Synthetic Chemistry, Vienna University of Technology, Getreidemarkt 9/163, A-1060 Vienna, Austria, and bInstitute of Chemical Technologies and Analytics, Vienna University of Technology, Getreidemarkt 9/164SC, A-1060 Vienna, Austria
*Correspondence e-mail: kurt.mereiter@tuwien.ac.at
The title compound, C34H52N2O7·CH4O, is the methanol solvate of a difunctionalized derivative of the therapeutic agent 18β-glycyrrhetinic acid, a pentacyclic triterpene. The five six-membered rings of the glycyrrhetinic acid moiety show normal geometries, with four rings in chair conformations and the unsaturated ring in a half-chair conformation. This moiety is substituted by a nitrate ester group and an O-ethylglycine group. In the crystal, the nonsolvent molecules are packed parallel to (010) in a herringbone fashion with the nitrato, ethylglycine and methanol-O atom being proximate. The methanol solvent molecule is anchored via a donated O—H⋯Oacyl and an accepted N—H⋯O hydrogen bond, giving rise to infinite zigzag chains of hydrogen bonds parallel to [100]. Two weak intermolecular C—H⋯O interactions to the methanol and to an acyl oxygen establish links along [100] and [010], respectively.
Related literature
For overviews on the therapeutic aspects of glycyrrhetinic acid, see: Baran et al. (1974); Asl & Hosseinzadeh (2008). For the synthesis of new derivatives of 18β-glycyrrhetinic acid and their effect on 11β-hydroxysteroid dehydrogenase, see: Su et al. (2004); Beseda et al. (2010); Amer et al. (2010). For the of 18β-glycyrrhetinic acid, see: Campsteyn et al. (1977); Alvarez-Larena et al. (2007). For the crystal structures of derivatives of 18β-glycyrrhetinic acid, see: Beseda et al. (2010); Amer et al. (2010); Czollner et al. (2011).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT, SADABS and XPREP (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2006); software used to prepare material for publication: PLATON (Spek, 2009) and publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536812012561/xu5490sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812012561/xu5490Isup2.hkl
To a stirred solution of acetic anhydride (5 ml) and concentrated nitric acid (2 ml) was added N-(ethoxycarbonyl-methyl)-3-hydroxy-11-oxo-olean-12-ene-29-carboxamide (555 mg, 1.0 mmol; compound 26f of Beseda et al., 2010) at 273 K. After 30 min the reaction mixture was dropped to 200 ml of ice water. The solid product obtained was filtered, dried and recrystallized from 3 ml of dichloromethane and 5 ml of n-hexane to yield 400 mg (66.6%) of the desired product as colourless powder. An analytical sample of (I) was then obtained by recrystallization from methanol.
All H atoms were placed in calculated positions and thereafter treated as riding. A torsional parameter was refined for each methyl group. Uiso(H) = 1.2Ueq(Cnon-methyl) and Uiso(H) = 1.5Ueq(Cmethyl) were used. Because of insignificant β-glycyrrhetinic acid is known.
effects, the 4435 Friedel pairs were merged prior to the final The of the parent compound 18Kitagawa, I. (2002). Pure Appl. Chem. 74, 1189–1198.
Claßen-Houben, D., Schuster, D., Da Cunha, T., Odermatt, A., Wolber, G., Jordis, U. & Kueenburg, B. (2009). J. Steroid Biochem. Mol. Biol., 113(3-5), 248–252.
Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT, SADABS and XPREP (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2006); software used to prepare material for publication: PLATON (Spek, 2009) and publCIF (Westrip, 2010).C34H52N2O7·CH4O | F(000) = 1376 |
Mr = 632.82 | Dx = 1.224 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 9832 reflections |
a = 10.1598 (8) Å | θ = 2.4–30.4° |
b = 11.1275 (9) Å | µ = 0.09 mm−1 |
c = 30.387 (2) Å | T = 100 K |
V = 3435.3 (5) Å3 | Plate, colourless |
Z = 4 | 0.55 × 0.53 × 0.15 mm |
Bruker Kappa APEXII CCD diffractometer | 5565 independent reflections |
Radiation source: fine-focus sealed tube | 5044 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.036 |
φ and ω scans | θmax = 30.0°, θmin = 2.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | h = −14→14 |
Tmin = 0.88, Tmax = 1.00 | k = −15→15 |
49017 measured reflections | l = −42→42 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.122 | H-atom parameters constrained |
S = 1.10 | w = 1/[σ2(Fo2) + (0.0659P)2 + 1.0649P] where P = (Fo2 + 2Fc2)/3 |
5565 reflections | (Δ/σ)max < 0.001 |
416 parameters | Δρmax = 0.68 e Å−3 |
0 restraints | Δρmin = −0.38 e Å−3 |
C34H52N2O7·CH4O | V = 3435.3 (5) Å3 |
Mr = 632.82 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 10.1598 (8) Å | µ = 0.09 mm−1 |
b = 11.1275 (9) Å | T = 100 K |
c = 30.387 (2) Å | 0.55 × 0.53 × 0.15 mm |
Bruker Kappa APEXII CCD diffractometer | 5565 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 5044 reflections with I > 2σ(I) |
Tmin = 0.88, Tmax = 1.00 | Rint = 0.036 |
49017 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.122 | H-atom parameters constrained |
S = 1.10 | Δρmax = 0.68 e Å−3 |
5565 reflections | Δρmin = −0.38 e Å−3 |
416 parameters |
Geometry. All e.s.d.'s are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 1.24049 (15) | 0.35130 (14) | 0.11927 (4) | 0.0235 (3) | |
O2 | 1.36996 (17) | 0.22076 (15) | 0.15496 (6) | 0.0312 (4) | |
O3 | 1.43774 (19) | 0.3126 (2) | 0.09603 (6) | 0.0416 (5) | |
O4 | 0.97494 (15) | 0.54091 (15) | 0.30766 (5) | 0.0278 (3) | |
O5 | 0.43899 (16) | 0.36705 (16) | 0.49446 (6) | 0.0332 (4) | |
O6 | 0.7628 (3) | 0.6180 (2) | 0.45042 (6) | 0.0531 (6) | |
O7 | 0.7763 (2) | 0.66683 (18) | 0.52248 (6) | 0.0458 (5) | |
N1 | 1.35858 (19) | 0.28882 (17) | 0.12425 (6) | 0.0266 (4) | |
N2 | 0.64623 (18) | 0.40002 (17) | 0.47119 (6) | 0.0259 (4) | |
H2N | 0.7079 | 0.3830 | 0.4518 | 0.031* | |
C1 | 1.09373 (18) | 0.41293 (17) | 0.23173 (6) | 0.0171 (3) | |
H1A | 1.1245 | 0.4667 | 0.2556 | 0.021* | |
H1B | 1.0903 | 0.3302 | 0.2437 | 0.021* | |
C2 | 1.19274 (18) | 0.41682 (17) | 0.19389 (6) | 0.0181 (3) | |
H2A | 1.2026 | 0.5006 | 0.1835 | 0.022* | |
H2B | 1.2796 | 0.3888 | 0.2045 | 0.022* | |
C3 | 1.14771 (19) | 0.33810 (17) | 0.15614 (6) | 0.0179 (3) | |
H3 | 1.1464 | 0.2523 | 0.1659 | 0.021* | |
C4 | 1.01167 (19) | 0.37181 (18) | 0.13737 (6) | 0.0192 (3) | |
C5 | 0.91408 (18) | 0.37368 (16) | 0.17714 (6) | 0.0162 (3) | |
H5 | 0.9131 | 0.2891 | 0.1883 | 0.019* | |
C6 | 0.77159 (19) | 0.39889 (18) | 0.16342 (6) | 0.0208 (4) | |
H6A | 0.7604 | 0.4858 | 0.1575 | 0.025* | |
H6B | 0.7510 | 0.3544 | 0.1360 | 0.025* | |
C7 | 0.67731 (19) | 0.35989 (18) | 0.20001 (6) | 0.0210 (4) | |
H7A | 0.6826 | 0.2715 | 0.2033 | 0.025* | |
H7B | 0.5863 | 0.3800 | 0.1910 | 0.025* | |
C8 | 0.70534 (17) | 0.41850 (16) | 0.24500 (6) | 0.0152 (3) | |
C9 | 0.85615 (17) | 0.41574 (16) | 0.25560 (6) | 0.0145 (3) | |
H9 | 0.8759 | 0.3294 | 0.2618 | 0.017* | |
C10 | 0.95365 (18) | 0.45125 (15) | 0.21774 (5) | 0.0146 (3) | |
C11 | 0.87786 (18) | 0.47971 (17) | 0.29951 (6) | 0.0180 (3) | |
C12 | 0.77583 (18) | 0.46438 (17) | 0.33337 (6) | 0.0178 (3) | |
H12 | 0.7923 | 0.4972 | 0.3617 | 0.021* | |
C13 | 0.66101 (17) | 0.40716 (16) | 0.32705 (6) | 0.0160 (3) | |
C14 | 0.63076 (18) | 0.34767 (16) | 0.28289 (6) | 0.0159 (3) | |
C15 | 0.48044 (18) | 0.34403 (18) | 0.27359 (6) | 0.0197 (4) | |
H15A | 0.4530 | 0.4229 | 0.2616 | 0.024* | |
H15B | 0.4631 | 0.2828 | 0.2507 | 0.024* | |
C16 | 0.39605 (19) | 0.31545 (18) | 0.31388 (7) | 0.0217 (4) | |
H16A | 0.4151 | 0.2324 | 0.3237 | 0.026* | |
H16B | 0.3020 | 0.3192 | 0.3055 | 0.026* | |
C17 | 0.42072 (18) | 0.40218 (18) | 0.35212 (7) | 0.0200 (4) | |
C18 | 0.56722 (18) | 0.39382 (17) | 0.36569 (6) | 0.0178 (3) | |
H18 | 0.5851 | 0.4618 | 0.3863 | 0.021* | |
C19 | 0.5989 (2) | 0.27590 (18) | 0.39060 (6) | 0.0212 (4) | |
H19A | 0.5889 | 0.2075 | 0.3700 | 0.025* | |
H19B | 0.6921 | 0.2781 | 0.4001 | 0.025* | |
C20 | 0.5117 (2) | 0.25336 (19) | 0.43106 (7) | 0.0242 (4) | |
C21 | 0.3676 (2) | 0.2538 (2) | 0.41571 (8) | 0.0278 (4) | |
H21A | 0.3525 | 0.1853 | 0.3956 | 0.033* | |
H21B | 0.3090 | 0.2437 | 0.4415 | 0.033* | |
C22 | 0.3332 (2) | 0.3711 (2) | 0.39203 (7) | 0.0262 (4) | |
H22A | 0.3390 | 0.4378 | 0.4135 | 0.031* | |
H22B | 0.2407 | 0.3664 | 0.3820 | 0.031* | |
C23 | 0.9709 (2) | 0.2695 (2) | 0.10587 (7) | 0.0273 (4) | |
H23A | 1.0442 | 0.2508 | 0.0861 | 0.041* | |
H23B | 0.8944 | 0.2949 | 0.0885 | 0.041* | |
H23C | 0.9481 | 0.1979 | 0.1230 | 0.041* | |
C24 | 1.0178 (2) | 0.4897 (2) | 0.11115 (7) | 0.0269 (4) | |
H24A | 1.0641 | 0.5508 | 0.1285 | 0.040* | |
H24B | 0.9282 | 0.5174 | 0.1048 | 0.040* | |
H24C | 1.0649 | 0.4761 | 0.0835 | 0.040* | |
C25 | 0.9541 (2) | 0.58783 (17) | 0.20873 (6) | 0.0210 (4) | |
H25A | 0.9410 | 0.6313 | 0.2364 | 0.032* | |
H25B | 0.8829 | 0.6078 | 0.1882 | 0.032* | |
H25C | 1.0388 | 0.6111 | 0.1958 | 0.032* | |
C26 | 0.6570 (2) | 0.54965 (17) | 0.24300 (7) | 0.0209 (4) | |
H26A | 0.6996 | 0.5909 | 0.2183 | 0.031* | |
H26B | 0.6793 | 0.5906 | 0.2706 | 0.031* | |
H26C | 0.5614 | 0.5508 | 0.2389 | 0.031* | |
C27 | 0.6788 (2) | 0.21528 (16) | 0.28652 (7) | 0.0207 (4) | |
H27A | 0.7626 | 0.2129 | 0.3025 | 0.031* | |
H27B | 0.6910 | 0.1819 | 0.2569 | 0.031* | |
H27C | 0.6131 | 0.1676 | 0.3024 | 0.031* | |
C28 | 0.3869 (2) | 0.53116 (18) | 0.33834 (7) | 0.0234 (4) | |
H28A | 0.3980 | 0.5851 | 0.3636 | 0.035* | |
H28B | 0.2955 | 0.5344 | 0.3281 | 0.035* | |
H28C | 0.4457 | 0.5564 | 0.3145 | 0.035* | |
C29 | 0.5290 (2) | 0.34592 (19) | 0.46787 (7) | 0.0241 (4) | |
C30 | 0.5474 (2) | 0.1303 (2) | 0.45119 (8) | 0.0312 (5) | |
H30A | 0.4898 | 0.1139 | 0.4763 | 0.047* | |
H30B | 0.6393 | 0.1314 | 0.4610 | 0.047* | |
H30C | 0.5359 | 0.0673 | 0.4290 | 0.047* | |
C31 | 0.6742 (2) | 0.4853 (2) | 0.50557 (7) | 0.0288 (4) | |
H31A | 0.7311 | 0.4468 | 0.5279 | 0.035* | |
H31B | 0.5908 | 0.5086 | 0.5201 | 0.035* | |
C32 | 0.7418 (3) | 0.5969 (2) | 0.48836 (8) | 0.0343 (5) | |
C33 | 0.8405 (4) | 0.7825 (3) | 0.51337 (11) | 0.0540 (8) | |
H33A | 0.8960 | 0.7756 | 0.4867 | 0.065* | |
H33B | 0.8976 | 0.8052 | 0.5384 | 0.065* | |
C34 | 0.7380 (4) | 0.8759 (3) | 0.50655 (12) | 0.0644 (10) | |
H34A | 0.6815 | 0.8527 | 0.4818 | 0.097* | |
H34B | 0.7803 | 0.9530 | 0.5001 | 0.097* | |
H34C | 0.6846 | 0.8835 | 0.5333 | 0.097* | |
O8 | 0.38763 (16) | 0.1963 (2) | 0.55652 (6) | 0.0416 (5) | |
H8 | 0.4016 | 0.2506 | 0.5379 | 0.062* | |
C35 | 0.5070 (2) | 0.1671 (3) | 0.57816 (8) | 0.0371 (5) | |
H35A | 0.5336 | 0.2342 | 0.5970 | 0.056* | |
H35B | 0.5757 | 0.1518 | 0.5562 | 0.056* | |
H35C | 0.4941 | 0.0950 | 0.5962 | 0.056* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0232 (7) | 0.0269 (7) | 0.0203 (6) | 0.0070 (6) | 0.0020 (5) | 0.0015 (5) |
O2 | 0.0276 (8) | 0.0276 (7) | 0.0384 (8) | 0.0093 (7) | 0.0014 (7) | 0.0064 (7) |
O3 | 0.0313 (9) | 0.0535 (12) | 0.0399 (9) | 0.0083 (9) | 0.0150 (8) | 0.0041 (9) |
O4 | 0.0220 (7) | 0.0355 (8) | 0.0259 (7) | −0.0126 (7) | 0.0030 (6) | −0.0124 (6) |
O5 | 0.0256 (7) | 0.0384 (9) | 0.0356 (8) | 0.0058 (7) | 0.0138 (7) | 0.0080 (7) |
O6 | 0.0758 (15) | 0.0490 (11) | 0.0345 (9) | −0.0191 (12) | 0.0162 (10) | 0.0097 (8) |
O7 | 0.0582 (13) | 0.0365 (9) | 0.0427 (10) | −0.0103 (9) | 0.0196 (9) | −0.0067 (8) |
N1 | 0.0239 (8) | 0.0255 (8) | 0.0305 (9) | 0.0041 (7) | 0.0031 (7) | −0.0032 (7) |
N2 | 0.0236 (8) | 0.0304 (9) | 0.0238 (8) | 0.0012 (7) | 0.0078 (7) | 0.0030 (7) |
C1 | 0.0158 (7) | 0.0190 (8) | 0.0166 (7) | −0.0007 (7) | −0.0027 (6) | 0.0005 (6) |
C2 | 0.0171 (8) | 0.0192 (8) | 0.0181 (7) | −0.0003 (7) | −0.0011 (6) | −0.0013 (6) |
C3 | 0.0190 (8) | 0.0178 (7) | 0.0169 (7) | 0.0040 (7) | −0.0012 (7) | −0.0005 (6) |
C4 | 0.0205 (8) | 0.0216 (8) | 0.0156 (7) | 0.0025 (7) | −0.0044 (7) | −0.0018 (6) |
C5 | 0.0180 (8) | 0.0153 (7) | 0.0153 (7) | 0.0008 (6) | −0.0040 (6) | −0.0027 (6) |
C6 | 0.0185 (8) | 0.0246 (9) | 0.0192 (8) | 0.0032 (7) | −0.0056 (7) | −0.0002 (7) |
C7 | 0.0174 (8) | 0.0230 (9) | 0.0226 (8) | −0.0012 (7) | −0.0072 (7) | −0.0036 (7) |
C8 | 0.0131 (7) | 0.0136 (7) | 0.0188 (7) | 0.0003 (6) | −0.0042 (6) | −0.0010 (6) |
C9 | 0.0135 (7) | 0.0136 (7) | 0.0164 (7) | −0.0016 (6) | −0.0027 (6) | −0.0010 (6) |
C10 | 0.0163 (7) | 0.0121 (7) | 0.0153 (7) | −0.0001 (6) | −0.0026 (6) | −0.0003 (6) |
C11 | 0.0161 (8) | 0.0189 (8) | 0.0192 (8) | −0.0019 (7) | −0.0014 (6) | −0.0027 (6) |
C12 | 0.0161 (8) | 0.0187 (8) | 0.0184 (7) | −0.0010 (7) | −0.0017 (6) | −0.0007 (6) |
C13 | 0.0132 (7) | 0.0136 (7) | 0.0213 (8) | 0.0013 (6) | −0.0020 (6) | 0.0025 (6) |
C14 | 0.0132 (7) | 0.0123 (7) | 0.0221 (8) | −0.0003 (6) | −0.0034 (6) | 0.0003 (6) |
C15 | 0.0138 (8) | 0.0183 (8) | 0.0270 (9) | −0.0022 (7) | −0.0068 (7) | −0.0003 (7) |
C16 | 0.0136 (8) | 0.0190 (8) | 0.0324 (10) | −0.0016 (7) | −0.0039 (7) | 0.0018 (7) |
C17 | 0.0128 (7) | 0.0185 (8) | 0.0286 (9) | −0.0001 (6) | −0.0002 (7) | 0.0041 (7) |
C18 | 0.0127 (7) | 0.0181 (8) | 0.0224 (8) | 0.0001 (6) | −0.0007 (6) | 0.0029 (7) |
C19 | 0.0171 (8) | 0.0215 (8) | 0.0251 (9) | 0.0029 (7) | 0.0010 (7) | 0.0056 (7) |
C20 | 0.0204 (9) | 0.0222 (9) | 0.0300 (10) | 0.0016 (8) | 0.0051 (8) | 0.0098 (8) |
C21 | 0.0189 (9) | 0.0272 (10) | 0.0374 (11) | −0.0037 (8) | 0.0045 (8) | 0.0112 (9) |
C22 | 0.0146 (8) | 0.0294 (10) | 0.0346 (10) | 0.0004 (8) | 0.0036 (8) | 0.0086 (9) |
C23 | 0.0278 (10) | 0.0332 (11) | 0.0209 (8) | 0.0019 (9) | −0.0054 (8) | −0.0098 (8) |
C24 | 0.0278 (10) | 0.0320 (10) | 0.0208 (9) | 0.0063 (9) | −0.0019 (8) | 0.0072 (8) |
C25 | 0.0241 (9) | 0.0130 (7) | 0.0260 (9) | −0.0010 (7) | 0.0022 (7) | −0.0001 (7) |
C26 | 0.0195 (8) | 0.0165 (8) | 0.0268 (9) | 0.0050 (7) | −0.0015 (7) | 0.0041 (7) |
C27 | 0.0185 (8) | 0.0131 (7) | 0.0306 (9) | 0.0001 (7) | −0.0015 (7) | 0.0015 (7) |
C28 | 0.0178 (8) | 0.0200 (8) | 0.0323 (10) | 0.0023 (7) | −0.0011 (8) | 0.0037 (7) |
C29 | 0.0208 (9) | 0.0240 (9) | 0.0273 (9) | 0.0051 (8) | 0.0054 (8) | 0.0114 (8) |
C30 | 0.0324 (11) | 0.0251 (10) | 0.0362 (11) | 0.0044 (9) | 0.0045 (10) | 0.0124 (9) |
C31 | 0.0334 (11) | 0.0295 (10) | 0.0233 (9) | 0.0013 (9) | 0.0068 (9) | 0.0064 (8) |
C32 | 0.0373 (12) | 0.0313 (11) | 0.0343 (11) | −0.0010 (10) | 0.0121 (10) | 0.0040 (9) |
C33 | 0.0566 (19) | 0.0508 (17) | 0.0546 (17) | −0.0206 (16) | 0.0115 (15) | −0.0036 (14) |
C34 | 0.079 (2) | 0.0497 (18) | 0.064 (2) | −0.0230 (19) | −0.014 (2) | 0.0164 (16) |
O8 | 0.0170 (7) | 0.0702 (14) | 0.0375 (9) | −0.0064 (8) | −0.0026 (7) | 0.0239 (9) |
C35 | 0.0225 (10) | 0.0544 (15) | 0.0344 (11) | −0.0013 (11) | −0.0057 (9) | 0.0076 (11) |
O1—N1 | 1.395 (2) | C16—H16B | 0.9900 |
O1—C3 | 1.472 (2) | C17—C28 | 1.534 (3) |
O2—N1 | 1.207 (2) | C17—C22 | 1.543 (3) |
O3—N1 | 1.205 (3) | C17—C18 | 1.547 (3) |
O4—C11 | 1.224 (2) | C18—C19 | 1.549 (3) |
O5—C29 | 1.243 (3) | C18—H18 | 1.0000 |
O6—C32 | 1.196 (3) | C19—C20 | 1.536 (3) |
O7—C32 | 1.343 (3) | C19—H19A | 0.9900 |
O7—C33 | 1.469 (4) | C19—H19B | 0.9900 |
N2—C29 | 1.338 (3) | C20—C29 | 1.531 (3) |
N2—C31 | 1.440 (3) | C20—C21 | 1.537 (3) |
N2—H2N | 0.8800 | C20—C30 | 1.543 (3) |
C1—C2 | 1.528 (3) | C21—C22 | 1.531 (3) |
C1—C10 | 1.545 (3) | C21—H21A | 0.9900 |
C1—H1A | 0.9900 | C21—H21B | 0.9900 |
C1—H1B | 0.9900 | C22—H22A | 0.9900 |
C2—C3 | 1.514 (3) | C22—H22B | 0.9900 |
C2—H2A | 0.9900 | C23—H23A | 0.9800 |
C2—H2B | 0.9900 | C23—H23B | 0.9800 |
C3—C4 | 1.542 (3) | C23—H23C | 0.9800 |
C3—H3 | 1.0000 | C24—H24A | 0.9800 |
C4—C24 | 1.536 (3) | C24—H24B | 0.9800 |
C4—C23 | 1.544 (3) | C24—H24C | 0.9800 |
C4—C5 | 1.563 (3) | C25—H25A | 0.9800 |
C5—C6 | 1.532 (3) | C25—H25B | 0.9800 |
C5—C10 | 1.559 (2) | C25—H25C | 0.9800 |
C5—H5 | 1.0000 | C26—H26A | 0.9800 |
C6—C7 | 1.530 (3) | C26—H26B | 0.9800 |
C6—H6A | 0.9900 | C26—H26C | 0.9800 |
C6—H6B | 0.9900 | C27—H27A | 0.9800 |
C7—C8 | 1.541 (2) | C27—H27B | 0.9800 |
C7—H7A | 0.9900 | C27—H27C | 0.9800 |
C7—H7B | 0.9900 | C28—H28A | 0.9800 |
C8—C26 | 1.541 (3) | C28—H28B | 0.9800 |
C8—C9 | 1.566 (2) | C28—H28C | 0.9800 |
C8—C14 | 1.588 (3) | C30—H30A | 0.9800 |
C9—C11 | 1.528 (2) | C30—H30B | 0.9800 |
C9—C10 | 1.569 (2) | C30—H30C | 0.9800 |
C9—H9 | 1.0000 | C31—C32 | 1.513 (3) |
C10—C25 | 1.544 (2) | C31—H31A | 0.9900 |
C11—C12 | 1.470 (3) | C31—H31B | 0.9900 |
C12—C13 | 1.343 (2) | C33—C34 | 1.486 (6) |
C12—H12 | 0.9500 | C33—H33A | 0.9900 |
C13—C18 | 1.519 (3) | C33—H33B | 0.9900 |
C13—C14 | 1.527 (3) | C34—H34A | 0.9800 |
C14—C15 | 1.554 (3) | C34—H34B | 0.9800 |
C14—C27 | 1.556 (2) | C34—H34C | 0.9800 |
C15—C16 | 1.528 (3) | O8—C35 | 1.417 (3) |
C15—H15A | 0.9900 | O8—H8 | 0.8400 |
C15—H15B | 0.9900 | C35—H35A | 0.9800 |
C16—C17 | 1.531 (3) | C35—H35B | 0.9800 |
C16—H16A | 0.9900 | C35—H35C | 0.9800 |
N1—O1—C3 | 114.75 (14) | C13—C18—C19 | 109.26 (15) |
C32—O7—C33 | 118.6 (2) | C17—C18—C19 | 112.42 (15) |
O3—N1—O2 | 128.6 (2) | C13—C18—H18 | 107.3 |
O3—N1—O1 | 112.79 (18) | C17—C18—H18 | 107.3 |
O2—N1—O1 | 118.61 (17) | C19—C18—H18 | 107.3 |
C29—N2—C31 | 121.79 (18) | C20—C19—C18 | 114.16 (16) |
C29—N2—H2N | 119.1 | C20—C19—H19A | 108.7 |
C31—N2—H2N | 119.1 | C18—C19—H19A | 108.7 |
C2—C1—C10 | 113.04 (14) | C20—C19—H19B | 108.7 |
C2—C1—H1A | 109.0 | C18—C19—H19B | 108.7 |
C10—C1—H1A | 109.0 | H19A—C19—H19B | 107.6 |
C2—C1—H1B | 109.0 | C29—C20—C19 | 114.11 (17) |
C10—C1—H1B | 109.0 | C29—C20—C21 | 109.22 (18) |
H1A—C1—H1B | 107.8 | C19—C20—C21 | 107.84 (17) |
C3—C2—C1 | 110.78 (15) | C29—C20—C30 | 106.28 (17) |
C3—C2—H2A | 109.5 | C19—C20—C30 | 109.05 (18) |
C1—C2—H2A | 109.5 | C21—C20—C30 | 110.33 (18) |
C3—C2—H2B | 109.5 | C22—C21—C20 | 111.27 (17) |
C1—C2—H2B | 109.5 | C22—C21—H21A | 109.4 |
H2A—C2—H2B | 108.1 | C20—C21—H21A | 109.4 |
O1—C3—C2 | 108.99 (15) | C22—C21—H21B | 109.4 |
O1—C3—C4 | 105.56 (14) | C20—C21—H21B | 109.4 |
C2—C3—C4 | 114.24 (15) | H21A—C21—H21B | 108.0 |
O1—C3—H3 | 109.3 | C21—C22—C17 | 115.40 (18) |
C2—C3—H3 | 109.3 | C21—C22—H22A | 108.4 |
C4—C3—H3 | 109.3 | C17—C22—H22A | 108.4 |
C24—C4—C3 | 111.32 (17) | C21—C22—H22B | 108.4 |
C24—C4—C23 | 108.59 (16) | C17—C22—H22B | 108.4 |
C3—C4—C23 | 106.91 (16) | H22A—C22—H22B | 107.5 |
C24—C4—C5 | 114.53 (16) | C4—C23—H23A | 109.5 |
C3—C4—C5 | 106.60 (14) | C4—C23—H23B | 109.5 |
C23—C4—C5 | 108.59 (16) | H23A—C23—H23B | 109.5 |
C6—C5—C10 | 110.96 (15) | C4—C23—H23C | 109.5 |
C6—C5—C4 | 113.04 (14) | H23A—C23—H23C | 109.5 |
C10—C5—C4 | 117.11 (15) | H23B—C23—H23C | 109.5 |
C6—C5—H5 | 104.8 | C4—C24—H24A | 109.5 |
C10—C5—H5 | 104.8 | C4—C24—H24B | 109.5 |
C4—C5—H5 | 104.8 | H24A—C24—H24B | 109.5 |
C7—C6—C5 | 109.99 (15) | C4—C24—H24C | 109.5 |
C7—C6—H6A | 109.7 | H24A—C24—H24C | 109.5 |
C5—C6—H6A | 109.7 | H24B—C24—H24C | 109.5 |
C7—C6—H6B | 109.7 | C10—C25—H25A | 109.5 |
C5—C6—H6B | 109.7 | C10—C25—H25B | 109.5 |
H6A—C6—H6B | 108.2 | H25A—C25—H25B | 109.5 |
C6—C7—C8 | 114.13 (16) | C10—C25—H25C | 109.5 |
C6—C7—H7A | 108.7 | H25A—C25—H25C | 109.5 |
C8—C7—H7A | 108.7 | H25B—C25—H25C | 109.5 |
C6—C7—H7B | 108.7 | C8—C26—H26A | 109.5 |
C8—C7—H7B | 108.7 | C8—C26—H26B | 109.5 |
H7A—C7—H7B | 107.6 | H26A—C26—H26B | 109.5 |
C26—C8—C7 | 107.86 (15) | C8—C26—H26C | 109.5 |
C26—C8—C9 | 109.78 (15) | H26A—C26—H26C | 109.5 |
C7—C8—C9 | 110.79 (15) | H26B—C26—H26C | 109.5 |
C26—C8—C14 | 110.28 (14) | C14—C27—H27A | 109.5 |
C7—C8—C14 | 110.18 (14) | C14—C27—H27B | 109.5 |
C9—C8—C14 | 107.95 (14) | H27A—C27—H27B | 109.5 |
C11—C9—C8 | 108.15 (14) | C14—C27—H27C | 109.5 |
C11—C9—C10 | 115.58 (14) | H27A—C27—H27C | 109.5 |
C8—C9—C10 | 117.53 (14) | H27B—C27—H27C | 109.5 |
C11—C9—H9 | 104.7 | C17—C28—H28A | 109.5 |
C8—C9—H9 | 104.7 | C17—C28—H28B | 109.5 |
C10—C9—H9 | 104.7 | H28A—C28—H28B | 109.5 |
C25—C10—C1 | 108.51 (15) | C17—C28—H28C | 109.5 |
C25—C10—C5 | 113.92 (14) | H28A—C28—H28C | 109.5 |
C1—C10—C5 | 107.61 (14) | H28B—C28—H28C | 109.5 |
C25—C10—C9 | 112.32 (15) | O5—C29—N2 | 121.4 (2) |
C1—C10—C9 | 108.08 (13) | O5—C29—C20 | 121.2 (2) |
C5—C10—C9 | 106.15 (14) | N2—C29—C20 | 117.40 (18) |
O4—C11—C12 | 119.42 (17) | C20—C30—H30A | 109.5 |
O4—C11—C9 | 123.50 (17) | C20—C30—H30B | 109.5 |
C12—C11—C9 | 117.08 (15) | H30A—C30—H30B | 109.5 |
C13—C12—C11 | 124.57 (17) | C20—C30—H30C | 109.5 |
C13—C12—H12 | 117.7 | H30A—C30—H30C | 109.5 |
C11—C12—H12 | 117.7 | H30B—C30—H30C | 109.5 |
C12—C13—C18 | 118.73 (16) | N2—C31—C32 | 112.32 (18) |
C12—C13—C14 | 120.39 (16) | N2—C31—H31A | 109.1 |
C18—C13—C14 | 120.69 (15) | C32—C31—H31A | 109.1 |
C13—C14—C15 | 111.65 (15) | N2—C31—H31B | 109.1 |
C13—C14—C27 | 106.56 (15) | C32—C31—H31B | 109.1 |
C15—C14—C27 | 107.25 (15) | H31A—C31—H31B | 107.9 |
C13—C14—C8 | 109.02 (14) | O6—C32—O7 | 125.7 (2) |
C15—C14—C8 | 110.50 (15) | O6—C32—C31 | 125.2 (2) |
C27—C14—C8 | 111.82 (15) | O7—C32—C31 | 109.10 (19) |
C16—C15—C14 | 114.29 (16) | O7—C33—C34 | 109.2 (3) |
C16—C15—H15A | 108.7 | O7—C33—H33A | 109.8 |
C14—C15—H15A | 108.7 | C34—C33—H33A | 109.8 |
C16—C15—H15B | 108.7 | O7—C33—H33B | 109.8 |
C14—C15—H15B | 108.7 | C34—C33—H33B | 109.8 |
H15A—C15—H15B | 107.6 | H33A—C33—H33B | 108.3 |
C15—C16—C17 | 112.65 (16) | C33—C34—H34A | 109.5 |
C15—C16—H16A | 109.1 | C33—C34—H34B | 109.5 |
C17—C16—H16A | 109.1 | H34A—C34—H34B | 109.5 |
C15—C16—H16B | 109.1 | C33—C34—H34C | 109.5 |
C17—C16—H16B | 109.1 | H34A—C34—H34C | 109.5 |
H16A—C16—H16B | 107.8 | H34B—C34—H34C | 109.5 |
C16—C17—C28 | 110.23 (16) | C35—O8—H8 | 109.5 |
C16—C17—C22 | 111.17 (16) | O8—C35—H35A | 109.5 |
C28—C17—C22 | 107.16 (17) | O8—C35—H35B | 109.5 |
C16—C17—C18 | 108.77 (16) | H35A—C35—H35B | 109.5 |
C28—C17—C18 | 110.14 (16) | O8—C35—H35C | 109.5 |
C22—C17—C18 | 109.36 (16) | H35A—C35—H35C | 109.5 |
C13—C18—C17 | 113.05 (15) | H35B—C35—H35C | 109.5 |
C3—O1—N1—O3 | −171.98 (18) | C12—C13—C14—C27 | 91.53 (19) |
C3—O1—N1—O2 | 7.6 (3) | C18—C13—C14—C27 | −83.32 (19) |
C10—C1—C2—C3 | −57.2 (2) | C12—C13—C14—C8 | −29.3 (2) |
N1—O1—C3—C2 | 77.22 (19) | C18—C13—C14—C8 | 155.85 (15) |
N1—O1—C3—C4 | −159.65 (15) | C26—C8—C14—C13 | −61.40 (18) |
C1—C2—C3—O1 | 175.89 (14) | C7—C8—C14—C13 | 179.64 (15) |
C1—C2—C3—C4 | 58.1 (2) | C9—C8—C14—C13 | 58.54 (18) |
O1—C3—C4—C24 | −47.73 (19) | C26—C8—C14—C15 | 61.66 (19) |
C2—C3—C4—C24 | 72.0 (2) | C7—C8—C14—C15 | −57.31 (19) |
O1—C3—C4—C23 | 70.72 (19) | C9—C8—C14—C15 | −178.41 (15) |
C2—C3—C4—C23 | −169.56 (16) | C26—C8—C14—C27 | −178.96 (15) |
O1—C3—C4—C5 | −173.29 (14) | C7—C8—C14—C27 | 62.08 (18) |
C2—C3—C4—C5 | −53.6 (2) | C9—C8—C14—C27 | −59.02 (18) |
C24—C4—C5—C6 | 59.7 (2) | C13—C14—C15—C16 | −39.6 (2) |
C3—C4—C5—C6 | −176.67 (16) | C27—C14—C15—C16 | 76.7 (2) |
C23—C4—C5—C6 | −61.8 (2) | C8—C14—C15—C16 | −161.15 (15) |
C24—C4—C5—C10 | −71.1 (2) | C14—C15—C16—C17 | 55.7 (2) |
C3—C4—C5—C10 | 52.5 (2) | C15—C16—C17—C28 | 60.9 (2) |
C23—C4—C5—C10 | 167.32 (16) | C15—C16—C17—C22 | 179.60 (16) |
C10—C5—C6—C7 | −64.4 (2) | C15—C16—C17—C18 | −59.9 (2) |
C4—C5—C6—C7 | 161.69 (16) | C12—C13—C18—C17 | 144.52 (17) |
C5—C6—C7—C8 | 56.1 (2) | C14—C13—C18—C17 | −40.5 (2) |
C6—C7—C8—C26 | 75.1 (2) | C12—C13—C18—C19 | −89.5 (2) |
C6—C7—C8—C9 | −45.1 (2) | C14—C13—C18—C19 | 85.45 (19) |
C6—C7—C8—C14 | −164.45 (15) | C16—C17—C18—C13 | 51.0 (2) |
C26—C8—C9—C11 | 58.58 (18) | C28—C17—C18—C13 | −69.9 (2) |
C7—C8—C9—C11 | 177.61 (14) | C22—C17—C18—C13 | 172.58 (16) |
C14—C8—C9—C11 | −61.66 (18) | C16—C17—C18—C19 | −73.29 (19) |
C26—C8—C9—C10 | −74.52 (19) | C28—C17—C18—C19 | 165.80 (16) |
C7—C8—C9—C10 | 44.5 (2) | C22—C17—C18—C19 | 48.3 (2) |
C14—C8—C9—C10 | 165.23 (14) | C13—C18—C19—C20 | 179.00 (16) |
C2—C1—C10—C25 | −70.77 (19) | C17—C18—C19—C20 | −54.6 (2) |
C2—C1—C10—C5 | 52.94 (19) | C18—C19—C20—C29 | −64.7 (2) |
C2—C1—C10—C9 | 167.18 (14) | C18—C19—C20—C21 | 56.9 (2) |
C6—C5—C10—C25 | −64.3 (2) | C18—C19—C20—C30 | 176.67 (18) |
C4—C5—C10—C25 | 67.5 (2) | C29—C20—C21—C22 | 68.4 (2) |
C6—C5—C10—C1 | 175.38 (15) | C19—C20—C21—C22 | −56.1 (2) |
C4—C5—C10—C1 | −52.79 (19) | C30—C20—C21—C22 | −175.09 (19) |
C6—C5—C10—C9 | 59.85 (18) | C20—C21—C22—C17 | 56.4 (3) |
C4—C5—C10—C9 | −168.32 (15) | C16—C17—C22—C21 | 69.3 (2) |
C11—C9—C10—C25 | −55.9 (2) | C28—C17—C22—C21 | −170.23 (18) |
C8—C9—C10—C25 | 73.8 (2) | C18—C17—C22—C21 | −50.9 (2) |
C11—C9—C10—C1 | 63.80 (19) | C31—N2—C29—O5 | 0.0 (3) |
C8—C9—C10—C1 | −166.48 (15) | C31—N2—C29—C20 | −177.81 (18) |
C11—C9—C10—C5 | 179.00 (15) | C19—C20—C29—O5 | 154.10 (19) |
C8—C9—C10—C5 | −51.27 (19) | C21—C20—C29—O5 | 33.3 (2) |
C8—C9—C11—O4 | −144.77 (19) | C30—C20—C29—O5 | −85.7 (2) |
C10—C9—C11—O4 | −10.6 (3) | C19—C20—C29—N2 | −28.1 (3) |
C8—C9—C11—C12 | 35.9 (2) | C21—C20—C29—N2 | −148.88 (18) |
C10—C9—C11—C12 | 170.02 (16) | C30—C20—C29—N2 | 92.1 (2) |
O4—C11—C12—C13 | 174.69 (19) | C29—N2—C31—C32 | −134.1 (2) |
C9—C11—C12—C13 | −5.9 (3) | C33—O7—C32—O6 | 2.8 (4) |
C11—C12—C13—C18 | 177.53 (17) | C33—O7—C32—C31 | −178.3 (3) |
C11—C12—C13—C14 | 2.6 (3) | N2—C31—C32—O6 | 4.9 (4) |
C12—C13—C14—C15 | −151.67 (17) | N2—C31—C32—O7 | −174.1 (2) |
C18—C13—C14—C15 | 33.5 (2) | C32—O7—C33—C34 | 87.1 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···O8i | 0.88 | 2.04 | 2.806 (3) | 144 |
O8—H8···O5 | 0.84 | 1.89 | 2.728 (2) | 177 |
C1—H1A···O4 | 0.99 | 2.34 | 2.968 (2) | 120 |
C19—H19B···O8i | 0.99 | 2.40 | 3.359 (3) | 163 |
C25—H25A···O4 | 0.98 | 2.41 | 3.058 (3) | 123 |
C34—H34B···O5ii | 0.98 | 2.58 | 3.515 (4) | 160 |
Symmetry codes: (i) x+1/2, −y+1/2, −z+1; (ii) x+1/2, −y+3/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C34H52N2O7·CH4O |
Mr | 632.82 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 100 |
a, b, c (Å) | 10.1598 (8), 11.1275 (9), 30.387 (2) |
V (Å3) | 3435.3 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.55 × 0.53 × 0.15 |
Data collection | |
Diffractometer | Bruker Kappa APEXII CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2008) |
Tmin, Tmax | 0.88, 1.00 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 49017, 5565, 5044 |
Rint | 0.036 |
(sin θ/λ)max (Å−1) | 0.703 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.122, 1.10 |
No. of reflections | 5565 |
No. of parameters | 416 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.68, −0.38 |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SAINT, SADABS and XPREP (Bruker, 2008), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), Mercury (Macrae et al., 2006), PLATON (Spek, 2009) and publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···O8i | 0.88 | 2.04 | 2.806 (3) | 144.3 |
O8—H8···O5 | 0.84 | 1.89 | 2.728 (2) | 176.9 |
C1—H1A···O4 | 0.99 | 2.34 | 2.968 (2) | 120.1 |
C19—H19B···O8i | 0.99 | 2.40 | 3.359 (3) | 162.7 |
C25—H25A···O4 | 0.98 | 2.41 | 3.058 (3) | 123.0 |
C34—H34B···O5ii | 0.98 | 2.58 | 3.515 (4) | 160.4 |
Symmetry codes: (i) x+1/2, −y+1/2, −z+1; (ii) x+1/2, −y+3/2, −z+1. |
Acknowledgements
The work was supported by the ZIT Zentrum für Innovation und Technologie GmbH (Vienna Spot of Excellence, 182081).
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The title compound, (I), was synthesized within a research program (Beseda et al., 2010; Amer et al., 2010) designed to create new therapeutically useful derivatives of 18β-glycyrrhetinic acid (GA), an agent for the treatment of metabolic deseases (Baran et al., 1974; Asl & Hosseinzadeh, 2008). For new therapeutic applications, GA is typically modified on ring A (C1 - C5 and C10), on ring C (C8 - C15), and/or on the terminal carboxyl group of C29 (Su et al., 2004; Beseda et al., 2010; Czollner et al., 2011). In the title compound these modifications comprised the introduction of an O-ethylglycine group N-bonded to the COOH group of GA, and, as an uncommon feature, a nitrate ester group replacing the 3-hydroxy group of GA. The compound was then crystallized from methanol to give the stoichiometric crystalline methanol solvate (I). A view of the asymmetric unit is shown in Fig. 1. The GA fragment (C1 through C30, O1, O4, O5) features usual bond lengths, bond angles, and conformation (Campsteyn et al., 1977; Alvarez-Larena et al., 2007; Beseda et al., 2010; Czollner et al., 2011). There are four six-membered saturated carbocycles (A, B, D, and E) in chair and the unsaturated ring C in half-chair conformation (Fig. 2). The carboxamide group O5═C29—N2 is endo-oriented with respect to the amide nitrogen N2 (C19—C20—C29—N2 = -28.1 (3)°), in contrast to a propargyl amide derivative of GA, where it is exo-oriented (Czollner et al., 2011; corresponding torsion angle 162.3°). In the crystal lattice of (I) the non-solvent molecules are arranged in undulating layers parallel to (010) and adopt a typical herring-bone pattern within these layers (Fig. 3). These layers repeat by 21 axes parallel to [010]. The oxygen and nitrogen bearing ends of the GA molecules and the methanol solvent molecules are accumulated in reagions near z ≈ 0, 1/2, and 1, and are crosslinked by O—H···O, N—H···O and C—H···O interactions (Table 1). The most prominent of them are the hydrogen bonds O8—H8···O5 and N2—H2n···O8i, which are donated and accepted by the methanol molecule. The methanol molecule and the carboxamide moiety O5═C29—N2 thereby build up an infinite zigzag hydrogen bond chain parallel to [100], as shown in Fig. 3. The nitrato group (N1, O1, O2, O3) is stereochemically inactive by showing no C,N,O—H···O interactions within the usual geometrical limits (Table 1; cut-off values are H···O ≤ 2.60 Å, X—H···O ≥ 120°).