metal-organic compounds
Bis{4-phenyl-1-[1-(pyridin-2-yl-κN)ethylidene]thiosemicarbazidato-κ2N1,S}cadmium
aEscola de Química e Alimentos, Universidade Federal do Rio Grande, Av. Itália km 08, Campus Carreiros, 96203-900 Rio Grande-RS, Brazil, bDepartamento de Química, Universidade Federal de Santa Maria, Av. Roraima, Campus, 97105-900 Santa Maria-RS, Brazil, and cDepartamento de Química, Universidade Federal de Sergipe, Av. Marechal Rondon s/n, Campus, 49100-000 São Cristóvão-SE, Brazil
*Correspondence e-mail: adriano@daad-alumni.de
The reaction of cadmium acetate dihydrate with 2-acetylpyridine (4-phenylthiosemicarbazone) yielded the title compound, [Cd(C14H13N4S)2]. The CdII atom is six-coordinated in a distorted octahedral environment by two deprotonated thiosemicarbazone ligands acting in a tridentate chelating mode through two N and one S atoms, forming metalla-rings. In the crystal, molecules are connected through inversion centers via pairs of N—H⋯S interactions, building a one-dimensional hydrogen-bonded polymer along [0-1-1].
Related literature
For the synthesis of 2-acetylpyridine-(4-phenylthiosemicarbazone), see: Offiong & Martelli (1997). For thiosemicarbazone complexes with similar coordination environments, see: Ali et al. (2002); Kovala-Demertzi et al. (2005). For the antibacterial and antifungal activity of CdII thiosemicarbazone complexes, see: Alomar et al. (2010). For the bioinorganic chemistry of the CdII ion and its relation to biologically important ions, namely ZnII and CaII, see: Kaim & Schwederski (1995).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536812016558/bt5877sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812016558/bt5877Isup2.hkl
Starting materials were commercially available and were used without further purification. The synthesis of 2-acetylpyridine-(4-phenylthiosemicarbazone) was adapted from a procedure reported previously (Offiong & Martelli, 1997). 2-Acetylpyridine-(4-phenylthiosemicarbazone) (2 mmol) was dissolved in ethanol and treated with one KOH pellet. Stirring was maintained for 30 min, while the reaction mixture turns yellow. A solution of cadmium acetate dihydrate (1 mmol) also in ethanol was added under continuous stirring and under slight warming to 60 °C. After 3 h a yellow solid was formed. This solid was filtered-off, washed with small portions of cool ethanol and dried at room conditions. Yellow crystals of the complex, suitable for X-ray analysis, were obtained by recrystallization from a 2:1 mixture of acetone and dimethylformamide.
H atoms attached to C atoms were positioned with idealized geometry and were refined isotropic with Ueq(H) set to 1.2 times of the Ueq(C) for the aromatic and 1.5 times of the Ueq(C) for methyl H atoms using a riding model with C—H = 0.93 Å and C—H = 0.96 Å, respectively. H atoms attached to N atoms were located in difference Fourier maps. Their positional and isotropic displacement parameters were refined.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).[Cd(C14H13N4S)2] | Z = 2 |
Mr = 651.09 | F(000) = 660 |
Triclinic, P1 | Dx = 1.543 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.8452 (2) Å | Cell parameters from 5467 reflections |
b = 13.0116 (3) Å | θ = 2.3–23.9° |
c = 13.1736 (5) Å | µ = 0.96 mm−1 |
α = 116.495 (1)° | T = 296 K |
β = 105.757 (1)° | Block, yellow |
γ = 96.122 (1)° | 0.22 × 0.14 × 0.11 mm |
V = 1401.81 (7) Å3 |
Bruker APEXII CCD diffractometer | 8199 independent reflections |
Radiation source: fine-focus sealed tube | 5975 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.044 |
ϕ and ω scans | θmax = 30.1°, θmin = 2.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −13→13 |
Tmin = 0.816, Tmax = 0.902 | k = −18→17 |
29421 measured reflections | l = −16→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.038 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.080 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0314P)2 + 0.0548P] where P = (Fo2 + 2Fc2)/3 |
8199 reflections | (Δ/σ)max = 0.001 |
362 parameters | Δρmax = 0.75 e Å−3 |
0 restraints | Δρmin = −0.49 e Å−3 |
[Cd(C14H13N4S)2] | γ = 96.122 (1)° |
Mr = 651.09 | V = 1401.81 (7) Å3 |
Triclinic, P1 | Z = 2 |
a = 9.8452 (2) Å | Mo Kα radiation |
b = 13.0116 (3) Å | µ = 0.96 mm−1 |
c = 13.1736 (5) Å | T = 296 K |
α = 116.495 (1)° | 0.22 × 0.14 × 0.11 mm |
β = 105.757 (1)° |
Bruker APEXII CCD diffractometer | 8199 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 5975 reflections with I > 2σ(I) |
Tmin = 0.816, Tmax = 0.902 | Rint = 0.044 |
29421 measured reflections |
R[F2 > 2σ(F2)] = 0.038 | 0 restraints |
wR(F2) = 0.080 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | Δρmax = 0.75 e Å−3 |
8199 reflections | Δρmin = −0.49 e Å−3 |
362 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cd1 | 0.226151 (19) | 0.208486 (15) | 0.431225 (15) | 0.03261 (6) | |
S1 | 0.04751 (7) | 0.34127 (6) | 0.45863 (5) | 0.03845 (15) | |
S2 | 0.11139 (7) | 0.07311 (6) | 0.19832 (6) | 0.04311 (16) | |
C1 | 0.2081 (3) | 0.0380 (2) | 0.5482 (2) | 0.0349 (5) | |
C5 | 0.3030 (3) | −0.0431 (2) | 0.3973 (3) | 0.0542 (7) | |
H4 | 0.3389 | −0.0363 | 0.3415 | 0.065* | |
C2 | 0.1985 (3) | −0.0638 (2) | 0.5583 (3) | 0.0468 (7) | |
H1 | 0.1624 | −0.0695 | 0.6145 | 0.056* | |
C3 | 0.2432 (4) | −0.1567 (3) | 0.4838 (3) | 0.0582 (8) | |
H2 | 0.2360 | −0.2261 | 0.4886 | 0.070* | |
C4 | 0.2977 (4) | −0.1462 (3) | 0.4035 (3) | 0.0622 (9) | |
H3 | 0.3306 | −0.2071 | 0.3541 | 0.075* | |
C8 | 0.0828 (3) | 0.3844 (2) | 0.6114 (2) | 0.0319 (5) | |
C6 | 0.1612 (3) | 0.1410 (2) | 0.6249 (2) | 0.0334 (5) | |
C9 | 0.0826 (3) | 0.5625 (2) | 0.8007 (2) | 0.0356 (5) | |
C10 | 0.0613 (3) | 0.6755 (2) | 0.8373 (2) | 0.0436 (6) | |
H9 | 0.0400 | 0.7026 | 0.7818 | 0.052* | |
C14 | 0.1168 (4) | 0.5245 (3) | 0.8844 (2) | 0.0536 (8) | |
H13 | 0.1325 | 0.4495 | 0.8618 | 0.064* | |
C7 | 0.1277 (4) | 0.1484 (3) | 0.7318 (3) | 0.0550 (8) | |
H5 | 0.2132 | 0.1489 | 0.7887 | 0.083* | |
H6 | 0.0495 | 0.0807 | 0.7050 | 0.083* | |
H7 | 0.0989 | 0.2201 | 0.7704 | 0.083* | |
C12 | 0.1050 (3) | 0.7096 (3) | 1.0382 (2) | 0.0526 (7) | |
H11 | 0.1124 | 0.7584 | 1.1179 | 0.063* | |
C11 | 0.0713 (3) | 0.7478 (2) | 0.9550 (2) | 0.0521 (7) | |
H10 | 0.0551 | 0.8229 | 0.9782 | 0.063* | |
C13 | 0.1275 (4) | 0.5989 (3) | 1.0025 (3) | 0.0610 (8) | |
H12 | 0.1505 | 0.5730 | 1.0589 | 0.073* | |
N2 | 0.1521 (2) | 0.22010 (16) | 0.59191 (17) | 0.0324 (4) | |
N4 | 0.0634 (3) | 0.49398 (19) | 0.67666 (19) | 0.0402 (5) | |
N3 | 0.1191 (2) | 0.32216 (17) | 0.66504 (17) | 0.0348 (4) | |
N1 | 0.2593 (2) | 0.04738 (17) | 0.46709 (19) | 0.0399 (5) | |
C22 | 0.2505 (3) | 0.1299 (2) | 0.1648 (2) | 0.0337 (5) | |
C20 | 0.5236 (3) | 0.3367 (2) | 0.4314 (2) | 0.0334 (5) | |
C15 | 0.5532 (3) | 0.3897 (2) | 0.5636 (2) | 0.0340 (5) | |
C23 | 0.3274 (3) | 0.0925 (2) | −0.0112 (2) | 0.0405 (6) | |
C24 | 0.3295 (3) | −0.0091 (3) | −0.1097 (2) | 0.0503 (7) | |
H22 | 0.2653 | −0.0818 | −0.1376 | 0.060* | |
C16 | 0.6781 (3) | 0.4789 (2) | 0.6492 (2) | 0.0489 (7) | |
H14 | 0.7463 | 0.5080 | 0.6250 | 0.059* | |
C28 | 0.4211 (3) | 0.1993 (3) | 0.0278 (3) | 0.0581 (8) | |
H26 | 0.4193 | 0.2683 | 0.0927 | 0.070* | |
C19 | 0.4774 (3) | 0.3928 (2) | 0.7153 (2) | 0.0489 (7) | |
H17 | 0.4083 | 0.3634 | 0.7385 | 0.059* | |
C18 | 0.5999 (3) | 0.4811 (3) | 0.8043 (3) | 0.0600 (8) | |
H16 | 0.6133 | 0.5106 | 0.8860 | 0.072* | |
C17 | 0.7008 (3) | 0.5246 (3) | 0.7713 (3) | 0.0642 (9) | |
H15 | 0.7845 | 0.5845 | 0.8300 | 0.077* | |
C25 | 0.4256 (4) | −0.0030 (4) | −0.1660 (3) | 0.0688 (10) | |
H23 | 0.4262 | −0.0715 | −0.2320 | 0.083* | |
C27 | 0.5184 (4) | 0.2041 (4) | −0.0295 (3) | 0.0795 (11) | |
H25 | 0.5827 | 0.2764 | −0.0026 | 0.095* | |
C26 | 0.5200 (4) | 0.1022 (4) | −0.1263 (3) | 0.0835 (12) | |
H24 | 0.5858 | 0.1054 | −0.1644 | 0.100* | |
N6 | 0.3994 (2) | 0.25909 (17) | 0.35954 (17) | 0.0327 (4) | |
N5 | 0.4528 (2) | 0.34715 (18) | 0.59691 (18) | 0.0389 (5) | |
N7 | 0.3738 (2) | 0.21135 (18) | 0.23768 (18) | 0.0374 (5) | |
N8 | 0.2265 (3) | 0.0800 (2) | 0.0431 (2) | 0.0429 (5) | |
C21 | 0.6341 (3) | 0.3730 (2) | 0.3876 (3) | 0.0480 (7) | |
H18 | 0.6029 | 0.3237 | 0.3010 | 0.072* | |
H19 | 0.7266 | 0.3639 | 0.4253 | 0.072* | |
H20 | 0.6440 | 0.4548 | 0.4081 | 0.072* | |
H8 | 0.041 (3) | 0.531 (2) | 0.639 (2) | 0.035 (7)* | |
H21 | 0.152 (3) | 0.024 (2) | −0.002 (2) | 0.042 (8)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cd1 | 0.03545 (10) | 0.03298 (10) | 0.03154 (10) | 0.00908 (7) | 0.01550 (7) | 0.01576 (8) |
S1 | 0.0509 (4) | 0.0407 (3) | 0.0317 (3) | 0.0229 (3) | 0.0181 (3) | 0.0201 (3) |
S2 | 0.0417 (4) | 0.0439 (4) | 0.0312 (3) | −0.0027 (3) | 0.0145 (3) | 0.0108 (3) |
C1 | 0.0361 (13) | 0.0341 (13) | 0.0347 (13) | 0.0098 (10) | 0.0081 (11) | 0.0196 (11) |
C5 | 0.071 (2) | 0.0504 (17) | 0.0535 (18) | 0.0301 (15) | 0.0326 (16) | 0.0266 (15) |
C2 | 0.0517 (17) | 0.0423 (15) | 0.0526 (17) | 0.0155 (13) | 0.0159 (14) | 0.0295 (14) |
C3 | 0.070 (2) | 0.0413 (16) | 0.067 (2) | 0.0229 (15) | 0.0158 (17) | 0.0325 (16) |
C4 | 0.076 (2) | 0.0465 (17) | 0.065 (2) | 0.0355 (17) | 0.0270 (18) | 0.0236 (16) |
C8 | 0.0342 (13) | 0.0356 (12) | 0.0323 (12) | 0.0132 (10) | 0.0161 (10) | 0.0190 (11) |
C6 | 0.0325 (13) | 0.0377 (13) | 0.0355 (13) | 0.0118 (10) | 0.0128 (10) | 0.0217 (11) |
C9 | 0.0387 (14) | 0.0384 (13) | 0.0318 (13) | 0.0139 (11) | 0.0160 (11) | 0.0164 (11) |
C10 | 0.0548 (17) | 0.0375 (14) | 0.0387 (15) | 0.0139 (12) | 0.0167 (13) | 0.0188 (12) |
C14 | 0.083 (2) | 0.0494 (17) | 0.0436 (16) | 0.0323 (16) | 0.0317 (16) | 0.0268 (14) |
C7 | 0.077 (2) | 0.0605 (18) | 0.0552 (18) | 0.0314 (16) | 0.0366 (17) | 0.0407 (16) |
C12 | 0.0600 (19) | 0.0539 (18) | 0.0330 (15) | 0.0100 (15) | 0.0200 (14) | 0.0120 (14) |
C11 | 0.0620 (19) | 0.0373 (15) | 0.0437 (16) | 0.0114 (13) | 0.0199 (14) | 0.0092 (13) |
C13 | 0.089 (3) | 0.066 (2) | 0.0376 (16) | 0.0265 (18) | 0.0281 (16) | 0.0293 (16) |
N2 | 0.0367 (11) | 0.0310 (10) | 0.0342 (11) | 0.0130 (9) | 0.0156 (9) | 0.0176 (9) |
N4 | 0.0582 (15) | 0.0395 (12) | 0.0352 (12) | 0.0258 (11) | 0.0220 (11) | 0.0227 (11) |
N3 | 0.0424 (12) | 0.0341 (11) | 0.0337 (11) | 0.0164 (9) | 0.0181 (9) | 0.0177 (9) |
N1 | 0.0485 (13) | 0.0358 (11) | 0.0429 (12) | 0.0161 (10) | 0.0226 (10) | 0.0210 (10) |
C22 | 0.0372 (13) | 0.0355 (13) | 0.0295 (12) | 0.0119 (11) | 0.0142 (10) | 0.0151 (11) |
C20 | 0.0298 (12) | 0.0322 (12) | 0.0374 (13) | 0.0096 (10) | 0.0113 (10) | 0.0167 (11) |
C15 | 0.0286 (12) | 0.0319 (12) | 0.0383 (14) | 0.0100 (10) | 0.0085 (10) | 0.0164 (11) |
C23 | 0.0376 (14) | 0.0546 (16) | 0.0310 (13) | 0.0150 (12) | 0.0143 (11) | 0.0208 (12) |
C24 | 0.0570 (18) | 0.0598 (18) | 0.0364 (15) | 0.0242 (15) | 0.0189 (13) | 0.0225 (14) |
C16 | 0.0342 (14) | 0.0499 (16) | 0.0455 (16) | 0.0017 (12) | 0.0088 (12) | 0.0151 (14) |
C28 | 0.066 (2) | 0.0600 (19) | 0.0418 (16) | 0.0029 (16) | 0.0255 (15) | 0.0190 (15) |
C19 | 0.0475 (17) | 0.0543 (17) | 0.0359 (15) | 0.0064 (13) | 0.0106 (13) | 0.0193 (13) |
C18 | 0.0511 (18) | 0.070 (2) | 0.0342 (15) | 0.0070 (16) | 0.0053 (14) | 0.0136 (15) |
C17 | 0.0414 (17) | 0.068 (2) | 0.0418 (17) | −0.0061 (15) | −0.0007 (14) | 0.0074 (16) |
C25 | 0.062 (2) | 0.103 (3) | 0.0435 (18) | 0.043 (2) | 0.0279 (17) | 0.0286 (19) |
C27 | 0.067 (2) | 0.099 (3) | 0.058 (2) | −0.012 (2) | 0.0248 (18) | 0.034 (2) |
C26 | 0.062 (2) | 0.142 (4) | 0.050 (2) | 0.024 (3) | 0.0331 (19) | 0.043 (2) |
N6 | 0.0313 (11) | 0.0344 (10) | 0.0318 (11) | 0.0082 (9) | 0.0121 (9) | 0.0156 (9) |
N5 | 0.0353 (11) | 0.0407 (12) | 0.0343 (12) | 0.0056 (9) | 0.0088 (9) | 0.0164 (10) |
N7 | 0.0334 (11) | 0.0444 (12) | 0.0315 (11) | 0.0061 (9) | 0.0134 (9) | 0.0164 (10) |
N8 | 0.0394 (13) | 0.0470 (13) | 0.0313 (12) | 0.0009 (11) | 0.0133 (10) | 0.0124 (11) |
C21 | 0.0370 (15) | 0.0528 (17) | 0.0535 (17) | 0.0046 (12) | 0.0173 (13) | 0.0268 (14) |
Cd1—N6 | 2.3288 (19) | C11—H10 | 0.9300 |
Cd1—N2 | 2.3691 (18) | C13—H12 | 0.9300 |
Cd1—N1 | 2.381 (2) | N2—N3 | 1.385 (2) |
Cd1—N5 | 2.446 (2) | N4—H8 | 0.84 (2) |
Cd1—S1 | 2.5778 (6) | C22—N7 | 1.305 (3) |
Cd1—S2 | 2.5814 (7) | C22—N8 | 1.371 (3) |
S1—C8 | 1.748 (2) | C20—N6 | 1.291 (3) |
S2—C22 | 1.738 (2) | C20—C15 | 1.484 (3) |
C1—N1 | 1.344 (3) | C20—C21 | 1.489 (3) |
C1—C2 | 1.385 (3) | C15—N5 | 1.346 (3) |
C1—C6 | 1.487 (3) | C15—C16 | 1.380 (3) |
C5—N1 | 1.332 (3) | C23—C28 | 1.371 (4) |
C5—C4 | 1.376 (4) | C23—C24 | 1.386 (3) |
C5—H4 | 0.9300 | C23—N8 | 1.407 (3) |
C2—C3 | 1.381 (4) | C24—C25 | 1.367 (4) |
C2—H1 | 0.9300 | C24—H22 | 0.9300 |
C3—C4 | 1.360 (4) | C16—C17 | 1.383 (4) |
C3—H2 | 0.9300 | C16—H14 | 0.9300 |
C4—H3 | 0.9300 | C28—C27 | 1.383 (4) |
C8—N3 | 1.311 (3) | C28—H26 | 0.9300 |
C8—N4 | 1.365 (3) | C19—N5 | 1.335 (3) |
C6—N2 | 1.285 (3) | C19—C18 | 1.373 (4) |
C6—C7 | 1.498 (3) | C19—H17 | 0.9300 |
C9—C14 | 1.377 (4) | C18—C17 | 1.353 (4) |
C9—C10 | 1.387 (3) | C18—H16 | 0.9300 |
C9—N4 | 1.413 (3) | C17—H15 | 0.9300 |
C10—C11 | 1.376 (3) | C25—C26 | 1.355 (5) |
C10—H9 | 0.9300 | C25—H23 | 0.9300 |
C14—C13 | 1.383 (4) | C27—C26 | 1.375 (5) |
C14—H13 | 0.9300 | C27—H25 | 0.9300 |
C7—H5 | 0.9600 | C26—H24 | 0.9300 |
C7—H6 | 0.9600 | N6—N7 | 1.373 (3) |
C7—H7 | 0.9600 | N8—H21 | 0.83 (3) |
C12—C13 | 1.365 (4) | C21—H18 | 0.9600 |
C12—C11 | 1.373 (4) | C21—H19 | 0.9600 |
C12—H11 | 0.9300 | C21—H20 | 0.9600 |
N6—Cd1—N2 | 151.43 (7) | N3—N2—Cd1 | 120.07 (13) |
N6—Cd1—N1 | 111.91 (7) | C8—N4—C9 | 132.0 (2) |
N2—Cd1—N1 | 67.80 (6) | C8—N4—H8 | 116.0 (16) |
N6—Cd1—N5 | 68.06 (7) | C9—N4—H8 | 111.9 (16) |
N2—Cd1—N5 | 83.38 (7) | C8—N3—N2 | 112.35 (18) |
N1—Cd1—N5 | 94.00 (7) | C5—N1—C1 | 118.4 (2) |
N6—Cd1—S1 | 113.46 (5) | C5—N1—Cd1 | 122.97 (18) |
N2—Cd1—S1 | 71.90 (5) | C1—N1—Cd1 | 117.63 (15) |
N1—Cd1—S1 | 134.61 (5) | N7—C22—N8 | 115.7 (2) |
N5—Cd1—S1 | 101.36 (5) | N7—C22—S2 | 129.77 (18) |
N6—Cd1—S2 | 75.54 (5) | N8—C22—S2 | 114.48 (18) |
N2—Cd1—S2 | 132.65 (5) | N6—C20—C15 | 116.4 (2) |
N1—Cd1—S2 | 93.71 (5) | N6—C20—C21 | 123.3 (2) |
N5—Cd1—S2 | 143.06 (5) | C15—C20—C21 | 120.3 (2) |
S1—Cd1—S2 | 98.58 (2) | N5—C15—C16 | 121.1 (2) |
C8—S1—Cd1 | 95.23 (8) | N5—C15—C20 | 117.2 (2) |
C22—S2—Cd1 | 96.70 (8) | C16—C15—C20 | 121.7 (2) |
N1—C1—C2 | 121.2 (2) | C28—C23—C24 | 119.2 (3) |
N1—C1—C6 | 116.9 (2) | C28—C23—N8 | 123.3 (2) |
C2—C1—C6 | 121.9 (2) | C24—C23—N8 | 117.5 (2) |
N1—C5—C4 | 123.3 (3) | C25—C24—C23 | 120.3 (3) |
N1—C5—H4 | 118.3 | C25—C24—H22 | 119.9 |
C4—C5—H4 | 118.3 | C23—C24—H22 | 119.9 |
C3—C2—C1 | 119.0 (3) | C15—C16—C17 | 119.3 (3) |
C3—C2—H1 | 120.5 | C15—C16—H14 | 120.3 |
C1—C2—H1 | 120.5 | C17—C16—H14 | 120.3 |
C4—C3—C2 | 119.8 (3) | C23—C28—C27 | 119.9 (3) |
C4—C3—H2 | 120.1 | C23—C28—H26 | 120.1 |
C2—C3—H2 | 120.1 | C27—C28—H26 | 120.1 |
C3—C4—C5 | 118.2 (3) | N5—C19—C18 | 123.1 (3) |
C3—C4—H3 | 120.9 | N5—C19—H17 | 118.5 |
C5—C4—H3 | 120.9 | C18—C19—H17 | 118.5 |
N3—C8—N4 | 119.1 (2) | C17—C18—C19 | 118.8 (3) |
N3—C8—S1 | 127.34 (17) | C17—C18—H16 | 120.6 |
N4—C8—S1 | 113.48 (17) | C19—C18—H16 | 120.6 |
N2—C6—C1 | 115.1 (2) | C18—C17—C16 | 119.3 (3) |
N2—C6—C7 | 124.1 (2) | C18—C17—H15 | 120.3 |
C1—C6—C7 | 120.7 (2) | C16—C17—H15 | 120.3 |
C14—C9—C10 | 119.0 (2) | C26—C25—C24 | 120.6 (3) |
C14—C9—N4 | 125.1 (2) | C26—C25—H23 | 119.7 |
C10—C9—N4 | 115.9 (2) | C24—C25—H23 | 119.7 |
C11—C10—C9 | 120.7 (3) | C26—C27—C28 | 120.0 (3) |
C11—C10—H9 | 119.7 | C26—C27—H25 | 120.0 |
C9—C10—H9 | 119.7 | C28—C27—H25 | 120.0 |
C9—C14—C13 | 119.5 (3) | C25—C26—C27 | 120.0 (3) |
C9—C14—H13 | 120.3 | C25—C26—H24 | 120.0 |
C13—C14—H13 | 120.3 | C27—C26—H24 | 120.0 |
C6—C7—H5 | 109.5 | C20—N6—N7 | 115.53 (19) |
C6—C7—H6 | 109.5 | C20—N6—Cd1 | 122.35 (16) |
H5—C7—H6 | 109.5 | N7—N6—Cd1 | 122.07 (14) |
C6—C7—H7 | 109.5 | C19—N5—C15 | 118.3 (2) |
H5—C7—H7 | 109.5 | C19—N5—Cd1 | 125.71 (18) |
H6—C7—H7 | 109.5 | C15—N5—Cd1 | 115.53 (15) |
C13—C12—C11 | 119.2 (3) | C22—N7—N6 | 115.70 (19) |
C13—C12—H11 | 120.4 | C22—N8—C23 | 127.6 (2) |
C11—C12—H11 | 120.4 | C22—N8—H21 | 114.8 (18) |
C12—C11—C10 | 120.2 (3) | C23—N8—H21 | 115.6 (18) |
C12—C11—H10 | 119.9 | C20—C21—H18 | 109.5 |
C10—C11—H10 | 119.9 | C20—C21—H19 | 109.5 |
C12—C13—C14 | 121.5 (3) | H18—C21—H19 | 109.5 |
C12—C13—H12 | 119.3 | C20—C21—H20 | 109.5 |
C14—C13—H12 | 119.3 | H18—C21—H20 | 109.5 |
C6—N2—N3 | 117.64 (19) | H19—C21—H20 | 109.5 |
C6—N2—Cd1 | 121.55 (15) | ||
N6—Cd1—S1—C8 | −124.64 (10) | N6—Cd1—N1—C1 | 155.39 (17) |
N2—Cd1—S1—C8 | 25.28 (9) | N2—Cd1—N1—C1 | 6.27 (17) |
N1—Cd1—S1—C8 | 53.53 (11) | N5—Cd1—N1—C1 | 87.45 (18) |
N5—Cd1—S1—C8 | −53.81 (10) | S1—Cd1—N1—C1 | −22.8 (2) |
S2—Cd1—S1—C8 | 157.47 (8) | S2—Cd1—N1—C1 | −128.71 (17) |
N6—Cd1—S2—C22 | −2.87 (9) | Cd1—S2—C22—N7 | 2.4 (2) |
N2—Cd1—S2—C22 | −177.49 (10) | Cd1—S2—C22—N8 | −178.32 (17) |
N1—Cd1—S2—C22 | −114.55 (10) | N6—C20—C15—N5 | 4.1 (3) |
N5—Cd1—S2—C22 | −12.87 (12) | C21—C20—C15—N5 | −175.7 (2) |
S1—Cd1—S2—C22 | 109.27 (8) | N6—C20—C15—C16 | −176.0 (2) |
N1—C1—C2—C3 | 0.3 (4) | C21—C20—C15—C16 | 4.3 (4) |
C6—C1—C2—C3 | 179.7 (2) | C28—C23—C24—C25 | 1.0 (4) |
C1—C2—C3—C4 | 1.0 (4) | N8—C23—C24—C25 | −179.6 (3) |
C2—C3—C4—C5 | −1.6 (5) | N5—C15—C16—C17 | 0.4 (4) |
N1—C5—C4—C3 | 1.0 (5) | C20—C15—C16—C17 | −179.6 (2) |
Cd1—S1—C8—N3 | −31.2 (2) | C24—C23—C28—C27 | −1.3 (5) |
Cd1—S1—C8—N4 | 151.43 (17) | N8—C23—C28—C27 | 179.3 (3) |
N1—C1—C6—N2 | 11.0 (3) | N5—C19—C18—C17 | 0.2 (5) |
C2—C1—C6—N2 | −168.4 (2) | C19—C18—C17—C16 | −0.1 (5) |
N1—C1—C6—C7 | −169.2 (2) | C15—C16—C17—C18 | −0.1 (5) |
C2—C1—C6—C7 | 11.4 (4) | C23—C24—C25—C26 | 0.1 (5) |
C14—C9—C10—C11 | −1.3 (4) | C23—C28—C27—C26 | 0.7 (5) |
N4—C9—C10—C11 | 177.3 (3) | C24—C25—C26—C27 | −0.8 (6) |
C10—C9—C14—C13 | 0.7 (4) | C28—C27—C26—C25 | 0.4 (6) |
N4—C9—C14—C13 | −177.7 (3) | C15—C20—N6—N7 | 179.82 (18) |
C13—C12—C11—C10 | −0.4 (5) | C21—C20—N6—N7 | −0.4 (3) |
C9—C10—C11—C12 | 1.1 (4) | C15—C20—N6—Cd1 | 2.1 (3) |
C11—C12—C13—C14 | −0.1 (5) | C21—C20—N6—Cd1 | −178.17 (17) |
C9—C14—C13—C12 | 0.0 (5) | N2—Cd1—N6—C20 | −6.2 (3) |
C1—C6—N2—N3 | −175.47 (19) | N1—Cd1—N6—C20 | −89.70 (19) |
C7—C6—N2—N3 | 4.7 (4) | N5—Cd1—N6—C20 | −4.35 (17) |
C1—C6—N2—Cd1 | −5.3 (3) | S1—Cd1—N6—C20 | 88.90 (18) |
C7—C6—N2—Cd1 | 174.9 (2) | S2—Cd1—N6—C20 | −177.89 (19) |
N6—Cd1—N2—C6 | −95.5 (2) | N2—Cd1—N6—N7 | 176.23 (14) |
N1—Cd1—N2—C6 | −0.13 (18) | N1—Cd1—N6—N7 | 92.71 (17) |
N5—Cd1—N2—C6 | −97.20 (19) | N5—Cd1—N6—N7 | 178.06 (18) |
S1—Cd1—N2—C6 | 158.52 (19) | S1—Cd1—N6—N7 | −88.69 (16) |
S2—Cd1—N2—C6 | 73.6 (2) | S2—Cd1—N6—N7 | 4.52 (15) |
N6—Cd1—N2—N3 | 74.4 (2) | C18—C19—N5—C15 | 0.1 (4) |
N1—Cd1—N2—N3 | 169.78 (18) | C18—C19—N5—Cd1 | −171.9 (2) |
N5—Cd1—N2—N3 | 72.71 (16) | C16—C15—N5—C19 | −0.4 (4) |
S1—Cd1—N2—N3 | −31.57 (15) | C20—C15—N5—C19 | 179.6 (2) |
S2—Cd1—N2—N3 | −116.53 (15) | C16—C15—N5—Cd1 | 172.36 (19) |
N3—C8—N4—C9 | 4.0 (4) | C20—C15—N5—Cd1 | −7.6 (3) |
S1—C8—N4—C9 | −178.4 (2) | N6—Cd1—N5—C19 | 178.4 (2) |
C14—C9—N4—C8 | −5.7 (5) | N2—Cd1—N5—C19 | −2.5 (2) |
C10—C9—N4—C8 | 175.8 (3) | N1—Cd1—N5—C19 | −69.6 (2) |
N4—C8—N3—N2 | −172.7 (2) | S1—Cd1—N5—C19 | 67.5 (2) |
S1—C8—N3—N2 | 10.1 (3) | S2—Cd1—N5—C19 | −171.19 (17) |
C6—N2—N3—C8 | −166.8 (2) | N6—Cd1—N5—C15 | 6.18 (15) |
Cd1—N2—N3—C8 | 23.0 (2) | N2—Cd1—N5—C15 | −174.70 (17) |
C4—C5—N1—C1 | 0.4 (4) | N1—Cd1—N5—C15 | 118.22 (17) |
C4—C5—N1—Cd1 | −168.1 (2) | S1—Cd1—N5—C15 | −104.72 (16) |
C2—C1—N1—C5 | −1.0 (4) | S2—Cd1—N5—C15 | 16.6 (2) |
C6—C1—N1—C5 | 179.6 (2) | N8—C22—N7—N6 | −178.4 (2) |
C2—C1—N1—Cd1 | 168.07 (19) | S2—C22—N7—N6 | 0.8 (3) |
C6—C1—N1—Cd1 | −11.3 (3) | C20—N6—N7—C22 | 177.8 (2) |
N6—Cd1—N1—C5 | −36.1 (2) | Cd1—N6—N7—C22 | −4.5 (3) |
N2—Cd1—N1—C5 | 174.8 (2) | N7—C22—N8—C23 | 10.8 (4) |
N5—Cd1—N1—C5 | −104.0 (2) | S2—C22—N8—C23 | −168.6 (2) |
S1—Cd1—N1—C5 | 145.7 (2) | C28—C23—N8—C22 | −44.0 (4) |
S2—Cd1—N1—C5 | 39.8 (2) | C24—C23—N8—C22 | 136.6 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H8···S1i | 0.84 (2) | 2.60 (3) | 3.437 (2) | 172 (2) |
N8—H21···S2ii | 0.83 (3) | 2.79 (3) | 3.513 (2) | 147 (2) |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x, −y, −z. |
Experimental details
Crystal data | |
Chemical formula | [Cd(C14H13N4S)2] |
Mr | 651.09 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 9.8452 (2), 13.0116 (3), 13.1736 (5) |
α, β, γ (°) | 116.495 (1), 105.757 (1), 96.122 (1) |
V (Å3) | 1401.81 (7) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.96 |
Crystal size (mm) | 0.22 × 0.14 × 0.11 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.816, 0.902 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 29421, 8199, 5975 |
Rint | 0.044 |
(sin θ/λ)max (Å−1) | 0.705 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.038, 0.080, 1.06 |
No. of reflections | 8199 |
No. of parameters | 362 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.75, −0.49 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), DIAMOND (Brandenburg, 2006), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H8···S1i | 0.84 (2) | 2.60 (3) | 3.437 (2) | 172 (2) |
N8—H21···S2ii | 0.83 (3) | 2.79 (3) | 3.513 (2) | 147 (2) |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x, −y, −z. |
Acknowledgements
We gratefully thank Professor Dr Manfredo Hörner (Federal University of Santa Maria, Brazil) for his help and support with the X-ray measurements. We also acknowledge the financial support through the DECIT/SCTIE-MS-CNPq-FAPERGS-Pronem-# 11/2029–1 and PRONEX-CNPq-FAPERGS projects.
References
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Thiosemicarbazone derivatives have a wide range of applications on biological inorganic chemistry. For example, some CdII thiosemicarbazone complexes show important antibacterial and antifungal activity against Acinetobacter baumannii and Aspergillus fumigatus, respectively (Alomar et al., 2010). In addition, the CdII ion has similarity with two biologically important elements, namely ZnII and CaII. The ionic radii for these cations are 0,95 Å, 0,74 Å and 1,00 Å, respectively, and the chemical similarity suggests that CdII may displace ZnII and CaII from critical biological sites (Kaim & Schwederski, 1995), making the cadmium coordination chemistry very attractive. As part of our study of thiosemicarbazone derivatives, we report herein the synthesis and the crystal structure of a new CdII complex with 2-acetylpyridine-(4-phenylthiosemicarbazone).
In the title compound, in which the molecular structure unit matches the asymmetric unit, the CdII ion is six-coordinated in a distorted octahedral environment by two deprotonated 2-acetylpyridine-(4-phenylthiosemicarbazone) ligands acting in a tridentate chelating mode, forming five-membered rings (Fig. 1). The selected bond angles formed between donor atoms trough the Cd1 atom are N6—Cd1—N2 = 151.43 (7)°, N1—Cd1—S1 = 134.61 (5)° and N5—Cd1—S2 = 143.06 (5)° and show clearly a distorted octahedral environment. The displacement from ideal coordination geometry is probably a consequence of the geometrical requirements of the ligand and of crystal packing interactions.
The acidic hydrogen of the hydrazine fragment is lost by the reaction with KOH, which is in agreement for thiosemicarbazone derivatives prepared from aldehydes or ketones. The negative charge is delocalized over the C—N—N—C—S fragment as indicated by their intermediate bond distances. The imine and thioamide C—N distances indicate considerable double bond character, while the C—S distance is consistent with increased single bond character. For the first ligand, these distances are C6—N2 = 1.285 (3) Å, N2—N3 = 1.385 (2) Å, N3—C8 = 1.311 (3) Å and C8—S1 = 1.748 (2) Å and for the second ligand, they are C20—N6 = 1.291 (3) Å, N6—N7 = 1.373 (3) Å, N7—C22 = 1.305 (3) Å and C22—S2 = 1.738 (2) Å.
The two ligands are coordinated to the CdII ion in their meridional conformations with the S1/S2 thiolate and the N1/N5 pyridyl atoms cis to each other, while the N2/N6 azomethine atoms are trans to each other. A similar meridional conformation has also been observed in the MnII complex with the same thiosemicarbazone ligand (Kovala-Demertzi et al., 2005) and in several CdII complexes with tridentate "NNS"-chelating ligands derived from thiosemicarbazones (Ali et al., 2002). The two ligands show a Z—E—Z conformation for the donor atoms about the C1—C6/C6—N2/N3—C8 and the C15—C20/C20—N6/N7—C22 bonds, respectively.
The ligands are not planar (Fig. 1 and Fig. 2), the mean deviations from the least squares planes for the chelated fragments Cd1/N1/C1/C6/N2 and Cd1/N2/N3/C8/S1 amount to -0,0644 (16) ° for C1 and -0,2702 (12) ° for N2, respectively, and the dihedral angle between the two planes is 20,15 (10)°. The maximal deviation from the least squares plane through all non-hydrogen atoms for the acetylpyridine derivative fragment C1/C2/C3/C4/C5/C6/C7/N1 and for the phenyl-thiosemicarbazone derivative fragment C8/C9/C10/C11/C12/C13/C14/N2/N3/N4/S1 amount to 0,1120 (19) Å for C7 and 0,1301 (16) Å for N2, respectively, and the dihedral angle between the two planes is 30,76 (08)°.
Additionally, the mean deviations from the least squares planes for the chelated fragments Cd1/N5/C15/C20/N6 and Cd1/N6/N7/C22/S2 amount to 0,0489 (13) Å for N5 and 0,0371 (12) Å for N6, respectively, and the dihedral angle between the two planes is 4,31 (07)°. The maximal deviation from the least squares plane through all non-hydrogen atoms for the acetylpyridine derivative fragment C15/C16/C17/C18/C19/C20/C21/N5 and for the phenyl-thiosemicarbazone derivative fragment C22/C23/C24/C25/C26/C27/C28/N6/N7/N8/S2 amount to 0,0457 (17) Å for C21 and -0,5623 (31) Å for C28, respectively, and the dihedral angle between the two planes is 14,77 (11)°. The displacement from planarity, for both of the ligands, is probably a consequence of the coordination with the CdII ion and of crystal packing interactions.
The crystal packing is stabilized by intermolecular hydrogen bonding. The molecules are connected through inversion centers via pairs of N—H···S interactions (Table 1; N4—H8···S1i and N8—H21···S2ii), building a one-dimensional H-bonded polymer along the (0 1 1) direction (Fig. 2). Symmetry codes: (i) -x, -y + 1, -z + 1; (ii) -x, -y, -z.