metal-organic compounds
(2,2′-Bipyrimidine-κ2N1,N1′)bis(thiocyanato-κN)platinum(II)
aSchool of Applied Chemical Engineering, The Research Institute of Catalysis, Chonnam National University, Gwangju 500-757, Republic of Korea
*Correspondence e-mail: hakwang@chonnam.ac.kr
In the title complex, [Pt(NCS)2(C8H6N4)], the PtII ion is four-coordinated in a distorted square-planar environment defined by two pyrimidine N atoms derived from a chelating 2,2′-bipyrimidine (bpym) ligand and two mutually cis N atoms from two SCN− anions. The thiocyanate ligands are almost linear, displaying N—C—S bond angles of 178.6 (11) and 173.7 (11)°, and the N atoms are slightly bent coordinated to the Pt atom with Pt—N—C bond angles of 172.7 (9) and 160.4 (10)°. In the crystal, molecules are held together by C—H⋯S hydrogen bonds. Intramolecular C—H⋯N hydrogen bonds are also observed
Related literature
For the crystal structures of related PtII complexes [PtX2(bpym)] (X = Cl, I or Br), see: Kaim et al. (2002); Ha (2010, 2011).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2000); cell SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536812017552/bt5882sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812017552/bt5882Isup2.hkl
To a solution of K2PtCl4 (0.2087 g, 0.503 mmol) in H2O (15 ml) and acetone (15 ml) were added KSCN (0.5071 g, 5.218 mmol) and 2,2'-bipyrimidine (0.0809 g, 0.512 mmol), and refluxed for 3 h. After evaporation of the solvent, the residue was dissolved in CH3CN (20 ml), then filtered through a plug of silica gel (2 cm x 7 cm). The solvent of the
was removed in vacuo, the residue was washed with ether, and dried at 323 K, to give an orange powder (0.0686 g). Orange block-like crystals, suitable for X-ray analysis, were obtained by slow evaporation of a CH3CN solution at room temperature.H atoms were included in calculated positions and treated as riding atoms: C—H = 0.95 Å with Uiso(H) = 1.2Ueq(C). The highest peak (4.86 e Å-3) and the deepest hole (-1.72 e Å-3) in the difference Fourier map are located 0.91 Å and 0.79 Å, respectively, from the Pt1 atom.
Data collection: SMART (Bruker, 2000); cell
SAINT (Bruker, 2000); data reduction: SAINT (Bruker, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).[Pt(NCS)2(C8H6N4)] | F(000) = 872 |
Mr = 469.42 | Dx = 2.442 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 5056 reflections |
a = 11.0871 (8) Å | θ = 2.7–26.0° |
b = 9.8779 (7) Å | µ = 11.31 mm−1 |
c = 12.8790 (9) Å | T = 200 K |
β = 115.135 (1)° | Block, orange |
V = 1276.91 (16) Å3 | 0.34 × 0.28 × 0.28 mm |
Z = 4 |
Bruker SMART 1000 CCD diffractometer | 2467 independent reflections |
Radiation source: fine-focus sealed tube | 2179 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.026 |
ϕ and ω scans | θmax = 26.0°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | h = −13→13 |
Tmin = 0.680, Tmax = 1.000 | k = −12→11 |
7611 measured reflections | l = −15→12 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.105 | H-atom parameters constrained |
S = 1.09 | w = 1/[σ2(Fo2) + (0.030P)2 + 21.4936P] where P = (Fo2 + 2Fc2)/3 |
2467 reflections | (Δ/σ)max < 0.001 |
172 parameters | Δρmax = 4.86 e Å−3 |
0 restraints | Δρmin = −1.72 e Å−3 |
[Pt(NCS)2(C8H6N4)] | V = 1276.91 (16) Å3 |
Mr = 469.42 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 11.0871 (8) Å | µ = 11.31 mm−1 |
b = 9.8779 (7) Å | T = 200 K |
c = 12.8790 (9) Å | 0.34 × 0.28 × 0.28 mm |
β = 115.135 (1)° |
Bruker SMART 1000 CCD diffractometer | 2467 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | 2179 reflections with I > 2σ(I) |
Tmin = 0.680, Tmax = 1.000 | Rint = 0.026 |
7611 measured reflections |
R[F2 > 2σ(F2)] = 0.043 | 0 restraints |
wR(F2) = 0.105 | H-atom parameters constrained |
S = 1.09 | w = 1/[σ2(Fo2) + (0.030P)2 + 21.4936P] where P = (Fo2 + 2Fc2)/3 |
2467 reflections | Δρmax = 4.86 e Å−3 |
172 parameters | Δρmin = −1.72 e Å−3 |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Pt1 | 0.16191 (4) | 0.40380 (4) | 0.58301 (3) | 0.04005 (15) | |
S1 | −0.0058 (3) | 0.6087 (4) | 0.8261 (3) | 0.0601 (8) | |
S2 | 0.0260 (3) | −0.0068 (3) | 0.6854 (3) | 0.0519 (7) | |
N1 | 0.2144 (8) | 0.5882 (9) | 0.5497 (7) | 0.0382 (18) | |
N2 | 0.3270 (10) | 0.6962 (9) | 0.4524 (8) | 0.050 (2) | |
N3 | 0.3600 (10) | 0.4377 (10) | 0.3743 (8) | 0.049 (2) | |
N4 | 0.2425 (8) | 0.3496 (9) | 0.4767 (7) | 0.0385 (18) | |
N5 | 0.0853 (9) | 0.4748 (10) | 0.6838 (8) | 0.048 (2) | |
N6 | 0.1173 (10) | 0.2136 (11) | 0.6120 (8) | 0.058 (3) | |
C1 | 0.1920 (10) | 0.7047 (11) | 0.5879 (8) | 0.042 (2) | |
H1 | 0.1456 | 0.7078 | 0.6352 | 0.051* | |
C2 | 0.2375 (11) | 0.8237 (12) | 0.5579 (9) | 0.048 (3) | |
H2 | 0.2214 | 0.9091 | 0.5835 | 0.057* | |
C3 | 0.3061 (12) | 0.8148 (11) | 0.4906 (9) | 0.049 (3) | |
H3 | 0.3390 | 0.8950 | 0.4711 | 0.059* | |
C4 | 0.2822 (10) | 0.5887 (11) | 0.4827 (8) | 0.041 (2) | |
C5 | 0.2989 (10) | 0.4514 (11) | 0.4419 (9) | 0.041 (2) | |
C6 | 0.3601 (12) | 0.3115 (12) | 0.3349 (10) | 0.054 (3) | |
H6 | 0.4017 | 0.2973 | 0.2848 | 0.064* | |
C7 | 0.3040 (13) | 0.2034 (12) | 0.3627 (10) | 0.055 (3) | |
H7 | 0.3042 | 0.1161 | 0.3317 | 0.066* | |
C8 | 0.2465 (11) | 0.2250 (11) | 0.4376 (9) | 0.047 (2) | |
H8 | 0.2097 | 0.1511 | 0.4615 | 0.056* | |
C9 | 0.0462 (10) | 0.5294 (12) | 0.7422 (9) | 0.046 (3) | |
C10 | 0.0757 (10) | 0.1268 (10) | 0.6445 (9) | 0.038 (2) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Pt1 | 0.0392 (2) | 0.0493 (3) | 0.0308 (2) | −0.00470 (17) | 0.01392 (16) | 0.00473 (17) |
S1 | 0.0539 (17) | 0.082 (2) | 0.0512 (17) | 0.0017 (16) | 0.0284 (14) | −0.0038 (16) |
S2 | 0.0481 (15) | 0.0567 (17) | 0.0519 (16) | −0.0078 (13) | 0.0222 (13) | 0.0038 (13) |
N1 | 0.035 (4) | 0.052 (5) | 0.025 (4) | 0.000 (4) | 0.010 (3) | 0.002 (4) |
N2 | 0.068 (6) | 0.040 (5) | 0.051 (5) | −0.003 (4) | 0.034 (5) | 0.000 (4) |
N3 | 0.059 (6) | 0.050 (6) | 0.047 (5) | −0.002 (4) | 0.030 (5) | −0.001 (4) |
N4 | 0.041 (4) | 0.043 (5) | 0.030 (4) | −0.005 (4) | 0.014 (4) | 0.002 (4) |
N5 | 0.052 (5) | 0.058 (6) | 0.040 (5) | −0.004 (5) | 0.025 (4) | −0.007 (4) |
N6 | 0.062 (6) | 0.072 (7) | 0.039 (5) | −0.018 (5) | 0.020 (5) | 0.003 (5) |
C1 | 0.046 (6) | 0.045 (6) | 0.032 (5) | 0.003 (5) | 0.013 (4) | −0.009 (4) |
C2 | 0.049 (6) | 0.056 (7) | 0.032 (5) | 0.002 (5) | 0.012 (5) | −0.008 (5) |
C3 | 0.062 (7) | 0.043 (6) | 0.047 (6) | −0.012 (5) | 0.028 (5) | −0.007 (5) |
C4 | 0.036 (5) | 0.055 (6) | 0.029 (5) | −0.003 (5) | 0.011 (4) | 0.004 (4) |
C5 | 0.040 (5) | 0.043 (6) | 0.040 (6) | −0.005 (4) | 0.016 (5) | 0.000 (4) |
C6 | 0.066 (7) | 0.050 (7) | 0.052 (7) | 0.003 (6) | 0.032 (6) | −0.005 (5) |
C7 | 0.072 (8) | 0.044 (6) | 0.047 (6) | 0.008 (6) | 0.021 (6) | −0.002 (5) |
C8 | 0.053 (6) | 0.043 (6) | 0.043 (6) | −0.007 (5) | 0.019 (5) | −0.002 (5) |
C9 | 0.043 (6) | 0.048 (6) | 0.041 (6) | −0.006 (5) | 0.011 (5) | 0.009 (5) |
C10 | 0.048 (6) | 0.028 (5) | 0.041 (5) | −0.006 (4) | 0.023 (5) | 0.001 (4) |
Pt1—N1 | 2.014 (9) | N5—C9 | 1.151 (14) |
Pt1—N4 | 1.999 (8) | N6—C10 | 1.135 (13) |
Pt1—N5 | 1.958 (9) | C1—C2 | 1.397 (16) |
Pt1—N6 | 2.017 (11) | C1—H1 | 0.9500 |
S1—C9 | 1.625 (13) | C2—C3 | 1.378 (15) |
S2—C10 | 1.602 (10) | C2—H2 | 0.9500 |
N1—C1 | 1.316 (13) | C3—H3 | 0.9500 |
N1—C4 | 1.363 (13) | C4—C5 | 1.494 (15) |
N2—C4 | 1.301 (13) | C6—C7 | 1.359 (17) |
N2—C3 | 1.328 (14) | C6—H6 | 0.9500 |
N3—C5 | 1.318 (14) | C7—C8 | 1.380 (16) |
N3—C6 | 1.346 (14) | C7—H7 | 0.9500 |
N4—C8 | 1.338 (13) | C8—H8 | 0.9500 |
N4—C5 | 1.357 (13) | ||
N5—Pt1—N4 | 174.5 (4) | C1—C2—H2 | 120.6 |
N5—Pt1—N1 | 93.6 (4) | N2—C3—C2 | 121.3 (11) |
N4—Pt1—N1 | 80.9 (3) | N2—C3—H3 | 119.4 |
N5—Pt1—N6 | 90.1 (4) | C2—C3—H3 | 119.4 |
N4—Pt1—N6 | 95.4 (4) | N2—C4—N1 | 125.1 (10) |
N1—Pt1—N6 | 176.2 (4) | N2—C4—C5 | 121.0 (9) |
C1—N1—C4 | 118.5 (9) | N1—C4—C5 | 113.8 (9) |
C1—N1—Pt1 | 126.4 (7) | N3—C5—N4 | 125.5 (10) |
C4—N1—Pt1 | 115.1 (7) | N3—C5—C4 | 120.1 (9) |
C4—N2—C3 | 117.4 (9) | N4—C5—C4 | 114.4 (9) |
C5—N3—C6 | 115.3 (10) | N3—C6—C7 | 123.7 (11) |
C8—N4—C5 | 117.6 (9) | N3—C6—H6 | 118.1 |
C8—N4—Pt1 | 126.9 (7) | C7—C6—H6 | 118.1 |
C5—N4—Pt1 | 115.5 (7) | C6—C7—C8 | 117.5 (11) |
C9—N5—Pt1 | 172.7 (9) | C6—C7—H7 | 121.3 |
C10—N6—Pt1 | 160.4 (10) | C8—C7—H7 | 121.3 |
N1—C1—C2 | 118.9 (10) | N4—C8—C7 | 120.3 (10) |
N1—C1—H1 | 120.5 | N4—C8—H8 | 119.8 |
C2—C1—H1 | 120.5 | C7—C8—H8 | 119.8 |
C3—C2—C1 | 118.8 (10) | N5—C9—S1 | 178.6 (11) |
C3—C2—H2 | 120.6 | N6—C10—S2 | 173.7 (11) |
N5—Pt1—N1—C1 | −1.9 (8) | Pt1—N1—C4—N2 | −178.9 (8) |
N4—Pt1—N1—C1 | 177.6 (9) | C1—N1—C4—C5 | −178.5 (8) |
N5—Pt1—N1—C4 | 176.6 (7) | Pt1—N1—C4—C5 | 2.8 (10) |
N4—Pt1—N1—C4 | −3.9 (7) | C6—N3—C5—N4 | 2.6 (16) |
N1—Pt1—N4—C8 | −175.8 (9) | C6—N3—C5—C4 | −174.8 (10) |
N6—Pt1—N4—C8 | 5.2 (9) | C8—N4—C5—N3 | −1.5 (16) |
N1—Pt1—N4—C5 | 4.4 (7) | Pt1—N4—C5—N3 | 178.3 (9) |
N6—Pt1—N4—C5 | −174.5 (7) | C8—N4—C5—C4 | 176.0 (9) |
N5—Pt1—N6—C10 | 5 (3) | Pt1—N4—C5—C4 | −4.2 (11) |
N4—Pt1—N6—C10 | −174 (3) | N2—C4—C5—N3 | 0.2 (16) |
C4—N1—C1—C2 | 0.4 (14) | N1—C4—C5—N3 | 178.5 (9) |
Pt1—N1—C1—C2 | 178.9 (7) | N2—C4—C5—N4 | −177.5 (9) |
N1—C1—C2—C3 | −0.9 (15) | N1—C4—C5—N4 | 0.9 (13) |
C4—N2—C3—C2 | −1.2 (17) | C5—N3—C6—C7 | −1.1 (18) |
C1—C2—C3—N2 | 1.3 (17) | N3—C6—C7—C8 | −1.4 (19) |
C3—N2—C4—N1 | 0.7 (16) | C5—N4—C8—C7 | −1.3 (15) |
C3—N2—C4—C5 | 178.8 (10) | Pt1—N4—C8—C7 | 178.9 (8) |
C1—N1—C4—N2 | −0.3 (15) | C6—C7—C8—N4 | 2.6 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···N5 | 0.95 | 2.55 | 3.053 (15) | 114 |
C8—H8···N6 | 0.95 | 2.62 | 3.138 (15) | 115 |
C8—H8···S2i | 0.95 | 2.87 | 3.496 (11) | 124 |
Symmetry code: (i) −x, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Pt(NCS)2(C8H6N4)] |
Mr | 469.42 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 200 |
a, b, c (Å) | 11.0871 (8), 9.8779 (7), 12.8790 (9) |
β (°) | 115.135 (1) |
V (Å3) | 1276.91 (16) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 11.31 |
Crystal size (mm) | 0.34 × 0.28 × 0.28 |
Data collection | |
Diffractometer | Bruker SMART 1000 CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2000) |
Tmin, Tmax | 0.680, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7611, 2467, 2179 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.105, 1.09 |
No. of reflections | 2467 |
No. of parameters | 172 |
H-atom treatment | H-atom parameters constrained |
w = 1/[σ2(Fo2) + (0.030P)2 + 21.4936P] where P = (Fo2 + 2Fc2)/3 | |
Δρmax, Δρmin (e Å−3) | 4.86, −1.72 |
Computer programs: SMART (Bruker, 2000), SAINT (Bruker, 2000), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···N5 | 0.95 | 2.55 | 3.053 (15) | 113.5 |
C8—H8···N6 | 0.95 | 2.62 | 3.138 (15) | 114.6 |
C8—H8···S2i | 0.95 | 2.87 | 3.496 (11) | 124.4 |
Symmetry code: (i) −x, −y, −z+1. |
Acknowledgements
This work was supported by the Priority Research Centers Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science and Technology (2011–0030747).
References
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Crystal structures of PtII complexes with 2,2'-bipyrimidine (bpym; C8H6N4) and halogen ions, [PtX2(bpym)] (X = Cl, I or Br), have been reported previously (Kaim et al., 2002; Ha, 2010; Ha, 2011).
In the title complex, [Pt(NCS)2(bpym)], the PtII ion is four-coordinated in a distorted square-planar environment defined by two pyrimidine N atoms derived from a chelating bpym ligand and two mutually cis N atoms from two SCN- anions (Fig. 1). The main contribution to the distortion is the tight N1—Pt1—N4 chelate angle of 80.9 (3)°, which results in non-linear trans axes [<N1—Pt1—N6 = 176.2 (4)° and <N4—Pt1—N5 = 174.5 (4)°]. The Pt—N(bpym) and Pt—N(NCS) bond lengths are nearly equivalent [Pt—N: 1.958 (9)–2.017 (11) Å] (Table 1). The thiocyanato ligands are almost linear displaying N—C—S bond angles of 178.6 (11)° and 173.7 (11)°, and the N atoms are slightly bent coordinated to the Pt atom with the Pt—N—C bond angles of 172.7 (9)° and 160.4 (10)°, characteristic of an N-bonded conformation. The nearly planar bpym ligand [maximum deviation = 0.09 (1) Å] is slightly inclined to the least-squares plane of the PtN4 unit [maximum deviation = 0.015 (5) Å], making a dihedral angle of 3.6 (5)°. In the crystal, two complex molecules are assembled by intermolecular C—H···S hydrogen bonds with C···S = 3.496 (11) Å, forming a dimer-type species (Fig. 2, Table 2). Intramolecular C—H···N hydrogen bonds are also observed (Table 2).