organic compounds
2-Amino-3-[(E)-(2-hydroxy-3-methylbenzylidene)amino]but-2-enedinitrile
aDepartment of Chemistry, Girls Section, King Abdulaziz University, PO Box 6171, Jeddah 21442, Saudi Arabia, and bOndokuz Mayıs University, Arts and Sciences Faculty, Department of Physics, 55139-Samsun, Turkey
*Correspondence e-mail: wayfield8@yahoo.com
The title compound, C12H10N4O, is a Schiff base obtained from the condensation of diaminomaleonitrile and 2-hydroxy-3-methylbenzaldehyde. The molecule is roughly planar, with an r.m.s. deviation of 0.0354 Å, and adopts the phenol–imine tautomeric form. An intramolecular O—H⋯N hydrogen bond involving the O—H group and the azomethine N atom generates an S(6) ring. In the crystal, there are two N—H⋯N hydrogen bonds.
Related literature
For the biological properties of et al. (2011) and for their use in coordination chemistry, see: Aazam et al. (2011); Kargar et al. (2009); Yeap et al. (2009). For graph-set notation, see: Bernstein et al., (1995). For related structures, see: Aazam & Büyükgüngör (2010); Hökelek et al. (2000); Odabaşoğlu et al. (2005); Rivera et al. (2006).
see: Da SilvaExperimental
Crystal data
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Refinement
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Data collection: X-AREA (Stoe & Cie, 2002); cell X-AREA; data reduction: X-RED32 (Stoe & Cie, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536812015243/go2051sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812015243/go2051Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812015243/go2051Isup3.cml
The H atoms bonded to oxygen and nitrogen atoms were located in Fourier map and refined isotropically. Other hydrogen atoms were positioned geometrically and treated using a riding model, fixing bond lengths at 0.93 and 0.96 Å for CH (aromatic) and CH3, respectively. The displacement parameters of the H atoms were constrained with Uiso(H) = 1.2Ueq (aromatic and methyl C).
Data collection: X-AREA (Stoe & Cie, 2002); cell
X-AREA (Stoe & Cie, 2002); data reduction: X-RED32 (Stoe & Cie, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).C12H10N4O | F(000) = 472 |
Mr = 226.24 | Dx = 1.333 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 16504 reflections |
a = 6.9041 (6) Å | θ = 2.3–28.0° |
b = 11.8791 (7) Å | µ = 0.09 mm−1 |
c = 14.0282 (11) Å | T = 296 K |
β = 101.600 (7)° | Plate, brown |
V = 1127.02 (15) Å3 | 0.76 × 0.48 × 0.03 mm |
Z = 4 |
Stoe IPDS 2 diffractometer | 2336 independent reflections |
Radiation source: fine-focus sealed tube | 1700 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.054 |
rotation method scans | θmax = 26.5°, θmin = 2.3° |
Absorption correction: integration (X-RED32; Stoe & Cie, 2002) | h = −8→8 |
Tmin = 0.949, Tmax = 0.996 | k = −14→14 |
16504 measured reflections | l = −17→17 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.059 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.132 | w = 1/[σ2(Fo2) + (0.0644P)2 + 0.0085P] where P = (Fo2 + 2Fc2)/3 |
S = 1.14 | (Δ/σ)max < 0.001 |
2336 reflections | Δρmax = 0.15 e Å−3 |
168 parameters | Δρmin = −0.16 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.008 (2) |
C12H10N4O | V = 1127.02 (15) Å3 |
Mr = 226.24 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 6.9041 (6) Å | µ = 0.09 mm−1 |
b = 11.8791 (7) Å | T = 296 K |
c = 14.0282 (11) Å | 0.76 × 0.48 × 0.03 mm |
β = 101.600 (7)° |
Stoe IPDS 2 diffractometer | 2336 independent reflections |
Absorption correction: integration (X-RED32; Stoe & Cie, 2002) | 1700 reflections with I > 2σ(I) |
Tmin = 0.949, Tmax = 0.996 | Rint = 0.054 |
16504 measured reflections |
R[F2 > 2σ(F2)] = 0.059 | 0 restraints |
wR(F2) = 0.132 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.14 | Δρmax = 0.15 e Å−3 |
2336 reflections | Δρmin = −0.16 e Å−3 |
168 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.2927 (3) | 0.39788 (16) | 0.57527 (14) | 0.0412 (5) | |
C2 | 0.2741 (3) | 0.30861 (18) | 0.50843 (15) | 0.0451 (5) | |
C3 | 0.2980 (3) | 0.19643 (18) | 0.53978 (17) | 0.0507 (5) | |
C4 | 0.3421 (3) | 0.1774 (2) | 0.63866 (19) | 0.0579 (6) | |
H4 | 0.3581 | 0.1036 | 0.6609 | 0.069* | |
C5 | 0.3637 (3) | 0.2639 (2) | 0.70634 (17) | 0.0597 (6) | |
H5 | 0.3951 | 0.2480 | 0.7726 | 0.072* | |
C6 | 0.3382 (3) | 0.3731 (2) | 0.67447 (16) | 0.0518 (5) | |
H6 | 0.3514 | 0.4313 | 0.7196 | 0.062* | |
C7 | 0.2734 (4) | 0.1024 (2) | 0.4671 (2) | 0.0730 (7) | |
H7A | 0.3735 | 0.1081 | 0.4287 | 0.088* | |
H7B | 0.1452 | 0.1073 | 0.4254 | 0.088* | |
H7C | 0.2860 | 0.0315 | 0.5006 | 0.088* | |
C8 | 0.2653 (3) | 0.51404 (16) | 0.54458 (14) | 0.0426 (5) | |
H8 | 0.2785 | 0.5698 | 0.5920 | 0.051* | |
C9 | 0.2013 (3) | 0.65633 (15) | 0.42752 (14) | 0.0393 (5) | |
C10 | 0.1644 (3) | 0.68409 (16) | 0.33180 (14) | 0.0405 (5) | |
C11 | 0.2178 (3) | 0.74210 (17) | 0.50067 (15) | 0.0461 (5) | |
C12 | 0.1464 (3) | 0.80158 (18) | 0.30383 (15) | 0.0482 (5) | |
N1 | 0.2236 (2) | 0.54359 (13) | 0.45456 (11) | 0.0405 (4) | |
N2 | 0.1385 (3) | 0.61018 (17) | 0.25795 (15) | 0.0563 (5) | |
H2A | 0.112 (4) | 0.538 (3) | 0.2695 (19) | 0.077 (8)* | |
H2B | 0.130 (4) | 0.637 (2) | 0.199 (2) | 0.076 (8)* | |
N3 | 0.2305 (3) | 0.80465 (17) | 0.56309 (15) | 0.0664 (6) | |
N4 | 0.1280 (3) | 0.89245 (17) | 0.27921 (17) | 0.0709 (6) | |
O1 | 0.2304 (3) | 0.32719 (15) | 0.41171 (12) | 0.0668 (5) | |
H1 | 0.217 (4) | 0.400 (3) | 0.405 (2) | 0.081 (9)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0386 (10) | 0.0447 (11) | 0.0419 (11) | 0.0035 (8) | 0.0116 (8) | 0.0071 (9) |
C2 | 0.0471 (11) | 0.0469 (12) | 0.0413 (12) | 0.0045 (9) | 0.0090 (9) | 0.0061 (9) |
C3 | 0.0485 (12) | 0.0429 (12) | 0.0594 (14) | 0.0028 (9) | 0.0076 (10) | 0.0095 (10) |
C4 | 0.0520 (13) | 0.0504 (13) | 0.0705 (17) | 0.0023 (10) | 0.0108 (11) | 0.0236 (12) |
C5 | 0.0649 (14) | 0.0679 (16) | 0.0466 (13) | 0.0040 (11) | 0.0120 (11) | 0.0215 (12) |
C6 | 0.0563 (13) | 0.0597 (14) | 0.0417 (12) | 0.0015 (10) | 0.0149 (10) | 0.0064 (10) |
C7 | 0.0825 (17) | 0.0444 (13) | 0.0863 (19) | 0.0090 (12) | 0.0027 (14) | −0.0023 (13) |
C8 | 0.0473 (11) | 0.0408 (11) | 0.0415 (12) | 0.0017 (8) | 0.0135 (8) | 0.0006 (9) |
C9 | 0.0416 (10) | 0.0355 (10) | 0.0421 (11) | −0.0004 (8) | 0.0113 (8) | 0.0004 (8) |
C10 | 0.0430 (10) | 0.0345 (10) | 0.0436 (12) | −0.0030 (8) | 0.0077 (8) | 0.0026 (8) |
C11 | 0.0566 (13) | 0.0382 (11) | 0.0446 (12) | 0.0035 (9) | 0.0127 (10) | 0.0029 (10) |
C12 | 0.0548 (12) | 0.0404 (12) | 0.0482 (12) | −0.0029 (9) | 0.0072 (9) | 0.0055 (10) |
N1 | 0.0450 (9) | 0.0367 (8) | 0.0411 (10) | 0.0015 (7) | 0.0114 (7) | 0.0039 (7) |
N2 | 0.0836 (14) | 0.0420 (11) | 0.0416 (11) | −0.0110 (10) | 0.0084 (9) | 0.0022 (9) |
N3 | 0.0917 (15) | 0.0538 (12) | 0.0540 (12) | 0.0047 (10) | 0.0151 (11) | −0.0096 (10) |
N4 | 0.0901 (15) | 0.0433 (11) | 0.0779 (15) | 0.0048 (10) | 0.0134 (12) | 0.0155 (10) |
O1 | 0.1120 (14) | 0.0444 (9) | 0.0415 (10) | 0.0164 (9) | 0.0098 (9) | 0.0023 (7) |
C1—C6 | 1.395 (3) | C7—H7C | 0.9600 |
C1—C2 | 1.404 (3) | C8—N1 | 1.286 (2) |
C1—C8 | 1.447 (3) | C8—H8 | 0.9300 |
C2—O1 | 1.348 (3) | C9—C10 | 1.356 (3) |
C2—C3 | 1.403 (3) | C9—N1 | 1.392 (2) |
C3—C4 | 1.378 (3) | C9—C11 | 1.434 (3) |
C3—C7 | 1.499 (3) | C10—N2 | 1.342 (3) |
C4—C5 | 1.386 (4) | C10—C12 | 1.448 (3) |
C4—H4 | 0.9300 | C11—N3 | 1.138 (3) |
C5—C6 | 1.372 (3) | C12—N4 | 1.133 (3) |
C5—H5 | 0.9300 | N2—H2A | 0.89 (3) |
C6—H6 | 0.9300 | N2—H2B | 0.88 (3) |
C7—H7A | 0.9600 | O1—H1 | 0.88 (3) |
C7—H7B | 0.9600 | ||
C6—C1—C2 | 118.59 (18) | H7A—C7—H7B | 109.5 |
C6—C1—C8 | 119.22 (19) | C3—C7—H7C | 109.5 |
C2—C1—C8 | 122.19 (18) | H7A—C7—H7C | 109.5 |
O1—C2—C3 | 117.37 (19) | H7B—C7—H7C | 109.5 |
O1—C2—C1 | 121.37 (18) | N1—C8—C1 | 122.86 (18) |
C3—C2—C1 | 121.26 (19) | N1—C8—H8 | 118.6 |
C4—C3—C2 | 117.4 (2) | C1—C8—H8 | 118.6 |
C4—C3—C7 | 122.3 (2) | C10—C9—N1 | 119.49 (17) |
C2—C3—C7 | 120.3 (2) | C10—C9—C11 | 120.52 (17) |
C3—C4—C5 | 122.7 (2) | N1—C9—C11 | 119.99 (17) |
C3—C4—H4 | 118.7 | N2—C10—C9 | 125.07 (19) |
C5—C4—H4 | 118.7 | N2—C10—C12 | 115.50 (19) |
C6—C5—C4 | 119.2 (2) | C9—C10—C12 | 119.43 (18) |
C6—C5—H5 | 120.4 | N3—C11—C9 | 175.5 (2) |
C4—C5—H5 | 120.4 | N4—C12—C10 | 177.7 (2) |
C5—C6—C1 | 120.9 (2) | C8—N1—C9 | 121.38 (16) |
C5—C6—H6 | 119.6 | C10—N2—H2A | 118.9 (17) |
C1—C6—H6 | 119.6 | C10—N2—H2B | 117.7 (18) |
C3—C7—H7A | 109.5 | H2A—N2—H2B | 123 (2) |
C3—C7—H7B | 109.5 | C2—O1—H1 | 105.2 (19) |
C6—C1—C2—O1 | 179.99 (18) | C2—C1—C6—C5 | −0.2 (3) |
C8—C1—C2—O1 | 0.3 (3) | C8—C1—C6—C5 | 179.5 (2) |
C6—C1—C2—C3 | 0.8 (3) | C6—C1—C8—N1 | 179.86 (18) |
C8—C1—C2—C3 | −178.93 (19) | C2—C1—C8—N1 | −0.4 (3) |
O1—C2—C3—C4 | −179.80 (19) | N1—C9—C10—N2 | 2.9 (3) |
C1—C2—C3—C4 | −0.6 (3) | C11—C9—C10—N2 | −177.18 (19) |
O1—C2—C3—C7 | −0.5 (3) | N1—C9—C10—C12 | −178.38 (17) |
C1—C2—C3—C7 | 178.8 (2) | C11—C9—C10—C12 | 1.5 (3) |
C2—C3—C4—C5 | −0.2 (3) | C1—C8—N1—C9 | −178.97 (18) |
C7—C3—C4—C5 | −179.5 (2) | C10—C9—N1—C8 | 177.62 (18) |
C3—C4—C5—C6 | 0.8 (3) | C11—C9—N1—C8 | −2.3 (3) |
C4—C5—C6—C1 | −0.5 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···N1 | 0.88 (3) | 1.83 (3) | 2.643 (2) | 153 (3) |
N2—H2A···N4i | 0.89 (3) | 2.40 (3) | 3.156 (3) | 142 (2) |
N2—H2B···N3ii | 0.88 (3) | 2.26 (3) | 3.098 (3) | 159 (2) |
Symmetry codes: (i) −x, y−1/2, −z+1/2; (ii) x, −y+3/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C12H10N4O |
Mr | 226.24 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 296 |
a, b, c (Å) | 6.9041 (6), 11.8791 (7), 14.0282 (11) |
β (°) | 101.600 (7) |
V (Å3) | 1127.02 (15) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.76 × 0.48 × 0.03 |
Data collection | |
Diffractometer | Stoe IPDS 2 diffractometer |
Absorption correction | Integration (X-RED32; Stoe & Cie, 2002) |
Tmin, Tmax | 0.949, 0.996 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16504, 2336, 1700 |
Rint | 0.054 |
(sin θ/λ)max (Å−1) | 0.628 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.059, 0.132, 1.14 |
No. of reflections | 2336 |
No. of parameters | 168 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.15, −0.16 |
Computer programs: X-AREA (Stoe & Cie, 2002), X-RED32 (Stoe & Cie, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···N1 | 0.88 (3) | 1.83 (3) | 2.643 (2) | 153 (3) |
N2—H2A···N4i | 0.89 (3) | 2.40 (3) | 3.156 (3) | 142 (2) |
N2—H2B···N3ii | 0.88 (3) | 2.26 (3) | 3.098 (3) | 159 (2) |
Symmetry codes: (i) −x, y−1/2, −z+1/2; (ii) x, −y+3/2, z−1/2. |
Acknowledgements
The authors acknowledge the Faculty of Arts and Sciences, Ondokuz Mayıs University, Turkey, for the use of the diffractometer (purchased under grant F. 279 of University Research Fund) and King Abdulaziz University and the Deanship of Scientific Research for financial support (grant No. 17–013/430).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Tetrameric HCN (diaminomaleonitrile, DAMN) is one of the most versatile reagents in organic chemistry. It has been used as a precursor for producing nucleotides and for synthesizing a wide variety of heterocyclic compounds. These compounds are important as synthetic intermediates and they are also used in pharmacology (Da Silva et al., 2011; Rivera et al., 2006).
Schiff bases derived from DAMN have also been used as versatile ligands in coordination chemistry (Aazam et al., 2011; Kargar et al., 2009; Yeap et al., 2009). There are two types of intra-molecular hydrogen bonds in Schiff bases, which may be stabilized either in keto-amine (N—H···O hydrogen bond) (Hökelek et al., 2000) or phenol-imine (N···H—O hydrogen bond) tautomeric forms (Odabaşoǧlu et al., 2005; Aazam & Büyükgüngör, 2010). The present X-ray investigation shows that the title compound is a Schiff base and exists in the phenol-imine form in the solid-state.
The molecular structure of the title compound is shown in Figure 1. An intramolecular O1—H1···N1 hydrogen bond, a characteristic hydrogen bond for Schiff bases, leads to the formation of a S(6) six-membered ring (Figure 1) (Bernstein et al., 1995).
The N2—H2A···N4i (i; -x, y - 1/2, -z + 1/2) and N2—H2B···N3ii (ii; x, -y + 3/2, z - 1/2) hydrogen bonds generate a C(5) zigzag chain running parallel to the b axis and a C(6) chain running parallel to the c axis, respectively, (Figure 2–3). The intersection of the C(5) and C(6) chains produce alternating R44(18) and R44(22) ring motives, (Figure 4), (Bernstein et al., 1995) which link the molecules into corrugated sheets which lie in the b,c plane. Details of the hydrogen bonds are given in Table 1.