organic compounds
2,4,6,8-Tetrakis(4-chlorophenyl)-3,7-diazabicyclo[3.3.1]nonan-9-one O-benzyloxime acetone monosolvate
aDepartment of Biomedicinal Chemistry, Inje University, Gimhae, Gyeongnam 621 749, Republic of Korea, and bDepartment of Chemistry, IIT Madras, Chennai 600 036, TamilNadu, India
*Correspondence e-mail: parthisivam@yahoo.co.in
In the title compound, C38H31Cl4N3O·C3H6O, the 3,7-diaza-bicycle exists in a chair–boat conformation. The 4-chlorophenyl groups attached to the chair form are equatorially oriented at an angle of 18.15 (3)° with respect to each other, whereas the 4-chlorophenyl groups attached to the boat form are oriented at an angle of 32.64 (3)°. In the crystal, molecules are linked by N—H⋯π and C—H⋯O interactions.
Related literature
For the synthesis and stereochemistry of 3,7-diazabicyclo[3.3.1]nonan-9-one derivatives, see: Parthiban et al. (2008). For the biological activity of 3,7-diazabicyclo[3.3.1]nonan-9-one derivatives and related structures, see: Parthiban et al. (2009, 2010); Asakawa (1995); Jayaraman & Avila (1981). For ring puckering parameters, see: Cremer & Pople (1975); Nardelli (1983); Luger & Bülow (1983).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell SAINT-Plus (Bruker, 2004); data reduction: SAINT-Plus; program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536812016509/hb6689sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812016509/hb6689Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812016509/hb6689Isup3.cml
The 2,4,6,8-tetrakis(4-chlorophenyl)-3,7-diazabicyclo[3.3.1]nonan-9-one was synthesized by a modified Mannich condensation in one-pot, using 4-chlorobenzaldehyde (0.2 mol, 28.12 g), acetone (0.05 mol, 3.7 ml) and ammonium acetate (0.1 mol, 7.7 g) in a 50 ml of absolute ethanol (Parthiban et al., 2008). The mixture was gently warmed on a hot plate at 303 K (30° C) with moderate stirring till the complete consumption of the starting materials, which was monitored by TLC. At the end, the crude 3,7-diazabicycle was separated by filtration and gently washed with 1:5 cold ethanol-ether mixture. The pure 2,4,6,8-tetrakis(4-chlorophenyl)-3,7-diazabicyclo[3.3.1]nonan-9-one (0.01 mol, 5.823 g) was condensed with O-benzylhydroxylamine hydrochloride (0.012 mol, 1.915 g) using sodium acetate trihydrate (0.03 mol, 3.06 g) as base in ethanol-chloroform 1:1 mixture to obtain the title oxime ether. Colourless prisms were obtained by slow evaporation of an acetone solution.
The nitrogen H atom was located in a difference Fourier map and refined isotropically. Other hydrogen atoms were fixed geometrically and allowed to ride on the parent carbon atoms with aromatic C—H = 0.93 Å, aliphatic C—H = 0.98 Å and methylene C—H = 0.97 Å. The displacement parameters were set for phenyl, methylene and aliphatic H atoms at Uiso(H) = 1.2Ueq(C) and for methyl H atoms at Uiso(H) = 1.5Ueq(C).
Data collection: APEX2 (Bruker, 2004); cell
SAINT-Plus (Bruker, 2004); data reduction: SAINT-Plus (Bruker, 2004); program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. Anistropic displacement representation of the molecule with atoms represented with 30% probability ellipsoids (H atoms are removed for clarity). |
C38H31Cl4N3O·C3H6O | F(000) = 1552 |
Mr = 745.54 | Dx = 1.286 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 6628 reflections |
a = 14.9237 (5) Å | θ = 1.6–25.0° |
b = 10.5064 (3) Å | µ = 0.35 mm−1 |
c = 24.6015 (7) Å | T = 293 K |
β = 93.116 (1)° | Prism, colourless |
V = 3851.7 (2) Å3 | 0.20 × 0.16 × 0.16 mm |
Z = 4 |
Bruker APEXII CCD diffractometer | 7173 independent reflections |
Radiation source: fine-focus sealed tube | 4263 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.040 |
ω and ϕ scan | θmax = 25.5°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −18→18 |
Tmin = 0.934, Tmax = 0.947 | k = −12→8 |
35931 measured reflections | l = −29→29 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.062 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.188 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0699P)2 + 3.3824P] where P = (Fo2 + 2Fc2)/3 |
7173 reflections | (Δ/σ)max = 0.005 |
475 parameters | Δρmax = 0.89 e Å−3 |
0 restraints | Δρmin = −0.29 e Å−3 |
C38H31Cl4N3O·C3H6O | V = 3851.7 (2) Å3 |
Mr = 745.54 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 14.9237 (5) Å | µ = 0.35 mm−1 |
b = 10.5064 (3) Å | T = 293 K |
c = 24.6015 (7) Å | 0.20 × 0.16 × 0.16 mm |
β = 93.116 (1)° |
Bruker APEXII CCD diffractometer | 7173 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | 4263 reflections with I > 2σ(I) |
Tmin = 0.934, Tmax = 0.947 | Rint = 0.040 |
35931 measured reflections |
R[F2 > 2σ(F2)] = 0.062 | 0 restraints |
wR(F2) = 0.188 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.89 e Å−3 |
7173 reflections | Δρmin = −0.29 e Å−3 |
475 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.2859 (2) | 0.4608 (3) | 0.27681 (13) | 0.0522 (8) | |
C2 | 0.2691 (2) | 0.3992 (3) | 0.33290 (12) | 0.0485 (7) | |
H2 | 0.2124 | 0.4308 | 0.3460 | 0.058* | |
C3 | 0.2670 (2) | 0.2506 (3) | 0.33063 (13) | 0.0482 (7) | |
C4 | 0.4313 (2) | 0.2457 (3) | 0.34865 (14) | 0.0484 (7) | |
C5 | 0.4330 (2) | 0.3935 (3) | 0.35421 (12) | 0.0495 (7) | |
H5 | 0.4803 | 0.4192 | 0.3812 | 0.059* | |
C6 | 0.4467 (2) | 0.4608 (3) | 0.29906 (13) | 0.0537 (8) | |
C7 | 0.3440 (2) | 0.4355 (3) | 0.37191 (12) | 0.0505 (8) | |
C8 | 0.2128 (2) | 0.4241 (3) | 0.23443 (12) | 0.0500 (8) | |
C9 | 0.2286 (2) | 0.3441 (3) | 0.19141 (13) | 0.0576 (8) | |
H9 | 0.2865 | 0.3149 | 0.1868 | 0.069* | |
C10 | 0.1592 (2) | 0.3064 (3) | 0.15477 (14) | 0.0627 (9) | |
H10 | 0.1704 | 0.2531 | 0.1257 | 0.075* | |
C11 | 0.0742 (2) | 0.3494 (4) | 0.16243 (14) | 0.0602 (9) | |
C12 | 0.0572 (2) | 0.4299 (4) | 0.20424 (14) | 0.0640 (9) | |
H12 | −0.0008 | 0.4592 | 0.2085 | 0.077* | |
C13 | 0.1257 (2) | 0.4674 (3) | 0.23989 (14) | 0.0603 (9) | |
H13 | 0.1139 | 0.5226 | 0.2682 | 0.072* | |
C14 | 0.1801 (2) | 0.2023 (3) | 0.35236 (13) | 0.0499 (7) | |
C15 | 0.1040 (2) | 0.1871 (3) | 0.31863 (14) | 0.0596 (9) | |
H15 | 0.1071 | 0.2026 | 0.2816 | 0.072* | |
C16 | 0.0231 (2) | 0.1492 (4) | 0.33852 (17) | 0.0721 (10) | |
H16 | −0.0278 | 0.1408 | 0.3153 | 0.086* | |
C17 | 0.0193 (2) | 0.1245 (4) | 0.39275 (18) | 0.0756 (11) | |
C18 | 0.0929 (3) | 0.1397 (4) | 0.42751 (16) | 0.0820 (12) | |
H18 | 0.0891 | 0.1241 | 0.4645 | 0.098* | |
C19 | 0.1732 (2) | 0.1785 (4) | 0.40740 (14) | 0.0676 (10) | |
H19 | 0.2233 | 0.1889 | 0.4312 | 0.081* | |
C20 | 0.5042 (2) | 0.1854 (3) | 0.38518 (13) | 0.0513 (8) | |
C21 | 0.4914 (2) | 0.1632 (3) | 0.43962 (14) | 0.0597 (9) | |
H21 | 0.4358 | 0.1804 | 0.4534 | 0.072* | |
C22 | 0.5599 (3) | 0.1161 (4) | 0.47385 (15) | 0.0685 (10) | |
H22 | 0.5511 | 0.1033 | 0.5106 | 0.082* | |
C23 | 0.6403 (2) | 0.0886 (4) | 0.45328 (17) | 0.0688 (10) | |
C24 | 0.6552 (2) | 0.1077 (4) | 0.39992 (17) | 0.0744 (11) | |
H24 | 0.7105 | 0.0878 | 0.3865 | 0.089* | |
C25 | 0.5870 (2) | 0.1571 (4) | 0.36575 (15) | 0.0645 (9) | |
H25 | 0.5972 | 0.1715 | 0.3293 | 0.077* | |
C26 | 0.5374 (2) | 0.4319 (3) | 0.27753 (13) | 0.0559 (8) | |
C27 | 0.6118 (3) | 0.4936 (4) | 0.29977 (17) | 0.0784 (11) | |
H27 | 0.6051 | 0.5533 | 0.3271 | 0.094* | |
C28 | 0.6954 (3) | 0.4685 (5) | 0.2823 (2) | 0.0986 (15) | |
H28 | 0.7454 | 0.5104 | 0.2978 | 0.118* | |
C29 | 0.7049 (3) | 0.3807 (5) | 0.2415 (2) | 0.0927 (14) | |
C30 | 0.6326 (3) | 0.3186 (5) | 0.21902 (17) | 0.0860 (13) | |
H30 | 0.6395 | 0.2587 | 0.1917 | 0.103* | |
C31 | 0.5497 (3) | 0.3444 (4) | 0.23664 (15) | 0.0698 (10) | |
H31 | 0.5001 | 0.3021 | 0.2208 | 0.084* | |
C32 | 0.3717 (4) | 0.5788 (5) | 0.49734 (18) | 0.1062 (16) | |
H32A | 0.3446 | 0.6590 | 0.4858 | 0.127* | |
H32B | 0.4242 | 0.5979 | 0.5208 | 0.127* | |
C33 | 0.3056 (4) | 0.5049 (6) | 0.52925 (17) | 0.0944 (14) | |
C34 | 0.2425 (5) | 0.5741 (8) | 0.5549 (2) | 0.136 (2) | |
H34 | 0.2418 | 0.6624 | 0.5522 | 0.163* | |
C35 | 0.1807 (6) | 0.5133 (14) | 0.5844 (4) | 0.194 (5) | |
H35 | 0.1375 | 0.5612 | 0.6010 | 0.233* | |
C36 | 0.1804 (9) | 0.3853 (15) | 0.5902 (4) | 0.198 (6) | |
H36 | 0.1380 | 0.3457 | 0.6107 | 0.238* | |
C37 | 0.2455 (9) | 0.3128 (11) | 0.5645 (4) | 0.198 (5) | |
H37 | 0.2464 | 0.2245 | 0.5671 | 0.238* | |
C38 | 0.3095 (5) | 0.3786 (6) | 0.5345 (2) | 0.1211 (19) | |
H38 | 0.3545 | 0.3334 | 0.5183 | 0.145* | |
C39 | 0.0817 (4) | 0.6394 (6) | 0.4002 (2) | 0.1086 (17) | |
C40 | 0.0896 (7) | 0.7529 (8) | 0.4329 (3) | 0.213 (4) | |
H40A | 0.0921 | 0.8260 | 0.4096 | 0.320* | |
H40B | 0.1433 | 0.7486 | 0.4561 | 0.320* | |
H40C | 0.0385 | 0.7598 | 0.4548 | 0.320* | |
C41 | 0.0762 (4) | 0.5122 (7) | 0.4283 (3) | 0.142 (2) | |
H41A | 0.0714 | 0.4458 | 0.4015 | 0.213* | |
H41B | 0.0245 | 0.5106 | 0.4498 | 0.213* | |
H41C | 0.1293 | 0.4993 | 0.4514 | 0.213* | |
N1 | 0.37419 (18) | 0.4222 (3) | 0.26073 (11) | 0.0534 (7) | |
N2 | 0.34337 (17) | 0.2004 (3) | 0.36383 (11) | 0.0519 (7) | |
N3 | 0.3236 (2) | 0.4941 (3) | 0.41573 (12) | 0.0745 (9) | |
O1 | 0.39933 (19) | 0.5102 (3) | 0.44974 (12) | 0.0930 (9) | |
O2 | 0.0791 (4) | 0.6448 (5) | 0.35250 (17) | 0.1589 (19) | |
Cl1 | −0.01371 (7) | 0.29806 (12) | 0.11818 (4) | 0.0871 (4) | |
Cl2 | −0.08182 (8) | 0.07631 (17) | 0.41840 (6) | 0.1228 (5) | |
Cl3 | 0.72648 (8) | 0.03096 (14) | 0.49745 (6) | 0.1128 (5) | |
Cl4 | 0.81177 (10) | 0.3490 (2) | 0.21892 (8) | 0.1549 (7) | |
H1 | 0.286 (2) | 0.557 (3) | 0.2824 (12) | 0.060 (9)* | |
H1A | 0.386 (2) | 0.453 (3) | 0.2293 (14) | 0.060 (10)* | |
H2A | 0.343 (2) | 0.117 (3) | 0.3623 (13) | 0.059 (10)* | |
H3 | 0.2687 (19) | 0.225 (3) | 0.2914 (13) | 0.050 (8)* | |
H4 | 0.4428 (18) | 0.225 (3) | 0.3110 (12) | 0.042 (8)* | |
H6 | 0.4450 (19) | 0.551 (3) | 0.3059 (12) | 0.049 (8)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.060 (2) | 0.0453 (19) | 0.0517 (19) | 0.0018 (16) | 0.0036 (15) | 0.0040 (15) |
C2 | 0.0522 (18) | 0.0474 (18) | 0.0463 (17) | 0.0051 (15) | 0.0063 (14) | 0.0020 (14) |
C3 | 0.0505 (18) | 0.0478 (18) | 0.0461 (18) | 0.0029 (15) | 0.0002 (14) | 0.0030 (14) |
C4 | 0.0481 (18) | 0.0472 (18) | 0.0501 (19) | 0.0000 (15) | 0.0030 (14) | −0.0009 (15) |
C5 | 0.0553 (19) | 0.0464 (18) | 0.0464 (17) | −0.0041 (15) | −0.0011 (14) | −0.0015 (14) |
C6 | 0.061 (2) | 0.048 (2) | 0.0523 (19) | −0.0040 (16) | 0.0021 (16) | 0.0021 (15) |
C7 | 0.066 (2) | 0.0440 (18) | 0.0410 (17) | 0.0014 (15) | 0.0035 (15) | 0.0010 (14) |
C8 | 0.0557 (19) | 0.0471 (18) | 0.0470 (17) | 0.0019 (15) | 0.0010 (14) | 0.0087 (14) |
C9 | 0.057 (2) | 0.063 (2) | 0.0536 (19) | 0.0061 (17) | 0.0057 (16) | 0.0036 (17) |
C10 | 0.068 (2) | 0.067 (2) | 0.0526 (19) | 0.0004 (19) | 0.0006 (17) | −0.0006 (17) |
C11 | 0.059 (2) | 0.068 (2) | 0.052 (2) | −0.0034 (18) | −0.0042 (16) | 0.0173 (17) |
C12 | 0.053 (2) | 0.074 (2) | 0.065 (2) | 0.0100 (18) | 0.0030 (17) | 0.0140 (19) |
C13 | 0.064 (2) | 0.061 (2) | 0.056 (2) | 0.0126 (18) | 0.0047 (17) | 0.0060 (16) |
C14 | 0.0512 (18) | 0.0451 (17) | 0.0533 (18) | 0.0049 (14) | 0.0008 (14) | 0.0026 (14) |
C15 | 0.059 (2) | 0.063 (2) | 0.0567 (19) | 0.0010 (17) | −0.0018 (16) | −0.0045 (17) |
C16 | 0.052 (2) | 0.080 (3) | 0.083 (3) | −0.0030 (19) | −0.0057 (19) | −0.008 (2) |
C17 | 0.052 (2) | 0.085 (3) | 0.091 (3) | −0.004 (2) | 0.011 (2) | 0.010 (2) |
C18 | 0.064 (2) | 0.114 (4) | 0.068 (2) | −0.002 (2) | 0.010 (2) | 0.029 (2) |
C19 | 0.052 (2) | 0.090 (3) | 0.060 (2) | −0.0023 (19) | −0.0036 (16) | 0.0198 (19) |
C20 | 0.0519 (19) | 0.0467 (18) | 0.0549 (19) | −0.0043 (15) | −0.0009 (15) | 0.0033 (15) |
C21 | 0.056 (2) | 0.062 (2) | 0.061 (2) | 0.0026 (17) | 0.0039 (16) | 0.0051 (17) |
C22 | 0.069 (2) | 0.073 (2) | 0.062 (2) | −0.009 (2) | −0.0059 (19) | 0.0179 (19) |
C23 | 0.053 (2) | 0.067 (2) | 0.084 (3) | −0.0034 (18) | −0.0143 (19) | 0.022 (2) |
C24 | 0.049 (2) | 0.087 (3) | 0.086 (3) | 0.0041 (19) | −0.0024 (19) | 0.008 (2) |
C25 | 0.054 (2) | 0.077 (2) | 0.063 (2) | 0.0012 (18) | 0.0042 (17) | 0.0065 (18) |
C26 | 0.058 (2) | 0.058 (2) | 0.0521 (19) | −0.0079 (17) | 0.0031 (15) | 0.0050 (16) |
C27 | 0.063 (2) | 0.082 (3) | 0.091 (3) | −0.016 (2) | 0.009 (2) | −0.016 (2) |
C28 | 0.066 (3) | 0.111 (4) | 0.119 (4) | −0.026 (3) | 0.008 (3) | −0.014 (3) |
C29 | 0.069 (3) | 0.112 (4) | 0.100 (3) | −0.008 (3) | 0.028 (2) | 0.000 (3) |
C30 | 0.080 (3) | 0.101 (3) | 0.080 (3) | −0.006 (3) | 0.023 (2) | −0.022 (2) |
C31 | 0.064 (2) | 0.085 (3) | 0.060 (2) | −0.010 (2) | 0.0076 (18) | −0.010 (2) |
C32 | 0.141 (5) | 0.107 (4) | 0.071 (3) | −0.015 (3) | 0.002 (3) | −0.039 (3) |
C33 | 0.118 (4) | 0.111 (4) | 0.053 (2) | 0.005 (3) | −0.004 (3) | −0.016 (3) |
C34 | 0.138 (5) | 0.175 (7) | 0.094 (4) | 0.021 (5) | 0.004 (4) | −0.004 (4) |
C35 | 0.111 (6) | 0.358 (17) | 0.116 (6) | −0.002 (8) | 0.022 (4) | 0.019 (9) |
C36 | 0.222 (12) | 0.281 (17) | 0.090 (6) | −0.079 (11) | −0.007 (6) | 0.065 (8) |
C37 | 0.296 (15) | 0.192 (10) | 0.102 (6) | −0.072 (10) | −0.037 (7) | 0.038 (6) |
C38 | 0.171 (6) | 0.104 (5) | 0.087 (4) | −0.008 (4) | −0.010 (4) | 0.011 (3) |
C39 | 0.116 (4) | 0.124 (5) | 0.086 (4) | 0.021 (3) | 0.013 (3) | −0.010 (3) |
C40 | 0.314 (12) | 0.155 (7) | 0.170 (7) | 0.005 (7) | −0.010 (7) | −0.062 (6) |
C41 | 0.126 (5) | 0.164 (6) | 0.138 (5) | 0.017 (4) | 0.038 (4) | 0.031 (5) |
N1 | 0.0511 (16) | 0.0626 (18) | 0.0465 (16) | −0.0030 (13) | 0.0039 (13) | 0.0057 (14) |
N2 | 0.0484 (16) | 0.0447 (17) | 0.0623 (17) | 0.0005 (13) | 0.0006 (12) | 0.0088 (13) |
N3 | 0.090 (2) | 0.072 (2) | 0.0593 (18) | −0.0117 (18) | −0.0146 (17) | 0.0008 (16) |
O1 | 0.0775 (19) | 0.116 (2) | 0.0848 (19) | −0.0107 (17) | 0.0013 (15) | −0.0291 (17) |
O2 | 0.234 (5) | 0.156 (4) | 0.087 (3) | 0.043 (4) | 0.015 (3) | 0.002 (3) |
Cl1 | 0.0746 (7) | 0.1043 (8) | 0.0801 (7) | −0.0127 (6) | −0.0181 (5) | 0.0094 (6) |
Cl2 | 0.0633 (7) | 0.1634 (14) | 0.1442 (12) | −0.0164 (8) | 0.0286 (7) | 0.0234 (10) |
Cl3 | 0.0765 (8) | 0.1344 (11) | 0.1236 (10) | 0.0078 (7) | −0.0308 (7) | 0.0487 (8) |
Cl4 | 0.0784 (9) | 0.1845 (17) | 0.2077 (18) | −0.0109 (10) | 0.0618 (10) | −0.0301 (14) |
C1—N1 | 1.454 (4) | C21—H21 | 0.9300 |
C1—C8 | 1.517 (4) | C22—C23 | 1.358 (5) |
C1—C2 | 1.557 (4) | C22—H22 | 0.9300 |
C1—H1 | 1.02 (3) | C23—C24 | 1.358 (5) |
C2—C7 | 1.482 (4) | C23—Cl3 | 1.746 (3) |
C2—C3 | 1.562 (4) | C24—C25 | 1.385 (5) |
C2—H2 | 0.9800 | C24—H24 | 0.9300 |
C3—N2 | 1.465 (4) | C25—H25 | 0.9300 |
C3—C14 | 1.516 (4) | C26—C27 | 1.373 (5) |
C3—H3 | 1.00 (3) | C26—C31 | 1.383 (5) |
C4—N2 | 1.463 (4) | C27—C28 | 1.368 (6) |
C4—C20 | 1.513 (4) | C27—H27 | 0.9300 |
C4—C5 | 1.558 (4) | C28—C29 | 1.375 (6) |
C4—H4 | 0.98 (3) | C28—H28 | 0.9300 |
C5—C7 | 1.488 (4) | C29—C30 | 1.354 (6) |
C5—C6 | 1.553 (4) | C29—Cl4 | 1.750 (4) |
C5—H5 | 0.9800 | C30—C31 | 1.360 (5) |
C6—N1 | 1.454 (4) | C30—H30 | 0.9300 |
C6—C26 | 1.510 (5) | C31—H31 | 0.9300 |
C6—H6 | 0.97 (3) | C32—O1 | 1.454 (5) |
C7—N3 | 1.292 (4) | C32—C33 | 1.508 (7) |
C8—C9 | 1.382 (4) | C32—H32A | 0.9700 |
C8—C13 | 1.391 (4) | C32—H32B | 0.9700 |
C9—C10 | 1.393 (5) | C33—C38 | 1.334 (7) |
C9—H9 | 0.9300 | C33—C34 | 1.371 (8) |
C10—C11 | 1.369 (5) | C34—C35 | 1.363 (11) |
C10—H10 | 0.9300 | C34—H34 | 0.9300 |
C11—C12 | 1.366 (5) | C35—C36 | 1.353 (15) |
C11—Cl1 | 1.744 (4) | C35—H35 | 0.9300 |
C12—C13 | 1.369 (5) | C36—C37 | 1.410 (14) |
C12—H12 | 0.9300 | C36—H36 | 0.9300 |
C13—H13 | 0.9300 | C37—C38 | 1.418 (11) |
C14—C15 | 1.379 (4) | C37—H37 | 0.9300 |
C14—C19 | 1.386 (5) | C38—H38 | 0.9300 |
C15—C16 | 1.386 (5) | C39—O2 | 1.173 (6) |
C15—H15 | 0.9300 | C39—C40 | 1.441 (9) |
C16—C17 | 1.363 (5) | C39—C41 | 1.509 (8) |
C16—H16 | 0.9300 | C40—H40A | 0.9600 |
C17—C18 | 1.364 (5) | C40—H40B | 0.9600 |
C17—Cl2 | 1.743 (4) | C40—H40C | 0.9600 |
C18—C19 | 1.382 (5) | C41—H41A | 0.9600 |
C18—H18 | 0.9300 | C41—H41B | 0.9600 |
C19—H19 | 0.9300 | C41—H41C | 0.9600 |
C20—C25 | 1.382 (5) | N1—H1A | 0.86 (3) |
C20—C21 | 1.383 (5) | N2—H2A | 0.88 (4) |
C21—C22 | 1.381 (5) | N3—O1 | 1.380 (4) |
N1—C1—C8 | 111.7 (3) | C22—C21—H21 | 119.5 |
N1—C1—C2 | 108.5 (3) | C20—C21—H21 | 119.5 |
C8—C1—C2 | 111.0 (3) | C23—C22—C21 | 119.3 (3) |
N1—C1—H1 | 108.4 (18) | C23—C22—H22 | 120.4 |
C8—C1—H1 | 110.1 (18) | C21—C22—H22 | 120.4 |
C2—C1—H1 | 106.9 (18) | C24—C23—C22 | 121.5 (3) |
C7—C2—C1 | 108.3 (3) | C24—C23—Cl3 | 119.9 (3) |
C7—C2—C3 | 107.1 (2) | C22—C23—Cl3 | 118.5 (3) |
C1—C2—C3 | 112.8 (3) | C23—C24—C25 | 119.3 (4) |
C7—C2—H2 | 109.5 | C23—C24—H24 | 120.4 |
C1—C2—H2 | 109.5 | C25—C24—H24 | 120.4 |
C3—C2—H2 | 109.5 | C20—C25—C24 | 120.8 (3) |
N2—C3—C14 | 109.7 (3) | C20—C25—H25 | 119.6 |
N2—C3—C2 | 109.1 (3) | C24—C25—H25 | 119.6 |
C14—C3—C2 | 109.8 (3) | C27—C26—C31 | 117.8 (3) |
N2—C3—H3 | 112.2 (17) | C27—C26—C6 | 119.1 (3) |
C14—C3—H3 | 108.4 (17) | C31—C26—C6 | 123.1 (3) |
C2—C3—H3 | 107.7 (17) | C28—C27—C26 | 121.1 (4) |
N2—C4—C20 | 109.8 (3) | C28—C27—H27 | 119.5 |
N2—C4—C5 | 108.3 (3) | C26—C27—H27 | 119.5 |
C20—C4—C5 | 110.9 (3) | C27—C28—C29 | 119.3 (4) |
N2—C4—H4 | 112.1 (17) | C27—C28—H28 | 120.3 |
C20—C4—H4 | 108.2 (16) | C29—C28—H28 | 120.3 |
C5—C4—H4 | 107.6 (17) | C30—C29—C28 | 120.7 (4) |
C7—C5—C6 | 106.4 (3) | C30—C29—Cl4 | 119.9 (4) |
C7—C5—C4 | 108.1 (3) | C28—C29—Cl4 | 119.4 (4) |
C6—C5—C4 | 112.3 (3) | C29—C30—C31 | 119.5 (4) |
C7—C5—H5 | 110.0 | C29—C30—H30 | 120.3 |
C6—C5—H5 | 110.0 | C31—C30—H30 | 120.3 |
C4—C5—H5 | 110.0 | C30—C31—C26 | 121.6 (4) |
N1—C6—C26 | 111.5 (3) | C30—C31—H31 | 119.2 |
N1—C6—C5 | 108.1 (3) | C26—C31—H31 | 119.2 |
C26—C6—C5 | 112.2 (3) | O1—C32—C33 | 112.7 (4) |
N1—C6—H6 | 111.3 (18) | O1—C32—H32A | 109.0 |
C26—C6—H6 | 106.9 (18) | C33—C32—H32A | 109.0 |
C5—C6—H6 | 106.8 (18) | O1—C32—H32B | 109.0 |
N3—C7—C2 | 117.4 (3) | C33—C32—H32B | 109.0 |
N3—C7—C5 | 129.8 (3) | H32A—C32—H32B | 107.8 |
C2—C7—C5 | 112.8 (3) | C38—C33—C34 | 120.7 (6) |
C9—C8—C13 | 118.1 (3) | C38—C33—C32 | 122.4 (6) |
C9—C8—C1 | 122.4 (3) | C34—C33—C32 | 116.8 (6) |
C13—C8—C1 | 119.4 (3) | C35—C34—C33 | 119.9 (9) |
C8—C9—C10 | 121.2 (3) | C35—C34—H34 | 120.1 |
C8—C9—H9 | 119.4 | C33—C34—H34 | 120.1 |
C10—C9—H9 | 119.4 | C36—C35—C34 | 121.9 (11) |
C11—C10—C9 | 118.6 (3) | C36—C35—H35 | 119.1 |
C11—C10—H10 | 120.7 | C34—C35—H35 | 119.1 |
C9—C10—H10 | 120.7 | C35—C36—C37 | 118.9 (12) |
C12—C11—C10 | 121.3 (3) | C35—C36—H36 | 120.5 |
C12—C11—Cl1 | 119.8 (3) | C37—C36—H36 | 120.5 |
C10—C11—Cl1 | 118.9 (3) | C36—C37—C38 | 118.0 (11) |
C11—C12—C13 | 119.8 (3) | C36—C37—H37 | 121.0 |
C11—C12—H12 | 120.1 | C38—C37—H37 | 121.0 |
C13—C12—H12 | 120.1 | C33—C38—C37 | 120.6 (8) |
C12—C13—C8 | 120.9 (3) | C33—C38—H38 | 119.7 |
C12—C13—H13 | 119.5 | C37—C38—H38 | 119.7 |
C8—C13—H13 | 119.5 | O2—C39—C40 | 121.1 (7) |
C15—C14—C19 | 117.6 (3) | O2—C39—C41 | 120.1 (6) |
C15—C14—C3 | 121.2 (3) | C40—C39—C41 | 118.8 (6) |
C19—C14—C3 | 121.1 (3) | C39—C40—H40A | 109.5 |
C14—C15—C16 | 121.7 (3) | C39—C40—H40B | 109.5 |
C14—C15—H15 | 119.1 | H40A—C40—H40B | 109.5 |
C16—C15—H15 | 119.1 | C39—C40—H40C | 109.5 |
C17—C16—C15 | 118.9 (3) | H40A—C40—H40C | 109.5 |
C17—C16—H16 | 120.5 | H40B—C40—H40C | 109.5 |
C15—C16—H16 | 120.5 | C39—C41—H41A | 109.5 |
C16—C17—C18 | 121.1 (4) | C39—C41—H41B | 109.5 |
C16—C17—Cl2 | 119.5 (3) | H41A—C41—H41B | 109.5 |
C18—C17—Cl2 | 119.4 (3) | C39—C41—H41C | 109.5 |
C17—C18—C19 | 119.6 (4) | H41A—C41—H41C | 109.5 |
C17—C18—H18 | 120.2 | H41B—C41—H41C | 109.5 |
C19—C18—H18 | 120.2 | C1—N1—C6 | 113.5 (3) |
C18—C19—C14 | 121.0 (3) | C1—N1—H1A | 112 (2) |
C18—C19—H19 | 119.5 | C6—N1—H1A | 107 (2) |
C14—C19—H19 | 119.5 | C4—N2—C3 | 114.9 (3) |
C25—C20—C21 | 118.2 (3) | C4—N2—H2A | 109 (2) |
C25—C20—C4 | 120.9 (3) | C3—N2—H2A | 109 (2) |
C21—C20—C4 | 120.8 (3) | C7—N3—O1 | 110.0 (3) |
C22—C21—C20 | 120.9 (3) | N3—O1—C32 | 106.9 (3) |
N1—C1—C2—C7 | 55.2 (3) | C3—C14—C19—C18 | 177.2 (4) |
C8—C1—C2—C7 | 178.4 (3) | N2—C4—C20—C25 | 146.8 (3) |
N1—C1—C2—C3 | −63.2 (3) | C5—C4—C20—C25 | −93.6 (4) |
C8—C1—C2—C3 | 60.0 (3) | N2—C4—C20—C21 | −36.6 (4) |
C7—C2—C3—N2 | −4.7 (3) | C5—C4—C20—C21 | 83.0 (4) |
C1—C2—C3—N2 | 114.4 (3) | C25—C20—C21—C22 | 1.0 (5) |
C7—C2—C3—C14 | 115.5 (3) | C4—C20—C21—C22 | −175.6 (3) |
C1—C2—C3—C14 | −125.4 (3) | C20—C21—C22—C23 | −1.5 (6) |
N2—C4—C5—C7 | −1.1 (3) | C21—C22—C23—C24 | 0.7 (6) |
C20—C4—C5—C7 | −121.6 (3) | C21—C22—C23—Cl3 | 179.2 (3) |
N2—C4—C5—C6 | −118.2 (3) | C22—C23—C24—C25 | 0.4 (6) |
C20—C4—C5—C6 | 121.4 (3) | Cl3—C23—C24—C25 | −178.0 (3) |
C7—C5—C6—N1 | −59.7 (3) | C21—C20—C25—C24 | 0.1 (5) |
C4—C5—C6—N1 | 58.4 (3) | C4—C20—C25—C24 | 176.8 (3) |
C7—C5—C6—C26 | 177.0 (3) | C23—C24—C25—C20 | −0.9 (6) |
C4—C5—C6—C26 | −65.0 (4) | N1—C6—C26—C27 | 161.1 (3) |
C1—C2—C7—N3 | 122.5 (3) | C5—C6—C26—C27 | −77.5 (4) |
C3—C2—C7—N3 | −115.5 (3) | N1—C6—C26—C31 | −19.9 (5) |
C1—C2—C7—C5 | −59.2 (3) | C5—C6—C26—C31 | 101.6 (4) |
C3—C2—C7—C5 | 62.7 (3) | C31—C26—C27—C28 | −0.5 (6) |
C6—C5—C7—N3 | −121.0 (4) | C6—C26—C27—C28 | 178.7 (4) |
C4—C5—C7—N3 | 118.3 (4) | C26—C27—C28—C29 | 0.5 (7) |
C6—C5—C7—C2 | 61.1 (3) | C27—C28—C29—C30 | −0.5 (8) |
C4—C5—C7—C2 | −59.7 (3) | C27—C28—C29—Cl4 | 179.7 (4) |
N1—C1—C8—C9 | 10.8 (4) | C28—C29—C30—C31 | 0.6 (8) |
C2—C1—C8—C9 | −110.5 (3) | Cl4—C29—C30—C31 | −179.7 (4) |
N1—C1—C8—C13 | −172.1 (3) | C29—C30—C31—C26 | −0.7 (7) |
C2—C1—C8—C13 | 66.6 (4) | C27—C26—C31—C30 | 0.6 (6) |
C13—C8—C9—C10 | −0.7 (5) | C6—C26—C31—C30 | −178.5 (4) |
C1—C8—C9—C10 | 176.4 (3) | O1—C32—C33—C38 | 35.3 (7) |
C8—C9—C10—C11 | −0.6 (5) | O1—C32—C33—C34 | −147.2 (5) |
C9—C10—C11—C12 | 1.5 (5) | C38—C33—C34—C35 | −2.5 (9) |
C9—C10—C11—Cl1 | −177.7 (3) | C32—C33—C34—C35 | 179.9 (6) |
C10—C11—C12—C13 | −1.0 (5) | C33—C34—C35—C36 | 1.2 (13) |
Cl1—C11—C12—C13 | 178.2 (3) | C34—C35—C36—C37 | −0.6 (16) |
C11—C12—C13—C8 | −0.4 (5) | C35—C36—C37—C38 | 1.1 (15) |
C9—C8—C13—C12 | 1.2 (5) | C34—C33—C38—C37 | 3.2 (9) |
C1—C8—C13—C12 | −176.0 (3) | C32—C33—C38—C37 | −179.4 (5) |
N2—C3—C14—C15 | −151.8 (3) | C36—C37—C38—C33 | −2.5 (12) |
C2—C3—C14—C15 | 88.3 (4) | C8—C1—N1—C6 | 177.3 (3) |
N2—C3—C14—C19 | 31.7 (4) | C2—C1—N1—C6 | −60.0 (3) |
C2—C3—C14—C19 | −88.1 (4) | C26—C6—N1—C1 | −173.5 (3) |
C19—C14—C15—C16 | −0.1 (5) | C5—C6—N1—C1 | 62.8 (4) |
C3—C14—C15—C16 | −176.7 (3) | C20—C4—N2—C3 | −179.0 (3) |
C14—C15—C16—C17 | −1.1 (6) | C5—C4—N2—C3 | 59.8 (3) |
C15—C16—C17—C18 | 1.7 (6) | C14—C3—N2—C4 | −176.9 (3) |
C15—C16—C17—Cl2 | −179.8 (3) | C2—C3—N2—C4 | −56.6 (4) |
C16—C17—C18—C19 | −1.2 (7) | C2—C7—N3—O1 | 174.4 (3) |
Cl2—C17—C18—C19 | −179.7 (3) | C5—C7—N3—O1 | −3.5 (5) |
C17—C18—C19—C14 | 0.0 (7) | C7—N3—O1—C32 | 178.8 (3) |
C15—C14—C19—C18 | 0.7 (6) | C33—C32—O1—N3 | 63.3 (5) |
Cg3 is the centroid of the C8–C13 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C13—H13···O2 | 0.93 | 2.52 | 3.441 (6) | 172 |
N2—H2A···Cg3i | 0.88 (3) | 2.85 (3) | 3.637 (3) | 150 (3) |
Symmetry code: (i) −x+1/2, y+3/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C38H31Cl4N3O·C3H6O |
Mr | 745.54 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 14.9237 (5), 10.5064 (3), 24.6015 (7) |
β (°) | 93.116 (1) |
V (Å3) | 3851.7 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.35 |
Crystal size (mm) | 0.20 × 0.16 × 0.16 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2004) |
Tmin, Tmax | 0.934, 0.947 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 35931, 7173, 4263 |
Rint | 0.040 |
(sin θ/λ)max (Å−1) | 0.606 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.062, 0.188, 1.03 |
No. of reflections | 7173 |
No. of parameters | 475 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.89, −0.29 |
Computer programs: APEX2 (Bruker, 2004), SAINT-Plus (Bruker, 2004), SIR92 (Altomare et al., 1993), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997).
Cg3 is the centroid of the C8–C13 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C13—H13···O2 | 0.93 | 2.52 | 3.441 (6) | 172 |
N2—H2A···Cg3i | 0.88 (3) | 2.85 (3) | 3.637 (3) | 150 (3) |
Symmetry code: (i) −x+1/2, y+3/2, −z+1/2. |
Acknowledgements
This research was supported by the National Research Foundation (NRF) of Korea.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The 3,7-diazabicyclo[3.3.1] nonan-9-one nucleus is widely present in Lupin alkaloids and are displaying various biological actions (Parthiban et al., 2009, 2010, Asakawa, 1995, Jayaraman & Avila, 1981). In fact, the biological activities mainly depends on the nature of the substituents and their positions on the nucleus. Since C=N—O-R is an important class of pharmacophore by displaying biological actions, we have synthesized the title molcule by the condensation of 3,7-diazabicyclo[3.3.1]nonan-9-one and O-benzyl moiety to make the biologically potent oxime derivative. Because the biological actions mainly depend on the stereochemistry of the molecule, we undertaken the title molecule for the present study to explore its stereochemistry.
The crystallographic parameters viz., torsion angles, asymmetry parameters and ring puckering parameters calculated for the title compound shows that one of the piperidone rings, N(1)—C(1)—C(2)—C(7)—C(5)—C(6) adopts a near ideal chair conformation, according to Cremer & Pople and Nardelli. The total puckering amplitude, QT is 0.606 (3) Å, the phase angle θ is 2.7 (3)° and phi is 261 (6)° (Cremer & Pople, 1975). The smallest displacement asymmetry parameters q2 and q3 are 0.031 (3) and 0.605 (3) Å, respectively (Nardelli, 1983). On the otherhand, another piperidone ring N(2)—C(3)—C(2)—C(7)—C(5)—C(4) exists in the boat conformation according to C&P by QT = 0.764 (3), θ = 91.9 (2)° and phi = 357.0 (3)° as well as Nardelli by q2 = 0.764 (3) and q3 = -0.025 (3)°.
An equatorial orientation of the 4-chlorophenyl groups attached on the chair form piperidone is supported by the angles of C(1)—C(8) and C(6)—C(26) on the C&P plane normal as 70.85 (19) and 75.04 (19)°, respectively (Luger & Bülow, 1983). The equatorial orientations of the aryl groups are further supported by thier torsion angles; the C8—C1—C2—C7 is 178.4 (3)° and C26—C6—C5—C7 is 177.0 (3)°. The 4-chlorophenyl groups attached on the boat form of the piperidone have angles with C&P plane normal are C(3)—C(14) = 57.34 (19)° and C(4)—C(20) = 61.70 (19)°, they are respectively in bisectional and equatorial orientations according to Luger & Bulow. In fact, both lies on the boundary of bisectional and this is further supported by their torsion angles as follows: C7—C2—C3—C14 = 115.5 (3)° and C20—C4—C5—C7 = -121.6 (3)°.
The 4-chlorophenyl groups attached on the chair form are equatorially oriented at an angle of 18.15°, respect to each other, whereas, the 4-chlorophenyl groups attached to the boat form are oriented at an angle of 32.64° between them.
Based on the above analysis, it is clear that the title compound exists in the chair-boat conformation with an equatorial orientation of the 4-chlorophenyl groups on both sides of the secondary amino group of the piperidone in the chair conformation.
The crystal packing is stabilized by weak intermolecular N—H···π (C14—C19) and C—H···O interactions.