metal-organic compounds
Di-μ-bromido-bis({2-[(4,6-dimethylpyrimidin-2-yl)disulfanyl]-4,6-dimethylpyrimidine-κ2N1,S2}copper(I))
aDepartment of Chemistry and Center for Innovation in Chemistry, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand, and bDepartment of Chemistry, Faculty of Science, Prince of Songkla University, Hat Yai 90112, Thailand
*Correspondence e-mail: chaveng.p@psu.ac.th
The title dinuclear complex, [Cu2Br2(C12H14N4S2)2], is located about an inversion center. The CuI ion is coordinated in a distorted tetrahedral geometry by two bridging Br atoms in addition to an N and an S atom from the 2-[(4,6-dimethylpyrimidin-2-yl)disulfanyl]-4,6-dimethylpyrimidine ligand. In the crystal, π–π stacking interactions are observed with a centroid–centroid distance of 3.590 (2) Å.
Related literature
For potential applications of heterocyclic thioamides and their metal complexes, see: Battistuzzi & Peyronel (1981); Holm & Solomon (1996); Cox et al. (2006); Falcomer et al. (2006); Sevier & Kaiser (2006); Saxena et al. (2009). For related structures, see: Lemos et al. (2001); Aslanidis et al. (2004); Freeman et al. (2008).
Experimental
Crystal data
|
Data collection: SMART (Bruker, 1998); cell SAINT (Bruker, 2003); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536812016315/lh5449sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812016315/lh5449Isup2.hkl
4,6-Dimethyl-2-pyrimidinethiol, dmpymtH, (0.07 g, 0.50 mmol) was dissolved in 30 cm3 of methanol at 343-348K. CuBr (0.1 g, 0.70 mmol) was added and the mixture was stirred for 5 h. The resulting clear solution was filtered off and left to evaporate at room temperature. The crystalline complex, which was deposited upon standing for several days, was filtered off and dried in vacuo (yield 75%).
The H atoms bonded to C atoms were constrained with a riding model of C—H = 0.93–0.96 Å and with Uiso(H) = 1.2Ueq(C). The DELU instruction in SHELXL (Sheldrick, 2008) was used without any further parameters. This sets up 'rigid bond' restraints for all non-hydrogen atom. The dafault standard deviation values are 0.01 and 0.01. This appears to have little effect but it does affect the no of restraints (55) listed in the CIF.
Data collection: SMART (Bruker, 1998); cell
SAINT (Bruker, 2003); data reduction: SAINT (Bruker, 2003); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and publCIF (Westrip, 2010).[Cu2Br2(C12H14N4S2)2] | F(000) = 1680 |
Mr = 843.68 | Dx = 1.753 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 16645 reflections |
a = 15.3351 (7) Å | θ = 1.9–24.7° |
b = 15.3898 (7) Å | µ = 4.12 mm−1 |
c = 14.3398 (7) Å | T = 293 K |
β = 109.178 (1)° | Plate, colorless |
V = 3196.4 (3) Å3 | 0.21 × 0.18 × 0.10 mm |
Z = 4 |
Bruker SMART CCD diffractometer | 2732 independent reflections |
Radiation source: fine-focus sealed tube | 2344 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
ϕ and ω scans | θmax = 24.7°, θmin = 1.9° |
Absorption correction: integration (SADABS; Bruker, 2003) | h = −18→18 |
Tmin = 0.425, Tmax = 0.662 | k = −18→17 |
12339 measured reflections | l = −16→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.028 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.077 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0412P)2 + 3.1838P] where P = (Fo2 + 2Fc2)/3 |
2732 reflections | (Δ/σ)max = 0.001 |
181 parameters | Δρmax = 0.37 e Å−3 |
55 restraints | Δρmin = −0.31 e Å−3 |
[Cu2Br2(C12H14N4S2)2] | V = 3196.4 (3) Å3 |
Mr = 843.68 | Z = 4 |
Monoclinic, C2/c | Mo Kα radiation |
a = 15.3351 (7) Å | µ = 4.12 mm−1 |
b = 15.3898 (7) Å | T = 293 K |
c = 14.3398 (7) Å | 0.21 × 0.18 × 0.10 mm |
β = 109.178 (1)° |
Bruker SMART CCD diffractometer | 2732 independent reflections |
Absorption correction: integration (SADABS; Bruker, 2003) | 2344 reflections with I > 2σ(I) |
Tmin = 0.425, Tmax = 0.662 | Rint = 0.024 |
12339 measured reflections |
R[F2 > 2σ(F2)] = 0.028 | 55 restraints |
wR(F2) = 0.077 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.37 e Å−3 |
2732 reflections | Δρmin = −0.31 e Å−3 |
181 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1A | 0.12116 (19) | 0.06625 (19) | 0.6388 (2) | 0.0437 (7) | |
C2A | 0.0939 (2) | −0.0746 (2) | 0.5935 (3) | 0.0541 (8) | |
C3A | 0.1153 (2) | −0.0561 (2) | 0.5100 (3) | 0.0559 (8) | |
H1A | 0.1118 | −0.0994 | 0.4637 | 0.067* | |
C4A | 0.1417 (2) | 0.0265 (2) | 0.4949 (2) | 0.0491 (7) | |
C5A | 0.0690 (3) | −0.1640 (2) | 0.6172 (4) | 0.0806 (12) | |
H2A | 0.0531 | −0.1622 | 0.6766 | 0.097* | |
H4A | 0.1206 | −0.2022 | 0.6264 | 0.097* | |
H3A | 0.0172 | −0.1849 | 0.5637 | 0.097* | |
C6A | 0.1667 (3) | 0.0518 (3) | 0.4062 (3) | 0.0738 (11) | |
H7A | 0.1835 | 0.1121 | 0.4107 | 0.089* | |
H5A | 0.1147 | 0.0423 | 0.3477 | 0.089* | |
H6A | 0.2178 | 0.0173 | 0.4033 | 0.089* | |
C1B | 0.0927 (2) | 0.3281 (2) | 0.6662 (2) | 0.0444 (7) | |
C2B | 0.0657 (2) | 0.4721 (2) | 0.6545 (2) | 0.0535 (8) | |
C3B | −0.0270 (2) | 0.4533 (2) | 0.6114 (2) | 0.0572 (8) | |
H1B | −0.0700 | 0.4979 | 0.5910 | 0.069* | |
C4B | −0.0549 (2) | 0.3680 (2) | 0.5989 (2) | 0.0534 (8) | |
C5B | 0.1020 (3) | 0.5630 (2) | 0.6741 (3) | 0.0741 (11) | |
H2B | 0.1679 | 0.5614 | 0.7044 | 0.089* | |
H4B | 0.0749 | 0.5914 | 0.7174 | 0.089* | |
H3B | 0.0866 | 0.5943 | 0.6129 | 0.089* | |
C6B | −0.1546 (2) | 0.3429 (3) | 0.5541 (3) | 0.0743 (11) | |
H5B | −0.1599 | 0.2807 | 0.5516 | 0.089* | |
H6B | −0.1787 | 0.3661 | 0.4885 | 0.089* | |
H7B | −0.1890 | 0.3658 | 0.5937 | 0.089* | |
Cu1 | 0.20241 (3) | 0.20852 (2) | 0.55473 (3) | 0.05128 (14) | |
N1A | 0.09541 (17) | −0.01146 (17) | 0.65843 (19) | 0.0522 (6) | |
N2A | 0.14596 (16) | 0.09016 (15) | 0.56177 (17) | 0.0420 (5) | |
N1B | 0.12747 (18) | 0.40741 (17) | 0.68337 (19) | 0.0515 (6) | |
N2B | 0.00657 (18) | 0.30262 (16) | 0.62617 (19) | 0.0491 (6) | |
S1A | 0.12183 (7) | 0.14055 (6) | 0.73360 (6) | 0.0591 (2) | |
S1B | 0.18435 (6) | 0.24973 (5) | 0.70698 (6) | 0.0506 (2) | |
Br1 | 0.13259 (2) | 0.31106 (2) | 0.42440 (3) | 0.05795 (13) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1A | 0.0383 (15) | 0.0440 (16) | 0.0466 (16) | 0.0048 (12) | 0.0110 (13) | 0.0077 (13) |
C2A | 0.0375 (17) | 0.0438 (17) | 0.072 (2) | −0.0002 (13) | 0.0056 (15) | 0.0108 (16) |
C3A | 0.0514 (19) | 0.0434 (17) | 0.066 (2) | −0.0011 (14) | 0.0099 (16) | −0.0083 (15) |
C4A | 0.0506 (18) | 0.0460 (17) | 0.0482 (17) | 0.0027 (14) | 0.0127 (14) | −0.0042 (14) |
C5A | 0.070 (3) | 0.049 (2) | 0.113 (3) | −0.0075 (18) | 0.017 (2) | 0.017 (2) |
C6A | 0.107 (3) | 0.062 (2) | 0.063 (2) | −0.011 (2) | 0.042 (2) | −0.0166 (18) |
C1B | 0.0487 (17) | 0.0486 (17) | 0.0411 (16) | 0.0076 (13) | 0.0216 (13) | −0.0017 (13) |
C2B | 0.070 (2) | 0.0468 (18) | 0.0517 (18) | 0.0055 (15) | 0.0303 (16) | −0.0021 (14) |
C3B | 0.060 (2) | 0.0566 (19) | 0.059 (2) | 0.0166 (15) | 0.0256 (16) | 0.0068 (16) |
C4B | 0.0501 (18) | 0.063 (2) | 0.0504 (18) | 0.0081 (15) | 0.0211 (14) | 0.0066 (15) |
C5B | 0.092 (3) | 0.051 (2) | 0.083 (3) | 0.0023 (19) | 0.034 (2) | −0.0080 (19) |
C6B | 0.051 (2) | 0.090 (3) | 0.082 (3) | 0.0056 (19) | 0.0231 (18) | 0.018 (2) |
Cu1 | 0.0570 (3) | 0.0424 (2) | 0.0616 (3) | 0.00037 (16) | 0.0292 (2) | 0.00422 (17) |
N1A | 0.0473 (14) | 0.0483 (15) | 0.0595 (16) | −0.0005 (12) | 0.0157 (12) | 0.0126 (13) |
N2A | 0.0429 (13) | 0.0409 (13) | 0.0426 (13) | −0.0011 (10) | 0.0146 (10) | 0.0018 (10) |
N1B | 0.0565 (16) | 0.0476 (15) | 0.0552 (15) | 0.0014 (12) | 0.0249 (12) | −0.0074 (12) |
N2B | 0.0477 (15) | 0.0521 (15) | 0.0501 (15) | 0.0017 (12) | 0.0197 (12) | 0.0034 (12) |
S1A | 0.0828 (6) | 0.0531 (5) | 0.0510 (5) | 0.0106 (4) | 0.0351 (4) | 0.0078 (4) |
S1B | 0.0495 (4) | 0.0485 (5) | 0.0521 (4) | 0.0070 (3) | 0.0142 (3) | −0.0062 (4) |
Br1 | 0.0467 (2) | 0.0548 (2) | 0.0746 (3) | 0.01020 (14) | 0.02299 (17) | 0.02122 (16) |
C1A—N1A | 1.319 (4) | C2B—C3B | 1.381 (5) |
C1A—N2A | 1.332 (4) | C2B—C5B | 1.498 (5) |
C1A—S1A | 1.774 (3) | C3B—C4B | 1.375 (5) |
C2A—N1A | 1.341 (4) | C3B—H1B | 0.9300 |
C2A—C3A | 1.371 (5) | C4B—N2B | 1.346 (4) |
C2A—C5A | 1.496 (4) | C4B—C6B | 1.501 (5) |
C3A—C4A | 1.372 (4) | C5B—H2B | 0.9600 |
C3A—H1A | 0.9300 | C5B—H4B | 0.9600 |
C4A—N2A | 1.358 (4) | C5B—H3B | 0.9600 |
C4A—C6A | 1.495 (5) | C6B—H5B | 0.9600 |
C5A—H2A | 0.9600 | C6B—H6B | 0.9600 |
C5A—H4A | 0.9600 | C6B—H7B | 0.9600 |
C5A—H3A | 0.9600 | Cu1—N2A | 2.033 (2) |
C6A—H7A | 0.9600 | Cu1—S1B | 2.3754 (9) |
C6A—H5A | 0.9600 | Cu1—Br1 | 2.4114 (5) |
C6A—H6A | 0.9600 | Cu1—Br1i | 2.4669 (5) |
C1B—N2B | 1.315 (4) | Cu1—Cu1i | 2.7801 (7) |
C1B—N1B | 1.323 (4) | S1A—S1B | 2.0318 (13) |
C1B—S1B | 1.798 (3) | Br1—Cu1i | 2.4668 (5) |
C2B—N1B | 1.342 (4) | ||
N1A—C1A—N2A | 127.9 (3) | C3B—C4B—C6B | 122.1 (3) |
N1A—C1A—S1A | 110.3 (2) | C2B—C5B—H2B | 109.5 |
N2A—C1A—S1A | 121.7 (2) | C2B—C5B—H4B | 109.5 |
N1A—C2A—C3A | 120.0 (3) | H2B—C5B—H4B | 109.5 |
N1A—C2A—C5A | 117.2 (3) | C2B—C5B—H3B | 109.5 |
C3A—C2A—C5A | 122.8 (3) | H2B—C5B—H3B | 109.5 |
C2A—C3A—C4A | 119.9 (3) | H4B—C5B—H3B | 109.5 |
C2A—C3A—H1A | 120.0 | C4B—C6B—H5B | 109.5 |
C4A—C3A—H1A | 120.0 | C4B—C6B—H6B | 109.5 |
N2A—C4A—C3A | 120.3 (3) | H5B—C6B—H6B | 109.5 |
N2A—C4A—C6A | 116.5 (3) | C4B—C6B—H7B | 109.5 |
C3A—C4A—C6A | 123.2 (3) | H5B—C6B—H7B | 109.5 |
C2A—C5A—H2A | 109.5 | H6B—C6B—H7B | 109.5 |
C2A—C5A—H4A | 109.5 | N2A—Cu1—S1B | 90.77 (7) |
H2A—C5A—H4A | 109.5 | N2A—Cu1—Br1 | 122.47 (7) |
C2A—C5A—H3A | 109.5 | S1B—Cu1—Br1 | 112.43 (3) |
H2A—C5A—H3A | 109.5 | N2A—Cu1—Br1i | 108.72 (7) |
H4A—C5A—H3A | 109.5 | S1B—Cu1—Br1i | 110.22 (3) |
C4A—C6A—H7A | 109.5 | Br1—Cu1—Br1i | 110.523 (16) |
C4A—C6A—H5A | 109.5 | N2A—Cu1—Cu1i | 138.63 (7) |
H7A—C6A—H5A | 109.5 | S1B—Cu1—Cu1i | 129.62 (3) |
C4A—C6A—H6A | 109.5 | Br1—Cu1—Cu1i | 56.200 (16) |
H7A—C6A—H6A | 109.5 | Br1i—Cu1—Cu1i | 54.323 (15) |
H5A—C6A—H6A | 109.5 | C1A—N1A—C2A | 116.6 (3) |
N2B—C1B—N1B | 129.9 (3) | C1A—N2A—C4A | 115.2 (3) |
N2B—C1B—S1B | 120.5 (2) | C1A—N2A—Cu1 | 122.05 (19) |
N1B—C1B—S1B | 109.5 (2) | C4A—N2A—Cu1 | 122.3 (2) |
N1B—C2B—C3B | 120.1 (3) | C1B—N1B—C2B | 115.2 (3) |
N1B—C2B—C5B | 116.9 (3) | C1B—N2B—C4B | 114.3 (3) |
C3B—C2B—C5B | 123.0 (3) | C1A—S1A—S1B | 105.86 (11) |
C4B—C3B—C2B | 119.3 (3) | C1B—S1B—S1A | 104.42 (11) |
C4B—C3B—H1B | 120.4 | C1B—S1B—Cu1 | 101.24 (10) |
C2B—C3B—H1B | 120.4 | S1A—S1B—Cu1 | 99.01 (4) |
N2B—C4B—C3B | 121.2 (3) | Cu1—Br1—Cu1i | 69.476 (16) |
N2B—C4B—C6B | 116.7 (3) |
Symmetry code: (i) −x+1/2, −y+1/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Cu2Br2(C12H14N4S2)2] |
Mr | 843.68 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 293 |
a, b, c (Å) | 15.3351 (7), 15.3898 (7), 14.3398 (7) |
β (°) | 109.178 (1) |
V (Å3) | 3196.4 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 4.12 |
Crystal size (mm) | 0.21 × 0.18 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART CCD diffractometer |
Absorption correction | Integration (SADABS; Bruker, 2003) |
Tmin, Tmax | 0.425, 0.662 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12339, 2732, 2344 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.588 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.028, 0.077, 1.04 |
No. of reflections | 2732 |
No. of parameters | 181 |
No. of restraints | 55 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.37, −0.31 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 2003), SHELXS97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008) and publCIF (Westrip, 2010).
Acknowledgements
We gratefully acknowledge financial support from the Center for Innovation in Chemistry (PERCH–CIC), the Commission on Higher Education, Ministry of Education, the Department of Chemistry and the Graduate School, Prince of Songkla University.
References
Aslanidis, P., Cox, P. J., Divanidis, S. & Karagiannidis, P. (2004). Inorg. Chim. Acta, 357, 4231–4239. Web of Science CSD CrossRef CAS Google Scholar
Battistuzzi, R. & Peyronel, G. (1981). Can. J. Chem. 59, 591–596. CrossRef CAS Web of Science Google Scholar
Bruker (1998). SMART. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Bruker (2003). SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Cox, P. J., Kaltzoglou, A. & Aslanidis, P. (2006). Inorg. Chim. Acta, 359, 3183–3190. Web of Science CSD CrossRef CAS Google Scholar
Falcomer, V. A. S., Lemos, S. S., Batista, A. A., Ellena, A. & Castellano, E. E. (2006). Inorg. Chim. Acta, 359, 1064–1070. Web of Science CSD CrossRef CAS Google Scholar
Freeman, F., Po, H. N., Ho, T. S. & Wang, X. (2008). J. Phys. Chem. A, 112, 1643–1655. Web of Science CrossRef PubMed CAS Google Scholar
Holm, R. H. & Solomon, E. J. (1996). Chem. Rev. 96, 2239–2341. CrossRef PubMed CAS Web of Science Google Scholar
Lemos, S. S., Camargo, M. A., Cadoso, Z. Z., Deflon, V. M., Försterling, F. H. & Hagenbach, A. (2001). Polyhedron, 20, 849–854. Web of Science CSD CrossRef CAS Google Scholar
Saxena, A., Dugan, E. C., Liaw, J., Dembo, M. D. & Pike, R. D. (2009). Polyhedron, 28, 4017–4031. Web of Science CSD CrossRef CAS Google Scholar
Sevier, C. S. & Kaiser, C. A. (2006). Antioxid. Redox Signal. 8, 797–811. Web of Science CrossRef PubMed CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The studies of cooordination multidentate ligands such as heterocyclic thioamides, in complexes of closed-shell d10 metal ions, have been shown attention from a number of researchers (Saxena et al., 2009; Cox et al., 2006; Falcomer et al., 2006) because of their interesting biochemical properties and presence in active sites of many metalloproteins (Holm & Solomon, 1996; Battistuzzi & Peyronel, 1981). Particularly, the formation of disulfide bonds is an essential step in the folding and assembly of the extracellular domains of many membrane and secreted proteins which are important features of the structure of many proteins (Sevier & Kaiser, 2006).
The molecular structure of the title compound is shown in Fig. 1. The complex is dinuclear in which the CuI ions adopt distorted tetrahedral geometries. There is a binuclear µ,µ'-dibromobridged CuBr2Cu core. The Cu—S and Cu—N distances are similar to those reported for other thioamide containing complexes (Aslanidis et al., 2004; Lemos et al., 2001) and the disulfide bond distances is shorter than that reported in a related compound with a disulfide bond (Freeman et al., 2008). The 'bite' angle S—Cu—N angle is 90.77 (7)°. The molecule lies on a crystallographic inversion center which is at the center of the CuBr2Cu core with a Cu···Cu separation of 2.7802 (7) Å. This value is close the sum of the van der Waals radii for two Cu atoms (2.8 Å). In the crystal π–π stacking interactions with a centroid to centroid distance of 3.590 (2) Å are observed (Fig. 2). In addition, fairly short C(sp3)—H···N intermolecular distances (H···N = 2.67 Å, C(sp3)—N = 3.41 Å and C(sp3)—H···N = 134.2°) are observed (Fig. 3).