organic compounds
2-[1,1-Dioxo-2-(2,4,5-trifluorobenzyl)-2H-1,2-benzothiazin-4-yl]acetic acid
aDepartment of Applied Chemistry, Beijing Institute of Technology, Zhongguancun South Street, 100081 Beijing, People's Republic of China, and bDepartment of Chemistry and Environmental Engineering, Anyang Institute of Technology, Henan 455000, People's Republic of China
*Correspondence e-mail: zcj@bit.edu.cn
In the title compound, C17H12F3NO4S, the heterocyclic thiazine ring adopts a half-chair conformation with the S and the N atoms displaced by −0.608 (3) and 0.105 (3) Å, respectively, from the mean plane formed by the remaining ring atoms. The dihedral angle between the two benzene rings is 36.63 (8)° and the acetic acid group is inclined at right angles [89.78 (8) °] to the mean plane formed by the C atoms of the thiazine ring. The features O—H⋯O and C—H⋯O hydrogen bonds.
Related literature
For pharmaceuticals properties of benzothiazines, see: Zia-ur-Rehman et al. (2006). For synthetic details of the title compound, see: Chen et al. (2011). For related structures, see: Ahmad et al. (2008); Zia-ur-Rehman et al. (2008).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT-Plus (Bruker, 2001); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536812015942/pv2523sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812015942/pv2523Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812015942/pv2523Isup3.cml
A mixture of methyl 2-(1,1-dioxido-2-(2,4,5-trifluorobenzyl)-2H-benzo[e][1,2] thiazin-4-yl)acetate (0.5 mmol), 1,4-dioxane (5 ml) and saturated aqueous sodium hydroxide (8 ml) was stirred at room temperature for 12 h. The alkaline suspension was adjusted to be acidic with 0.1 M HCl and extracted with ethyl acetate (3 x 30 ml). The combined organic layers were dried over MgSO4 and filtered. Crystals suitable for X-ray diffraction were obtained by slow evaporation of a solution of the title compound in methanol (yield = 69%).
H atom bonded to O1 was located from a different Fourier map and refined freely. The remaining H atoms were positioned geometrically, with C—H = 0.93 and 0.97 Å for aromatic and methylene H, respectively, and constrained to ride on their parent atoms with Uiso(H) = 1.2Ueq(C).
Data collection: APEX2 (Bruker, 2005); cell
SAINT-Plus (Bruker, 2001); data reduction: SAINT-Plus (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C17H12F3NO4S | F(000) = 784 |
Mr = 383.34 | Dx = 1.524 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 9975 reflections |
a = 8.3290 (17) Å | θ = 2.5–28.4° |
b = 23.141 (5) Å | µ = 0.25 mm−1 |
c = 8.6692 (17) Å | T = 293 K |
β = 90.93 (3)° | Block, colorless |
V = 1670.7 (6) Å3 | 0.20 × 0.20 × 0.20 mm |
Z = 4 |
Bruker APEXII CCD diffractometer | 3646 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.023 |
Graphite monochromator | θmax = 28.4°, θmin = 2.5° |
ϕ and ω scans | h = −11→11 |
22476 measured reflections | k = −27→30 |
4158 independent reflections | l = −11→11 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.108 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0536P)2 + 0.5773P] where P = (Fo2 + 2Fc2)/3 |
4158 reflections | (Δ/σ)max < 0.001 |
239 parameters | Δρmax = 0.32 e Å−3 |
0 restraints | Δρmin = −0.40 e Å−3 |
C17H12F3NO4S | V = 1670.7 (6) Å3 |
Mr = 383.34 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 8.3290 (17) Å | µ = 0.25 mm−1 |
b = 23.141 (5) Å | T = 293 K |
c = 8.6692 (17) Å | 0.20 × 0.20 × 0.20 mm |
β = 90.93 (3)° |
Bruker APEXII CCD diffractometer | 3646 reflections with I > 2σ(I) |
22476 measured reflections | Rint = 0.023 |
4158 independent reflections |
R[F2 > 2σ(F2)] = 0.039 | 0 restraints |
wR(F2) = 0.108 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.32 e Å−3 |
4158 reflections | Δρmin = −0.40 e Å−3 |
239 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.11950 (4) | 0.232698 (14) | 0.97865 (4) | 0.03556 (11) | |
F1 | 0.69758 (14) | 0.21289 (5) | 0.89004 (16) | 0.0722 (3) | |
F2 | 0.6328 (2) | 0.02123 (6) | 0.73067 (19) | 0.0989 (5) | |
F3 | 0.3601 (2) | 0.01403 (5) | 0.8862 (2) | 0.0997 (5) | |
O1 | 0.4665 (2) | 0.48147 (7) | 0.79699 (18) | 0.0807 (5) | |
H1 | 0.504 (4) | 0.5074 (14) | 0.855 (3) | 0.107 (10)* | |
O2 | 0.41807 (19) | 0.43626 (6) | 1.01497 (15) | 0.0686 (4) | |
O3 | 0.08188 (15) | 0.19719 (5) | 1.10801 (14) | 0.0526 (3) | |
O4 | 0.08941 (14) | 0.20919 (5) | 0.82864 (12) | 0.0463 (3) | |
N1 | 0.30918 (15) | 0.25127 (5) | 0.99625 (14) | 0.0389 (3) | |
C1 | 0.02950 (17) | 0.30051 (6) | 0.99039 (15) | 0.0348 (3) | |
C2 | −0.11807 (18) | 0.30537 (7) | 1.06150 (18) | 0.0419 (3) | |
H2 | −0.1616 | 0.2741 | 1.1136 | 0.050* | |
C3 | −0.19919 (19) | 0.35725 (8) | 1.0537 (2) | 0.0504 (4) | |
H3 | −0.2977 | 0.3614 | 1.1014 | 0.060* | |
C4 | −0.1331 (2) | 0.40320 (7) | 0.9744 (2) | 0.0525 (4) | |
H4 | −0.1901 | 0.4376 | 0.9658 | 0.063* | |
C5 | 0.0162 (2) | 0.39876 (7) | 0.90794 (19) | 0.0453 (3) | |
H5 | 0.0589 | 0.4304 | 0.8568 | 0.054* | |
C6 | 0.10414 (17) | 0.34714 (6) | 0.91652 (15) | 0.0354 (3) | |
C7 | 0.26885 (18) | 0.34231 (6) | 0.86404 (16) | 0.0379 (3) | |
C8 | 0.36224 (18) | 0.29773 (6) | 0.90869 (17) | 0.0387 (3) | |
H8 | 0.4691 | 0.2980 | 0.8792 | 0.046* | |
C9 | 0.3439 (2) | 0.39103 (6) | 0.77500 (19) | 0.0448 (3) | |
H9A | 0.4296 | 0.3755 | 0.7128 | 0.054* | |
H9B | 0.2636 | 0.4074 | 0.7054 | 0.054* | |
C10 | 0.41079 (18) | 0.43834 (6) | 0.87590 (19) | 0.0433 (3) | |
C11 | 0.4227 (2) | 0.21175 (7) | 1.07534 (18) | 0.0448 (3) | |
H11A | 0.3728 | 0.1972 | 1.1679 | 0.054* | |
H11B | 0.5170 | 0.2336 | 1.1071 | 0.054* | |
C12 | 0.47589 (19) | 0.16095 (7) | 0.97972 (17) | 0.0419 (3) | |
C13 | 0.6136 (2) | 0.16311 (7) | 0.8936 (2) | 0.0480 (4) | |
C14 | 0.6717 (2) | 0.11724 (9) | 0.8094 (2) | 0.0594 (4) | |
H14 | 0.7667 | 0.1200 | 0.7549 | 0.071* | |
C15 | 0.5833 (3) | 0.06758 (8) | 0.8099 (2) | 0.0636 (5) | |
C16 | 0.4443 (3) | 0.06386 (8) | 0.8907 (3) | 0.0635 (5) | |
C17 | 0.3901 (2) | 0.10940 (7) | 0.9768 (2) | 0.0532 (4) | |
H17 | 0.2964 | 0.1058 | 1.0329 | 0.064* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.04325 (19) | 0.02765 (17) | 0.03590 (18) | −0.00299 (12) | 0.00411 (13) | 0.00177 (12) |
F1 | 0.0606 (7) | 0.0529 (6) | 0.1035 (9) | −0.0118 (5) | 0.0109 (6) | −0.0096 (6) |
F2 | 0.1302 (13) | 0.0558 (8) | 0.1110 (11) | 0.0240 (8) | 0.0069 (9) | −0.0322 (7) |
F3 | 0.1114 (11) | 0.0384 (7) | 0.1489 (14) | −0.0155 (7) | −0.0099 (10) | −0.0094 (7) |
O1 | 0.1217 (14) | 0.0547 (9) | 0.0655 (9) | −0.0464 (9) | −0.0027 (9) | 0.0112 (7) |
O2 | 0.0991 (11) | 0.0490 (8) | 0.0580 (8) | −0.0326 (7) | 0.0064 (7) | −0.0001 (6) |
O3 | 0.0639 (7) | 0.0421 (6) | 0.0523 (6) | −0.0011 (5) | 0.0144 (5) | 0.0156 (5) |
O4 | 0.0566 (6) | 0.0365 (6) | 0.0457 (6) | −0.0028 (5) | −0.0032 (5) | −0.0089 (4) |
N1 | 0.0412 (6) | 0.0332 (6) | 0.0424 (6) | −0.0001 (5) | −0.0004 (5) | 0.0018 (5) |
C1 | 0.0411 (7) | 0.0302 (6) | 0.0331 (6) | −0.0014 (5) | 0.0012 (5) | −0.0017 (5) |
C2 | 0.0420 (7) | 0.0416 (8) | 0.0423 (7) | −0.0052 (6) | 0.0048 (6) | 0.0002 (6) |
C3 | 0.0416 (8) | 0.0525 (9) | 0.0573 (9) | 0.0042 (7) | 0.0078 (7) | −0.0013 (7) |
C4 | 0.0495 (9) | 0.0419 (9) | 0.0662 (10) | 0.0100 (7) | 0.0044 (7) | 0.0025 (7) |
C5 | 0.0517 (8) | 0.0329 (7) | 0.0514 (8) | 0.0015 (6) | 0.0044 (7) | 0.0037 (6) |
C6 | 0.0423 (7) | 0.0295 (7) | 0.0344 (6) | −0.0023 (5) | 0.0020 (5) | −0.0015 (5) |
C7 | 0.0459 (7) | 0.0279 (6) | 0.0402 (7) | −0.0049 (5) | 0.0085 (6) | −0.0032 (5) |
C8 | 0.0403 (7) | 0.0327 (7) | 0.0434 (7) | −0.0047 (5) | 0.0063 (6) | −0.0041 (5) |
C9 | 0.0538 (8) | 0.0320 (7) | 0.0491 (8) | −0.0048 (6) | 0.0167 (7) | −0.0006 (6) |
C10 | 0.0424 (7) | 0.0308 (7) | 0.0572 (9) | −0.0036 (6) | 0.0103 (6) | 0.0024 (6) |
C11 | 0.0513 (8) | 0.0433 (8) | 0.0394 (7) | 0.0062 (7) | −0.0103 (6) | −0.0030 (6) |
C12 | 0.0484 (8) | 0.0356 (7) | 0.0413 (7) | 0.0047 (6) | −0.0097 (6) | 0.0019 (6) |
C13 | 0.0512 (8) | 0.0382 (8) | 0.0543 (9) | 0.0021 (6) | −0.0063 (7) | −0.0013 (7) |
C14 | 0.0631 (11) | 0.0552 (11) | 0.0601 (11) | 0.0133 (9) | 0.0033 (8) | −0.0029 (8) |
C15 | 0.0838 (13) | 0.0409 (9) | 0.0659 (11) | 0.0163 (9) | −0.0075 (10) | −0.0110 (8) |
C16 | 0.0782 (13) | 0.0320 (8) | 0.0796 (13) | −0.0022 (8) | −0.0153 (10) | −0.0013 (8) |
C17 | 0.0579 (10) | 0.0395 (8) | 0.0621 (10) | 0.0000 (7) | −0.0032 (8) | 0.0049 (7) |
S1—O4 | 1.4281 (11) | C5—C6 | 1.403 (2) |
S1—O3 | 1.4292 (11) | C5—H5 | 0.9300 |
S1—N1 | 1.6420 (13) | C6—C7 | 1.457 (2) |
S1—C1 | 1.7427 (14) | C7—C8 | 1.345 (2) |
F1—C13 | 1.348 (2) | C7—C9 | 1.5076 (19) |
F2—C15 | 1.342 (2) | C8—H8 | 0.9300 |
F3—C16 | 1.350 (2) | C9—C10 | 1.503 (2) |
O1—C10 | 1.2998 (19) | C9—H9A | 0.9700 |
O1—H1 | 0.84 (3) | C9—H9B | 0.9700 |
O2—C10 | 1.207 (2) | C11—C12 | 1.509 (2) |
N1—C8 | 1.3923 (18) | C11—H11A | 0.9700 |
N1—C11 | 1.4765 (19) | C11—H11B | 0.9700 |
C1—C2 | 1.388 (2) | C12—C13 | 1.379 (2) |
C1—C6 | 1.4049 (19) | C12—C17 | 1.391 (2) |
C2—C3 | 1.379 (2) | C13—C14 | 1.380 (2) |
C2—H2 | 0.9300 | C14—C15 | 1.365 (3) |
C3—C4 | 1.385 (2) | C14—H14 | 0.9300 |
C3—H3 | 0.9300 | C15—C16 | 1.366 (3) |
C4—C5 | 1.383 (2) | C16—C17 | 1.372 (3) |
C4—H4 | 0.9300 | C17—H17 | 0.9300 |
O4—S1—O3 | 117.26 (8) | C10—C9—C7 | 113.55 (13) |
O4—S1—N1 | 109.80 (7) | C10—C9—H9A | 108.9 |
O3—S1—N1 | 107.48 (8) | C7—C9—H9A | 108.9 |
O4—S1—C1 | 109.08 (7) | C10—C9—H9B | 108.9 |
O3—S1—C1 | 111.83 (7) | C7—C9—H9B | 108.9 |
N1—S1—C1 | 99.97 (7) | H9A—C9—H9B | 107.7 |
C10—O1—H1 | 111 (2) | O2—C10—O1 | 122.93 (16) |
C8—N1—C11 | 121.67 (13) | O2—C10—C9 | 124.36 (14) |
C8—N1—S1 | 117.70 (10) | O1—C10—C9 | 112.65 (15) |
C11—N1—S1 | 119.28 (11) | N1—C11—C12 | 114.76 (12) |
C2—C1—C6 | 122.78 (13) | N1—C11—H11A | 108.6 |
C2—C1—S1 | 118.92 (11) | C12—C11—H11A | 108.6 |
C6—C1—S1 | 118.10 (10) | N1—C11—H11B | 108.6 |
C3—C2—C1 | 119.04 (14) | C12—C11—H11B | 108.6 |
C3—C2—H2 | 120.5 | H11A—C11—H11B | 107.6 |
C1—C2—H2 | 120.5 | C13—C12—C17 | 116.91 (15) |
C2—C3—C4 | 119.63 (15) | C13—C12—C11 | 121.54 (14) |
C2—C3—H3 | 120.2 | C17—C12—C11 | 121.54 (15) |
C4—C3—H3 | 120.2 | F1—C13—C12 | 118.65 (15) |
C5—C4—C3 | 121.14 (15) | F1—C13—C14 | 117.28 (16) |
C5—C4—H4 | 119.4 | C12—C13—C14 | 124.07 (16) |
C3—C4—H4 | 119.4 | C15—C14—C13 | 116.87 (18) |
C4—C5—C6 | 120.89 (14) | C15—C14—H14 | 121.6 |
C4—C5—H5 | 119.6 | C13—C14—H14 | 121.6 |
C6—C5—H5 | 119.6 | F2—C15—C14 | 120.1 (2) |
C5—C6—C1 | 116.36 (13) | F2—C15—C16 | 118.81 (19) |
C5—C6—C7 | 122.84 (13) | C14—C15—C16 | 121.11 (17) |
C1—C6—C7 | 120.62 (13) | F3—C16—C15 | 118.92 (19) |
C8—C7—C6 | 120.81 (13) | F3—C16—C17 | 119.8 (2) |
C8—C7—C9 | 118.58 (13) | C15—C16—C17 | 121.31 (17) |
C6—C7—C9 | 120.18 (13) | C16—C17—C12 | 119.69 (18) |
C7—C8—N1 | 124.19 (13) | C16—C17—H17 | 120.2 |
C7—C8—H8 | 117.9 | C12—C17—H17 | 120.2 |
N1—C8—H8 | 117.9 |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O2i | 0.84 (3) | 1.83 (3) | 2.675 (2) | 179 (3) |
C8—H8···O3ii | 0.93 | 2.55 | 3.211 (2) | 129 |
C9—H9A···O3ii | 0.97 | 2.30 | 3.207 (2) | 155 |
C11—H11A···O3 | 0.97 | 2.47 | 2.877 (2) | 105 |
C11—H11B···F1 | 0.97 | 2.47 | 2.818 (2) | 101 |
C11—H11B···O4iii | 0.97 | 2.40 | 3.162 (2) | 135 |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) x+1/2, −y+1/2, z−1/2; (iii) x+1/2, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C17H12F3NO4S |
Mr | 383.34 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 8.3290 (17), 23.141 (5), 8.6692 (17) |
β (°) | 90.93 (3) |
V (Å3) | 1670.7 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.25 |
Crystal size (mm) | 0.20 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 22476, 4158, 3646 |
Rint | 0.023 |
(sin θ/λ)max (Å−1) | 0.669 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.108, 1.03 |
No. of reflections | 4158 |
No. of parameters | 239 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.32, −0.40 |
Computer programs: APEX2 (Bruker, 2005), SAINT-Plus (Bruker, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O2i | 0.84 (3) | 1.83 (3) | 2.675 (2) | 179 (3) |
C8—H8···O3ii | 0.93 | 2.55 | 3.211 (2) | 129 |
C9—H9A···O3ii | 0.97 | 2.30 | 3.207 (2) | 155 |
C11—H11B···O4iii | 0.97 | 2.40 | 3.162 (2) | 135 |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) x+1/2, −y+1/2, z−1/2; (iii) x+1/2, −y+1/2, z+1/2. |
Acknowledgements
This work was supported by the Beijing Natural Science Foundation (No. 7102091) and the Research Fund for the Doctoral Program of Higher Education of China (No. 20111101110042).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Benzothiazine moiety is present as the skeletal structure in several pharmaceuticals such as antibacterial, diuretic, hypoglycemic, antithyroid, and antitumor drugs (Zia-ur-Rehman et al., 2006). In this article, we report the crystal structure of the title compound which has been used as aldose reductase inhibitor (Chen et al., 2011).
In the title compound (Fig. 1), the heterocyclic thiazine ring adopts a half chair conformation with the S1 and the N1 atoms displaced by -0.608 (3) and 0.105 (3) Å, respectively, from the mean plane formed by the remaining ring atoms (C1/C6/C7/C8). The dihedral angle between the two benze rings (C1–C6) and (C12–C17) is 36.63 (8)° and the acetate group (O1/O2/C9/C10) is inclined at right angles (89.78 (8) °) to the mean plane formed by the C-atoms of the thiazine ring. The crystal structure is stabilized by intermolecular O—H···O and C—H···O hydrogen bonds forming a three-dimensional network (Fig. 2).