metal-organic compounds
Bis[μ-1-hexyl-3-(2,3,5,6,8,9,11,12-octahydro-1,4,7,10,13-benzopentaoxacyclopentadecin-15-yl)urea]bis(azidosodium) chloroform disolvate
aInstitut Européen des Membranes, Université de Montpellier II, 34000 Montpellier, France
*Correspondence e-mail: avderlee@univ-montp2.fr
In the title compound, [Na2(N3)2(C21H34N2O6)2]·2CHCl3, the sodium cation is heptacoordinated by five O atoms of the crown ether unit of the 1-hexyl-3-(2,3,5,6,8,9,11,12-octahydro-1,4,7,10,13-benzopentaoxacyclopentadecin-15-yl)urea (L) ligand, the O atom of the urea group of the second, symmetry-related L ligand, and one N atom of the azide anion. The experimentally determined distance 2.472 (2) Å between the terminal azide N atom and the sodium cation is substantially longer than that predicted from density functional theory (DFT) calculations (2.263 Å). The complexing the sodium cation are related by an inversion centre and form dimers. The urea groups of the two L ligands are connected in a head-to-tail fashion by classical N—H⋯N hydrogen-bonding interactions and form a ribbon-like structure parallel to the b axis. Parallel ribbons are weakly linked through C—H⋯N, C—H⋯O and C—H⋯π interactions.
Related literature
For the synthesis and characterization of other alkali metal azide-crown ether complexes, see: Brown et al. (2006, 2008). For single-crystal structure determinations of other compounds with 4-hexylurea-benzo-15-crown-5, see: Cazacu et al. (2006, 2009).
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis PRO (Agilent, 2010); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: CRYSTALS.
Supporting information
10.1107/S1600536812015590/rk2333sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812015590/rk2333Isup2.hkl
To a solution of 4'-aminobenzo-15-crown-5 (300 mg, 1.06 mmol, 1eq.) in acetonitrile was added hexyl isocyanate (175 mg, 1.38 mmol, 1.3 eq.). After 12 h under reflux, the solution was evaporated. The residue was dissolved in chloroform and precipitated by addition of hexane. The resulting precipitate was isolated by filtration and washed with hexane to give the crude title compound (302 mg, 70% yield). The compound was dissolved in chloroform, a small amount of NaN3 was added and the mixture was sonicated for 30 minutes. The compound crystallized after a few hours.
The H atoms were all located in a difference map, but those attached to carbon atoms were repositioned geometrically. The H atoms attached to carbon atoms were initially refined with soft restraints on the bond lengths and angles to regularize their geometry - C–H in the range 0.93Å-0.98Å) and Uiso(H) = 1.2(1.5)Ueq(C), after which the positions were refined with riding constraints. The positions of the H atoms attached to nitrogen atoms were freely refined, but their isotropic atomic displacement parameter were constrained as for the other H atoms.
Data collection: CrysAlis PRO (Agilent, 2010); cell
CrysAlis PRO (Agilent, 2010); data reduction: CrysAlis PRO (Agilent, 2010); program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: CRYSTALS (Betteridge et al., 2003).Fig. 1. View of the title compound showing atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are presented as a small spheres of arbitrary radius. | |
Fig. 2. Packing of the title complex with hydrogen bonds between urea groups and azide anions indicated by dotted lines. Symmetry code: (ii) -x+1, -y, -z. |
[Na2(N3)2(C21H34N2O6)2]·2CHCl3 | Z = 1 |
Mr = 1189.78 | F(000) = 624 |
Triclinic, P1 | Dx = 1.396 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.8168 (3) Å | Cell parameters from 3569 reflections |
b = 9.9342 (3) Å | θ = 2.1–29.0° |
c = 18.5202 (7) Å | µ = 0.38 mm−1 |
α = 82.320 (3)° | T = 175 K |
β = 83.459 (3)° | Needle, colourless |
γ = 87.784 (3)° | 0.45 × 0.20 × 0.03 mm |
V = 1415.58 (9) Å3 |
Agilent Xcalibur Sapphire-3 CCD Gemini diffractometer | 6470 independent reflections |
Radiation source: Enhance (Mo) X-ray Source | 5176 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.018 |
Detector resolution: 16.0143 pixels mm-1 | θmax = 29.1°, θmin = 2.1° |
ω scans | h = −10→6 |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010) | k = −12→13 |
Tmin = 0.895, Tmax = 1.000 | l = −21→24 |
11317 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.114 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.91 | Modified Sheldrick method w = 1/[σ2(F2) + (0.07P)2 + 0.69P], where P = (max(Fo2,0) + 2Fc2)/3 |
6470 reflections | (Δ/σ)max < 0.001 |
340 parameters | Δρmax = 0.58 e Å−3 |
0 restraints | Δρmin = −0.75 e Å−3 |
[Na2(N3)2(C21H34N2O6)2]·2CHCl3 | γ = 87.784 (3)° |
Mr = 1189.78 | V = 1415.58 (9) Å3 |
Triclinic, P1 | Z = 1 |
a = 7.8168 (3) Å | Mo Kα radiation |
b = 9.9342 (3) Å | µ = 0.38 mm−1 |
c = 18.5202 (7) Å | T = 175 K |
α = 82.320 (3)° | 0.45 × 0.20 × 0.03 mm |
β = 83.459 (3)° |
Agilent Xcalibur Sapphire-3 CCD Gemini diffractometer | 6470 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2010) | 5176 reflections with I > 2σ(I) |
Tmin = 0.895, Tmax = 1.000 | Rint = 0.018 |
11317 measured reflections |
R[F2 > 2σ(F2)] = 0.039 | 0 restraints |
wR(F2) = 0.114 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.91 | Δρmax = 0.58 e Å−3 |
6470 reflections | Δρmin = −0.75 e Å−3 |
340 parameters |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.29314 (7) | 0.12610 (6) | 0.36316 (4) | 0.0548 | |
C2 | 0.4561 (2) | 0.23861 (19) | 0.37104 (11) | 0.0356 | |
Cl3 | 0.36653 (10) | 0.38944 (6) | 0.39926 (4) | 0.0680 | |
Cl4 | 0.59472 (7) | 0.16173 (6) | 0.43316 (3) | 0.0512 | |
H21 | 0.5200 | 0.2581 | 0.3235 | 0.0434* | |
Na5 | 0.68726 (8) | 0.47918 (6) | 0.16960 (4) | 0.0242 | |
O6 | 0.48814 (15) | 0.33622 (11) | −0.18581 (7) | 0.0285 | |
C7 | 0.5384 (2) | 0.21761 (16) | −0.18696 (10) | 0.0242 | |
N8 | 0.5406 (2) | 0.15234 (17) | −0.24686 (9) | 0.0374 | |
C9 | 0.4602 (3) | 0.20770 (19) | −0.31162 (11) | 0.0355 | |
C10 | 0.2949 (2) | 0.13728 (18) | −0.31851 (10) | 0.0313 | |
C11 | 0.2103 (2) | 0.19461 (19) | −0.38655 (10) | 0.0333 | |
C12 | 0.0434 (3) | 0.1250 (2) | −0.39224 (12) | 0.0389 | |
C13 | −0.0472 (3) | 0.1801 (2) | −0.45926 (12) | 0.0418 | |
C14 | −0.1142 (3) | 0.3249 (2) | −0.45882 (13) | 0.0478 | |
H143 | −0.1799 | 0.3539 | −0.4990 | 0.0713* | |
H142 | −0.0221 | 0.3863 | −0.4614 | 0.0704* | |
H141 | −0.1882 | 0.3325 | −0.4137 | 0.0719* | |
H132 | 0.0331 | 0.1764 | −0.5028 | 0.0512* | |
H131 | −0.1463 | 0.1226 | −0.4624 | 0.0506* | |
H122 | −0.0352 | 0.1330 | −0.3482 | 0.0473* | |
H121 | 0.0706 | 0.0298 | −0.3933 | 0.0470* | |
H112 | 0.2902 | 0.1861 | −0.4306 | 0.0398* | |
H111 | 0.1888 | 0.2919 | −0.3852 | 0.0400* | |
H102 | 0.2142 | 0.1441 | −0.2755 | 0.0370* | |
H101 | 0.3182 | 0.0418 | −0.3200 | 0.0371* | |
H92 | 0.5433 | 0.1998 | −0.3547 | 0.0427* | |
H91 | 0.4372 | 0.3008 | −0.3078 | 0.0431* | |
N15 | 0.59760 (19) | 0.13769 (14) | −0.12871 (8) | 0.0269 | |
C16 | 0.64335 (19) | 0.17637 (15) | −0.06340 (9) | 0.0214 | |
C17 | 0.6957 (2) | 0.07199 (15) | −0.01212 (10) | 0.0249 | |
C18 | 0.7524 (2) | 0.10018 (15) | 0.05227 (9) | 0.0258 | |
C19 | 0.7575 (2) | 0.23293 (15) | 0.06711 (9) | 0.0218 | |
O20 | 0.82203 (15) | 0.27206 (11) | 0.12686 (6) | 0.0260 | |
C21 | 0.8591 (3) | 0.16670 (17) | 0.18375 (10) | 0.0334 | |
C22 | 0.9369 (3) | 0.23127 (19) | 0.24011 (11) | 0.0349 | |
O23 | 0.81354 (16) | 0.32292 (13) | 0.27110 (7) | 0.0309 | |
C24 | 0.8829 (3) | 0.3975 (2) | 0.32158 (10) | 0.0346 | |
C25 | 1.0045 (2) | 0.50500 (19) | 0.28352 (10) | 0.0335 | |
O26 | 0.91448 (15) | 0.58835 (12) | 0.23138 (7) | 0.0299 | |
C27 | 1.0246 (2) | 0.68301 (18) | 0.18535 (10) | 0.0306 | |
C28 | 0.9298 (2) | 0.74580 (16) | 0.12253 (10) | 0.0268 | |
O29 | 0.89393 (14) | 0.64030 (11) | 0.08208 (6) | 0.0247 | |
C30 | 0.8041 (2) | 0.68851 (15) | 0.02080 (9) | 0.0224 | |
C31 | 0.7725 (2) | 0.57005 (15) | −0.01825 (9) | 0.0220 | |
O32 | 0.69444 (14) | 0.46654 (10) | 0.03651 (6) | 0.0217 | |
C33 | 0.69806 (19) | 0.33699 (14) | 0.01680 (9) | 0.0193 | |
C34 | 0.64267 (19) | 0.31041 (15) | −0.04782 (9) | 0.0209 | |
H341 | 0.6064 | 0.3812 | −0.0801 | 0.0243* | |
H311 | 0.8789 | 0.5349 | −0.0418 | 0.0259* | |
H312 | 0.6931 | 0.5978 | −0.0562 | 0.0255* | |
H302 | 0.6927 | 0.7308 | 0.0380 | 0.0260* | |
H301 | 0.8754 | 0.7532 | −0.0129 | 0.0261* | |
H282 | 0.9976 | 0.8153 | 0.0910 | 0.0316* | |
H281 | 0.8213 | 0.7896 | 0.1414 | 0.0311* | |
H272 | 1.1304 | 0.6344 | 0.1671 | 0.0363* | |
H271 | 1.0565 | 0.7540 | 0.2137 | 0.0370* | |
H252 | 1.1098 | 0.4676 | 0.2585 | 0.0386* | |
H251 | 1.0413 | 0.5567 | 0.3199 | 0.0395* | |
H242 | 0.9400 | 0.3365 | 0.3574 | 0.0420* | |
H241 | 0.7839 | 0.4424 | 0.3465 | 0.0405* | |
H222 | 0.9731 | 0.1600 | 0.2775 | 0.0429* | |
H221 | 1.0366 | 0.2786 | 0.2178 | 0.0406* | |
H212 | 0.7521 | 0.1202 | 0.2038 | 0.0389* | |
H211 | 0.9414 | 0.1031 | 0.1638 | 0.0403* | |
H181 | 0.7864 | 0.0271 | 0.0860 | 0.0310* | |
H171 | 0.6928 | −0.0178 | −0.0217 | 0.0294* | |
N35 | 0.4334 (2) | 0.33243 (16) | 0.19341 (10) | 0.0391 | |
N36 | 0.38153 (18) | 0.22991 (14) | 0.18164 (8) | 0.0282 | |
N37 | 0.3246 (3) | 0.12827 (17) | 0.17006 (11) | 0.0481 | |
H81 | 0.575 (3) | 0.072 (3) | −0.2411 (14) | 0.0500* | |
H151 | 0.620 (3) | 0.054 (3) | −0.1333 (14) | 0.0500* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0435 (3) | 0.0650 (4) | 0.0582 (4) | −0.0145 (3) | −0.0086 (3) | −0.0103 (3) |
C2 | 0.0341 (10) | 0.0398 (10) | 0.0324 (10) | 0.0002 (7) | −0.0050 (8) | −0.0023 (8) |
Cl3 | 0.0774 (5) | 0.0451 (3) | 0.0827 (5) | 0.0180 (3) | −0.0132 (4) | −0.0146 (3) |
Cl4 | 0.0505 (3) | 0.0560 (3) | 0.0489 (3) | 0.0066 (2) | −0.0208 (2) | −0.0026 (2) |
Na5 | 0.0251 (3) | 0.0210 (3) | 0.0265 (3) | 0.0023 (2) | −0.0035 (3) | −0.0037 (2) |
O6 | 0.0289 (6) | 0.0231 (6) | 0.0352 (7) | 0.0056 (4) | −0.0089 (5) | −0.0076 (5) |
C7 | 0.0184 (7) | 0.0236 (8) | 0.0321 (9) | −0.0002 (6) | −0.0042 (6) | −0.0074 (6) |
N8 | 0.0505 (10) | 0.0286 (8) | 0.0380 (9) | 0.0108 (7) | −0.0195 (8) | −0.0134 (7) |
C9 | 0.0438 (11) | 0.0340 (9) | 0.0313 (10) | −0.0015 (8) | −0.0114 (8) | −0.0070 (7) |
C10 | 0.0341 (10) | 0.0335 (9) | 0.0264 (9) | 0.0031 (7) | −0.0035 (7) | −0.0054 (7) |
C11 | 0.0371 (10) | 0.0356 (10) | 0.0279 (9) | 0.0000 (7) | −0.0082 (8) | −0.0036 (7) |
C12 | 0.0429 (11) | 0.0351 (10) | 0.0400 (11) | −0.0029 (8) | −0.0135 (9) | −0.0016 (8) |
C13 | 0.0465 (12) | 0.0432 (11) | 0.0391 (11) | −0.0019 (9) | −0.0163 (9) | −0.0080 (8) |
C14 | 0.0553 (14) | 0.0410 (11) | 0.0503 (13) | 0.0002 (9) | −0.0238 (11) | −0.0032 (9) |
N15 | 0.0322 (8) | 0.0185 (6) | 0.0325 (8) | 0.0029 (5) | −0.0095 (6) | −0.0083 (5) |
C16 | 0.0166 (7) | 0.0198 (7) | 0.0281 (9) | 0.0000 (5) | −0.0013 (6) | −0.0052 (6) |
C17 | 0.0255 (8) | 0.0154 (7) | 0.0342 (9) | −0.0003 (6) | −0.0029 (7) | −0.0045 (6) |
C18 | 0.0290 (9) | 0.0175 (7) | 0.0297 (9) | 0.0023 (6) | −0.0040 (7) | 0.0015 (6) |
C19 | 0.0211 (7) | 0.0207 (7) | 0.0230 (8) | 0.0011 (5) | −0.0013 (6) | −0.0018 (6) |
O20 | 0.0355 (6) | 0.0193 (5) | 0.0235 (6) | 0.0033 (4) | −0.0085 (5) | −0.0009 (4) |
C21 | 0.0457 (11) | 0.0228 (8) | 0.0319 (10) | 0.0072 (7) | −0.0139 (8) | 0.0017 (7) |
C22 | 0.0406 (10) | 0.0310 (9) | 0.0346 (10) | 0.0115 (7) | −0.0151 (8) | −0.0040 (7) |
O23 | 0.0302 (6) | 0.0373 (7) | 0.0258 (6) | 0.0011 (5) | −0.0063 (5) | −0.0045 (5) |
C24 | 0.0383 (10) | 0.0424 (10) | 0.0245 (9) | 0.0026 (8) | −0.0078 (7) | −0.0063 (7) |
C25 | 0.0298 (9) | 0.0417 (10) | 0.0319 (10) | 0.0023 (7) | −0.0114 (7) | −0.0091 (8) |
O26 | 0.0224 (6) | 0.0370 (7) | 0.0298 (7) | −0.0016 (5) | −0.0035 (5) | −0.0024 (5) |
C27 | 0.0218 (8) | 0.0374 (9) | 0.0337 (10) | −0.0064 (7) | −0.0013 (7) | −0.0087 (7) |
C28 | 0.0229 (8) | 0.0242 (8) | 0.0346 (10) | −0.0043 (6) | −0.0005 (7) | −0.0092 (7) |
O29 | 0.0251 (6) | 0.0207 (5) | 0.0300 (6) | 0.0021 (4) | −0.0068 (5) | −0.0069 (4) |
C30 | 0.0213 (8) | 0.0167 (7) | 0.0287 (9) | 0.0009 (5) | −0.0020 (6) | −0.0017 (6) |
C31 | 0.0258 (8) | 0.0173 (7) | 0.0218 (8) | 0.0005 (5) | −0.0017 (6) | 0.0003 (6) |
O32 | 0.0287 (6) | 0.0140 (5) | 0.0221 (6) | 0.0003 (4) | −0.0011 (4) | −0.0023 (4) |
C33 | 0.0178 (7) | 0.0154 (7) | 0.0240 (8) | 0.0013 (5) | 0.0005 (6) | −0.0030 (5) |
C34 | 0.0174 (7) | 0.0179 (7) | 0.0270 (8) | 0.0022 (5) | −0.0023 (6) | −0.0025 (6) |
N35 | 0.0396 (9) | 0.0360 (9) | 0.0428 (10) | −0.0108 (7) | −0.0045 (7) | −0.0059 (7) |
N36 | 0.0255 (7) | 0.0263 (7) | 0.0318 (8) | 0.0053 (5) | −0.0007 (6) | −0.0041 (6) |
N37 | 0.0555 (11) | 0.0273 (8) | 0.0625 (13) | −0.0011 (7) | 0.0042 (9) | −0.0189 (8) |
Cl1—C2 | 1.758 (2) | C17—H171 | 0.934 |
C2—Cl3 | 1.747 (2) | C18—C19 | 1.385 (2) |
C2—Cl4 | 1.751 (2) | C18—H181 | 0.943 |
C2—H21 | 0.962 | C19—O20 | 1.374 (2) |
Na5—O6i | 2.2786 (12) | C19—C33 | 1.399 (2) |
Na5—O20 | 2.4592 (12) | O20—C21 | 1.4284 (19) |
Na5—O23 | 2.5380 (14) | C21—C22 | 1.492 (3) |
Na5—O26 | 2.5658 (13) | C21—H212 | 0.981 |
Na5—O29 | 2.5902 (13) | C21—H211 | 0.963 |
Na5—O32 | 2.4790 (13) | C22—O23 | 1.426 (2) |
Na5—N35 | 2.4718 (17) | C22—H222 | 0.979 |
O6—C7 | 1.2298 (19) | C22—H221 | 0.950 |
C7—N8 | 1.356 (2) | O23—C24 | 1.432 (2) |
C7—N15 | 1.365 (2) | C24—C25 | 1.505 (3) |
N8—C9 | 1.450 (2) | C24—H242 | 0.973 |
N8—H81 | 0.83 (2) | C24—H241 | 0.979 |
C9—C10 | 1.519 (3) | C25—O26 | 1.417 (2) |
C9—H92 | 0.979 | C25—H252 | 0.983 |
C9—H91 | 0.946 | C25—H251 | 0.973 |
C10—C11 | 1.522 (2) | O26—C27 | 1.426 (2) |
C10—H102 | 0.966 | C27—C28 | 1.503 (3) |
C10—H101 | 0.963 | C27—H272 | 0.990 |
C11—C12 | 1.521 (3) | C27—H271 | 0.989 |
C11—H112 | 0.980 | C28—O29 | 1.4209 (19) |
C11—H111 | 0.978 | C28—H282 | 0.974 |
C12—C13 | 1.526 (3) | C28—H281 | 0.988 |
C12—H122 | 0.975 | O29—C30 | 1.4216 (19) |
C12—H121 | 0.964 | C30—C31 | 1.503 (2) |
C13—C14 | 1.513 (3) | C30—H302 | 0.990 |
C13—H132 | 0.967 | C30—H301 | 0.977 |
C13—H131 | 0.992 | C31—O32 | 1.4446 (18) |
C14—H143 | 0.959 | C31—H311 | 0.969 |
C14—H142 | 0.954 | C31—H312 | 0.995 |
C14—H141 | 0.970 | O32—C33 | 1.3823 (17) |
N15—C16 | 1.404 (2) | C33—C34 | 1.379 (2) |
N15—H151 | 0.86 (2) | C34—H341 | 0.918 |
C16—C17 | 1.392 (2) | N35—N36 | 1.166 (2) |
C16—C34 | 1.399 (2) | N36—N37 | 1.174 (2) |
C17—C18 | 1.384 (2) | ||
Cl1—C2—Cl3 | 110.46 (11) | C18—C17—H171 | 120.1 |
Cl1—C2—Cl4 | 109.86 (11) | C17—C18—C19 | 120.63 (15) |
Cl3—C2—Cl4 | 110.45 (11) | C17—C18—H181 | 118.6 |
Cl1—C2—H21 | 107.5 | C19—C18—H181 | 120.7 |
Cl3—C2—H21 | 109.4 | C18—C19—O20 | 125.05 (14) |
Cl4—C2—H21 | 109.1 | C18—C19—C33 | 118.40 (15) |
O6i—Na5—O20 | 164.07 (5) | O20—C19—C33 | 116.52 (13) |
O6i—Na5—O23 | 125.34 (5) | Na5—O20—C19 | 114.99 (9) |
O20—Na5—O23 | 67.50 (4) | Na5—O20—C21 | 114.92 (10) |
O6i—Na5—O26 | 88.32 (4) | C19—O20—C21 | 116.83 (12) |
O20—Na5—O26 | 106.72 (4) | O20—C21—C22 | 107.44 (14) |
O23—Na5—O26 | 65.51 (4) | O20—C21—H212 | 109.0 |
O6i—Na5—O29 | 87.68 (4) | C22—C21—H212 | 112.3 |
O20—Na5—O29 | 93.92 (4) | O20—C21—H211 | 109.2 |
O23—Na5—O29 | 117.85 (4) | C22—C21—H211 | 109.0 |
O26—Na5—O29 | 64.89 (4) | H212—C21—H211 | 109.9 |
O6i—Na5—O32 | 102.87 (5) | C21—C22—O23 | 109.09 (15) |
O20—Na5—O32 | 64.24 (4) | C21—C22—H222 | 108.9 |
O23—Na5—O32 | 131.59 (4) | O23—C22—H222 | 111.5 |
O26—Na5—O32 | 125.91 (4) | C21—C22—H221 | 109.3 |
O29—Na5—O32 | 62.98 (4) | O23—C22—H221 | 110.2 |
O6i—Na5—N35 | 89.71 (5) | H222—C22—H221 | 107.7 |
O20—Na5—N35 | 81.26 (5) | C22—O23—Na5 | 109.80 (10) |
O23—Na5—N35 | 86.68 (5) | C22—O23—C24 | 112.56 (14) |
O26—Na5—N35 | 143.72 (6) | Na5—O23—C24 | 111.84 (10) |
O29—Na5—N35 | 151.19 (6) | O23—C24—C25 | 112.33 (15) |
O32—Na5—N35 | 89.77 (5) | O23—C24—H242 | 110.7 |
Na5i—O6—C7 | 161.14 (11) | C25—C24—H242 | 110.3 |
O6—C7—N8 | 123.10 (16) | O23—C24—H241 | 105.6 |
O6—C7—N15 | 124.07 (15) | C25—C24—H241 | 108.4 |
N8—C7—N15 | 112.83 (14) | H242—C24—H241 | 109.4 |
C7—N8—C9 | 123.28 (16) | C24—C25—O26 | 107.30 (14) |
C7—N8—H81 | 114.7 (18) | C24—C25—H252 | 113.3 |
C9—N8—H81 | 121.2 (18) | O26—C25—H252 | 109.3 |
N8—C9—C10 | 112.91 (16) | C24—C25—H251 | 108.9 |
N8—C9—H92 | 108.2 | O26—C25—H251 | 111.7 |
C10—C9—H92 | 110.2 | H252—C25—H251 | 106.4 |
N8—C9—H91 | 106.4 | C25—O26—Na5 | 118.39 (10) |
C10—C9—H91 | 110.2 | C25—O26—C27 | 111.97 (13) |
H92—C9—H91 | 108.9 | Na5—O26—C27 | 116.52 (10) |
C9—C10—C11 | 113.14 (16) | O26—C27—C28 | 108.37 (13) |
C9—C10—H102 | 109.7 | O26—C27—H272 | 109.0 |
C11—C10—H102 | 109.3 | C28—C27—H272 | 110.5 |
C9—C10—H101 | 109.7 | O26—C27—H271 | 109.7 |
C11—C10—H101 | 108.4 | C28—C27—H271 | 110.2 |
H102—C10—H101 | 106.3 | H272—C27—H271 | 109.0 |
C10—C11—C12 | 112.71 (16) | C27—C28—O29 | 107.72 (13) |
C10—C11—H112 | 109.9 | C27—C28—H282 | 111.4 |
C12—C11—H112 | 109.3 | O29—C28—H282 | 110.2 |
C10—C11—H111 | 108.1 | C27—C28—H281 | 109.9 |
C12—C11—H111 | 110.2 | O29—C28—H281 | 110.0 |
H112—C11—H111 | 106.5 | H282—C28—H281 | 107.6 |
C11—C12—C13 | 114.65 (17) | C28—O29—Na5 | 106.07 (9) |
C11—C12—H122 | 109.0 | C28—O29—C30 | 112.59 (12) |
C13—C12—H122 | 108.9 | Na5—O29—C30 | 106.28 (9) |
C11—C12—H121 | 107.3 | O29—C30—C31 | 108.55 (12) |
C13—C12—H121 | 109.3 | O29—C30—H302 | 109.4 |
H122—C12—H121 | 107.4 | C31—C30—H302 | 109.7 |
C12—C13—C14 | 113.81 (17) | O29—C30—H301 | 109.2 |
C12—C13—H132 | 108.7 | C31—C30—H301 | 108.5 |
C14—C13—H132 | 108.2 | H302—C30—H301 | 111.3 |
C12—C13—H131 | 109.8 | C30—C31—O32 | 106.77 (12) |
C14—C13—H131 | 107.7 | C30—C31—H311 | 111.4 |
H132—C13—H131 | 108.4 | O32—C31—H311 | 109.9 |
C13—C14—H143 | 112.0 | C30—C31—H312 | 110.3 |
C13—C14—H142 | 111.2 | O32—C31—H312 | 109.9 |
H143—C14—H142 | 108.0 | H311—C31—H312 | 108.6 |
C13—C14—H141 | 109.7 | C31—O32—Na5 | 122.13 (9) |
H143—C14—H141 | 108.0 | C31—O32—C33 | 115.81 (11) |
H142—C14—H141 | 107.8 | Na5—O32—C33 | 115.59 (9) |
C7—N15—C16 | 128.58 (14) | C19—C33—O32 | 116.18 (14) |
C7—N15—H151 | 117.3 (17) | C19—C33—C34 | 121.49 (13) |
C16—N15—H151 | 113.8 (17) | O32—C33—C34 | 122.31 (13) |
N15—C16—C17 | 116.26 (14) | C16—C34—C33 | 119.62 (14) |
N15—C16—C34 | 124.69 (15) | C16—C34—H341 | 121.0 |
C17—C16—C34 | 119.04 (15) | C33—C34—H341 | 119.3 |
C16—C17—C18 | 120.72 (14) | Na5—N35—N36 | 143.11 (14) |
C16—C17—H171 | 119.2 | N35—N36—N37 | 178.08 (19) |
Symmetry code: (i) −x+1, −y+1, −z. |
Cg is the centroid of the C16–C19/C33/C34 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H21···O23 | 0.96 | 2.46 | 3.244 (3) | 138 |
C2—H21···N35 | 0.96 | 2.58 | 3.320 (3) | 134 |
N8—H81···N37ii | 0.83 (2) | 2.39 (3) | 3.156 (3) | 154 (2) |
N15—H151···N37ii | 0.86 (2) | 2.03 (2) | 2.872 (3) | 166 (2) |
C31—H311···O29iii | 0.97 | 2.56 | 3.479 (3) | 159 |
C28—H281···Cgiii | 0.99 | 2.79 | 3.507 (2) | 131 |
Symmetry codes: (ii) −x+1, −y, −z; (iii) −x+2, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | [Na2(N3)2(C21H34N2O6)2]·2CHCl3 |
Mr | 1189.78 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 175 |
a, b, c (Å) | 7.8168 (3), 9.9342 (3), 18.5202 (7) |
α, β, γ (°) | 82.320 (3), 83.459 (3), 87.784 (3) |
V (Å3) | 1415.58 (9) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 0.38 |
Crystal size (mm) | 0.45 × 0.20 × 0.03 |
Data collection | |
Diffractometer | Agilent Xcalibur Sapphire-3 CCD Gemini diffractometer |
Absorption correction | Multi-scan (CrysAlis PRO; Agilent, 2010) |
Tmin, Tmax | 0.895, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11317, 6470, 5176 |
Rint | 0.018 |
(sin θ/λ)max (Å−1) | 0.684 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.114, 0.91 |
No. of reflections | 6470 |
No. of parameters | 340 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.58, −0.75 |
Computer programs: CrysAlis PRO (Agilent, 2010), SUPERFLIP (Palatinus & Chapuis, 2007), CRYSTALS (Betteridge et al., 2003), OLEX2 (Dolomanov et al., 2009).
Cg is the centroid of the C16–C19/C33/C34 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H21···O23 | 0.96 | 2.46 | 3.244 (3) | 138 |
C2—H21···N35 | 0.96 | 2.58 | 3.320 (3) | 134 |
N8—H81···N37i | 0.83 (2) | 2.39 (3) | 3.156 (3) | 154 (2) |
N15—H151···N37i | 0.86 (2) | 2.03 (2) | 2.872 (3) | 166 (2) |
C31—H311···O29ii | 0.97 | 2.56 | 3.479 (3) | 159 |
C28—H281···Cgii | 0.988 | 2.79 | 3.507 (2) | 131 |
Symmetry codes: (i) −x+1, −y, −z; (ii) −x+2, −y+1, −z. |
References
Agilent (2010). CrysAlis PRO. Agilent Technologies, Yarnton, England. Google Scholar
Betteridge, P. W., Carruthers, J. R., Cooper, R. I., Prout, K. & Watkin, D. J. (2003). J. Appl. Cryst. 36, 1487. Web of Science CrossRef IUCr Journals Google Scholar
Brown, M. D., Davis, M. F., Dyke, J. M., Ferrante, F., Levason, W., Ogden, J. S. & Webster, M. (2008). Chem. Eur. J. 14, 2615–2624. Web of Science CSD CrossRef PubMed CAS Google Scholar
Brown, M. D., Dyke, J. M., Ferrante, F., Levason, W. J., Ogden, S. & Webster, M. (2006). Chem. Eur. J. 12, 2620–2629. Web of Science CSD CrossRef PubMed CAS Google Scholar
Cazacu, A., Legrand, Y.-M., Pasc, A., Nasr, G., Van der Lee, A., Mahon, E. & Barboiu, M. (2009). Proc. Natl Acad. Sci. USA, 106, 8117–8122. Web of Science CSD CrossRef PubMed CAS Google Scholar
Cazacu, A., Tong, C., Van der Lee, A., Fyles, T. M. & Barboiu, M. (2006). J. Am. Chem. Soc. 128, 9541–9548. Web of Science CSD CrossRef PubMed CAS Google Scholar
Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341. Web of Science CrossRef CAS IUCr Journals Google Scholar
Palatinus, L. & Chapuis, G. (2007). J. Appl. Cryst. 40, 786–790. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
In this contribution we present the structure of a 15 C5 crown ether (4-hexylurea-benzo-15-crown-5) co-crystallized with sodium azide and chloroform as solvate. Structures with 4-hexylurea-benzo-15-crown-5 have been recently described (Brown et al., 2006; 2008). These authors focused in particular on the M–Nterminal metal-azide bond length and charge densities on the metal (M) and terminal nitrogen centre (Nterminal) by X-ray crystallography and DFT calculations. They failed however to get the intended crystal structure of the coordinated sodium azide with the crown ether, obtaining only a crown ether coordination with water. In this paper, we describe the crown ether derivative, bearing a benzene ring along with a urea and hexyl alkyl chain, coordinated with sodium azide. Examples of such derivatives have been reported, but with different salts such as potassium nitrate (Cazacu et al., 2009) or without any salts (Cazacu et al., 2006).
In the asymmetric unit of the title compound, one 15 C5 crown ether molecules, one sodium cation, one azide molecule and one solvent chloroform molecule are present (Fig. 1). The crown ethers appear as a head-to-tail dimer, the crown ether facing the urea portion of the second molecule. Sodium is hepta-coordinated by the five oxygen atoms of the crown ether, one of the N atoms of the azide group and with the oxygen of the urea group from the second molecule. The experimental Na–N distance (2.472 (2)Å) is significantly longer than the DFT calculated Na–N distance (2.263 Å; Brown et al., 2006). A possible explanation is that the azide group in the present structure is also linked through H-bonds to NH from the urea function of the second molecule, one branch being significantly stronger than the other (N15H151···N37ii = 2.03 (2)Å versus N8H81···N37i = 2.39 (3)Å). This will pull the azide group slightly outside the interaction sphere of the sodium cation. In this way coordination and H-bonds are forming a ribbon like structure along the b-axis (Fig. 2). The individual ribbons are weakly linked through CH···π interactions (centroid Cg to H281 distance 2.79Å and C28–H281···Cg angle 131°, where Cg is the centroid formed by the aromatic ring C16-C19/C33/C34). A weak CH···O non-classical interaction is present between C31 and O29 - C31H311···O29iii = 2.56Å. Symmetry codes: (ii) -x+1, -y, -z;(iii) -x+2, -y+1, -z.