organic compounds
Redetermination of 1,3-diammonio-1,2,3-trideoxy-cis-inositol dichloride
aFachrichtung Chemie, Universität des Saarlandes, Postfach 151150, D-66041 Saarbrücken, Germany
*Correspondence e-mail: hegetschweiler@mx.uni-saarland.de
The 6H16N2O32+·2Cl−, has been reported previously by Palm [Acta Cryst. (1967), 22, 209–216] from Weisenberg camera data, with R1 = 10.5%, isotropic of non-H atoms and H atoms not located. We remeasured a data set of the title compound and present a more precise The contains two unique 1,3-diammonio-1,2,3-trideoxy-cis-inositol cations and four Cl− counter-ions. The cyclohexane rings of both inositol cations adopt chair conformations with two axial hydroxy groups. An extended network of hydrogen bonds is formed. The four chloride counter ions are hydrogen bonded to the hydroxy and ammonium groups of the cations by N—H⋯Cl and O—H⋯Cl interactions. The cations are aligned into wavy layers by cation⋯cation interactions of the form N—H⋯O(ax), N—H⋯O(eq) and O(ax)—H⋯O(eq). Intramolecular hydrogen bonding between the axial hydroxy groups is, however, not observed.
of the title compound, CRelated literature
An earlier, less accurate ). The of 1,3-diammonio-1,2,3-trideoxy-cis-inositol sulfate has been reported by Neis et al. (2012). The importance of intramolecular hydrogen bonding in 1,3,5-trisubstituted cyclohexane derivatives has been described by Gencheva et al. (2000), Saaidi et al. (2008) and Neis et al. (2010), and the implication of increased 1,3-diaxial repulsion on the conformation of a cyclohexane ring has been discussed by Fritsche-Lang et al. (1985), Kramer et al. (1998) and Kuppert et al. (2006). For the synthesis, see: Merten et al. (2012). For the treatment of hydrogen atoms in SHELXL, see: Müller et al. (2006).
of the title compound was performed by Palm (1967Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2010); cell SAINT (Bruker, 2010); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2011); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536812012366/sj5213sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812012366/sj5213Isup2.hkl
The title compound was prepared following the protocol given by Merten et al. (2012). 1H-NMR (D2O, pH 1.0): δ (p.p.m.) = 4.17 (2H), 3.74 (1H), 3.56 (2H), 2.12 (2H). 13C-NMR (D2O, pH 1.0): δ (p.p.m.) = 25.2, 43.0, 63.7, 68.2. Single crystals were grown from an aqueous solution by slow evaporation at 298 K.
All non-hydrogen atoms were refined using anisotropic displacement parameters. Hydrogen atoms were treated as recommended by Müller et al. (2006): A riding model was used for C-bonded hydrogen atoms. The positional parameters of the O- and N-bonded hydrogen atoms were refined using isotropic displacement parameters which were set to 1.5×Ueq of the pivot atom. In addition, restraints of 0.84 and 0.88 Å were used for the O—H and N—H distances, respectively.
Data collection: APEX2 (Bruker, 2010); cell
SAINT (Bruker, 2010); data reduction: SAINT (Bruker, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2011); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. Molecular structure of the title compound. The asymmetric unit comprising two crystallographically independent cations and four crystallographically independent chloride counter ions is shown. Displacement ellipsoids are drawn at the 50% probability level. | |
Fig. 2. Section of the puckered layer, which is formed by hydrogen bonding between cation 1 and cation 2 entities (ball and stick model). |
C6H16N2O32+·2Cl− | F(000) = 496 |
Mr = 235.11 | Dx = 1.522 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 9336 reflections |
a = 7.7899 (4) Å | θ = 2.6–40.5° |
b = 10.1254 (5) Å | µ = 0.61 mm−1 |
c = 13.0136 (7) Å | T = 130 K |
β = 91.156 (2)° | Prism, colorless |
V = 1026.25 (9) Å3 | 0.30 × 0.22 × 0.15 mm |
Z = 4 |
Bruker–Nonius X8 APEX KappaCCD diffractometer | 4459 independent reflections |
Radiation source: fine-focus sealed tube | 4429 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.017 |
ϕ and ω scans | θmax = 27.0°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2010) | h = −9→9 |
Tmin = 0.838, Tmax = 0.914 | k = −12→12 |
16242 measured reflections | l = −16→16 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.017 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.047 | w = 1/[σ2(Fo2) + (0.0292P)2 + 0.1788P] where P = (Fo2 + 2Fc2)/3 |
S = 1.06 | (Δ/σ)max = 0.001 |
4459 reflections | Δρmax = 0.27 e Å−3 |
289 parameters | Δρmin = −0.15 e Å−3 |
19 restraints | Absolute structure: Flack (1983), 2093 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.01 (3) |
C6H16N2O32+·2Cl− | V = 1026.25 (9) Å3 |
Mr = 235.11 | Z = 4 |
Monoclinic, P21 | Mo Kα radiation |
a = 7.7899 (4) Å | µ = 0.61 mm−1 |
b = 10.1254 (5) Å | T = 130 K |
c = 13.0136 (7) Å | 0.30 × 0.22 × 0.15 mm |
β = 91.156 (2)° |
Bruker–Nonius X8 APEX KappaCCD diffractometer | 4459 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2010) | 4429 reflections with I > 2σ(I) |
Tmin = 0.838, Tmax = 0.914 | Rint = 0.017 |
16242 measured reflections |
R[F2 > 2σ(F2)] = 0.017 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.047 | Δρmax = 0.27 e Å−3 |
S = 1.06 | Δρmin = −0.15 e Å−3 |
4459 reflections | Absolute structure: Flack (1983), 2093 Friedel pairs |
289 parameters | Absolute structure parameter: 0.01 (3) |
19 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.65695 (15) | 0.78053 (13) | 0.49259 (9) | 0.0116 (2) | |
H1A | 0.7440 | 0.8297 | 0.4535 | 0.014* | |
H1B | 0.6742 | 0.6850 | 0.4805 | 0.014* | |
C2 | 0.47789 (15) | 0.82069 (11) | 0.45618 (9) | 0.0109 (2) | |
H2 | 0.4629 | 0.9177 | 0.4672 | 0.013* | |
C3 | 0.33980 (16) | 0.74645 (11) | 0.51435 (9) | 0.0117 (2) | |
H3 | 0.2245 | 0.7822 | 0.4936 | 0.014* | |
C4 | 0.36884 (16) | 0.76840 (13) | 0.63009 (9) | 0.0135 (2) | |
H4 | 0.3478 | 0.8638 | 0.6453 | 0.016* | |
C5 | 0.54882 (17) | 0.73308 (12) | 0.66995 (9) | 0.0141 (2) | |
H5 | 0.5605 | 0.7597 | 0.7438 | 0.017* | |
C6 | 0.67808 (15) | 0.81082 (12) | 0.60699 (9) | 0.0129 (2) | |
H6 | 0.6605 | 0.9075 | 0.6185 | 0.015* | |
N18 | 0.72743 (14) | 1.01783 (11) | 0.05624 (8) | 0.0149 (2) | |
H18A | 0.6277 (19) | 1.0191 (18) | 0.0889 (12) | 0.022* | |
H18B | 0.789 (2) | 1.0895 (16) | 0.0746 (14) | 0.022* | |
H18C | 0.706 (2) | 1.0188 (19) | −0.0129 (10) | 0.022* | |
N22 | 0.73895 (14) | 0.53468 (11) | 0.10007 (8) | 0.0154 (2) | |
H22C | 0.706 (2) | 0.5268 (19) | 0.0357 (11) | 0.023* | |
H22A | 0.801 (2) | 0.4651 (17) | 0.1183 (13) | 0.023* | |
H22B | 0.646 (2) | 0.5385 (19) | 0.1356 (13) | 0.023* | |
O19 | 0.75839 (12) | 0.93190 (9) | 0.26803 (7) | 0.01429 (18) | |
H19 | 0.751 (2) | 1.0080 (15) | 0.2863 (13) | 0.021* | |
O20 | 1.09187 (12) | 0.81557 (10) | 0.32436 (7) | 0.0206 (2) | |
H20 | 1.028 (2) | 0.8689 (19) | 0.3606 (14) | 0.031* | |
O21 | 0.78841 (12) | 0.64823 (10) | 0.28780 (7) | 0.01674 (19) | |
H21 | 0.837 (2) | 0.6185 (18) | 0.3397 (12) | 0.025* | |
N7 | 0.45629 (14) | 0.79085 (11) | 0.34387 (8) | 0.0132 (2) | |
H7C | 0.3542 (19) | 0.8197 (17) | 0.3215 (13) | 0.020* | |
H7B | 0.537 (2) | 0.8271 (17) | 0.3103 (13) | 0.020* | |
H7A | 0.462 (2) | 0.7050 (14) | 0.3315 (13) | 0.020* | |
C13 | 0.83453 (16) | 0.90192 (12) | 0.08871 (9) | 0.0140 (2) | |
H13 | 0.9361 | 0.8970 | 0.0431 | 0.017* | |
O8 | 0.34834 (12) | 0.61091 (9) | 0.48626 (7) | 0.01400 (17) | |
H8 | 0.2471 (19) | 0.5838 (18) | 0.4902 (14) | 0.021* | |
C14 | 0.89926 (16) | 0.92022 (12) | 0.19938 (9) | 0.0131 (2) | |
H14 | 0.9704 | 1.0023 | 0.2037 | 0.016* | |
O9 | 0.24058 (12) | 0.69200 (10) | 0.68068 (7) | 0.01881 (19) | |
H9 | 0.213 (2) | 0.7301 (18) | 0.7312 (13) | 0.028* | |
C15 | 1.01194 (16) | 0.80171 (13) | 0.22624 (9) | 0.0152 (2) | |
H15 | 1.1064 | 0.8011 | 0.1754 | 0.018* | |
O10 | 0.58596 (14) | 0.59647 (10) | 0.66089 (7) | 0.0204 (2) | |
H10 | 0.601 (2) | 0.5671 (19) | 0.7219 (12) | 0.031* | |
C16 | 0.92115 (16) | 0.66793 (12) | 0.21605 (9) | 0.0134 (2) | |
H16 | 1.0084 | 0.5963 | 0.2255 | 0.016* | |
N11 | 0.85723 (14) | 0.77409 (13) | 0.63986 (8) | 0.0182 (2) | |
H11C | 0.931 (2) | 0.8269 (18) | 0.6089 (14) | 0.027* | |
H11B | 0.872 (2) | 0.780 (2) | 0.7055 (11) | 0.027* | |
H11A | 0.883 (2) | 0.6931 (16) | 0.6164 (14) | 0.027* | |
C17 | 0.84314 (16) | 0.65722 (12) | 0.10753 (9) | 0.0132 (2) | |
H17 | 0.9392 | 0.6500 | 0.0580 | 0.016* | |
C12 | 0.73148 (16) | 0.77507 (13) | 0.07590 (9) | 0.0137 (2) | |
H12A | 0.6929 | 0.7652 | 0.0033 | 0.016* | |
H12B | 0.6285 | 0.7786 | 0.1192 | 0.016* | |
Cl1 | 0.95255 (4) | 0.27346 (3) | 0.13119 (2) | 0.01574 (7) | |
Cl2 | 0.96850 (3) | 0.51134 (3) | 0.48456 (2) | 0.01623 (6) | |
Cl3 | 0.36075 (4) | 0.53635 (3) | 0.18167 (2) | 0.02006 (7) | |
Cl4 | 0.34728 (4) | 0.98731 (3) | 0.12868 (2) | 0.02147 (7) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0106 (5) | 0.0148 (6) | 0.0092 (5) | −0.0009 (4) | −0.0005 (4) | 0.0008 (4) |
C2 | 0.0121 (5) | 0.0109 (5) | 0.0096 (5) | −0.0002 (4) | −0.0004 (4) | −0.0002 (4) |
C3 | 0.0111 (5) | 0.0103 (5) | 0.0138 (5) | 0.0004 (4) | 0.0021 (4) | −0.0004 (4) |
C4 | 0.0166 (6) | 0.0108 (5) | 0.0134 (5) | −0.0016 (4) | 0.0059 (4) | −0.0001 (4) |
C5 | 0.0203 (6) | 0.0122 (5) | 0.0097 (5) | −0.0014 (5) | 0.0021 (4) | 0.0003 (4) |
C6 | 0.0138 (6) | 0.0140 (6) | 0.0107 (5) | −0.0020 (4) | −0.0015 (4) | 0.0004 (4) |
N18 | 0.0175 (5) | 0.0141 (5) | 0.0131 (4) | −0.0007 (4) | −0.0003 (4) | 0.0020 (4) |
N22 | 0.0177 (5) | 0.0142 (5) | 0.0140 (5) | 0.0010 (4) | −0.0013 (4) | −0.0019 (4) |
O19 | 0.0168 (4) | 0.0137 (4) | 0.0125 (4) | 0.0013 (3) | 0.0033 (3) | −0.0020 (3) |
O20 | 0.0189 (5) | 0.0250 (5) | 0.0176 (4) | 0.0031 (4) | −0.0048 (4) | −0.0033 (4) |
O21 | 0.0170 (5) | 0.0219 (5) | 0.0114 (4) | 0.0020 (4) | 0.0003 (3) | 0.0017 (3) |
N7 | 0.0133 (5) | 0.0159 (5) | 0.0104 (5) | −0.0016 (4) | −0.0012 (4) | 0.0010 (4) |
C13 | 0.0158 (6) | 0.0136 (6) | 0.0125 (5) | 0.0003 (4) | 0.0017 (4) | 0.0005 (4) |
O8 | 0.0129 (4) | 0.0115 (4) | 0.0177 (4) | −0.0025 (3) | 0.0029 (3) | −0.0030 (3) |
C14 | 0.0113 (5) | 0.0139 (6) | 0.0140 (6) | −0.0012 (4) | 0.0011 (4) | −0.0014 (4) |
O9 | 0.0214 (5) | 0.0175 (5) | 0.0180 (4) | −0.0036 (4) | 0.0115 (4) | −0.0020 (4) |
C15 | 0.0115 (5) | 0.0173 (6) | 0.0167 (6) | 0.0015 (4) | −0.0028 (4) | −0.0033 (5) |
O10 | 0.0302 (5) | 0.0148 (4) | 0.0162 (4) | 0.0005 (4) | −0.0002 (4) | 0.0018 (4) |
C16 | 0.0128 (6) | 0.0142 (6) | 0.0133 (5) | 0.0022 (4) | −0.0005 (4) | −0.0003 (4) |
N11 | 0.0171 (5) | 0.0222 (6) | 0.0151 (5) | −0.0032 (5) | −0.0055 (4) | 0.0027 (5) |
C17 | 0.0135 (6) | 0.0133 (6) | 0.0127 (5) | 0.0000 (4) | 0.0021 (4) | −0.0020 (4) |
C12 | 0.0166 (5) | 0.0144 (6) | 0.0101 (5) | 0.0001 (5) | −0.0015 (4) | −0.0010 (4) |
Cl1 | 0.01912 (14) | 0.01465 (13) | 0.01360 (12) | −0.00009 (11) | 0.00369 (10) | 0.00124 (10) |
Cl2 | 0.01362 (13) | 0.01454 (13) | 0.02052 (14) | −0.00019 (10) | 0.00009 (10) | 0.00263 (11) |
Cl3 | 0.01973 (14) | 0.02535 (17) | 0.01513 (13) | −0.00115 (12) | 0.00145 (10) | −0.00093 (12) |
Cl4 | 0.01848 (14) | 0.03068 (18) | 0.01520 (13) | −0.00287 (12) | −0.00074 (10) | 0.00097 (12) |
C1—C2 | 1.5195 (16) | O19—H19 | 0.809 (15) |
C1—C6 | 1.5257 (15) | O20—C15 | 1.4163 (15) |
C1—H1A | 0.9900 | O20—H20 | 0.878 (15) |
C1—H1B | 0.9900 | O21—C16 | 1.4212 (15) |
C2—N7 | 1.4987 (14) | O21—H21 | 0.825 (14) |
C2—C3 | 1.5258 (16) | N7—H7C | 0.890 (14) |
C2—H2 | 1.0000 | N7—H7B | 0.852 (14) |
C3—O8 | 1.4222 (14) | N7—H7A | 0.885 (14) |
C3—C4 | 1.5347 (16) | C13—C12 | 1.5221 (18) |
C3—H3 | 1.0000 | C13—C14 | 1.5275 (16) |
C4—O9 | 1.4341 (14) | C13—H13 | 1.0000 |
C4—C5 | 1.5275 (18) | O8—H8 | 0.838 (14) |
C4—H4 | 1.0000 | C14—C15 | 1.5232 (17) |
C5—O10 | 1.4186 (15) | C14—H14 | 1.0000 |
C5—C6 | 1.5291 (16) | O9—H9 | 0.796 (15) |
C5—H5 | 1.0000 | C15—C16 | 1.5326 (17) |
C6—N11 | 1.4983 (16) | C15—H15 | 1.0000 |
C6—H6 | 1.0000 | O10—H10 | 0.854 (15) |
N18—C13 | 1.4959 (16) | C16—C17 | 1.5299 (16) |
N18—H18A | 0.893 (14) | C16—H16 | 1.0000 |
N18—H18B | 0.900 (14) | N11—H11C | 0.885 (15) |
N18—H18C | 0.911 (13) | N11—H11B | 0.862 (14) |
N22—C17 | 1.4848 (16) | N11—H11A | 0.898 (15) |
N22—H22C | 0.874 (14) | C17—C12 | 1.5283 (17) |
N22—H22A | 0.883 (15) | C17—H17 | 1.0000 |
N22—H22B | 0.865 (14) | C12—H12A | 0.9900 |
O19—C14 | 1.4339 (15) | C12—H12B | 0.9900 |
C2—C1—C6 | 109.31 (10) | C2—N7—H7C | 109.6 (11) |
C2—C1—H1A | 109.8 | C2—N7—H7B | 110.1 (12) |
C6—C1—H1A | 109.8 | H7C—N7—H7B | 110.5 (16) |
C2—C1—H1B | 109.8 | C2—N7—H7A | 111.7 (12) |
C6—C1—H1B | 109.8 | H7C—N7—H7A | 107.9 (17) |
H1A—C1—H1B | 108.3 | H7B—N7—H7A | 106.9 (17) |
N7—C2—C1 | 109.54 (9) | N18—C13—C12 | 109.95 (10) |
N7—C2—C3 | 108.55 (9) | N18—C13—C14 | 110.05 (10) |
C1—C2—C3 | 111.43 (9) | C12—C13—C14 | 111.65 (10) |
N7—C2—H2 | 109.1 | N18—C13—H13 | 108.4 |
C1—C2—H2 | 109.1 | C12—C13—H13 | 108.4 |
C3—C2—H2 | 109.1 | C14—C13—H13 | 108.4 |
O8—C3—C2 | 108.11 (9) | C3—O8—H8 | 104.6 (12) |
O8—C3—C4 | 112.66 (10) | O19—C14—C15 | 111.51 (10) |
C2—C3—C4 | 108.91 (10) | O19—C14—C13 | 110.81 (10) |
O8—C3—H3 | 109.0 | C15—C14—C13 | 107.37 (10) |
C2—C3—H3 | 109.0 | O19—C14—H14 | 109.0 |
C4—C3—H3 | 109.0 | C15—C14—H14 | 109.0 |
O9—C4—C5 | 111.16 (10) | C13—C14—H14 | 109.0 |
O9—C4—C3 | 106.39 (10) | C4—O9—H9 | 108.6 (14) |
C5—C4—C3 | 114.55 (10) | O20—C15—C14 | 111.69 (10) |
O9—C4—H4 | 108.2 | O20—C15—C16 | 111.06 (10) |
C5—C4—H4 | 108.2 | C14—C15—C16 | 114.43 (10) |
C3—C4—H4 | 108.2 | O20—C15—H15 | 106.4 |
O10—C5—C4 | 112.79 (10) | C14—C15—H15 | 106.4 |
O10—C5—C6 | 108.65 (10) | C16—C15—H15 | 106.4 |
C4—C5—C6 | 107.90 (10) | C5—O10—H10 | 106.7 (13) |
O10—C5—H5 | 109.1 | O21—C16—C17 | 108.41 (10) |
C4—C5—H5 | 109.1 | O21—C16—C15 | 114.07 (10) |
C6—C5—H5 | 109.1 | C17—C16—C15 | 108.45 (10) |
N11—C6—C1 | 108.07 (10) | O21—C16—H16 | 108.6 |
N11—C6—C5 | 109.81 (10) | C17—C16—H16 | 108.6 |
C1—C6—C5 | 111.11 (10) | C15—C16—H16 | 108.6 |
N11—C6—H6 | 109.3 | C6—N11—H11C | 109.0 (12) |
C1—C6—H6 | 109.3 | C6—N11—H11B | 111.6 (13) |
C5—C6—H6 | 109.3 | H11C—N11—H11B | 109.4 (18) |
C13—N18—H18A | 111.2 (12) | C6—N11—H11A | 109.9 (12) |
C13—N18—H18B | 105.4 (12) | H11C—N11—H11A | 104.3 (17) |
H18A—N18—H18B | 109.1 (17) | H11B—N11—H11A | 112.3 (18) |
C13—N18—H18C | 112.1 (11) | N22—C17—C12 | 109.12 (10) |
H18A—N18—H18C | 109.2 (15) | N22—C17—C16 | 109.03 (10) |
H18B—N18—H18C | 109.8 (17) | C12—C17—C16 | 113.99 (10) |
C17—N22—H22C | 106.7 (12) | N22—C17—H17 | 108.2 |
C17—N22—H22A | 110.8 (12) | C12—C17—H17 | 108.2 |
H22C—N22—H22A | 109.4 (17) | C16—C17—H17 | 108.2 |
C17—N22—H22B | 112.8 (13) | C13—C12—C17 | 109.47 (10) |
H22C—N22—H22B | 106.6 (16) | C13—C12—H12A | 109.8 |
H22A—N22—H22B | 110.3 (17) | C17—C12—H12A | 109.8 |
C14—O19—H19 | 108.9 (13) | C13—C12—H12B | 109.8 |
C15—O20—H20 | 107.5 (13) | C17—C12—H12B | 109.8 |
C16—O21—H21 | 105.0 (13) | H12A—C12—H12B | 108.2 |
C6—C1—C2—N7 | −179.87 (10) | N18—C13—C14—O19 | 59.93 (13) |
C6—C1—C2—C3 | −59.74 (13) | C12—C13—C14—O19 | −62.45 (13) |
N7—C2—C3—O8 | 53.24 (12) | N18—C13—C14—C15 | −178.07 (10) |
C1—C2—C3—O8 | −67.46 (12) | C12—C13—C14—C15 | 59.55 (13) |
N7—C2—C3—C4 | 175.96 (9) | O19—C14—C15—O20 | −64.11 (13) |
C1—C2—C3—C4 | 55.26 (12) | C13—C14—C15—O20 | 174.33 (10) |
O8—C3—C4—O9 | −57.58 (13) | O19—C14—C15—C16 | 63.16 (13) |
C2—C3—C4—O9 | −177.52 (9) | C13—C14—C15—C16 | −58.41 (13) |
O8—C3—C4—C5 | 65.65 (14) | O20—C15—C16—O21 | 61.04 (13) |
C2—C3—C4—C5 | −54.29 (13) | C14—C15—C16—O21 | −66.54 (13) |
O9—C4—C5—O10 | 55.85 (13) | O20—C15—C16—C17 | −178.05 (10) |
C3—C4—C5—O10 | −64.77 (13) | C14—C15—C16—C17 | 54.36 (13) |
O9—C4—C5—C6 | 175.88 (9) | O21—C16—C17—N22 | −49.61 (13) |
C3—C4—C5—C6 | 55.25 (13) | C15—C16—C17—N22 | −173.95 (10) |
C2—C1—C6—N11 | −178.30 (10) | O21—C16—C17—C12 | 72.58 (13) |
C2—C1—C6—C5 | 61.17 (13) | C15—C16—C17—C12 | −51.77 (13) |
O10—C5—C6—N11 | −54.54 (13) | N18—C13—C12—C17 | 179.03 (10) |
C4—C5—C6—N11 | −177.14 (10) | C14—C13—C12—C17 | −58.53 (13) |
O10—C5—C6—C1 | 64.96 (13) | N22—C17—C12—C13 | 177.03 (10) |
C4—C5—C6—C1 | −57.64 (13) | C16—C17—C12—C13 | 54.90 (13) |
D—H···A | D—H | H···A | D···A | D—H···A |
N18—H18A···Cl4 | 0.89 (1) | 2.28 (1) | 3.1411 (11) | 163 (2) |
N18—H18B···Cl1i | 0.90 (1) | 2.37 (2) | 3.2646 (12) | 177 (2) |
N18—H18C···Cl3ii | 0.91 (1) | 2.26 (1) | 3.1634 (11) | 175 (2) |
N22—H22C···Cl4iii | 0.87 (1) | 2.21 (1) | 3.0761 (11) | 172 (2) |
N22—H22A···Cl1 | 0.88 (2) | 2.28 (2) | 3.1466 (12) | 168 (2) |
N22—H22B···Cl3 | 0.87 (1) | 2.32 (2) | 3.1518 (12) | 162 (2) |
O19—H19···O9iv | 0.81 (2) | 1.91 (2) | 2.7168 (13) | 172 (2) |
O20—H20···Cl2v | 0.88 (2) | 2.48 (2) | 3.2220 (10) | 143 (2) |
O21—H21···Cl2 | 0.83 (1) | 2.39 (2) | 3.2096 (10) | 174 (2) |
N7—H7C···O20vi | 0.89 (1) | 2.05 (2) | 2.8560 (15) | 151 (2) |
N7—H7B···O19 | 0.85 (1) | 2.11 (2) | 2.9404 (14) | 164 (2) |
N7—H7A···Cl3 | 0.89 (1) | 2.70 (2) | 3.4038 (11) | 138 (1) |
O8—H8···Cl2vi | 0.84 (1) | 2.29 (2) | 3.1256 (10) | 175 (2) |
O9—H9···Cl1iv | 0.80 (2) | 2.27 (2) | 3.0144 (10) | 156 (2) |
O10—H10···Cl4vii | 0.85 (2) | 2.14 (2) | 2.9889 (10) | 177 (2) |
N11—H11C···Cl2v | 0.89 (2) | 2.37 (2) | 3.2132 (12) | 159 (2) |
N11—H11B···Cl1v | 0.86 (1) | 2.51 (2) | 3.3007 (11) | 154 (2) |
N11—H11A···Cl2 | 0.90 (2) | 2.61 (2) | 3.4618 (13) | 158 (2) |
Symmetry codes: (i) x, y+1, z; (ii) −x+1, y+1/2, −z; (iii) −x+1, y−1/2, −z; (iv) −x+1, y+1/2, −z+1; (v) −x+2, y+1/2, −z+1; (vi) x−1, y, z; (vii) −x+1, y−1/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C6H16N2O32+·2Cl− |
Mr | 235.11 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 130 |
a, b, c (Å) | 7.7899 (4), 10.1254 (5), 13.0136 (7) |
β (°) | 91.156 (2) |
V (Å3) | 1026.25 (9) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.61 |
Crystal size (mm) | 0.30 × 0.22 × 0.15 |
Data collection | |
Diffractometer | Bruker–Nonius X8 APEX KappaCCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2010) |
Tmin, Tmax | 0.838, 0.914 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16242, 4459, 4429 |
Rint | 0.017 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.017, 0.047, 1.06 |
No. of reflections | 4459 |
No. of parameters | 289 |
No. of restraints | 19 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.27, −0.15 |
Absolute structure | Flack (1983), 2093 Friedel pairs |
Absolute structure parameter | 0.01 (3) |
Computer programs: APEX2 (Bruker, 2010), SAINT (Bruker, 2010), SHELXS97 (Sheldrick, 2008), DIAMOND (Brandenburg, 2011), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N18—H18A···Cl4 | 0.893 (14) | 2.278 (14) | 3.1411 (11) | 162.5 (15) |
N18—H18B···Cl1i | 0.900 (14) | 2.365 (15) | 3.2646 (12) | 177.2 (16) |
N18—H18C···Cl3ii | 0.911 (13) | 2.255 (14) | 3.1634 (11) | 175.0 (16) |
N22—H22C···Cl4iii | 0.874 (14) | 2.208 (14) | 3.0761 (11) | 172.1 (17) |
N22—H22A···Cl1 | 0.883 (15) | 2.277 (15) | 3.1466 (12) | 168.3 (16) |
N22—H22B···Cl3 | 0.865 (14) | 2.317 (15) | 3.1518 (12) | 162.3 (16) |
O19—H19···O9iv | 0.809 (15) | 1.913 (15) | 2.7168 (13) | 172.4 (18) |
O20—H20···Cl2v | 0.878 (15) | 2.478 (17) | 3.2220 (10) | 142.9 (17) |
O21—H21···Cl2 | 0.825 (14) | 2.388 (15) | 3.2096 (10) | 174.3 (18) |
N7—H7C···O20vi | 0.890 (14) | 2.045 (15) | 2.8560 (15) | 150.8 (16) |
N7—H7B···O19 | 0.852 (14) | 2.111 (15) | 2.9404 (14) | 164.3 (16) |
N7—H7A···Cl3 | 0.885 (14) | 2.697 (16) | 3.4038 (11) | 137.6 (14) |
O8—H8···Cl2vi | 0.838 (14) | 2.290 (15) | 3.1256 (10) | 174.7 (17) |
O9—H9···Cl1iv | 0.796 (15) | 2.271 (16) | 3.0144 (10) | 155.8 (18) |
O10—H10···Cl4vii | 0.854 (15) | 2.136 (15) | 2.9889 (10) | 176.6 (19) |
N11—H11C···Cl2v | 0.885 (15) | 2.372 (16) | 3.2132 (12) | 158.8 (16) |
N11—H11B···Cl1v | 0.862 (14) | 2.505 (16) | 3.3007 (11) | 153.8 (16) |
N11—H11A···Cl2 | 0.898 (15) | 2.612 (16) | 3.4618 (13) | 158.1 (16) |
Symmetry codes: (i) x, y+1, z; (ii) −x+1, y+1/2, −z; (iii) −x+1, y−1/2, −z; (iv) −x+1, y+1/2, −z+1; (v) −x+2, y+1/2, −z+1; (vi) x−1, y, z; (vii) −x+1, y−1/2, −z+1. |
Acknowledgements
The authors thank Dr Volker Huch (Universität des Saarlandes) for the collection of the data set.
References
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The title compound contains two independent 1,3-diammonio-1,2,3-trideoxy-cis-inositol dications (denoted as cation 1 and cation 2). As already noted by Palm (1967), the cyclohexane rings of both cations adopt a chair conformation, having one hydroxy and two ammonium groups in equatorial and two hydroxy groups in axial position. The puckering parameters of the two cyclohexane rings are: Q = 0.59 Å, θ = 4.3 °, ϕ = 337.8 ° (cation 1); Q = 0.58 Å, θ = 5.0 °, ϕ = 87.0 ° (cation 2). The cations are aligned to wavy layers, oriented parallel to the ab plane, by direct cation 1···cation 2 interactions of the form N—H···O(ax), N—H···O(eq) and O(ax)—H···O(eq). In these layers, each cation of one type is interlinked with three cations of the other. In addition, cation 1···cation 1 interactions are formed by weak C—H···O hydrogen bonds between the axial oxygen atoms and two axial C—H hydrogen atoms of a neighbour (O···C distances: 3.277 and 3.215 Å, O···H distances: 2.470 and 2.485 Å, O···H—C angles 137 and 129 °). Cation 2···cation 2 hydrogen bonding is not observed. The four chloride counter ions are also involved in the extended hydrogen bonding network. Considering Cl···H distances up to 2.7 Å, Cl1 has a coordination number of four (irregular geometry). The coordination number of Cl2 is 5 and its geometry lies closer to a tetragonal pyramid than to a trigonal bipyramid (τ = 1/4). Cl3 and Cl4 have coordination numbers of three. The geometry is again irregular. All O—H and N—H groups in the two cations act as hydrogen donors, however, not all of the axial hydroxy groups act as hydrogen acceptors (if the abovementioned, weak C—H···O contacts are disregarded). This observation is in agreement with the well established concept that axial substituents are sterically more encumbered. In particular, it is of interest that no intramolecular O—H···O hydrogen bonding has been found for the axial hydroxy groups, although the corresponding O···O separations fall in the almost ideal range of 2.893 - 2.906 Å. For corresponding structures with three axial hydroxy or amino groups in a syn-1,3,5-triaxial arrangement, a different behaviour has frequently been noted (Gencheva et al., 2000; Saaidi et al., 2008; Neis et al., 2010). If a third syn-axial substituent is present, it appears that formation of such intramolecular hydrogen bonds is sometimes even a prerequisite for the adoption of a stable cyclohexane chair. Disabling of hydrogen bonding (for instance by protonation of an amino group or by converting it into an amide) enforces the structure to escape the increasing repulsion by switching to a twisted boat conformation (Fritsche-Lang et al., 1985; Kramer et al., 1998; Kuppert et al., 2006). It is thus noteworthy that in both cations of the title compound, such intramolecular O—H···O stabilisation is not required. Also in a corresponding sulphate salt (Neis et al., 2012) no intramolecular hydrogen bonding between the two axial hydroxy groups has been found.