metal-organic compounds
Di-μ-glutarato-κ4O1:O5-bis{aqua[5,6-diphenyl-3-(pyridin-2-yl)-1,2,4-triazine-κ2N2,N3]copper(II)}
aCenter of Applied Solid State Chemistry Research, Ningbo University, Ningbo 315211, People's Republic of China
*Correspondence e-mail: xuwei@nbu.edu.cn
In the centrosymmetric dinuclear title complex, [Cu2(C5H6O4)2(C20H14N4)2(H2O)2], the Cu atom displays a distorted square-pyramidal coordination environment with the basal plane occupied by two 5,6-diphenyl-3-(pyridin-2-yl)-1,2,4-triazine N atoms and two O atoms from different glutarate dianions, while a water molecule is located at the apical position. Of the two water H atoms, one is engaged in an intramolecular O—H⋯O hydrogen bond, whereas the second is engaged in an intermolecular O—H⋯O hydrogen bond. The intermolecular hydrogen bonds lead to the formation of a chain along [010].
Related literature
For the biological activity and applications of triazines, see: Garcia et al. (1995); Mashaly et al. (1999); Soudi et al. (2005).
Experimental
Crystal data
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Refinement
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Data collection: RAPID-AUTO (Rigaku, 1998); cell RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536812022969/ff2069sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812022969/ff2069Isup2.hkl
Addition of 2.0 mL (1.0 M) NaOH to a stirred aqueous of 0.172 g (1.0 mmol) CuCl2.2H2O in 5.0 mL H2O yield a blue precipitate, which was then separated by centrifugation, followed by washing with double-distilled water until no detectable Cl- anions in supernatant. The precipitate was added to a stirred ethanolic aqueous solution of 0.132 g (1.0 mmol) glutaric acid in 20 mL EtOH/H2O (v:v = 1: 1). To the resulting suspension was added 0.310 g (1.0 mmol) 3-(2-pyridyl)-5,6-diphenyl-1,2,4- triazine (PDPT). The mixture was further stirred for approximately 15 min and the insoluble solid was filtered off. The filtrate (pH = 6.3) was allowed to stand at room temperature. Slow evaporation for two weeks afforded a small amount of brown crystals (yield 62% based on the initial CuCl2.2H2O input).
All H atoms bound to C were position geometrically and refined as riding, with C-H = 0.93 Å and Uiso(H) = 1.2Ueq(C). H atoms attached to O were located in difference Fourier maps and placed at fixed positions with Uiso(H) = 1.5Ueq(O).
Data collection: RAPID-AUTO (Rigaku, 1998); cell
RAPID-AUTO (Rigaku, 1998); data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).[Cu2(C5H6O4)2(C20H14N4)2(H2O)2] | Z = 1 |
Mr = 1044.01 | F(000) = 538 |
Triclinic, P1 | Dx = 1.526 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.4297 (19) Å | Cell parameters from 8151 reflections |
b = 10.429 (2) Å | θ = 3.3–27.5° |
c = 12.471 (3) Å | µ = 1.01 mm−1 |
α = 81.37 (3)° | T = 295 K |
β = 71.00 (3)° | Block, brown |
γ = 79.83 (3)° | 0.21 × 0.13 × 0.11 mm |
V = 1135.7 (4) Å3 |
Rigaku R-AXIS RAPID diffractometer | 5148 independent reflections |
Radiation source: fine-focus sealed tube | 3478 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.046 |
ω scans | θmax = 27.5°, θmin = 3.3° |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | h = −12→11 |
Tmin = 0.732, Tmax = 0.854 | k = −13→13 |
11269 measured reflections | l = −16→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.107 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0413P)2 + 0.453P] where P = (Fo2 + 2Fc2)/3 |
5148 reflections | (Δ/σ)max < 0.001 |
324 parameters | Δρmax = 0.39 e Å−3 |
3 restraints | Δρmin = −0.36 e Å−3 |
[Cu2(C5H6O4)2(C20H14N4)2(H2O)2] | γ = 79.83 (3)° |
Mr = 1044.01 | V = 1135.7 (4) Å3 |
Triclinic, P1 | Z = 1 |
a = 9.4297 (19) Å | Mo Kα radiation |
b = 10.429 (2) Å | µ = 1.01 mm−1 |
c = 12.471 (3) Å | T = 295 K |
α = 81.37 (3)° | 0.21 × 0.13 × 0.11 mm |
β = 71.00 (3)° |
Rigaku R-AXIS RAPID diffractometer | 5148 independent reflections |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | 3478 reflections with I > 2σ(I) |
Tmin = 0.732, Tmax = 0.854 | Rint = 0.046 |
11269 measured reflections |
R[F2 > 2σ(F2)] = 0.048 | 3 restraints |
wR(F2) = 0.107 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.39 e Å−3 |
5148 reflections | Δρmin = −0.36 e Å−3 |
324 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2s˘F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cu1 | 0.26103 (4) | 0.21246 (4) | 0.03910 (3) | 0.03895 (13) | |
N1 | 0.1594 (3) | 0.0660 (2) | 0.1459 (2) | 0.0330 (6) | |
N2 | −0.0584 (3) | −0.0381 (2) | 0.2006 (2) | 0.0330 (5) | |
N3 | 0.2040 (3) | −0.0002 (2) | 0.2326 (2) | 0.0344 (6) | |
N4 | 0.0601 (3) | 0.2406 (2) | 0.0055 (2) | 0.0343 (6) | |
C1 | 0.0116 (4) | 0.3395 (3) | −0.0620 (3) | 0.0426 (8) | |
H1A | 0.0752 | 0.4015 | −0.1005 | 0.051* | |
C2 | −0.1298 (4) | 0.3518 (3) | −0.0763 (3) | 0.0455 (8) | |
H2A | −0.1617 | 0.4225 | −0.1220 | 0.055* | |
C3 | −0.2222 (4) | 0.2590 (3) | −0.0225 (3) | 0.0454 (8) | |
H3A | −0.3162 | 0.2643 | −0.0333 | 0.054* | |
C4 | −0.1745 (3) | 0.1563 (3) | 0.0488 (3) | 0.0382 (7) | |
H4A | −0.2355 | 0.0922 | 0.0866 | 0.046* | |
C5 | −0.0341 (3) | 0.1529 (3) | 0.0614 (2) | 0.0310 (6) | |
C6 | −0.2356 (4) | −0.2275 (3) | 0.3326 (3) | 0.0444 (8) | |
H6A | −0.2892 | −0.1488 | 0.3128 | 0.053* | |
C7 | −0.3058 (4) | −0.3385 (3) | 0.3674 (3) | 0.0526 (9) | |
H7A | −0.4070 | −0.3343 | 0.3723 | 0.063* | |
C8 | −0.2255 (4) | −0.4556 (3) | 0.3950 (3) | 0.0569 (10) | |
H8A | −0.2729 | −0.5305 | 0.4188 | 0.068* | |
C9 | −0.0753 (4) | −0.4623 (3) | 0.3875 (3) | 0.0515 (9) | |
H9A | −0.0211 | −0.5422 | 0.4042 | 0.062* | |
C10 | −0.0055 (4) | −0.3516 (3) | 0.3553 (3) | 0.0418 (7) | |
H10A | 0.0950 | −0.3563 | 0.3527 | 0.050* | |
C11 | −0.0842 (3) | −0.2325 (3) | 0.3268 (2) | 0.0333 (6) | |
C12 | 0.0555 (3) | −0.1686 (3) | 0.5118 (2) | 0.0361 (7) | |
H12A | −0.0422 | −0.1744 | 0.5128 | 0.043* | |
C13 | 0.0940 (4) | −0.2000 (3) | 0.6113 (3) | 0.0417 (7) | |
H13A | 0.0231 | −0.2286 | 0.6783 | 0.050* | |
C14 | 0.2369 (4) | −0.1892 (3) | 0.6114 (3) | 0.0481 (8) | |
H14A | 0.2627 | −0.2096 | 0.6785 | 0.058* | |
C15 | 0.3421 (4) | −0.1479 (4) | 0.5119 (3) | 0.0546 (9) | |
H15A | 0.4387 | −0.1401 | 0.5122 | 0.066* | |
C16 | 0.3054 (4) | −0.1181 (3) | 0.4117 (3) | 0.0454 (8) | |
H16A | 0.3776 | −0.0912 | 0.3449 | 0.055* | |
C17 | 0.1608 (3) | −0.1282 (3) | 0.4101 (2) | 0.0316 (6) | |
C18 | 0.0238 (3) | 0.0544 (3) | 0.1407 (2) | 0.0297 (6) | |
C19 | −0.0076 (3) | −0.1168 (3) | 0.2792 (2) | 0.0311 (6) | |
C20 | 0.1183 (3) | −0.0840 (3) | 0.3047 (2) | 0.0306 (6) | |
O1 | 0.4086 (2) | 0.2035 (2) | 0.1224 (2) | 0.0458 (6) | |
O2 | 0.2028 (3) | 0.3259 (2) | 0.2159 (2) | 0.0537 (6) | |
O3 | 0.4585 (3) | 0.7023 (2) | 0.1841 (2) | 0.0575 (7) | |
O4 | 0.6779 (3) | 0.6339 (2) | 0.0591 (2) | 0.0519 (6) | |
O5 | 0.4157 (3) | 0.0709 (2) | −0.1009 (2) | 0.0601 (7) | |
H5A | 0.473 (4) | 0.128 (3) | −0.128 (4) | 0.090* | |
H5B | 0.467 (4) | 0.000 (2) | −0.093 (4) | 0.090* | |
C21 | 0.3332 (4) | 0.2717 (3) | 0.2053 (3) | 0.0422 (8) | |
C22 | 0.4083 (4) | 0.2896 (3) | 0.2916 (3) | 0.0541 (10) | |
H22A | 0.5054 | 0.2342 | 0.2774 | 0.065* | |
H22B | 0.3456 | 0.2632 | 0.3677 | 0.065* | |
C23 | 0.4318 (4) | 0.4324 (4) | 0.2839 (3) | 0.0515 (9) | |
H23A | 0.3353 | 0.4882 | 0.2947 | 0.062* | |
H23B | 0.4718 | 0.4435 | 0.3439 | 0.062* | |
C24 | 0.5395 (4) | 0.4723 (3) | 0.1702 (3) | 0.0547 (9) | |
H24A | 0.5087 | 0.4428 | 0.1121 | 0.066* | |
H24B | 0.6389 | 0.4250 | 0.1668 | 0.066* | |
C25 | 0.5562 (4) | 0.6169 (3) | 0.1380 (3) | 0.0383 (7) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.0377 (2) | 0.0393 (2) | 0.0407 (2) | −0.01605 (15) | −0.01249 (17) | 0.00743 (16) |
N1 | 0.0349 (13) | 0.0321 (12) | 0.0342 (13) | −0.0096 (10) | −0.0136 (11) | 0.0028 (11) |
N2 | 0.0334 (13) | 0.0313 (12) | 0.0362 (13) | −0.0074 (10) | −0.0131 (11) | −0.0003 (11) |
N3 | 0.0330 (13) | 0.0361 (13) | 0.0357 (13) | −0.0087 (10) | −0.0127 (11) | 0.0014 (11) |
N4 | 0.0376 (14) | 0.0326 (13) | 0.0325 (12) | −0.0060 (10) | −0.0113 (11) | −0.0001 (11) |
C1 | 0.052 (2) | 0.0377 (16) | 0.0359 (16) | −0.0070 (14) | −0.0128 (15) | 0.0029 (14) |
C2 | 0.051 (2) | 0.0442 (18) | 0.0381 (17) | 0.0055 (15) | −0.0174 (16) | −0.0014 (15) |
C3 | 0.0375 (18) | 0.053 (2) | 0.0462 (19) | 0.0056 (15) | −0.0189 (15) | −0.0073 (16) |
C4 | 0.0360 (17) | 0.0423 (17) | 0.0371 (16) | −0.0046 (13) | −0.0120 (14) | −0.0061 (14) |
C5 | 0.0332 (15) | 0.0309 (14) | 0.0284 (14) | −0.0045 (11) | −0.0086 (12) | −0.0028 (12) |
C6 | 0.0412 (18) | 0.0360 (16) | 0.055 (2) | −0.0099 (13) | −0.0131 (16) | −0.0014 (15) |
C7 | 0.046 (2) | 0.0472 (19) | 0.067 (2) | −0.0210 (15) | −0.0135 (18) | −0.0054 (18) |
C8 | 0.073 (3) | 0.0388 (18) | 0.062 (2) | −0.0278 (17) | −0.017 (2) | 0.0009 (17) |
C9 | 0.073 (3) | 0.0304 (16) | 0.058 (2) | −0.0110 (16) | −0.0304 (19) | 0.0029 (16) |
C10 | 0.0498 (19) | 0.0331 (16) | 0.0473 (18) | −0.0065 (13) | −0.0217 (15) | −0.0026 (14) |
C11 | 0.0386 (16) | 0.0293 (14) | 0.0331 (15) | −0.0109 (12) | −0.0100 (13) | −0.0013 (12) |
C12 | 0.0342 (16) | 0.0336 (15) | 0.0413 (16) | −0.0096 (12) | −0.0101 (13) | −0.0041 (13) |
C13 | 0.053 (2) | 0.0388 (17) | 0.0305 (15) | −0.0071 (14) | −0.0076 (14) | −0.0052 (13) |
C14 | 0.051 (2) | 0.059 (2) | 0.0343 (17) | 0.0001 (16) | −0.0182 (16) | −0.0040 (16) |
C15 | 0.0378 (19) | 0.080 (3) | 0.050 (2) | −0.0037 (17) | −0.0206 (16) | −0.0063 (19) |
C16 | 0.0348 (17) | 0.062 (2) | 0.0388 (17) | −0.0088 (15) | −0.0104 (14) | −0.0010 (16) |
C17 | 0.0300 (15) | 0.0293 (14) | 0.0350 (15) | −0.0025 (11) | −0.0108 (12) | −0.0015 (12) |
C18 | 0.0308 (15) | 0.0294 (14) | 0.0315 (14) | −0.0084 (11) | −0.0103 (12) | −0.0041 (12) |
C19 | 0.0286 (14) | 0.0293 (14) | 0.0329 (15) | −0.0028 (11) | −0.0065 (12) | −0.0041 (12) |
C20 | 0.0297 (15) | 0.0280 (14) | 0.0338 (15) | −0.0038 (11) | −0.0100 (12) | −0.0020 (12) |
O1 | 0.0388 (13) | 0.0461 (13) | 0.0538 (14) | −0.0164 (10) | −0.0141 (11) | 0.0035 (11) |
O2 | 0.0437 (14) | 0.0599 (15) | 0.0596 (15) | −0.0101 (11) | −0.0165 (12) | −0.0073 (12) |
O3 | 0.0535 (15) | 0.0505 (14) | 0.0608 (16) | −0.0128 (12) | −0.0060 (13) | −0.0016 (13) |
O4 | 0.0501 (14) | 0.0419 (13) | 0.0554 (14) | −0.0158 (10) | −0.0077 (12) | 0.0120 (11) |
O5 | 0.0492 (15) | 0.0468 (14) | 0.0747 (18) | −0.0111 (11) | −0.0043 (14) | −0.0046 (14) |
C21 | 0.0413 (19) | 0.0382 (17) | 0.0478 (19) | −0.0208 (14) | −0.0125 (16) | 0.0093 (16) |
C22 | 0.067 (2) | 0.053 (2) | 0.053 (2) | −0.0325 (18) | −0.0311 (19) | 0.0170 (18) |
C23 | 0.058 (2) | 0.060 (2) | 0.0416 (18) | −0.0298 (17) | −0.0155 (17) | 0.0042 (17) |
C24 | 0.059 (2) | 0.048 (2) | 0.052 (2) | −0.0224 (17) | −0.0028 (18) | −0.0015 (17) |
C25 | 0.0393 (18) | 0.0438 (18) | 0.0355 (16) | −0.0180 (14) | −0.0130 (15) | 0.0026 (14) |
Cu1—O1 | 1.973 (2) | C11—C19 | 1.463 (4) |
Cu1—O4i | 1.917 (2) | C12—C13 | 1.381 (4) |
Cu1—O5 | 2.390 (3) | C12—C17 | 1.392 (4) |
Cu1—N1 | 2.025 (2) | C12—H12A | 0.9300 |
Cu1—N4 | 2.033 (2) | C13—C14 | 1.373 (5) |
N1—C18 | 1.328 (3) | C13—H13A | 0.9300 |
N1—N3 | 1.340 (3) | C14—C15 | 1.377 (5) |
N2—C18 | 1.326 (3) | C14—H14A | 0.9300 |
N2—C19 | 1.338 (3) | C15—C16 | 1.380 (4) |
N3—C20 | 1.328 (3) | C15—H15A | 0.9300 |
N4—C5 | 1.343 (3) | C16—C17 | 1.392 (4) |
N4—C1 | 1.344 (3) | C16—H16A | 0.9300 |
C1—C2 | 1.384 (4) | C17—C20 | 1.483 (4) |
C1—H1A | 0.9300 | C19—C20 | 1.432 (4) |
C2—C3 | 1.367 (5) | O1—C21 | 1.282 (4) |
C2—H2A | 0.9300 | O2—C21 | 1.233 (4) |
C3—C4 | 1.395 (4) | O3—C25 | 1.221 (4) |
C3—H3A | 0.9300 | O4—C25 | 1.265 (4) |
C4—C5 | 1.377 (4) | O4—Cu1i | 1.917 (2) |
C4—H4A | 0.9300 | O5—H5A | 0.837 (18) |
C5—C18 | 1.477 (4) | O5—H5B | 0.822 (18) |
C6—C7 | 1.378 (4) | C21—C22 | 1.516 (5) |
C6—C11 | 1.397 (4) | C22—C23 | 1.528 (5) |
C6—H6A | 0.9300 | C22—H22A | 0.9700 |
C7—C8 | 1.379 (5) | C22—H22B | 0.9700 |
C7—H7A | 0.9300 | C23—C24 | 1.500 (4) |
C8—C9 | 1.378 (5) | C23—H23A | 0.9700 |
C8—H8A | 0.9300 | C23—H23B | 0.9700 |
C9—C10 | 1.373 (4) | C24—C25 | 1.524 (4) |
C9—H9A | 0.9300 | C24—H24A | 0.9700 |
C10—C11 | 1.391 (4) | C24—H24B | 0.9700 |
C10—H10A | 0.9300 | ||
O1—Cu1—O5 | 96.54 (10) | C14—C13—C12 | 120.0 (3) |
O1—Cu1—N1 | 92.09 (9) | C14—C13—H13A | 120.0 |
O1—Cu1—N4 | 160.23 (10) | C12—C13—H13A | 120.0 |
O4i—Cu1—O1 | 95.02 (10) | C13—C14—C15 | 119.9 (3) |
O4i—Cu1—O5 | 92.28 (10) | C13—C14—H14A | 120.1 |
O4i—Cu1—N1 | 170.00 (10) | C15—C14—H14A | 120.1 |
O4i—Cu1—N4 | 91.32 (10) | C14—C15—C16 | 120.6 (3) |
N1—Cu1—O5 | 93.89 (10) | C14—C15—H15A | 119.7 |
N1—Cu1—N4 | 79.71 (9) | C16—C15—H15A | 119.7 |
N4—Cu1—O5 | 101.91 (10) | C15—C16—C17 | 120.3 (3) |
C18—N1—N3 | 118.5 (2) | C15—C16—H16A | 119.8 |
C18—N1—Cu1 | 115.24 (17) | C17—C16—H16A | 119.8 |
N3—N1—Cu1 | 124.94 (18) | C12—C17—C16 | 118.2 (3) |
C18—N2—C19 | 117.5 (2) | C12—C17—C20 | 121.7 (3) |
C20—N3—N1 | 119.3 (2) | C16—C17—C20 | 119.8 (3) |
C5—N4—C1 | 118.0 (3) | N2—C18—N1 | 124.4 (2) |
C5—N4—Cu1 | 115.18 (18) | N2—C18—C5 | 120.0 (2) |
C1—N4—Cu1 | 126.7 (2) | N1—C18—C5 | 115.6 (2) |
N4—C1—C2 | 122.1 (3) | N2—C19—C20 | 117.8 (2) |
N4—C1—H1A | 118.9 | N2—C19—C11 | 115.4 (3) |
C2—C1—H1A | 118.9 | C20—C19—C11 | 126.7 (2) |
C3—C2—C1 | 119.2 (3) | N3—C20—C19 | 119.5 (2) |
C3—C2—H2A | 120.4 | N3—C20—C17 | 114.0 (2) |
C1—C2—H2A | 120.4 | C19—C20—C17 | 126.3 (2) |
C2—C3—C4 | 119.5 (3) | C21—O1—Cu1 | 102.07 (19) |
C2—C3—H3A | 120.3 | C25—O4—Cu1i | 130.7 (2) |
C4—C3—H3A | 120.3 | Cu1—O5—H5A | 89 (3) |
C5—C4—C3 | 117.8 (3) | Cu1—O5—H5B | 130 (3) |
C5—C4—H4A | 121.1 | H5A—O5—H5B | 109 (3) |
C3—C4—H4A | 121.1 | O2—C21—O1 | 122.3 (3) |
N4—C5—C4 | 123.2 (3) | O2—C21—C22 | 118.8 (3) |
N4—C5—C18 | 114.2 (2) | O1—C21—C22 | 118.9 (3) |
C4—C5—C18 | 122.6 (3) | C21—C22—C23 | 110.7 (3) |
C7—C6—C11 | 120.4 (3) | C21—C22—H22A | 109.5 |
C7—C6—H6A | 119.8 | C23—C22—H22A | 109.5 |
C11—C6—H6A | 119.8 | C21—C22—H22B | 109.5 |
C6—C7—C8 | 119.8 (3) | C23—C22—H22B | 109.5 |
C6—C7—H7A | 120.1 | H22A—C22—H22B | 108.1 |
C8—C7—H7A | 120.1 | C24—C23—C22 | 110.6 (3) |
C9—C8—C7 | 120.4 (3) | C24—C23—H23A | 109.5 |
C9—C8—H8A | 119.8 | C22—C23—H23A | 109.5 |
C7—C8—H8A | 119.8 | C24—C23—H23B | 109.5 |
C10—C9—C8 | 120.2 (3) | C22—C23—H23B | 109.5 |
C10—C9—H9A | 119.9 | H23A—C23—H23B | 108.1 |
C8—C9—H9A | 119.9 | C23—C24—C25 | 118.4 (3) |
C9—C10—C11 | 120.3 (3) | C23—C24—H24A | 107.7 |
C9—C10—H10A | 119.8 | C25—C24—H24A | 107.7 |
C11—C10—H10A | 119.8 | C23—C24—H24B | 107.7 |
C10—C11—C6 | 118.8 (3) | C25—C24—H24B | 107.7 |
C10—C11—C19 | 121.3 (3) | H24A—C24—H24B | 107.1 |
C6—C11—C19 | 119.5 (3) | O3—C25—O4 | 126.5 (3) |
C13—C12—C17 | 121.0 (3) | O3—C25—C24 | 121.5 (3) |
C13—C12—H12A | 119.5 | O4—C25—C24 | 111.9 (3) |
C17—C12—H12A | 119.5 |
Symmetry code: (i) −x+1, −y+1, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5A···O3i | 0.84 | 1.94 | 2.744 (3) | 161 |
O5—H5B···O1ii | 0.82 | 2.25 | 3.045 (3) | 162 |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) −x+1, −y, −z. |
Experimental details
Crystal data | |
Chemical formula | [Cu2(C5H6O4)2(C20H14N4)2(H2O)2] |
Mr | 1044.01 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 295 |
a, b, c (Å) | 9.4297 (19), 10.429 (2), 12.471 (3) |
α, β, γ (°) | 81.37 (3), 71.00 (3), 79.83 (3) |
V (Å3) | 1135.7 (4) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 1.01 |
Crystal size (mm) | 0.21 × 0.13 × 0.11 |
Data collection | |
Diffractometer | Rigaku R-AXIS RAPID diffractometer |
Absorption correction | Multi-scan (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.732, 0.854 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11269, 5148, 3478 |
Rint | 0.046 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.107, 1.03 |
No. of reflections | 5148 |
No. of parameters | 324 |
No. of restraints | 3 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.39, −0.36 |
Computer programs: RAPID-AUTO (Rigaku, 1998), CrystalStructure (Rigaku/MSC, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
Cu1—O1 | 1.973 (2) | Cu1—N1 | 2.025 (2) |
Cu1—O4i | 1.917 (2) | Cu1—N4 | 2.033 (2) |
Cu1—O5 | 2.390 (3) |
Symmetry code: (i) −x+1, −y+1, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5A···O3i | 0.84 | 1.94 | 2.744 (3) | 161 |
O5—H5B···O1ii | 0.82 | 2.25 | 3.045 (3) | 162 |
Symmetry codes: (i) −x+1, −y+1, −z; (ii) −x+1, −y, −z. |
Acknowledgements
The project was sponsored by the K. C. Wong Magna Fund in Ningbo University.
References
Garcia, G., Solano, I., Sanchez, G. & Lopez, G. (1995). Polyhedron, 14, 1855–1863. CSD CrossRef CAS Web of Science Google Scholar
Higashi, T. (1995). ABSCOR. Rigaku Corporation, Tokyo, Japan. Google Scholar
Mashaly, M., Bayoumi, H. A. & Taha, A. (1999). J. Serb. Chem. Soc. 64, 621–635. CAS Google Scholar
Rigaku (1998). RAPID-AUTO. Rigaku Corporation, Tokyo, Japan. Google Scholar
Rigaku/MSC (2004). CrystalStructure. Rigaku/MSC Inc., The Woodlands, Texas, USA. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Soudi, A. A., Marandi, F., Morsali, A., Kempe, R. & Hertle, I. (2005). J. Coord. Chem. 58, 1631–1637. Web of Science CSD CrossRef CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Numerous compounds containing 1,2,4-triazine moieties are well known in natural materials and show interesting biological, pharmacological and medicinal properties (Garcia et al., 1995). In particularly, the ligand 3-(2-pyridyl)-5,6-diphenyl-1,2,4-triazine (PDPT) exhibits interesting properties such as blood platelet aggregation inhibition, antiviral and anticancer (leukemia and ovarian) and anti-HIV activity (Mashaly et al., 1999; Soudi et al., 2005). The title complex, (I), was recently prepared and its crystal structure is reported here.
The title compound crystal structure is composed of centrosymmetric dinuclear [Cu2(H2O)2(PDPT)2(C5H6O4)2] complex molecule (Fig. 1). The dinuclear complex molecules are centered at the crystallographic 1e positions. Each Cu atom is coordinated to two N atoms of the chelating PDPT ligand and three O atoms of one H2O molecule and two bis-monodentate glutarato ligands to form a slightly distorted square-pyramidal coordination with H2O molecule located at the apical position (d(Cu-N) = 2.024 (2), 2.033 (2) Å, the basal d(Cu-O) = 1.917 (2), 1.973 (2) Å, the axial d(Cu-O) = 2.390 (3) Å). Through the glutarato ligands, the square-pyramidally coordinated Cu atoms are linked to form a centrosymmetric dinuclear complex. As expected, the Cu atom is shifted toward the apical water O atom by 0.209 (1) Å from the least-squares plane defined by the four equatorial coordinating atoms. The triazine ring adopts a slight twist conformation. The dihedral angle between the two phenyl rings is 61.0 (1)°.
As shown in the Fig. 2, within the crystal structure, the water molecule O5 forms a strong intramolecular hydrogen bond to the uncoordinated carboxyl O3#1 (#1 = -x+1, -y+1, -z) with d(O···O) = 2.744 (3) Å and O5-H5A···O3#1 = 161°. Moreover, it forms an intermolecular hydrogen bond to the coordinated carboxyl O1#2 (#2 = -x+1, -y, -z) atoms (d(O···O) = 3.045 (3) Å and O5-H5B···O1#2 = 162°) to connect the dinuclear complexes along the [010] direction.