organic compounds
Ethyl 2-methyl-6-(propan-2-ylamino)-4-sulfanylidene-3H,11H-pyrimido[1,6-c]quinazoline-1-carboxylate
aCollege of Science, Naval University of Engineering, Wuhan 430033, People's Republic of China, and bInstitute of Medicinal Chemistry, Hubei University of Medicine, Shi Yan 442000, People's Republic of China
*Correspondence e-mail: meirwang@126.com
The title compound, C18H22N4O2S, contains a substituted pyrimidine ring fused to both a benzene ring and a substituted thioxopyrimidine ring. The pyrimidine and thioxopyrimidine rings adopt distorted chair conformations. In the crystal, adjacent molecules are linked by pairs of N—H⋯S and N—H⋯O hydrogen bonds to generate centrosymmetric R22(8) and R22(16) loops, respectively. This combination leads to [100] chains of molecules.
Related literature
For further synthetic details, see: Li et al. (2007, 2008); Huang et al. (2009); Zeng et al. (2010). For a related structure, see: Li et al. (2010). For ring conformations, see: Cremer & Pople (1975).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2001); cell SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
Supporting information
10.1107/S1600536812019952/hb6711sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812019952/hb6711Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812019952/hb6711Isup3.cml
To a solution of iminophosphorane prepared according to Li et al. (2010) (0.55 g, 1 mmol) in CH3CN (10 mL) was added phenylisocyanate (0.12 g, 1 mmol) under nitrogen at room temperature. After stirred for 2 h at room temperature, K2CO3 (0.014 g,0.1 mmol) was added and the mixture was stirred for 1 h. The solvent was removed off under reduced pressure and the residue was recrystallized from methylene dichloride and ethanol to give the title compound (I) in yield of 85% (m.p. 490 K). Colourless blocks were obtained from a dichloromethane solution at room temperature.
The H atoms attached to atoms N2 and N4 was located in a difference Fourier map and allowed to ride on their parent atom with a restraint of N—H = 0.86 Å. Other H atoms were placed at calculated positions and treated as riding atoms, with C—H = 0.96–0.97 Å, and Uiso(H) = 1.2 Ueq(C) or 1.5 Ueq(C) for methyl H atoms.
Data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. View of the molecule showing displacement ellipsoids drawn at the 50% probability level. |
C18H22N4O2S | F(000) = 760.0 |
Mr = 358.46 | Dx = 1.288 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 4329 reflections |
a = 9.4128 (3) Å | θ = 2.2–27.7° |
b = 10.5636 (5) Å | µ = 0.19 mm−1 |
c = 19.2052 (6) Å | T = 298 K |
β = 102.347 (1)° | Block, colorless |
V = 1865.46 (12) Å3 | 0.30 × 0.20 × 0.20 mm |
Z = 4 |
Bruker SMART CCD diffractometer | 3857 independent reflections |
Radiation source: fine-focus sealed tube | 3014 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.076 |
ϕ and ω scans | θmax = 26.5°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −11→11 |
Tmin = 0.955, Tmax = 0.962 | k = −13→10 |
12093 measured reflections | l = −24→24 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.050 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.139 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0772P)2 + 0.1069P] where P = (Fo2 + 2Fc2)/3 |
3857 reflections | (Δ/σ)max = 0.025 |
236 parameters | Δρmax = 0.34 e Å−3 |
2 restraints | Δρmin = −0.27 e Å−3 |
C18H22N4O2S | V = 1865.46 (12) Å3 |
Mr = 358.46 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 9.4128 (3) Å | µ = 0.19 mm−1 |
b = 10.5636 (5) Å | T = 298 K |
c = 19.2052 (6) Å | 0.30 × 0.20 × 0.20 mm |
β = 102.347 (1)° |
Bruker SMART CCD diffractometer | 3857 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 3014 reflections with I > 2σ(I) |
Tmin = 0.955, Tmax = 0.962 | Rint = 0.076 |
12093 measured reflections |
R[F2 > 2σ(F2)] = 0.050 | 2 restraints |
wR(F2) = 0.139 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.34 e Å−3 |
3857 reflections | Δρmin = −0.27 e Å−3 |
236 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.09011 (18) | 0.72990 (17) | 0.84262 (9) | 0.0364 (4) | |
C2 | 0.0719 (2) | 0.67844 (18) | 0.77505 (10) | 0.0462 (5) | |
H2 | 0.0294 | 0.5991 | 0.7656 | 0.055* | |
C3 | 0.1170 (3) | 0.7450 (2) | 0.72128 (10) | 0.0570 (6) | |
H3 | 0.1042 | 0.7107 | 0.6758 | 0.068* | |
C4 | 0.1809 (3) | 0.8623 (2) | 0.73568 (11) | 0.0558 (6) | |
H4 | 0.2120 | 0.9067 | 0.6998 | 0.067* | |
C5 | 0.1991 (2) | 0.91431 (19) | 0.80297 (10) | 0.0494 (5) | |
H5 | 0.2422 | 0.9935 | 0.8120 | 0.059* | |
C6 | 0.1535 (2) | 0.84940 (17) | 0.85729 (9) | 0.0380 (4) | |
C7 | 0.17531 (19) | 0.83292 (16) | 0.97816 (9) | 0.0348 (4) | |
C8 | 0.04635 (19) | 0.66650 (16) | 0.90571 (9) | 0.0345 (4) | |
H8 | −0.0437 | 0.7061 | 0.9126 | 0.041* | |
C9 | 0.2171 (2) | 1.00033 (18) | 1.06939 (10) | 0.0466 (5) | |
H9 | 0.1470 | 1.0559 | 1.0387 | 0.056* | |
C10 | 0.1933 (3) | 1.0103 (2) | 1.14433 (12) | 0.0612 (6) | |
H10A | 0.0963 | 0.9833 | 1.1453 | 0.092* | |
H10B | 0.2063 | 1.0965 | 1.1601 | 0.092* | |
H10C | 0.2621 | 0.9573 | 1.1753 | 0.092* | |
C11 | 0.3679 (3) | 1.0396 (2) | 1.06328 (15) | 0.0795 (8) | |
H11A | 0.4385 | 0.9897 | 1.0953 | 0.119* | |
H11B | 0.3823 | 1.1275 | 1.0754 | 0.119* | |
H11C | 0.3791 | 1.0265 | 1.0153 | 0.119* | |
C12 | 0.28831 (19) | 0.62791 (16) | 0.97962 (9) | 0.0343 (4) | |
C13 | 0.13802 (19) | 0.44969 (16) | 0.92654 (9) | 0.0363 (4) | |
C14 | 0.02360 (19) | 0.52521 (16) | 0.90196 (9) | 0.0355 (4) | |
C15 | 0.1435 (2) | 0.30767 (17) | 0.92606 (12) | 0.0502 (5) | |
H15A | 0.1103 | 0.2753 | 0.9665 | 0.075* | |
H15B | 0.2417 | 0.2804 | 0.9284 | 0.075* | |
H15C | 0.0821 | 0.2765 | 0.8830 | 0.075* | |
C16 | −0.1233 (2) | 0.47530 (18) | 0.87161 (9) | 0.0404 (4) | |
C17 | −0.3692 (2) | 0.5353 (2) | 0.82596 (12) | 0.0552 (5) | |
H17A | −0.4100 | 0.4905 | 0.8612 | 0.066* | |
H17B | −0.3745 | 0.4806 | 0.7849 | 0.066* | |
C18 | −0.4504 (3) | 0.6539 (3) | 0.8048 (2) | 0.0979 (11) | |
H18A | −0.4431 | 0.7077 | 0.8457 | 0.147* | |
H18B | −0.5508 | 0.6345 | 0.7856 | 0.147* | |
H18C | −0.4101 | 0.6966 | 0.7693 | 0.147* | |
S1 | 0.44958 (5) | 0.68615 (5) | 1.01900 (3) | 0.04898 (19) | |
N1 | 0.16807 (17) | 0.90727 (14) | 0.92474 (8) | 0.0399 (4) | |
N2 | 0.18611 (17) | 0.86974 (14) | 1.04561 (8) | 0.0387 (4) | |
H2A | 0.191 (2) | 0.8115 (14) | 1.0774 (8) | 0.046* | |
N3 | 0.16359 (15) | 0.69732 (13) | 0.96840 (7) | 0.0326 (3) | |
N4 | 0.27056 (16) | 0.50620 (14) | 0.95704 (8) | 0.0393 (4) | |
H4A | 0.3503 (15) | 0.4619 (16) | 0.9646 (10) | 0.047* | |
O1 | −0.21898 (14) | 0.57011 (13) | 0.85569 (8) | 0.0525 (4) | |
O2 | −0.15658 (16) | 0.36556 (14) | 0.86187 (8) | 0.0569 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0333 (9) | 0.0385 (10) | 0.0363 (9) | 0.0059 (8) | 0.0045 (7) | 0.0066 (7) |
C2 | 0.0516 (12) | 0.0455 (11) | 0.0392 (10) | 0.0030 (9) | 0.0045 (9) | 0.0016 (8) |
C3 | 0.0744 (15) | 0.0612 (14) | 0.0352 (10) | 0.0142 (12) | 0.0113 (10) | 0.0055 (9) |
C4 | 0.0695 (15) | 0.0559 (13) | 0.0460 (11) | 0.0109 (11) | 0.0215 (10) | 0.0180 (10) |
C5 | 0.0567 (13) | 0.0425 (11) | 0.0509 (11) | 0.0035 (9) | 0.0163 (10) | 0.0131 (9) |
C6 | 0.0387 (10) | 0.0348 (10) | 0.0401 (9) | 0.0068 (8) | 0.0077 (8) | 0.0051 (7) |
C7 | 0.0306 (9) | 0.0329 (9) | 0.0409 (9) | 0.0019 (7) | 0.0077 (7) | −0.0004 (7) |
C8 | 0.0298 (8) | 0.0366 (10) | 0.0357 (8) | 0.0006 (7) | 0.0041 (7) | 0.0004 (7) |
C9 | 0.0554 (12) | 0.0361 (10) | 0.0481 (11) | 0.0040 (9) | 0.0107 (9) | −0.0051 (8) |
C10 | 0.0690 (15) | 0.0603 (14) | 0.0544 (12) | 0.0072 (12) | 0.0140 (11) | −0.0168 (10) |
C11 | 0.0865 (19) | 0.0674 (17) | 0.0933 (19) | −0.0312 (14) | 0.0387 (16) | −0.0277 (14) |
C12 | 0.0369 (9) | 0.0324 (9) | 0.0338 (8) | 0.0020 (7) | 0.0077 (7) | 0.0034 (7) |
C13 | 0.0379 (10) | 0.0346 (9) | 0.0379 (9) | −0.0025 (7) | 0.0113 (7) | 0.0015 (7) |
C14 | 0.0362 (9) | 0.0358 (10) | 0.0348 (9) | −0.0028 (7) | 0.0085 (7) | 0.0006 (7) |
C15 | 0.0483 (12) | 0.0375 (11) | 0.0662 (13) | −0.0022 (9) | 0.0150 (10) | 0.0009 (9) |
C16 | 0.0414 (10) | 0.0440 (11) | 0.0356 (9) | −0.0047 (9) | 0.0074 (8) | 0.0039 (8) |
C17 | 0.0373 (11) | 0.0642 (14) | 0.0587 (12) | −0.0093 (10) | −0.0021 (9) | −0.0010 (10) |
C18 | 0.0541 (16) | 0.0719 (18) | 0.148 (3) | 0.0067 (13) | −0.0231 (17) | −0.0301 (18) |
S1 | 0.0332 (3) | 0.0401 (3) | 0.0684 (4) | 0.00183 (19) | −0.0007 (2) | −0.0082 (2) |
N1 | 0.0450 (9) | 0.0325 (8) | 0.0420 (8) | 0.0024 (7) | 0.0088 (7) | 0.0039 (6) |
N2 | 0.0451 (9) | 0.0327 (8) | 0.0389 (8) | 0.0017 (7) | 0.0104 (7) | −0.0004 (6) |
N3 | 0.0310 (7) | 0.0323 (8) | 0.0335 (7) | 0.0012 (6) | 0.0043 (6) | 0.0010 (6) |
N4 | 0.0338 (8) | 0.0320 (8) | 0.0507 (9) | 0.0033 (6) | 0.0057 (7) | 0.0006 (7) |
O1 | 0.0345 (7) | 0.0504 (9) | 0.0675 (9) | −0.0043 (6) | −0.0002 (6) | −0.0017 (7) |
O2 | 0.0522 (9) | 0.0447 (9) | 0.0673 (9) | −0.0126 (7) | −0.0016 (7) | 0.0034 (7) |
C1—C2 | 1.384 (2) | C11—H11A | 0.9600 |
C1—C6 | 1.399 (3) | C11—H11B | 0.9600 |
C1—C8 | 1.516 (2) | C11—H11C | 0.9600 |
C2—C3 | 1.389 (3) | C12—N4 | 1.356 (2) |
C2—H2 | 0.9300 | C12—N3 | 1.362 (2) |
C3—C4 | 1.380 (3) | C12—S1 | 1.6625 (18) |
C3—H3 | 0.9300 | C13—C14 | 1.342 (2) |
C4—C5 | 1.381 (3) | C13—N4 | 1.394 (2) |
C4—H4 | 0.9300 | C13—C15 | 1.501 (2) |
C5—C6 | 1.390 (3) | C14—C16 | 1.478 (2) |
C5—H5 | 0.9300 | C15—H15A | 0.9600 |
C6—N1 | 1.412 (2) | C15—H15B | 0.9600 |
C7—N1 | 1.282 (2) | C15—H15C | 0.9600 |
C7—N2 | 1.335 (2) | C16—O2 | 1.205 (2) |
C7—N3 | 1.446 (2) | C16—O1 | 1.338 (2) |
C8—N3 | 1.485 (2) | C17—O1 | 1.454 (2) |
C8—C14 | 1.507 (2) | C17—C18 | 1.479 (3) |
C8—H8 | 0.9800 | C17—H17A | 0.9700 |
C9—N2 | 1.463 (2) | C17—H17B | 0.9700 |
C9—C10 | 1.507 (3) | C18—H18A | 0.9600 |
C9—C11 | 1.507 (3) | C18—H18B | 0.9600 |
C9—H9 | 0.9800 | C18—H18C | 0.9600 |
C10—H10A | 0.9600 | N2—H2A | 0.861 (9) |
C10—H10B | 0.9600 | N4—H4A | 0.870 (9) |
C10—H10C | 0.9600 | ||
C2—C1—C6 | 120.35 (16) | H11A—C11—H11C | 109.5 |
C2—C1—C8 | 125.15 (16) | H11B—C11—H11C | 109.5 |
C6—C1—C8 | 114.50 (15) | N4—C12—N3 | 114.64 (15) |
C1—C2—C3 | 120.16 (19) | N4—C12—S1 | 122.31 (13) |
C1—C2—H2 | 119.9 | N3—C12—S1 | 123.04 (13) |
C3—C2—H2 | 119.9 | C14—C13—N4 | 118.16 (16) |
C4—C3—C2 | 119.69 (19) | C14—C13—C15 | 128.17 (17) |
C4—C3—H3 | 120.2 | N4—C13—C15 | 113.67 (16) |
C2—C3—H3 | 120.2 | C13—C14—C16 | 122.63 (17) |
C3—C4—C5 | 120.42 (19) | C13—C14—C8 | 118.46 (16) |
C3—C4—H4 | 119.8 | C16—C14—C8 | 118.91 (15) |
C5—C4—H4 | 119.8 | C13—C15—H15A | 109.5 |
C4—C5—C6 | 120.66 (19) | C13—C15—H15B | 109.5 |
C4—C5—H5 | 119.7 | H15A—C15—H15B | 109.5 |
C6—C5—H5 | 119.7 | C13—C15—H15C | 109.5 |
C5—C6—C1 | 118.72 (17) | H15A—C15—H15C | 109.5 |
C5—C6—N1 | 119.32 (17) | H15B—C15—H15C | 109.5 |
C1—C6—N1 | 121.92 (15) | O2—C16—O1 | 122.99 (17) |
N1—C7—N2 | 125.29 (16) | O2—C16—C14 | 126.50 (18) |
N1—C7—N3 | 120.91 (15) | O1—C16—C14 | 110.52 (16) |
N2—C7—N3 | 113.72 (15) | O1—C17—C18 | 107.19 (18) |
N3—C8—C14 | 109.22 (13) | O1—C17—H17A | 110.3 |
N3—C8—C1 | 105.62 (13) | C18—C17—H17A | 110.3 |
C14—C8—C1 | 117.33 (14) | O1—C17—H17B | 110.3 |
N3—C8—H8 | 108.1 | C18—C17—H17B | 110.3 |
C14—C8—H8 | 108.1 | H17A—C17—H17B | 108.5 |
C1—C8—H8 | 108.1 | C17—C18—H18A | 109.5 |
N2—C9—C10 | 107.66 (17) | C17—C18—H18B | 109.5 |
N2—C9—C11 | 111.32 (17) | H18A—C18—H18B | 109.5 |
C10—C9—C11 | 112.96 (19) | C17—C18—H18C | 109.5 |
N2—C9—H9 | 108.3 | H18A—C18—H18C | 109.5 |
C10—C9—H9 | 108.3 | H18B—C18—H18C | 109.5 |
C11—C9—H9 | 108.3 | C7—N1—C6 | 116.54 (15) |
C9—C10—H10A | 109.5 | C7—N2—C9 | 123.11 (15) |
C9—C10—H10B | 109.5 | C7—N2—H2A | 117.5 (13) |
H10A—C10—H10B | 109.5 | C9—N2—H2A | 118.4 (13) |
C9—C10—H10C | 109.5 | C12—N3—C7 | 118.27 (14) |
H10A—C10—H10C | 109.5 | C12—N3—C8 | 118.45 (14) |
H10B—C10—H10C | 109.5 | C7—N3—C8 | 110.19 (13) |
C9—C11—H11A | 109.5 | C12—N4—C13 | 125.35 (15) |
C9—C11—H11B | 109.5 | C12—N4—H4A | 114.4 (14) |
H11A—C11—H11B | 109.5 | C13—N4—H4A | 120.2 (14) |
C9—C11—H11C | 109.5 | C16—O1—C17 | 116.80 (15) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O2i | 0.86 (1) | 2.26 (1) | 3.102 (2) | 165 (2) |
N4—H4A···S1ii | 0.87 (1) | 2.42 (1) | 3.2804 (15) | 172 (2) |
Symmetry codes: (i) −x, −y+1, −z+2; (ii) −x+1, −y+1, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C18H22N4O2S |
Mr | 358.46 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 298 |
a, b, c (Å) | 9.4128 (3), 10.5636 (5), 19.2052 (6) |
β (°) | 102.347 (1) |
V (Å3) | 1865.46 (12) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.19 |
Crystal size (mm) | 0.30 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.955, 0.962 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12093, 3857, 3014 |
Rint | 0.076 |
(sin θ/λ)max (Å−1) | 0.628 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.139, 1.03 |
No. of reflections | 3857 |
No. of parameters | 236 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.34, −0.27 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O2i | 0.861 (9) | 2.263 (11) | 3.102 (2) | 164.6 (18) |
N4—H4A···S1ii | 0.870 (9) | 2.417 (10) | 3.2804 (15) | 172.1 (18) |
Symmetry codes: (i) −x, −y+1, −z+2; (ii) −x+1, −y+1, −z+2. |
Acknowledgements
The authors gratefully acknowledge financial support of this work by the Foundation of Naval University of Engineering (grant No. HGDQNJJ11007) and Hubei University of Medicine (grant Nos. 2010QDJ02 and 2011XS13).
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In recent years, we have been engaged in the preparation of heterocyclic derivatives using the aza-Wittig reaction (Li et al. 2007, 2008; Huang et al. 2009; Li et al. 2010; Zeng et al., 2010). We present here the crystal structure of the title compound (Fig. 1). The molecule contains a substituted pyrimidine ring fused to a benzene ring and a substituted thioxopyrimidine ring. The centre ring of pyrimidine moiety adopts a distored chair conformation [ϕ = 208.8 (2)° and θ = 68.85 (19)°, Puckering Amplitude = 0.5502 (17)Å], and the substituted thioxopyrimidine ring also show a distorted chair form [ϕ = 214.6 (4)° and θ = 113.9 (3)°, Puckering Amplitude = 0.3827 (17)Å] (Cremer & Pople, 1975). In the crystal, there are N—H···O and N—H···S (Table 1) hydrogen bonds.