organic compounds
6-(4-Bromophenyl)-3-methyl-7H-1,2,4-triazolo[3,4-b][1,3,4]thiadiazine
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bDepartment of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, PO Box 2457, Riyadh 11451, Saudi Arabia
*Correspondence e-mail: hkfun@usm.my
In the title compound, C11H9BrN4S, the 1,2,4-triazole ring is essentially planar (r.m.s. deviation = 0.020 Å) and makes a dihedral angle of 29.1 (5)° with the bromobenzene ring. The 3,6-dihydro-1,3,4-thiadiazine ring adopts a twist-boat conformation. In the crystal, molecules are linked by C—H⋯N interactions into sheets lying parallel to the (010) plane. The same N atom accepts two such hydrogen bonds.
Related literature
For general background to and the chemistry and biological activity of the title compound, see: Holla et al. (2001); Prasad et al. (1998); Dawood et al. (2005); Abdel-Aziz et al. (2007); Abdel-Wahab et al. (2009). For further synthesis details, see: Dickinson & Jacobsen (1975). For standard bond-length data, see: Allen et al. (1987). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986). For ring conformations, see: Cremer & Pople (1975).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536812019885/hb6774sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812019885/hb6774Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812019885/hb6774Isup3.cml
The reaction of 4-amino-5-methyl-4H-1,2,4-triazole-3-thiol and 2-bromo-1-phenylethanone afforded the title compound in the form of colourless plates according to the reported method (Dickinson & Jacobsen, 1975).
All H atoms were positioned geometrically and refined using a riding model with C–H = 0.93-0.97 Å and Uiso(H) = 1.2 or 1.5 Ueq(C). A rotating-group model was applied for the methyl group. The same Uij parameters were used for atom pair C10/C11. The highest difference peak is 0.97Å from Br1. The deepest difference hole is 0.89Å from Br1.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C11H9BrN4S | F(000) = 308 |
Mr = 309.19 | Dx = 1.771 Mg m−3 |
Monoclinic, Pc | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P -2yc | Cell parameters from 2139 reflections |
a = 4.0047 (10) Å | θ = 2.4–27.8° |
b = 13.424 (3) Å | µ = 3.71 mm−1 |
c = 10.938 (3) Å | T = 100 K |
β = 99.650 (5)° | Plate, colourless |
V = 579.7 (2) Å3 | 0.46 × 0.10 × 0.03 mm |
Z = 2 |
Bruker SMART APEXII CCD diffractometer | 2087 independent reflections |
Radiation source: fine-focus sealed tube | 1904 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.048 |
ϕ and ω scans | θmax = 26.0°, θmin = 1.5° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −4→4 |
Tmin = 0.281, Tmax = 0.910 | k = −15→16 |
5127 measured reflections | l = −13→12 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.057 | H-atom parameters constrained |
wR(F2) = 0.152 | w = 1/[σ2(Fo2) + (0.1109P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max = 0.001 |
2087 reflections | Δρmax = 3.33 e Å−3 |
149 parameters | Δρmin = −0.86 e Å−3 |
2 restraints | Absolute structure: Flack (1983), 950 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.01 (2) |
C11H9BrN4S | V = 579.7 (2) Å3 |
Mr = 309.19 | Z = 2 |
Monoclinic, Pc | Mo Kα radiation |
a = 4.0047 (10) Å | µ = 3.71 mm−1 |
b = 13.424 (3) Å | T = 100 K |
c = 10.938 (3) Å | 0.46 × 0.10 × 0.03 mm |
β = 99.650 (5)° |
Bruker SMART APEXII CCD diffractometer | 2087 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 1904 reflections with I > 2σ(I) |
Tmin = 0.281, Tmax = 0.910 | Rint = 0.048 |
5127 measured reflections |
R[F2 > 2σ(F2)] = 0.057 | H-atom parameters constrained |
wR(F2) = 0.152 | Δρmax = 3.33 e Å−3 |
S = 1.04 | Δρmin = −0.86 e Å−3 |
2087 reflections | Absolute structure: Flack (1983), 950 Friedel pairs |
149 parameters | Absolute structure parameter: 0.01 (2) |
2 restraints |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.0080 (5) | −0.00421 (15) | 0.6539 (3) | 0.0264 (5) | |
Br1 | 0.93512 (13) | 0.44899 (5) | 1.15745 (9) | 0.0234 (3) | |
N1 | −0.0050 (18) | 0.2320 (5) | 0.6525 (9) | 0.0191 (15) | |
N2 | −0.2131 (19) | 0.1740 (6) | 0.5631 (6) | 0.0203 (16) | |
N3 | −0.420 (2) | 0.0529 (5) | 0.4417 (8) | 0.0308 (18) | |
N4 | −0.5398 (18) | 0.1444 (6) | 0.3863 (7) | 0.0288 (16) | |
C1 | 0.406 (2) | 0.2109 (6) | 0.9745 (7) | 0.0188 (15) | |
H1A | 0.3374 | 0.1478 | 0.9953 | 0.023* | |
C2 | 0.592 (2) | 0.2704 (6) | 1.0655 (7) | 0.0212 (16) | |
H2A | 0.6494 | 0.2466 | 1.1462 | 0.025* | |
C3 | 0.6906 (19) | 0.3639 (6) | 1.0365 (7) | 0.0193 (16) | |
C4 | 0.622 (2) | 0.3988 (6) | 0.9129 (7) | 0.0215 (16) | |
H4A | 0.7033 | 0.4603 | 0.8919 | 0.026* | |
C5 | 0.4312 (19) | 0.3397 (6) | 0.8237 (7) | 0.0175 (15) | |
H5A | 0.3756 | 0.3639 | 0.7432 | 0.021* | |
C6 | 0.319 (2) | 0.2450 (7) | 0.8506 (8) | 0.0194 (18) | |
C7 | 0.106 (2) | 0.1867 (6) | 0.7562 (8) | 0.0178 (18) | |
C8 | 0.006 (2) | 0.0807 (7) | 0.7828 (9) | 0.0220 (18) | |
H8A | −0.2194 | 0.0815 | 0.8044 | 0.026* | |
H8B | 0.1608 | 0.0559 | 0.8540 | 0.026* | |
C9 | −0.225 (3) | 0.0749 (8) | 0.5464 (9) | 0.026 (2) | |
C10 | −0.406 (2) | 0.2173 (7) | 0.4581 (9) | 0.0256 (14) | |
C11 | −0.458 (2) | 0.3240 (7) | 0.4400 (9) | 0.0256 (14) | |
H11A | −0.5670 | 0.3365 | 0.3564 | 0.038* | |
H11B | −0.2431 | 0.3574 | 0.4552 | 0.038* | |
H11C | −0.5981 | 0.3484 | 0.4966 | 0.038* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0275 (13) | 0.0247 (10) | 0.0279 (10) | 0.0019 (7) | 0.0075 (10) | −0.0060 (9) |
Br1 | 0.0201 (4) | 0.0356 (4) | 0.0131 (4) | −0.0002 (4) | −0.0007 (2) | −0.0050 (4) |
N1 | 0.013 (4) | 0.025 (3) | 0.018 (3) | 0.002 (2) | −0.001 (3) | −0.005 (3) |
N2 | 0.025 (4) | 0.028 (4) | 0.008 (3) | 0.002 (3) | 0.002 (3) | 0.002 (3) |
N3 | 0.033 (5) | 0.038 (4) | 0.022 (4) | −0.006 (3) | 0.006 (3) | −0.010 (3) |
N4 | 0.025 (4) | 0.047 (5) | 0.017 (3) | −0.005 (3) | 0.009 (3) | −0.007 (3) |
C1 | 0.024 (4) | 0.023 (4) | 0.009 (4) | −0.001 (3) | 0.003 (3) | 0.002 (3) |
C2 | 0.020 (4) | 0.032 (4) | 0.011 (4) | 0.007 (3) | 0.001 (3) | −0.003 (3) |
C3 | 0.015 (4) | 0.029 (4) | 0.014 (4) | 0.006 (3) | 0.004 (3) | 0.001 (3) |
C4 | 0.022 (4) | 0.026 (4) | 0.016 (4) | 0.002 (3) | 0.003 (3) | 0.004 (3) |
C5 | 0.017 (4) | 0.027 (4) | 0.008 (3) | 0.001 (3) | 0.002 (3) | 0.001 (3) |
C6 | 0.023 (4) | 0.029 (4) | 0.007 (4) | 0.006 (3) | 0.003 (3) | 0.000 (3) |
C7 | 0.026 (5) | 0.013 (4) | 0.017 (5) | 0.006 (3) | 0.009 (4) | 0.001 (3) |
C8 | 0.027 (5) | 0.018 (4) | 0.022 (5) | −0.003 (3) | 0.009 (4) | 0.001 (3) |
C9 | 0.025 (5) | 0.032 (5) | 0.020 (5) | −0.003 (3) | 0.005 (4) | −0.006 (3) |
C10 | 0.015 (3) | 0.048 (4) | 0.016 (3) | −0.004 (3) | 0.007 (2) | 0.000 (3) |
C11 | 0.015 (3) | 0.048 (4) | 0.016 (3) | −0.004 (3) | 0.007 (2) | 0.000 (3) |
S1—C9 | 1.737 (11) | C2—H2A | 0.9300 |
S1—C8 | 1.813 (10) | C3—C4 | 1.413 (11) |
Br1—C3 | 1.892 (8) | C4—C5 | 1.384 (11) |
N1—C7 | 1.298 (13) | C4—H4A | 0.9300 |
N1—N2 | 1.408 (11) | C5—C6 | 1.395 (13) |
N2—C9 | 1.342 (14) | C5—H5A | 0.9300 |
N2—C10 | 1.399 (12) | C6—C7 | 1.454 (12) |
N3—C9 | 1.307 (13) | C7—C8 | 1.519 (13) |
N3—N4 | 1.417 (11) | C8—H8A | 0.9700 |
N4—C10 | 1.311 (12) | C8—H8B | 0.9700 |
C1—C2 | 1.391 (11) | C10—C11 | 1.455 (14) |
C1—C6 | 1.417 (11) | C11—H11A | 0.9600 |
C1—H1A | 0.9300 | C11—H11B | 0.9600 |
C2—C3 | 1.370 (12) | C11—H11C | 0.9600 |
C9—S1—C8 | 94.0 (4) | C5—C6—C7 | 120.8 (7) |
C7—N1—N2 | 115.1 (6) | C1—C6—C7 | 121.7 (8) |
C9—N2—C10 | 107.4 (8) | N1—C7—C6 | 116.3 (8) |
C9—N2—N1 | 130.2 (8) | N1—C7—C8 | 122.9 (8) |
C10—N2—N1 | 121.4 (8) | C6—C7—C8 | 120.7 (8) |
C9—N3—N4 | 106.7 (7) | C7—C8—S1 | 113.8 (7) |
C10—N4—N3 | 108.5 (7) | C7—C8—H8A | 108.8 |
C2—C1—C6 | 121.0 (8) | S1—C8—H8A | 108.8 |
C2—C1—H1A | 119.5 | C7—C8—H8B | 108.8 |
C6—C1—H1A | 119.5 | S1—C8—H8B | 108.8 |
C3—C2—C1 | 120.1 (8) | H8A—C8—H8B | 107.7 |
C3—C2—H2A | 120.0 | N3—C9—N2 | 110.2 (9) |
C1—C2—H2A | 120.0 | N3—C9—S1 | 129.0 (8) |
C2—C3—C4 | 120.5 (7) | N2—C9—S1 | 120.7 (7) |
C2—C3—Br1 | 121.8 (6) | N4—C10—N2 | 107.1 (9) |
C4—C3—Br1 | 117.7 (6) | N4—C10—C11 | 128.2 (9) |
C5—C4—C3 | 118.7 (7) | N2—C10—C11 | 124.6 (8) |
C5—C4—H4A | 120.6 | C10—C11—H11A | 109.5 |
C3—C4—H4A | 120.6 | C10—C11—H11B | 109.5 |
C4—C5—C6 | 122.2 (7) | H11A—C11—H11B | 109.5 |
C4—C5—H5A | 118.9 | C10—C11—H11C | 109.5 |
C6—C5—H5A | 118.9 | H11A—C11—H11C | 109.5 |
C5—C6—C1 | 117.4 (8) | H11B—C11—H11C | 109.5 |
C7—N1—N2—C9 | −26.3 (14) | C1—C6—C7—C8 | −8.3 (13) |
C7—N1—N2—C10 | 166.6 (8) | N1—C7—C8—S1 | 43.3 (11) |
C9—N3—N4—C10 | 1.6 (11) | C6—C7—C8—S1 | −140.3 (7) |
C6—C1—C2—C3 | 0.9 (12) | C9—S1—C8—C7 | −48.8 (7) |
C1—C2—C3—C4 | −3.7 (12) | N4—N3—C9—N2 | 0.5 (11) |
C1—C2—C3—Br1 | 178.6 (6) | N4—N3—C9—S1 | −177.5 (7) |
C2—C3—C4—C5 | 4.8 (12) | C10—N2—C9—N3 | −2.2 (12) |
Br1—C3—C4—C5 | −177.3 (6) | N1—N2—C9—N3 | −170.6 (9) |
C3—C4—C5—C6 | −3.3 (12) | C10—N2—C9—S1 | 176.0 (7) |
C4—C5—C6—C1 | 0.6 (13) | N1—N2—C9—S1 | 7.5 (14) |
C4—C5—C6—C7 | 177.0 (7) | C8—S1—C9—N3 | −154.5 (10) |
C2—C1—C6—C5 | 0.7 (13) | C8—S1—C9—N2 | 27.7 (9) |
C2—C1—C6—C7 | −175.7 (8) | N3—N4—C10—N2 | −2.8 (10) |
N2—N1—C7—C6 | −179.6 (7) | N3—N4—C10—C11 | −179.4 (9) |
N2—N1—C7—C8 | −3.0 (13) | C9—N2—C10—N4 | 3.1 (10) |
C5—C6—C7—N1 | −7.9 (13) | N1—N2—C10—N4 | 172.8 (8) |
C1—C6—C7—N1 | 168.4 (9) | C9—N2—C10—C11 | 179.8 (9) |
C5—C6—C7—C8 | 175.5 (9) | N1—N2—C10—C11 | −10.5 (13) |
D—H···A | D—H | H···A | D···A | D—H···A |
C8—H8A···N3i | 0.97 | 2.56 | 3.185 (12) | 122 |
C8—H8B···N3ii | 0.97 | 2.31 | 3.191 (12) | 151 |
Symmetry codes: (i) x, −y, z+1/2; (ii) x+1, −y, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C11H9BrN4S |
Mr | 309.19 |
Crystal system, space group | Monoclinic, Pc |
Temperature (K) | 100 |
a, b, c (Å) | 4.0047 (10), 13.424 (3), 10.938 (3) |
β (°) | 99.650 (5) |
V (Å3) | 579.7 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 3.71 |
Crystal size (mm) | 0.46 × 0.10 × 0.03 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.281, 0.910 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5127, 2087, 1904 |
Rint | 0.048 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.057, 0.152, 1.04 |
No. of reflections | 2087 |
No. of parameters | 149 |
No. of restraints | 2 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 3.33, −0.86 |
Absolute structure | Flack (1983), 950 Friedel pairs |
Absolute structure parameter | 0.01 (2) |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C8—H8A···N3i | 0.97 | 2.56 | 3.185 (12) | 122 |
C8—H8B···N3ii | 0.97 | 2.31 | 3.191 (12) | 151 |
Symmetry codes: (i) x, −y, z+1/2; (ii) x+1, −y, z+1/2. |
Acknowledgements
The authors thank Universiti Sains Malaysia for the Research University Grant (No. 1001/PFIZIK/811160) and the Deanship of Scientific Research and the Research Center, College of Pharmacy, King Saud University.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
For the background of the chemistry of 1,2,4-triazolo[3,4-b]-1,3,4-thiadiazine derivatives see: Holla et al. (2001) & Prasad et al. (1998). In continuation of our studies in the chemistry and biological activities of the title compound analogs (Dawood et al., 2005; Abdel-Aziz et al., 2007 & Abdel-Wahab et al., 2009), we reported the synthesis and crystal structure of the title compound.
In the title compound, Fig. 1, the 1,2,4-triazole (N2-N4/C9/C10) is essentially planar (r.m.s. deviation = 0.020 Å) and makes a dihedral angle of 29.1 (5)° with the phenyl ring (C1-C6). The 3,6-dihydro-1,3,4-thiadiazine ring (S1/N1/N2/C7-C9) adopts a twist-boat conformation, with puckering parameters Q = 0.552 (8) Å, Θ = 66.6 (9)° and ϕ = 32.5 (10)° (Cremer & Pople, 1975). Bond lengths (Allen et al., 1987) and angles are within normal ranges.
In the crystal (Fig.2), molecules are linked via C8–H8A···N3 and C8–H8B···N3 bonds (Table 1) into sheets parallel to the (010) plane.