organic compounds
rac-(3S,4Z)-3-Chloro-4-[2-(3-fluorobenzylidene)hydrazinylidene]-1-methyl-3,4-dihydro-1H-2λ6,1-benzothiazine-2,2-dione
aDepartment of Chemistry, Government College University, Faisalabad, Pakistan, bUniversity of Sargodha, Department of Physics, Sargodha, Pakistan, cMaterials Chemistry Laboratory, Department of Chemistry, Government College University, Lahore, Pakistan, and dDepartment of Chemistry, Gomal University, Dera Ismail Khan, K.P.K, Pakistan
*Correspondence e-mail: dmntahir_uos@yahoo.com
In the title compound, C16H13ClFN3O2S, the dihedral angle between the benzene rings is 4.47 (3)°. The conformation of the thiazine ring is a half-chair and the Cl atom is in an axial orientation. In the crystal, molecules are linked by C—H⋯F interactions, generating C(12) chains propagating in [011]. Aromatic π–π stacking interactions [centroid–centroid separations = 3.753 (2) and 3.758 (2) Å] also occur.
Related literature
For a related structure and background references, see: Shafiq et al. (2012). For further synthetic details, see: Shafiq et al. (2011a,b). For ring conformations, see: Cremer & Pople (1975).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON.
Supporting information
10.1107/S1600536812021654/hb6778sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812021654/hb6778Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812021654/hb6778Isup3.cml
The Schiff base derivative of (4Z)-4-hydrazinylidene-1-methyl-3,4-dihydro -1H-2,1-benzothiazine 2,2-dioxide and 3-flourobenzaldehyde was prepared using the method reported previously (Shafiq et al. 2011b). The chlorination of the schiff base was undertaken using N-chloro succinimide and dibenzoylperoxide (Shafiq et al., 2011a). The crude product of (I) was re-crystallized in ethyl acetate to obtain yellow needles of the title compound.
The H-atoms were positioned geometrically (C–H = 0.93–0.96 Å) and refined as riding with Uiso(H) = xUeq(C), where x = 1.5 for methyl and x = 1.2 for aryl H-atoms.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON (Spek, 2009).Fig. 1. View of the title compound with displacement ellipsoids drawn at the 50% probability level. | |
Fig. 2. Partial packing diagram showing polymeric chains. |
C16H13ClFN3O2S | Z = 2 |
Mr = 365.80 | F(000) = 376 |
Triclinic, P1 | Dx = 1.485 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.0072 (3) Å | Cell parameters from 1744 reflections |
b = 8.9402 (4) Å | θ = 2.3–25.3° |
c = 13.3438 (6) Å | µ = 0.39 mm−1 |
α = 98.184 (3)° | T = 296 K |
β = 90.510 (2)° | Needle, yellow |
γ = 98.389 (3)° | 0.26 × 0.18 × 0.12 mm |
V = 818.19 (6) Å3 |
Bruker Kappa APEXII CCD diffractometer | 2941 independent reflections |
Radiation source: fine-focus sealed tube | 1744 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.065 |
Detector resolution: 8.10 pixels mm-1 | θmax = 25.3°, θmin = 2.3° |
ω scans | h = −8→8 |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | k = −10→10 |
Tmin = 0.930, Tmax = 0.960 | l = −16→16 |
11874 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.050 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.120 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0478P)2 + 0.0889P] where P = (Fo2 + 2Fc2)/3 |
2941 reflections | (Δ/σ)max < 0.001 |
218 parameters | Δρmax = 0.33 e Å−3 |
0 restraints | Δρmin = −0.32 e Å−3 |
C16H13ClFN3O2S | γ = 98.389 (3)° |
Mr = 365.80 | V = 818.19 (6) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.0072 (3) Å | Mo Kα radiation |
b = 8.9402 (4) Å | µ = 0.39 mm−1 |
c = 13.3438 (6) Å | T = 296 K |
α = 98.184 (3)° | 0.26 × 0.18 × 0.12 mm |
β = 90.510 (2)° |
Bruker Kappa APEXII CCD diffractometer | 2941 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 1744 reflections with I > 2σ(I) |
Tmin = 0.930, Tmax = 0.960 | Rint = 0.065 |
11874 measured reflections |
R[F2 > 2σ(F2)] = 0.050 | 0 restraints |
wR(F2) = 0.120 | H-atom parameters constrained |
S = 1.00 | Δρmax = 0.33 e Å−3 |
2941 reflections | Δρmin = −0.32 e Å−3 |
218 parameters |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.49246 (13) | 0.08066 (10) | 0.23725 (7) | 0.0532 (4) | |
S1 | 0.86510 (13) | 0.02559 (10) | 0.15593 (7) | 0.0428 (3) | |
F1 | 0.8027 (4) | 0.4684 (3) | 0.88468 (18) | 0.0894 (11) | |
O1 | 1.0538 (3) | 0.0163 (3) | 0.19335 (18) | 0.0532 (9) | |
O2 | 0.8416 (4) | 0.1283 (3) | 0.08580 (18) | 0.0561 (10) | |
N1 | 0.7533 (4) | −0.1425 (3) | 0.1110 (2) | 0.0426 (10) | |
N2 | 0.7629 (4) | −0.0292 (3) | 0.4293 (2) | 0.0459 (11) | |
N3 | 0.7744 (4) | 0.1263 (3) | 0.4676 (2) | 0.0483 (11) | |
C1 | 0.7272 (4) | −0.2167 (3) | 0.2815 (3) | 0.0336 (11) | |
C2 | 0.7020 (5) | −0.3359 (4) | 0.3404 (3) | 0.0450 (12) | |
C3 | 0.6839 (5) | −0.4857 (4) | 0.2968 (3) | 0.0516 (16) | |
C4 | 0.6917 (5) | −0.5215 (4) | 0.1934 (3) | 0.0523 (16) | |
C5 | 0.7157 (5) | −0.4082 (4) | 0.1340 (3) | 0.0478 (12) | |
C6 | 0.7322 (4) | −0.2558 (4) | 0.1761 (3) | 0.0365 (12) | |
C7 | 0.7362 (4) | 0.0683 (4) | 0.2675 (2) | 0.0369 (12) | |
C8 | 0.7431 (4) | −0.0574 (3) | 0.3326 (3) | 0.0349 (11) | |
C9 | 0.7800 (5) | 0.1472 (4) | 0.5641 (3) | 0.0460 (14) | |
C10 | 0.7926 (5) | 0.2996 (4) | 0.6232 (3) | 0.0403 (12) | |
C11 | 0.7939 (5) | 0.3134 (4) | 0.7280 (3) | 0.0446 (12) | |
C12 | 0.8044 (5) | 0.4569 (5) | 0.7816 (3) | 0.0509 (14) | |
C13 | 0.8143 (5) | 0.5861 (4) | 0.7388 (3) | 0.0555 (16) | |
C14 | 0.8139 (6) | 0.5733 (5) | 0.6347 (3) | 0.0616 (17) | |
C15 | 0.8029 (5) | 0.4312 (4) | 0.5773 (3) | 0.0520 (16) | |
C16 | 0.6640 (7) | −0.1733 (4) | 0.0094 (3) | 0.0738 (19) | |
H2 | 0.69751 | −0.31273 | 0.41045 | 0.0537* | |
H3 | 0.66630 | −0.56307 | 0.33701 | 0.0617* | |
H4 | 0.68056 | −0.62314 | 0.16378 | 0.0630* | |
H5 | 0.72107 | −0.43369 | 0.06412 | 0.0575* | |
H7 | 0.79712 | 0.16603 | 0.30513 | 0.0445* | |
H9 | 0.77593 | 0.06299 | 0.59809 | 0.0550* | |
H11 | 0.78773 | 0.22787 | 0.76088 | 0.0531* | |
H13 | 0.82112 | 0.68101 | 0.77869 | 0.0670* | |
H14 | 0.82110 | 0.66031 | 0.60328 | 0.0737* | |
H15 | 0.80241 | 0.42290 | 0.50700 | 0.0627* | |
H16A | 0.73119 | −0.24304 | −0.03305 | 0.1104* | |
H16B | 0.67065 | −0.07948 | −0.01841 | 0.1104* | |
H16C | 0.53138 | −0.21768 | 0.01300 | 0.1104* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0468 (6) | 0.0544 (6) | 0.0638 (7) | 0.0169 (5) | 0.0014 (5) | 0.0171 (5) |
S1 | 0.0479 (6) | 0.0375 (6) | 0.0431 (6) | 0.0047 (4) | 0.0054 (4) | 0.0072 (4) |
F1 | 0.118 (2) | 0.096 (2) | 0.0487 (17) | 0.0188 (16) | 0.0047 (15) | −0.0117 (13) |
O1 | 0.0366 (14) | 0.0522 (16) | 0.0688 (18) | 0.0026 (12) | 0.0021 (13) | 0.0062 (14) |
O2 | 0.0778 (19) | 0.0452 (16) | 0.0494 (17) | 0.0094 (13) | 0.0105 (14) | 0.0197 (13) |
N1 | 0.0589 (19) | 0.0380 (18) | 0.0290 (17) | 0.0038 (14) | −0.0007 (14) | 0.0021 (14) |
N2 | 0.062 (2) | 0.0408 (19) | 0.0339 (19) | 0.0118 (15) | −0.0019 (15) | −0.0016 (14) |
N3 | 0.070 (2) | 0.0406 (19) | 0.0321 (19) | 0.0104 (16) | −0.0009 (16) | −0.0043 (14) |
C1 | 0.0342 (19) | 0.031 (2) | 0.035 (2) | 0.0057 (15) | −0.0041 (16) | 0.0025 (16) |
C2 | 0.049 (2) | 0.044 (2) | 0.042 (2) | 0.0071 (18) | −0.0016 (18) | 0.0060 (19) |
C3 | 0.059 (3) | 0.038 (2) | 0.059 (3) | 0.0051 (19) | −0.007 (2) | 0.014 (2) |
C4 | 0.064 (3) | 0.032 (2) | 0.059 (3) | 0.0044 (19) | −0.007 (2) | 0.004 (2) |
C5 | 0.057 (2) | 0.044 (2) | 0.040 (2) | 0.0084 (19) | 0.0006 (19) | −0.0031 (19) |
C6 | 0.038 (2) | 0.036 (2) | 0.035 (2) | 0.0062 (16) | −0.0027 (16) | 0.0032 (17) |
C7 | 0.040 (2) | 0.034 (2) | 0.034 (2) | 0.0038 (16) | 0.0010 (16) | −0.0024 (16) |
C8 | 0.0325 (19) | 0.035 (2) | 0.036 (2) | 0.0037 (15) | −0.0034 (16) | 0.0025 (16) |
C9 | 0.048 (2) | 0.047 (2) | 0.043 (3) | 0.0120 (18) | 0.0026 (19) | 0.0019 (19) |
C10 | 0.041 (2) | 0.046 (2) | 0.032 (2) | 0.0069 (17) | 0.0038 (16) | −0.0009 (18) |
C11 | 0.049 (2) | 0.047 (2) | 0.036 (2) | 0.0043 (18) | 0.0045 (18) | 0.0031 (18) |
C12 | 0.054 (2) | 0.066 (3) | 0.027 (2) | 0.006 (2) | 0.0025 (18) | −0.010 (2) |
C13 | 0.055 (3) | 0.042 (2) | 0.065 (3) | 0.007 (2) | 0.006 (2) | −0.008 (2) |
C14 | 0.071 (3) | 0.056 (3) | 0.056 (3) | 0.007 (2) | 0.003 (2) | 0.005 (2) |
C15 | 0.062 (3) | 0.053 (3) | 0.039 (2) | 0.006 (2) | 0.0028 (19) | 0.002 (2) |
C16 | 0.123 (4) | 0.056 (3) | 0.039 (3) | 0.002 (3) | −0.016 (3) | 0.008 (2) |
Cl1—C7 | 1.774 (3) | C10—C11 | 1.386 (6) |
S1—O1 | 1.427 (2) | C10—C15 | 1.395 (5) |
S1—O2 | 1.426 (3) | C11—C12 | 1.369 (6) |
S1—N1 | 1.620 (3) | C12—C13 | 1.353 (6) |
S1—C7 | 1.772 (3) | C13—C14 | 1.377 (6) |
F1—C12 | 1.365 (5) | C14—C15 | 1.378 (6) |
N1—C6 | 1.418 (5) | C2—H2 | 0.9300 |
N1—C16 | 1.461 (5) | C3—H3 | 0.9300 |
N2—N3 | 1.402 (4) | C4—H4 | 0.9300 |
N2—C8 | 1.281 (5) | C5—H5 | 0.9300 |
N3—C9 | 1.274 (5) | C7—H7 | 0.9800 |
C1—C2 | 1.404 (5) | C9—H9 | 0.9300 |
C1—C6 | 1.402 (6) | C11—H11 | 0.9300 |
C1—C8 | 1.477 (4) | C13—H13 | 0.9300 |
C2—C3 | 1.370 (5) | C14—H14 | 0.9300 |
C3—C4 | 1.375 (6) | C15—H15 | 0.9300 |
C4—C5 | 1.365 (5) | C16—H16A | 0.9600 |
C5—C6 | 1.386 (5) | C16—H16B | 0.9600 |
C7—C8 | 1.521 (5) | C16—H16C | 0.9600 |
C9—C10 | 1.464 (5) | ||
O1—S1—O2 | 119.60 (17) | F1—C12—C13 | 118.7 (4) |
O1—S1—N1 | 110.77 (16) | C11—C12—C13 | 124.2 (4) |
O1—S1—C7 | 103.50 (14) | C12—C13—C14 | 118.3 (4) |
O2—S1—N1 | 108.96 (15) | C13—C14—C15 | 119.8 (4) |
O2—S1—C7 | 111.18 (16) | C10—C15—C14 | 120.9 (4) |
N1—S1—C7 | 101.18 (15) | C1—C2—H2 | 119.00 |
S1—N1—C6 | 117.9 (2) | C3—C2—H2 | 119.00 |
S1—N1—C16 | 121.1 (2) | C2—C3—H3 | 120.00 |
C6—N1—C16 | 120.9 (3) | C4—C3—H3 | 120.00 |
N3—N2—C8 | 113.5 (3) | C3—C4—H4 | 120.00 |
N2—N3—C9 | 111.1 (3) | C5—C4—H4 | 120.00 |
C2—C1—C6 | 117.8 (3) | C4—C5—H5 | 119.00 |
C2—C1—C8 | 118.9 (3) | C6—C5—H5 | 119.00 |
C6—C1—C8 | 123.2 (3) | Cl1—C7—H7 | 109.00 |
C1—C2—C3 | 121.3 (4) | S1—C7—H7 | 109.00 |
C2—C3—C4 | 119.9 (3) | C8—C7—H7 | 109.00 |
C3—C4—C5 | 120.2 (3) | N3—C9—H9 | 119.00 |
C4—C5—C6 | 121.1 (4) | C10—C9—H9 | 119.00 |
N1—C6—C1 | 121.4 (3) | C10—C11—H11 | 121.00 |
N1—C6—C5 | 118.9 (3) | C12—C11—H11 | 121.00 |
C1—C6—C5 | 119.7 (3) | C12—C13—H13 | 121.00 |
Cl1—C7—S1 | 110.70 (15) | C14—C13—H13 | 121.00 |
Cl1—C7—C8 | 109.6 (2) | C13—C14—H14 | 120.00 |
S1—C7—C8 | 108.8 (2) | C15—C14—H14 | 120.00 |
N2—C8—C1 | 119.6 (3) | C10—C15—H15 | 120.00 |
N2—C8—C7 | 122.2 (3) | C14—C15—H15 | 120.00 |
C1—C8—C7 | 118.2 (3) | N1—C16—H16A | 109.00 |
N3—C9—C10 | 122.1 (3) | N1—C16—H16B | 109.00 |
C9—C10—C11 | 118.9 (3) | N1—C16—H16C | 109.00 |
C9—C10—C15 | 122.0 (4) | H16A—C16—H16B | 110.00 |
C11—C10—C15 | 119.0 (3) | H16A—C16—H16C | 109.00 |
C10—C11—C12 | 117.9 (3) | H16B—C16—H16C | 109.00 |
F1—C12—C11 | 117.2 (4) | ||
O1—S1—N1—C6 | 56.5 (3) | C2—C1—C8—C7 | −169.8 (3) |
O2—S1—N1—C6 | −170.0 (2) | C8—C1—C2—C3 | 179.1 (3) |
C7—S1—N1—C6 | −52.8 (3) | C6—C1—C2—C3 | 0.4 (5) |
O1—S1—N1—C16 | −128.2 (3) | C6—C1—C8—N2 | −170.9 (3) |
O2—S1—N1—C16 | 5.4 (3) | C1—C2—C3—C4 | 0.5 (5) |
C7—S1—N1—C16 | 122.6 (3) | C2—C3—C4—C5 | −0.6 (5) |
N1—S1—C7—Cl1 | −63.9 (2) | C3—C4—C5—C6 | −0.1 (5) |
O1—S1—C7—C8 | −58.3 (2) | C4—C5—C6—N1 | −178.8 (3) |
O2—S1—C7—C8 | 172.1 (2) | C4—C5—C6—C1 | 1.0 (5) |
N1—S1—C7—C8 | 56.5 (2) | Cl1—C7—C8—N2 | −97.9 (3) |
O1—S1—C7—Cl1 | −178.68 (18) | Cl1—C7—C8—C1 | 82.4 (3) |
O2—S1—C7—Cl1 | 51.7 (2) | S1—C7—C8—N2 | 141.0 (3) |
C16—N1—C6—C5 | 31.8 (5) | S1—C7—C8—C1 | −38.7 (3) |
S1—N1—C6—C5 | −152.9 (3) | N3—C9—C10—C11 | 178.6 (3) |
S1—N1—C6—C1 | 27.3 (4) | N3—C9—C10—C15 | −1.2 (5) |
C16—N1—C6—C1 | −148.0 (3) | C9—C10—C11—C12 | −179.6 (3) |
C8—N2—N3—C9 | 175.3 (3) | C15—C10—C11—C12 | 0.3 (5) |
N3—N2—C8—C1 | −179.5 (3) | C9—C10—C15—C14 | 179.7 (4) |
N3—N2—C8—C7 | 0.9 (4) | C11—C10—C15—C14 | −0.1 (5) |
N2—N3—C9—C10 | 179.9 (3) | C10—C11—C12—F1 | 179.1 (3) |
C2—C1—C6—N1 | 178.7 (3) | C10—C11—C12—C13 | −0.3 (6) |
C2—C1—C6—C5 | −1.1 (4) | F1—C12—C13—C14 | −179.3 (3) |
C8—C1—C6—N1 | 0.0 (4) | C11—C12—C13—C14 | 0.0 (6) |
C8—C1—C6—C5 | −179.8 (3) | C12—C13—C14—C15 | 0.2 (6) |
C6—C1—C8—C7 | 8.9 (4) | C13—C14—C15—C10 | −0.2 (6) |
C2—C1—C8—N2 | 10.5 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···F1i | 0.93 | 2.53 | 3.442 (5) | 167 |
Symmetry code: (i) x, y−1, z−1. |
Experimental details
Crystal data | |
Chemical formula | C16H13ClFN3O2S |
Mr | 365.80 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 7.0072 (3), 8.9402 (4), 13.3438 (6) |
α, β, γ (°) | 98.184 (3), 90.510 (2), 98.389 (3) |
V (Å3) | 818.19 (6) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.39 |
Crystal size (mm) | 0.26 × 0.18 × 0.12 |
Data collection | |
Diffractometer | Bruker Kappa APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.930, 0.960 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11874, 2941, 1744 |
Rint | 0.065 |
(sin θ/λ)max (Å−1) | 0.600 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.120, 1.00 |
No. of reflections | 2941 |
No. of parameters | 218 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.33, −0.32 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009), WinGX (Farrugia, 1999) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···F1i | 0.93 | 2.53 | 3.442 (5) | 167 |
Symmetry code: (i) x, y−1, z−1. |
Acknowledgements
MS gratefully acknowledges the Higher Education Commission, Islamabad, Pakistan, for providing a scholarship under the Indigenous PhD Program (PIN 042–120567-PS2–276).
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As part of our ongoing synthetic and structural studies of thiazine derivatives (Shafiq et al., 2012), we now describe the title compound, (I), (Fig. 1).
In (I), the benzene rings A (C1—C6) and B (C10—C15) are planar with r. m. s. deviation of 0.0040 and 0.0012 Å, respectively. The dihedral angle between A/B is 4.47 (3)°. The central group C (N2/N3/C9) is of course planar. The dihedral angle between A/C and B/C is 5.87 (7) and 1.48 (8)°, respectively. The thiazine ring D (C1/C6/N1/S1/C7/C8) is in the half-chair form, with the maximum puckering amplitude (Cremer & Pople, 1975), Q = 0.563 (3) Å. In the crystal, the molecules form chains due to H-bonding of C—H···F type (Table 1, Fig. 2). There exist π–π interactions between CgA···CgBi [i = 1 - x, -y, 1 - z] and CgB···CgAii [ii = 2 - x, -y, 1 - z] at a distance of 3.758 (2) and 3.753 (2) Å, where CgA and CgB are the centroids of benzene rings A and B, respectively.