organic compounds
(E)-2-Cyano-N′-(1,2,3,4-tetrahydronaphthalen-1-ylidene)acetohydrazide
aDepartment of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia, bDrug Exploration & Development Chair (DEDC), College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia, cDepartment of Therapeutic Chemistry, Pharmaceutical and Drug Industries Division, National Research Centre, Dokki 12622, Cairo, Egypt, and dX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
In the title compound, C13H13N3O, the tetrahydrobenzene ring adopts a half-boat (envelope) conformation. The mean plane of the tetrahydronaphthalene ring system forms a dihedral angle of 9.56 (6)° with the mean plane of the cyanoacetohydrazide group. In the crystal, inversion dimers linked by pairs of N—H⋯O hydrogen bonds generate R22(8) loops. The dimers are connected by C—H⋯N hydrogen bonds into a chain propagating along [101]. The crystal packing also features C—H⋯π interactions.
Related literature
For background to tetralin, see: Dutta et al. (2002); Taddei et al. (2002); Zaghary et al. (2005); Bahgat & Khalifa (2006); El Nezhawy et al. (2009); Khalifa et al. (2008). For ring puckering parameters, see: Cremer & Pople (1975).
Experimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S160053681202106X/hb6781sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053681202106X/hb6781Isup2.hkl
Supporting information file. DOI: 10.1107/S160053681202106X/hb6781Isup3.cml
Equimolar amounts (0.01 mol) of tetralone and 2-cyanoacetohydrazide in dioxane (30 ml) were heated under reflux for 6 h. The mixture was then cooled at room temperature for overnight. The precipitated solid was filtered off, washed with ethanol, dried and crystallized from methanol to afford the title compound as colourless blocks with 73% abundance, m.p.: 183–185 °C.
The atom H1N1 was located in a difference fourier map and refined freely [N1—H1N1 = 0.90 (2) Å]. The remaining H atoms were positioned geometrically [C—H = 0.93 and 0.97 Å] and refined using a riding model with Uiso(H) = 1.2 Ueq(C).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C13H13N3O | Z = 2 |
Mr = 227.26 | F(000) = 240 |
Triclinic, P1 | Dx = 1.297 Mg m−3 |
Hall symbol: -P 1 | Cu Kα radiation, λ = 1.54178 Å |
a = 7.6414 (1) Å | Cell parameters from 2725 reflections |
b = 7.6748 (1) Å | θ = 5.8–70.2° |
c = 10.5644 (2) Å | µ = 0.69 mm−1 |
α = 109.589 (1)° | T = 296 K |
β = 91.405 (1)° | Block, colourless |
γ = 93.260 (1)° | 0.59 × 0.51 × 0.40 mm |
V = 582.13 (2) Å3 |
Bruker SMART APEXII CCD diffractometer | 1898 independent reflections |
Radiation source: fine-focus sealed tube | 1762 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.017 |
ϕ and ω scans | θmax = 65.0°, θmin = 5.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −8→8 |
Tmin = 0.687, Tmax = 0.771 | k = −7→9 |
5749 measured reflections | l = −12→12 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.043 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.120 | w = 1/[σ2(Fo2) + (0.0686P)2 + 0.0904P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max < 0.001 |
1898 reflections | Δρmax = 0.18 e Å−3 |
159 parameters | Δρmin = −0.17 e Å−3 |
0 restraints | Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.030 (3) |
C13H13N3O | γ = 93.260 (1)° |
Mr = 227.26 | V = 582.13 (2) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.6414 (1) Å | Cu Kα radiation |
b = 7.6748 (1) Å | µ = 0.69 mm−1 |
c = 10.5644 (2) Å | T = 296 K |
α = 109.589 (1)° | 0.59 × 0.51 × 0.40 mm |
β = 91.405 (1)° |
Bruker SMART APEXII CCD diffractometer | 1898 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 1762 reflections with I > 2σ(I) |
Tmin = 0.687, Tmax = 0.771 | Rint = 0.017 |
5749 measured reflections |
R[F2 > 2σ(F2)] = 0.043 | 0 restraints |
wR(F2) = 0.120 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.18 e Å−3 |
1898 reflections | Δρmin = −0.17 e Å−3 |
159 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.19129 (16) | 0.4167 (2) | 0.53245 (10) | 0.0798 (4) | |
N1 | 0.07938 (15) | 0.36666 (18) | 0.32370 (11) | 0.0530 (3) | |
N2 | 0.10531 (14) | 0.29801 (15) | 0.18782 (10) | 0.0456 (3) | |
N3 | 0.5764 (3) | 0.2338 (4) | 0.5360 (2) | 0.1264 (9) | |
C1 | −0.02329 (16) | 0.29510 (17) | 0.10641 (13) | 0.0419 (3) | |
C2 | −0.20191 (18) | 0.3606 (2) | 0.14809 (15) | 0.0531 (4) | |
H2A | −0.1954 | 0.4950 | 0.1788 | 0.064* | |
H2B | −0.2357 | 0.3218 | 0.2230 | 0.064* | |
C3 | −0.34209 (18) | 0.2862 (2) | 0.03515 (16) | 0.0590 (4) | |
H3A | −0.3665 | 0.1544 | 0.0168 | 0.071* | |
H3B | −0.4494 | 0.3470 | 0.0632 | 0.071* | |
C4 | −0.28501 (19) | 0.3183 (2) | −0.09133 (16) | 0.0583 (4) | |
H4A | −0.2742 | 0.4504 | −0.0759 | 0.070* | |
H4B | −0.3738 | 0.2621 | −0.1629 | 0.070* | |
C5 | −0.11171 (18) | 0.23730 (19) | −0.13436 (14) | 0.0491 (4) | |
C6 | 0.01244 (16) | 0.22607 (16) | −0.03809 (12) | 0.0416 (3) | |
C7 | 0.17256 (17) | 0.15242 (19) | −0.08101 (14) | 0.0478 (3) | |
H7A | 0.2555 | 0.1441 | −0.0177 | 0.057* | |
C8 | 0.2098 (2) | 0.0923 (2) | −0.21424 (15) | 0.0575 (4) | |
H8A | 0.3170 | 0.0438 | −0.2407 | 0.069* | |
C9 | 0.0876 (2) | 0.1038 (2) | −0.30948 (15) | 0.0636 (4) | |
H9A | 0.1122 | 0.0629 | −0.4001 | 0.076* | |
C10 | −0.0706 (2) | 0.1761 (2) | −0.26907 (15) | 0.0613 (4) | |
H10A | −0.1520 | 0.1842 | −0.3334 | 0.074* | |
C11 | 0.20438 (19) | 0.3556 (2) | 0.41121 (14) | 0.0547 (4) | |
C12 | 0.3655 (2) | 0.2592 (2) | 0.35112 (15) | 0.0619 (4) | |
H12A | 0.3304 | 0.1361 | 0.2892 | 0.074* | |
H12B | 0.4251 | 0.3284 | 0.3011 | 0.074* | |
C13 | 0.4837 (2) | 0.2454 (3) | 0.45556 (17) | 0.0712 (5) | |
H1N1 | −0.010 (3) | 0.434 (3) | 0.3642 (19) | 0.078 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0795 (8) | 0.1259 (11) | 0.0388 (6) | 0.0515 (7) | 0.0104 (5) | 0.0263 (6) |
N1 | 0.0473 (7) | 0.0739 (8) | 0.0390 (6) | 0.0203 (6) | 0.0055 (5) | 0.0178 (5) |
N2 | 0.0432 (6) | 0.0558 (7) | 0.0378 (6) | 0.0092 (5) | 0.0022 (4) | 0.0148 (5) |
N3 | 0.0968 (14) | 0.189 (2) | 0.0923 (14) | 0.0546 (15) | −0.0274 (11) | 0.0414 (14) |
C1 | 0.0377 (7) | 0.0438 (7) | 0.0456 (7) | 0.0036 (5) | 0.0000 (5) | 0.0167 (5) |
C2 | 0.0420 (7) | 0.0643 (9) | 0.0538 (8) | 0.0104 (6) | 0.0054 (6) | 0.0195 (7) |
C3 | 0.0374 (7) | 0.0665 (9) | 0.0744 (10) | 0.0053 (6) | −0.0015 (6) | 0.0255 (8) |
C4 | 0.0441 (8) | 0.0667 (9) | 0.0653 (9) | 0.0060 (6) | −0.0122 (6) | 0.0245 (7) |
C5 | 0.0452 (7) | 0.0495 (7) | 0.0512 (8) | 0.0002 (6) | −0.0089 (6) | 0.0164 (6) |
C6 | 0.0395 (7) | 0.0401 (6) | 0.0429 (7) | 0.0007 (5) | −0.0037 (5) | 0.0117 (5) |
C7 | 0.0438 (7) | 0.0517 (7) | 0.0450 (7) | 0.0076 (6) | −0.0041 (5) | 0.0122 (6) |
C8 | 0.0544 (8) | 0.0603 (9) | 0.0503 (8) | 0.0106 (7) | 0.0047 (6) | 0.0078 (7) |
C9 | 0.0711 (10) | 0.0723 (10) | 0.0396 (7) | 0.0049 (8) | −0.0002 (7) | 0.0089 (7) |
C10 | 0.0632 (9) | 0.0711 (10) | 0.0466 (8) | 0.0019 (7) | −0.0144 (7) | 0.0174 (7) |
C11 | 0.0542 (8) | 0.0729 (9) | 0.0398 (7) | 0.0209 (7) | 0.0061 (6) | 0.0197 (6) |
C12 | 0.0528 (8) | 0.0840 (11) | 0.0442 (8) | 0.0228 (7) | 0.0006 (6) | 0.0127 (7) |
C13 | 0.0574 (9) | 0.0923 (12) | 0.0596 (9) | 0.0241 (8) | −0.0055 (8) | 0.0175 (9) |
O1—C11 | 1.2163 (17) | C4—H4B | 0.9700 |
N1—C11 | 1.3389 (18) | C5—C10 | 1.391 (2) |
N1—N2 | 1.3770 (15) | C5—C6 | 1.4009 (18) |
N1—H1N1 | 0.90 (2) | C6—C7 | 1.3986 (19) |
N2—C1 | 1.2841 (16) | C7—C8 | 1.369 (2) |
N3—C13 | 1.122 (2) | C7—H7A | 0.9300 |
C1—C6 | 1.4766 (18) | C8—C9 | 1.383 (2) |
C1—C2 | 1.5061 (18) | C8—H8A | 0.9300 |
C2—C3 | 1.519 (2) | C9—C10 | 1.376 (2) |
C2—H2A | 0.9700 | C9—H9A | 0.9300 |
C2—H2B | 0.9700 | C10—H10A | 0.9300 |
C3—C4 | 1.508 (2) | C11—C12 | 1.5140 (19) |
C3—H3A | 0.9700 | C12—C13 | 1.444 (2) |
C3—H3B | 0.9700 | C12—H12A | 0.9700 |
C4—C5 | 1.510 (2) | C12—H12B | 0.9700 |
C4—H4A | 0.9700 | ||
C11—N1—N2 | 119.64 (11) | C6—C5—C4 | 120.20 (13) |
C11—N1—H1N1 | 112.9 (12) | C7—C6—C5 | 118.82 (12) |
N2—N1—H1N1 | 127.0 (12) | C7—C6—C1 | 120.57 (11) |
C1—N2—N1 | 117.97 (11) | C5—C6—C1 | 120.59 (11) |
N2—C1—C6 | 116.02 (11) | C8—C7—C6 | 121.36 (12) |
N2—C1—C2 | 124.94 (12) | C8—C7—H7A | 119.3 |
C6—C1—C2 | 119.01 (11) | C6—C7—H7A | 119.3 |
C1—C2—C3 | 112.97 (12) | C7—C8—C9 | 119.94 (13) |
C1—C2—H2A | 109.0 | C7—C8—H8A | 120.0 |
C3—C2—H2A | 109.0 | C9—C8—H8A | 120.0 |
C1—C2—H2B | 109.0 | C10—C9—C8 | 119.50 (14) |
C3—C2—H2B | 109.0 | C10—C9—H9A | 120.3 |
H2A—C2—H2B | 107.8 | C8—C9—H9A | 120.3 |
C4—C3—C2 | 111.41 (12) | C9—C10—C5 | 121.62 (13) |
C4—C3—H3A | 109.3 | C9—C10—H10A | 119.2 |
C2—C3—H3A | 109.3 | C5—C10—H10A | 119.2 |
C4—C3—H3B | 109.3 | O1—C11—N1 | 122.97 (13) |
C2—C3—H3B | 109.3 | O1—C11—C12 | 120.79 (13) |
H3A—C3—H3B | 108.0 | N1—C11—C12 | 116.23 (12) |
C3—C4—C5 | 111.56 (12) | C13—C12—C11 | 110.54 (13) |
C3—C4—H4A | 109.3 | C13—C12—H12A | 109.5 |
C5—C4—H4A | 109.3 | C11—C12—H12A | 109.5 |
C3—C4—H4B | 109.3 | C13—C12—H12B | 109.5 |
C5—C4—H4B | 109.3 | C11—C12—H12B | 109.5 |
H4A—C4—H4B | 108.0 | H12A—C12—H12B | 108.1 |
C10—C5—C6 | 118.76 (13) | N3—C13—C12 | 179.4 (2) |
C10—C5—C4 | 121.04 (12) | ||
C11—N1—N2—C1 | 173.62 (13) | C2—C1—C6—C7 | −175.60 (12) |
N1—N2—C1—C6 | 178.06 (11) | N2—C1—C6—C5 | −172.51 (11) |
N1—N2—C1—C2 | −0.3 (2) | C2—C1—C6—C5 | 5.95 (18) |
N2—C1—C2—C3 | −161.63 (13) | C5—C6—C7—C8 | 0.2 (2) |
C6—C1—C2—C3 | 20.06 (18) | C1—C6—C7—C8 | −178.26 (12) |
C1—C2—C3—C4 | −50.51 (17) | C6—C7—C8—C9 | 0.0 (2) |
C2—C3—C4—C5 | 55.23 (17) | C7—C8—C9—C10 | 0.1 (2) |
C3—C4—C5—C10 | 151.26 (14) | C8—C9—C10—C5 | −0.4 (3) |
C3—C4—C5—C6 | −30.03 (18) | C6—C5—C10—C9 | 0.6 (2) |
C10—C5—C6—C7 | −0.5 (2) | C4—C5—C10—C9 | 179.32 (15) |
C4—C5—C6—C7 | −179.24 (12) | N2—N1—C11—O1 | 178.53 (15) |
C10—C5—C6—C1 | 177.98 (12) | N2—N1—C11—C12 | −2.2 (2) |
C4—C5—C6—C1 | −0.76 (19) | O1—C11—C12—C13 | 3.3 (2) |
N2—C1—C6—C7 | 5.94 (18) | N1—C11—C12—C13 | −175.97 (15) |
Cg1 is the centroid of the C5–C10 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N1···O1i | 0.91 (2) | 1.96 (2) | 2.8640 (17) | 174.7 (19) |
C10—H10A···N3ii | 0.93 | 2.58 | 3.491 (3) | 167 |
C2—H2A···Cg1iii | 0.97 | 2.80 | 3.6775 (17) | 152 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) x−1, y, z−1; (iii) −x, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | C13H13N3O |
Mr | 227.26 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 7.6414 (1), 7.6748 (1), 10.5644 (2) |
α, β, γ (°) | 109.589 (1), 91.405 (1), 93.260 (1) |
V (Å3) | 582.13 (2) |
Z | 2 |
Radiation type | Cu Kα |
µ (mm−1) | 0.69 |
Crystal size (mm) | 0.59 × 0.51 × 0.40 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.687, 0.771 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5749, 1898, 1762 |
Rint | 0.017 |
(sin θ/λ)max (Å−1) | 0.588 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.120, 1.05 |
No. of reflections | 1898 |
No. of parameters | 159 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.18, −0.17 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
Cg1 is the centroid of the C5–C10 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N1···O1i | 0.91 (2) | 1.96 (2) | 2.8640 (17) | 174.7 (19) |
C10—H10A···N3ii | 0.93 | 2.58 | 3.491 (3) | 167 |
C2—H2A···Cg1iii | 0.97 | 2.80 | 3.6775 (17) | 152 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) x−1, y, z−1; (iii) −x, −y+1, −z. |
Footnotes
‡Thomson Reuters ResearcherID: A-3561-2009.
Acknowledgements
MAO, NMK and HAG thank the Deanship of Scientific Research at King Saud University for funding through the research group project No. RGP-VPP-099. HKF and TSC thank Universiti Sains Malaysia (USM) for the Research University Grant (1001/PFIZIK/811160). TSC also thanks the Malaysian Government and USM for the award of a research fellowship.
References
Bahgat, M. M. & Khalifa, N. M. (2006). Acta Pol. Pharm. 63, 181–188. CAS PubMed Google Scholar
Bruker (2009). SADABS, APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358. CrossRef CAS Web of Science Google Scholar
Dutta, A. K., Fei, X.-S. & Reith, M. E. A. (2002). Bioorg. Med. Chem. Lett. 12, 619–622. Web of Science CrossRef PubMed CAS Google Scholar
El Nezhawy, A. O. H., Ramla, M. M., Khalifa, N. M. & Abdulla, M. M. (2009). Monatsh. Chem. 140, 531–539. Web of Science CrossRef CAS Google Scholar
Khalifa, N. M., Ramla, M. M., Amr, A. E.-G. E. & Abdulla, M. M. (2008). Phosphorus Sulfur Silicon Relat. Elem. 183, 3046–3062. Web of Science CrossRef CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Taddei, P., Torreggiani, A. & Fini, G. (2002). Biopolymers, 67, 289–293. Web of Science CrossRef PubMed Google Scholar
Zaghary, W. A., Heiba, M. E., Anwar, M. M. & Hassan, S. A. (2005). Egypt. Pharm. J. (NRC), 4, 145–149. Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Tetralins (tetrahydronaphthalene derivatives) are of increasing interest since many of these compounds play a vital role in the biological activities because of their biological potentialities, for example, as potent agonists for D2-type receptors (Dutta et al., 2002), a treatment of Alzheimer's disease (Taddei et al., 2002) and as anti-cancer agents (Zaghary et al., 2005). Also, we found that certain substituted tetralin and heterocyclic derivatives show inhibition for cercarial serine protease (Bahgat & Khalifa, 2006), antioxidant (El Nezhawy et al., 2009) and antiinflammatory (Khalifa et al., 2008) activities. Tetralin derivative containing cyanoaceto-hydrazide was prepared as the title compound and its crystal structure is now reported.
The asymmetric unit of the title compound is shown in Fig. 1. The tetrahydrobenzene ring (C1–C6) adopts a half-boat conformation with puckering parameters (Cremer & Pople, 1975), Q = 0.4695 (16) Å, θ = 122.4 (2)° and ϕ = 308.6 (2)°. The flap atom C3 deviates from the mean plane of C1/C2/C4–C6 by -0.6395 (16) Å. In the molecule, the mean plane of tetrahydronaphthalene ring system (C1–C10) forms a dihedral angle of 9.56 (6)° with the mean plane of cyanoacetohydrazide group [O1/N1–N3/C11–C13; maximum deviation = 0.045 (2) Å at atom C12].
In the crystal (Fig. 2), molecules are linked by a pair of N1—H1N1···O1 hydrogen bonds into an inversion dimer with an R22(8) ring motif. The dimers are further connected by C10—H10A···N3 hydrogen bonds into an infinite chain along [101]. The crystal packing also features C—H···π interaction (Table 1), involving Cg1 which is the centroid of C5–C10 ring.