organic compounds
5-Carbamoyl-2-methyl-1-(2-methylbenzyl)pyridinium bromide
aDepartment of Fine Chemistry, Seoul National University of Science & Technology, Seoul 139-743, Republic of Korea, and bDepartment of Chemistry and Nano Science, Ewha Womans University, Seoul 120-750, Republic of Korea
*Correspondence e-mail: chealkim@seoultech.ac.kr, ymeekim@ewha.ac.kr
In the title molecular salt, C15H17N2O+·Br−, the benzene and pyridinium rings form a dihedral angle of 83.0 (1)°. In the crystal, N—H⋯Br and N—H⋯O hydrogen bonds link the components into chains along [010]. These chains are linked by weak C—H⋯O and C—H⋯Br hydrogen bonds, forming a three-dimensional network.
Related literature
The title compound was prepared as an NAD+ (nicotinamide adenine dinucleotide) model. For the role of reduced nicotinamide co-factors (NADH and NADPH) in enzyme-catalysed reactions, see: Hollmann et al. (2001); Lee et al. (2011); Maenaka et al. (2012); Park et al. (2008); Ruppert et al. (1988); Zhu et al. (2003, 2006). For the generation of NADH, see: Qing et al. (2006). For an efficient method of in situ regeneration, see: Song et al. (2008). For a related structure, see: Kim et al. (2012).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1997); cell SAINT (Bruker, 1997); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 1999); software used to prepare material for publication: SHELXTL (Brandenburg, 1999).
Supporting information
10.1107/S1600536812018958/lh5461sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812018958/lh5461Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812018958/lh5461Isup3.cml
6-Methylnicotinamide (136.15 mg, 1 mmol) was dissolved 10 ml dimethylformamide. After stirring for a few minutes, 2-methylbenzyl bromide (185.06 mg, 1 mmol) was carefully added to the reaction solution. The solution was stirred for 3 h at 353K. The precipitate was filtered, washed three times with methylene chloride, and dried under vacuum. 3-Carbamoyl-6-methyl-1-(2-methylbenzyl)pyridinium bromide (16.06 mg, 0.05 mmol) was dissolved in 1 ml methanol and carefully layered by 3 ml isopropyl ether. Suitable crystals of the title compound for X-ray analysis were obtained in a few days.
H atoms bonded to C atoms were placed in calculated positions with C—H distances of 0.93 Å for aromatic C atoms, 0.96 Å for methyl C atoms, and 0.97 Å for a methylene C atoms. They were included in the
in riding-motion approximation with Uiso(H) = 1.2Ueq(C) and 1.5Ueq(C). The positions of N—H atoms of the amine were included with N—H = 0.86 A and Uiso(H) =1.2Ueq(N).Data collection: SMART (Bruker, 1997); cell
SAINT (Bruker, 1997); data reduction: SAINT (Bruker, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 1999); software used to prepare material for publication: SHELXTL (Brandenburg, 1999).Fig. 1. The molecular structure of the title compound showing displacement ellipsoids at the 50% probability level. |
C15H17N2O+·Br− | F(000) = 1312 |
Mr = 321.22 | Dx = 1.441 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 2248 reflections |
a = 8.4880 (17) Å | θ = 2.3–25.2° |
b = 10.502 (2) Å | µ = 2.77 mm−1 |
c = 33.450 (7) Å | T = 293 K |
β = 96.85 (3)° | Block, colorless |
V = 2960.5 (10) Å3 | 0.50 × 0.20 × 0.10 mm |
Z = 8 |
Bruker SMART CCD diffractometer | 2879 independent reflections |
Radiation source: fine-focus sealed tube | 1857 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.043 |
ϕ and ω scans | θmax = 26.0°, θmin = 2.5° |
Absorption correction: multi-scan (SADABS; Bruker, 1997) | h = −9→10 |
Tmin = 0.338, Tmax = 0.769 | k = −12→8 |
8103 measured reflections | l = −41→40 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.096 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0247P)2 + 1.3939P] where P = (Fo2 + 2Fc2)/3 |
2879 reflections | (Δ/σ)max = 0.001 |
174 parameters | Δρmax = 0.36 e Å−3 |
0 restraints | Δρmin = −0.31 e Å−3 |
C15H17N2O+·Br− | V = 2960.5 (10) Å3 |
Mr = 321.22 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 8.4880 (17) Å | µ = 2.77 mm−1 |
b = 10.502 (2) Å | T = 293 K |
c = 33.450 (7) Å | 0.50 × 0.20 × 0.10 mm |
β = 96.85 (3)° |
Bruker SMART CCD diffractometer | 2879 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1997) | 1857 reflections with I > 2σ(I) |
Tmin = 0.338, Tmax = 0.769 | Rint = 0.043 |
8103 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 0 restraints |
wR(F2) = 0.096 | H-atom parameters constrained |
S = 1.00 | Δρmax = 0.36 e Å−3 |
2879 reflections | Δρmin = −0.31 e Å−3 |
174 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Br1 | 0.01684 (4) | 0.38708 (4) | 0.349683 (12) | 0.06234 (17) | |
N1 | 0.2074 (3) | 0.3760 (3) | 0.26330 (9) | 0.0686 (9) | |
H1A | 0.1599 | 0.4033 | 0.2830 | 0.082* | |
H1B | 0.2111 | 0.2957 | 0.2585 | 0.082* | |
N2 | 0.4953 (3) | 0.4466 (3) | 0.15096 (8) | 0.0435 (6) | |
O1 | 0.2735 (4) | 0.5725 (3) | 0.24558 (9) | 0.0862 (9) | |
C1 | 0.2742 (4) | 0.4572 (4) | 0.24056 (11) | 0.0577 (9) | |
C2 | 0.3589 (4) | 0.4032 (3) | 0.20721 (10) | 0.0466 (8) | |
C3 | 0.3794 (4) | 0.2738 (4) | 0.20086 (11) | 0.0590 (9) | |
H3 | 0.3414 | 0.2144 | 0.2180 | 0.071* | |
C4 | 0.4560 (4) | 0.2342 (3) | 0.16924 (11) | 0.0570 (9) | |
H4 | 0.4696 | 0.1475 | 0.1652 | 0.068* | |
C5 | 0.5131 (4) | 0.3198 (3) | 0.14343 (10) | 0.0468 (8) | |
C6 | 0.5919 (4) | 0.2774 (3) | 0.10809 (10) | 0.0599 (10) | |
H6A | 0.5354 | 0.3112 | 0.0838 | 0.090* | |
H6B | 0.5916 | 0.1861 | 0.1068 | 0.090* | |
H6C | 0.6993 | 0.3078 | 0.1109 | 0.090* | |
C7 | 0.4195 (3) | 0.4868 (3) | 0.18186 (9) | 0.0452 (8) | |
H7 | 0.4083 | 0.5737 | 0.1860 | 0.054* | |
C8 | 0.5564 (4) | 0.5431 (3) | 0.12466 (10) | 0.0503 (9) | |
H8A | 0.6635 | 0.5199 | 0.1201 | 0.060* | |
H8B | 0.5617 | 0.6246 | 0.1384 | 0.060* | |
C9 | 0.4566 (4) | 0.5572 (3) | 0.08456 (10) | 0.0500 (9) | |
C10 | 0.3025 (4) | 0.5121 (3) | 0.07804 (11) | 0.0609 (10) | |
H10 | 0.2579 | 0.4712 | 0.0986 | 0.073* | |
C11 | 0.2144 (5) | 0.5281 (4) | 0.04038 (14) | 0.0816 (13) | |
H11 | 0.1113 | 0.4971 | 0.0356 | 0.098* | |
C12 | 0.2825 (7) | 0.5909 (4) | 0.01029 (14) | 0.0939 (17) | |
H12 | 0.2248 | 0.6027 | −0.0149 | 0.113* | |
C13 | 0.4333 (7) | 0.6351 (4) | 0.01754 (14) | 0.0880 (14) | |
H13 | 0.4773 | 0.6767 | −0.0030 | 0.106* | |
C14 | 0.5231 (5) | 0.6206 (3) | 0.05406 (12) | 0.0664 (11) | |
C15 | 0.6904 (6) | 0.6707 (5) | 0.06056 (15) | 0.1029 (16) | |
H15A | 0.7139 | 0.7144 | 0.0368 | 0.154* | |
H15B | 0.7629 | 0.6010 | 0.0661 | 0.154* | |
H15C | 0.7010 | 0.7286 | 0.0829 | 0.154* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0576 (3) | 0.0523 (3) | 0.0775 (3) | −0.0027 (2) | 0.00950 (18) | 0.0134 (2) |
N1 | 0.075 (2) | 0.078 (2) | 0.0571 (19) | −0.0028 (19) | 0.0258 (17) | −0.0019 (17) |
N2 | 0.0468 (15) | 0.0348 (15) | 0.0494 (16) | 0.0015 (13) | 0.0076 (13) | −0.0034 (13) |
O1 | 0.118 (2) | 0.0592 (18) | 0.091 (2) | 0.0093 (18) | 0.0527 (18) | −0.0127 (16) |
C1 | 0.057 (2) | 0.065 (3) | 0.052 (2) | 0.007 (2) | 0.0107 (18) | −0.001 (2) |
C2 | 0.0435 (18) | 0.051 (2) | 0.0451 (19) | 0.0017 (16) | 0.0045 (15) | −0.0026 (17) |
C3 | 0.071 (2) | 0.045 (2) | 0.061 (2) | −0.0051 (19) | 0.011 (2) | 0.0024 (18) |
C4 | 0.072 (2) | 0.035 (2) | 0.065 (2) | 0.0027 (18) | 0.0104 (19) | −0.0033 (18) |
C5 | 0.0427 (19) | 0.037 (2) | 0.059 (2) | 0.0023 (16) | 0.0002 (16) | −0.0075 (17) |
C6 | 0.057 (2) | 0.053 (2) | 0.071 (2) | 0.0049 (18) | 0.0164 (19) | −0.0177 (19) |
C7 | 0.0461 (19) | 0.044 (2) | 0.0453 (19) | 0.0041 (16) | 0.0042 (16) | −0.0068 (16) |
C8 | 0.057 (2) | 0.038 (2) | 0.058 (2) | −0.0058 (17) | 0.0144 (18) | −0.0061 (17) |
C9 | 0.064 (2) | 0.0372 (19) | 0.050 (2) | 0.0100 (18) | 0.0107 (18) | −0.0060 (17) |
C10 | 0.065 (2) | 0.054 (2) | 0.062 (3) | 0.018 (2) | 0.001 (2) | −0.0070 (19) |
C11 | 0.078 (3) | 0.073 (3) | 0.090 (3) | 0.029 (2) | −0.008 (3) | −0.021 (3) |
C12 | 0.142 (5) | 0.079 (4) | 0.055 (3) | 0.046 (3) | −0.014 (3) | 0.002 (2) |
C13 | 0.129 (4) | 0.071 (3) | 0.064 (3) | 0.014 (3) | 0.013 (3) | 0.004 (2) |
C14 | 0.103 (3) | 0.042 (2) | 0.055 (2) | 0.007 (2) | 0.014 (2) | −0.0017 (19) |
C15 | 0.137 (4) | 0.088 (3) | 0.092 (3) | −0.044 (3) | 0.048 (3) | 0.005 (3) |
N1—C1 | 1.315 (5) | C7—H7 | 0.9300 |
N1—H1A | 0.8600 | C8—C9 | 1.506 (5) |
N1—H1B | 0.8600 | C8—H8A | 0.9700 |
N2—C7 | 1.348 (4) | C8—H8B | 0.9700 |
N2—C5 | 1.367 (4) | C9—C10 | 1.384 (5) |
N2—C8 | 1.476 (4) | C9—C14 | 1.393 (5) |
O1—C1 | 1.224 (4) | C10—C11 | 1.397 (5) |
C1—C2 | 1.508 (5) | C10—H10 | 0.9300 |
C2—C7 | 1.363 (4) | C11—C12 | 1.385 (7) |
C2—C3 | 1.390 (5) | C11—H11 | 0.9300 |
C3—C4 | 1.371 (5) | C12—C13 | 1.357 (7) |
C3—H3 | 0.9300 | C12—H12 | 0.9300 |
C4—C5 | 1.374 (5) | C13—C14 | 1.369 (6) |
C4—H4 | 0.9300 | C13—H13 | 0.9300 |
C5—C6 | 1.494 (4) | C14—C15 | 1.505 (6) |
C6—H6A | 0.9600 | C15—H15A | 0.9600 |
C6—H6B | 0.9600 | C15—H15B | 0.9600 |
C6—H6C | 0.9600 | C15—H15C | 0.9600 |
C1—N1—H1A | 120.0 | N2—C8—C9 | 113.5 (3) |
C1—N1—H1B | 120.0 | N2—C8—H8A | 108.9 |
H1A—N1—H1B | 120.0 | C9—C8—H8A | 108.9 |
C7—N2—C5 | 121.3 (3) | N2—C8—H8B | 108.9 |
C7—N2—C8 | 118.4 (3) | C9—C8—H8B | 108.9 |
C5—N2—C8 | 120.3 (3) | H8A—C8—H8B | 107.7 |
O1—C1—N1 | 123.6 (4) | C10—C9—C14 | 120.4 (3) |
O1—C1—C2 | 118.9 (4) | C10—C9—C8 | 121.8 (3) |
N1—C1—C2 | 117.5 (3) | C14—C9—C8 | 117.7 (3) |
C7—C2—C3 | 118.1 (3) | C9—C10—C11 | 119.7 (4) |
C7—C2—C1 | 117.9 (3) | C9—C10—H10 | 120.2 |
C3—C2—C1 | 124.0 (3) | C11—C10—H10 | 120.2 |
C4—C3—C2 | 119.6 (3) | C12—C11—C10 | 119.2 (4) |
C4—C3—H3 | 120.2 | C12—C11—H11 | 120.4 |
C2—C3—H3 | 120.2 | C10—C11—H11 | 120.4 |
C3—C4—C5 | 121.4 (3) | C13—C12—C11 | 120.0 (4) |
C3—C4—H4 | 119.3 | C13—C12—H12 | 120.0 |
C5—C4—H4 | 119.3 | C11—C12—H12 | 120.0 |
N2—C5—C4 | 117.8 (3) | C12—C13—C14 | 122.3 (5) |
N2—C5—C6 | 120.4 (3) | C12—C13—H13 | 118.8 |
C4—C5—C6 | 121.8 (3) | C14—C13—H13 | 118.8 |
C5—C6—H6A | 109.5 | C13—C14—C9 | 118.4 (4) |
C5—C6—H6B | 109.5 | C13—C14—C15 | 120.3 (4) |
H6A—C6—H6B | 109.5 | C9—C14—C15 | 121.3 (4) |
C5—C6—H6C | 109.5 | C14—C15—H15A | 109.5 |
H6A—C6—H6C | 109.5 | C14—C15—H15B | 109.5 |
H6B—C6—H6C | 109.5 | H15A—C15—H15B | 109.5 |
N2—C7—C2 | 121.7 (3) | C14—C15—H15C | 109.5 |
N2—C7—H7 | 119.1 | H15A—C15—H15C | 109.5 |
C2—C7—H7 | 119.1 | H15B—C15—H15C | 109.5 |
O1—C1—C2—C7 | −5.5 (5) | C1—C2—C7—N2 | −179.2 (3) |
N1—C1—C2—C7 | 175.8 (3) | C7—N2—C8—C9 | −103.9 (3) |
O1—C1—C2—C3 | 174.2 (4) | C5—N2—C8—C9 | 74.9 (4) |
N1—C1—C2—C3 | −4.5 (5) | N2—C8—C9—C10 | 17.3 (4) |
C7—C2—C3—C4 | −1.4 (5) | N2—C8—C9—C14 | −164.3 (3) |
C1—C2—C3—C4 | 178.9 (3) | C14—C9—C10—C11 | 1.2 (5) |
C2—C3—C4—C5 | −0.1 (5) | C8—C9—C10—C11 | 179.6 (3) |
C7—N2—C5—C4 | −2.2 (4) | C9—C10—C11—C12 | −0.9 (6) |
C8—N2—C5—C4 | 179.0 (3) | C10—C11—C12—C13 | 0.4 (7) |
C7—N2—C5—C6 | 177.6 (3) | C11—C12—C13—C14 | −0.2 (7) |
C8—N2—C5—C6 | −1.1 (4) | C12—C13—C14—C9 | 0.5 (6) |
C3—C4—C5—N2 | 1.9 (5) | C12—C13—C14—C15 | 179.6 (4) |
C3—C4—C5—C6 | −177.9 (3) | C10—C9—C14—C13 | −1.0 (5) |
C5—N2—C7—C2 | 0.8 (5) | C8—C9—C14—C13 | −179.5 (3) |
C8—N2—C7—C2 | 179.5 (3) | C10—C9—C14—C15 | 179.9 (4) |
C3—C2—C7—N2 | 1.1 (5) | C8—C9—C14—C15 | 1.4 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···Br1 | 0.86 | 2.67 | 3.477 (3) | 157 |
N1—H1B···O1i | 0.86 | 2.35 | 3.207 (4) | 173 |
C3—H3···O1i | 0.93 | 2.22 | 3.149 (5) | 174 |
C4—H4···Br1i | 0.93 | 2.78 | 3.712 (4) | 175 |
C6—H6C···Br1ii | 0.96 | 2.73 | 3.638 (3) | 157 |
C8—H8B···Br1iii | 0.97 | 2.87 | 3.782 (3) | 156 |
Symmetry codes: (i) −x+1/2, y−1/2, −z+1/2; (ii) −x+1, y, −z+1/2; (iii) −x+1/2, y+1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C15H17N2O+·Br− |
Mr | 321.22 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 293 |
a, b, c (Å) | 8.4880 (17), 10.502 (2), 33.450 (7) |
β (°) | 96.85 (3) |
V (Å3) | 2960.5 (10) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 2.77 |
Crystal size (mm) | 0.50 × 0.20 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 1997) |
Tmin, Tmax | 0.338, 0.769 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8103, 2879, 1857 |
Rint | 0.043 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.096, 1.00 |
No. of reflections | 2879 |
No. of parameters | 174 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.36, −0.31 |
Computer programs: SMART (Bruker, 1997), SAINT (Bruker, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), DIAMOND (Brandenburg, 1999), SHELXTL (Brandenburg, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···Br1 | 0.86 | 2.67 | 3.477 (3) | 156.8 |
N1—H1B···O1i | 0.86 | 2.35 | 3.207 (4) | 172.7 |
C3—H3···O1i | 0.93 | 2.22 | 3.149 (5) | 173.8 |
C4—H4···Br1i | 0.93 | 2.78 | 3.712 (4) | 175.1 |
C6—H6C···Br1ii | 0.96 | 2.73 | 3.638 (3) | 157.0 |
C8—H8B···Br1iii | 0.97 | 2.87 | 3.782 (3) | 156.0 |
Symmetry codes: (i) −x+1/2, y−1/2, −z+1/2; (ii) −x+1, y, −z+1/2; (iii) −x+1/2, y+1/2, −z+1/2. |
Acknowledgements
Financial support from the Converging Research Center Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science and Technology (2011 K000675), and Seoul National University of Science & Technology is gratefully acknowledged.
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Reduced nicotinamide co-factors (NADH and NADPH) play an important role in a variety of enzyme-catalyzed reactions (Hollmann et al., 2001; Lee et al., 2011; Maenaka et al., 2012; Park et al., 2008; Ruppert et al., 1988; Zhu et al., 2003; Zhu et al., 2006). For example, in biocatalytic systems, many enzymes depend on nicotinamide co-factors (NAD and NADP) for their functions (Park et al., 2008).To date, a number of strategies including enzymatic catalysis, whole-cell conversion, chemical method, have been devised to the regeneration of NADH (Qing et al., 2006). The high cost of these co-factors, however, is prohibitive of industrialization of many promising enzymatic processes. An efficient method of their in situ regeneration is the only means for making the processes economically and industrially feasible (Song et al., 2008). Therefore, we and many researchers have given considerable attention to the chemistry of NADH and its models (Hollmann et al., 2001; Kim et al., 2012). In this work, we have synthesized the title compound as a NAD+ model and report here the crystal structure.
The molecular structure of the title compound is shown in Fig. 1. The benzene and pyridinium rings form a dihedral angle of 83.0 (1)°. In the crystal, N—H···Br and N—H···O hydrogen bonds link the components into chains along [010]. These chains are linked by weak intermolecular C—H···O and C—H···Br hydrogen bonds to form a three-dimensional network.