metal-organic compounds
Tetra-μ3-iodido-tetrakis{[ethyl 2-(1H-benzimidazol-1-yl)acetate-κN3]copper(I)}
aDepartment of General Medicine, Lanzhou University Second Hospital, Lanzhou 730030, People's Republic of China
*Correspondence e-mail: llyang666@163.com
The complex molecule of the tetranuclear cubane-type title compound, [Cu4I4(C11H12N2O2)4], has crystallographically imposed fourfold inversion symmetry. The CuI ions are coordinated in a distorted tetrahedral geometry by an N atom of a benzimidazole ring system and three μ3-iodide ions, forming a Cu4I4 core. In the crystal, complex molecules are connected into a three-dimensional network by C—H⋯O hydrogen bonds involving H and O atoms of adjacent ethoxycarbonyl groups.
Related literature
For potential applications in physiological and pharmacological fields of benzimidazoyl derivatives or complexes based on the benzimidazoyl unit, see: Ramla et al. (2007); Barreca et al. (2007); Cetinkaya et al. (1999); Snyderwine et al. (1997); Skog & Solyakov (2002); Garner et al. (1999). For applications of copper complexes in biology or medicine, see: Sorrell 1989. For related structures, see: Sun et al. (2011); Liu et al. (2011); Toth et al. (1987).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S160053681202257X/rz2757sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053681202257X/rz2757Isup2.hkl
A mixture of ethyl 2-(1H-benzimidazol-1-yl)acetate (0.015 g, 0.1 mmol), CuI (0.019 g, 0.1 mmol), 3 mL H2O and 10 mL EtOH was heated at 160°C under hydrothermal condition in a Teflon lined steel autoclave (inner volume 15 mL) for 3 days, and then cooled to room temperature at a rate of 2°C h-1. Red single crystals suitable for X-Ray diffraction were obtained in 43% yield. Elemental Calc. for C44H48Cu4I4N8O8: C, 33.48; H, 3.06; N, 7.10%. Found: C, 33.61; H, 3.21; N, 7.21%.
Carbon-bound H-atoms were placed in calculated positions (C—H = 0.93 Å) and were included in the
in the riding model approximation. The Uiso(H) were allowed at 1.2 Ueq (C).Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).[Cu4I4(C11H12N2O2)4] | Dx = 2.015 Mg m−3 |
Mr = 1578.66 | Mo Kα radiation, λ = 0.71073 Å |
Tetragonal, I41/a | Cell parameters from 4922 reflections |
Hall symbol: -I 4ad | θ = 2.7–27.9° |
a = 21.196 (11) Å | µ = 4.04 mm−1 |
c = 11.581 (7) Å | T = 296 K |
V = 5203 (5) Å3 | Block, red |
Z = 4 | 0.24 × 0.22 × 0.18 mm |
F(000) = 3040 |
Bruker APEXII CCD diffractometer | 2422 independent reflections |
Radiation source: fine-focus sealed tube | 2018 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.046 |
ϕ and ω scans | θmax = 25.5°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Bruker, 2007) | h = −14→25 |
Tmin = 0.768, Tmax = 0.784 | k = −25→24 |
13042 measured reflections | l = −13→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.023 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.053 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0216P)2 + 3.0196P] where P = (Fo2 + 2Fc2)/3 |
2422 reflections | (Δ/σ)max = 0.004 |
155 parameters | Δρmax = 0.35 e Å−3 |
0 restraints | Δρmin = −0.32 e Å−3 |
[Cu4I4(C11H12N2O2)4] | Z = 4 |
Mr = 1578.66 | Mo Kα radiation |
Tetragonal, I41/a | µ = 4.04 mm−1 |
a = 21.196 (11) Å | T = 296 K |
c = 11.581 (7) Å | 0.24 × 0.22 × 0.18 mm |
V = 5203 (5) Å3 |
Bruker APEXII CCD diffractometer | 2422 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2007) | 2018 reflections with I > 2σ(I) |
Tmin = 0.768, Tmax = 0.784 | Rint = 0.046 |
13042 measured reflections |
R[F2 > 2σ(F2)] = 0.023 | 0 restraints |
wR(F2) = 0.053 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.35 e Å−3 |
2422 reflections | Δρmin = −0.32 e Å−3 |
155 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
I1 | 1.102882 (10) | 0.771393 (11) | 0.517267 (18) | 0.04331 (9) | |
O2 | 0.78785 (12) | 1.08340 (12) | 0.5233 (2) | 0.0575 (7) | |
C9 | 0.81754 (17) | 1.02891 (18) | 0.5439 (3) | 0.0471 (9) | |
C11 | 0.7103 (2) | 1.1347 (3) | 0.4120 (7) | 0.143 (3) | |
H11A | 0.7103 | 1.1719 | 0.4593 | 0.214* | |
H11B | 0.6699 | 1.1302 | 0.3753 | 0.214* | |
H11C | 0.7425 | 1.1383 | 0.3541 | 0.214* | |
C8 | 0.88524 (16) | 1.04277 (16) | 0.5783 (3) | 0.0506 (9) | |
H8A | 0.9052 | 1.0679 | 0.5186 | 0.061* | |
H8B | 0.8855 | 1.0671 | 0.6493 | 0.061* | |
C10 | 0.72251 (18) | 1.0806 (2) | 0.4824 (4) | 0.0664 (11) | |
H10A | 0.7160 | 1.0424 | 0.4379 | 0.080* | |
H10B | 0.6939 | 1.0800 | 0.5477 | 0.080* | |
O1 | 0.79545 (12) | 0.97762 (12) | 0.5333 (2) | 0.0598 (7) | |
N2 | 0.92099 (13) | 0.98507 (12) | 0.5952 (2) | 0.0443 (7) | |
N1 | 0.96375 (13) | 0.89215 (13) | 0.5503 (2) | 0.0435 (7) | |
C7 | 0.93802 (16) | 0.94424 (16) | 0.5110 (3) | 0.0440 (8) | |
H7 | 0.9321 | 0.9523 | 0.4328 | 0.053* | |
C5 | 0.93545 (16) | 0.95618 (15) | 0.7004 (3) | 0.0428 (8) | |
C6 | 0.96267 (15) | 0.89832 (15) | 0.6711 (3) | 0.0405 (8) | |
C4 | 0.92889 (18) | 0.97605 (18) | 0.8156 (3) | 0.0556 (10) | |
H4 | 0.9111 | 1.0148 | 0.8347 | 0.067* | |
C3 | 0.95049 (19) | 0.9346 (2) | 0.8988 (3) | 0.0626 (11) | |
H3 | 0.9472 | 0.9457 | 0.9762 | 0.075* | |
C1 | 0.98362 (18) | 0.85733 (18) | 0.7569 (3) | 0.0538 (10) | |
H1 | 1.0014 | 0.8185 | 0.7385 | 0.065* | |
C2 | 0.97706 (18) | 0.87645 (19) | 0.8701 (3) | 0.0603 (10) | |
H2 | 0.9907 | 0.8499 | 0.9289 | 0.072* | |
Cu1 | 0.98756 (2) | 0.81434 (2) | 0.45656 (4) | 0.04928 (13) |
U11 | U22 | U33 | U12 | U13 | U23 | |
I1 | 0.03946 (14) | 0.04686 (15) | 0.04360 (13) | −0.00175 (11) | −0.00630 (9) | −0.00031 (10) |
O2 | 0.0476 (15) | 0.0452 (15) | 0.0798 (18) | 0.0054 (13) | −0.0103 (13) | 0.0033 (13) |
C9 | 0.047 (2) | 0.047 (2) | 0.0474 (19) | 0.003 (2) | 0.0016 (17) | −0.0051 (17) |
C11 | 0.068 (3) | 0.104 (4) | 0.256 (9) | 0.012 (4) | −0.033 (4) | 0.080 (5) |
C8 | 0.047 (2) | 0.0350 (19) | 0.070 (2) | 0.0048 (18) | −0.0008 (18) | −0.0054 (17) |
C10 | 0.050 (2) | 0.074 (3) | 0.076 (3) | 0.004 (2) | −0.011 (2) | 0.006 (2) |
O1 | 0.0576 (17) | 0.0428 (15) | 0.0789 (18) | −0.0059 (14) | −0.0057 (14) | −0.0100 (13) |
N2 | 0.0445 (17) | 0.0343 (15) | 0.0542 (17) | 0.0042 (14) | −0.0006 (14) | −0.0027 (13) |
N1 | 0.0467 (17) | 0.0391 (16) | 0.0446 (15) | 0.0054 (14) | −0.0011 (13) | −0.0027 (13) |
C7 | 0.042 (2) | 0.043 (2) | 0.0469 (19) | 0.0004 (17) | −0.0031 (16) | −0.0032 (16) |
C5 | 0.0369 (18) | 0.042 (2) | 0.049 (2) | −0.0038 (16) | 0.0005 (16) | −0.0007 (16) |
C6 | 0.0400 (19) | 0.0360 (18) | 0.0456 (18) | 0.0006 (16) | 0.0008 (15) | −0.0037 (15) |
C4 | 0.057 (2) | 0.053 (2) | 0.058 (2) | 0.002 (2) | 0.0094 (19) | −0.0157 (19) |
C3 | 0.071 (3) | 0.074 (3) | 0.043 (2) | −0.002 (2) | 0.0065 (19) | −0.007 (2) |
C1 | 0.062 (3) | 0.044 (2) | 0.055 (2) | 0.003 (2) | −0.0007 (18) | 0.0030 (17) |
C2 | 0.068 (3) | 0.062 (3) | 0.051 (2) | −0.001 (2) | 0.001 (2) | 0.009 (2) |
Cu1 | 0.0551 (3) | 0.0414 (2) | 0.0513 (3) | 0.0049 (2) | 0.0002 (2) | −0.0078 (2) |
I1—Cu1 | 2.7015 (14) | N1—C6 | 1.406 (4) |
I1—Cu1i | 2.7244 (16) | N1—Cu1 | 2.038 (3) |
I1—Cu1ii | 2.7334 (14) | C7—H7 | 0.9300 |
O2—C9 | 1.337 (4) | C5—C6 | 1.397 (4) |
O2—C10 | 1.465 (4) | C5—C4 | 1.406 (5) |
C9—O1 | 1.190 (4) | C6—C1 | 1.392 (5) |
C9—C8 | 1.518 (5) | C4—C3 | 1.383 (5) |
C11—C10 | 1.432 (6) | C4—H4 | 0.9300 |
C11—H11A | 0.9600 | C3—C2 | 1.395 (5) |
C11—H11B | 0.9600 | C3—H3 | 0.9300 |
C11—H11C | 0.9600 | C1—C2 | 1.379 (5) |
C10—H10A | 0.9700 | C1—H1 | 0.9300 |
C10—H10B | 0.9700 | C2—H2 | 0.9300 |
C8—N2 | 1.452 (4) | Cu1—I1iii | 2.7244 (16) |
C8—H8A | 0.9700 | Cu1—Cu1iii | 2.7252 (13) |
C8—H8B | 0.9700 | Cu1—Cu1i | 2.7252 (13) |
N2—C7 | 1.353 (4) | Cu1—I1ii | 2.7334 (14) |
N2—C5 | 1.397 (4) | Cu1—Cu1ii | 2.7780 (17) |
N1—C7 | 1.313 (4) | ||
Cu1—I1—Cu1i | 60.299 (15) | C1—C6—C5 | 120.5 (3) |
Cu1—I1—Cu1ii | 61.477 (17) | C1—C6—N1 | 130.3 (3) |
Cu1i—I1—Cu1ii | 59.912 (15) | C5—C6—N1 | 109.3 (3) |
C9—O2—C10 | 117.9 (3) | C3—C4—C5 | 116.0 (3) |
O1—C9—O2 | 125.9 (3) | C3—C4—H4 | 122.0 |
O1—C9—C8 | 125.1 (3) | C5—C4—H4 | 122.0 |
O2—C9—C8 | 108.9 (3) | C4—C3—C2 | 122.0 (4) |
C10—C11—H11A | 109.5 | C4—C3—H3 | 119.0 |
C10—C11—H11B | 109.5 | C2—C3—H3 | 119.0 |
H11A—C11—H11B | 109.5 | C2—C1—C6 | 117.5 (3) |
C10—C11—H11C | 109.5 | C2—C1—H1 | 121.2 |
H11A—C11—H11C | 109.5 | C6—C1—H1 | 121.2 |
H11B—C11—H11C | 109.5 | C1—C2—C3 | 121.8 (4) |
N2—C8—C9 | 111.5 (3) | C1—C2—H2 | 119.1 |
N2—C8—H8A | 109.3 | C3—C2—H2 | 119.1 |
C9—C8—H8A | 109.3 | N1—Cu1—I1 | 110.98 (8) |
N2—C8—H8B | 109.3 | N1—Cu1—I1iii | 104.30 (9) |
C9—C8—H8B | 109.3 | I1—Cu1—I1iii | 114.311 (17) |
H8A—C8—H8B | 108.0 | N1—Cu1—Cu1iii | 138.82 (8) |
C11—C10—O2 | 108.8 (4) | I1—Cu1—Cu1iii | 110.146 (17) |
C11—C10—H10A | 109.9 | I1iii—Cu1—Cu1iii | 59.43 (4) |
O2—C10—H10A | 109.9 | N1—Cu1—Cu1i | 147.54 (8) |
C11—C10—H10B | 109.9 | I1—Cu1—Cu1i | 60.27 (4) |
O2—C10—H10B | 109.9 | I1iii—Cu1—Cu1i | 60.21 (4) |
H10A—C10—H10B | 108.3 | Cu1iii—Cu1—Cu1i | 61.29 (3) |
C7—N2—C5 | 106.8 (3) | N1—Cu1—I1ii | 103.14 (8) |
C7—N2—C8 | 125.5 (3) | I1—Cu1—I1ii | 110.098 (19) |
C5—N2—C8 | 126.9 (3) | I1iii—Cu1—I1ii | 113.280 (17) |
C7—N1—C6 | 105.1 (3) | Cu1iii—Cu1—I1ii | 59.88 (4) |
C7—N1—Cu1 | 126.8 (2) | Cu1i—Cu1—I1ii | 109.193 (17) |
C6—N1—Cu1 | 127.6 (2) | N1—Cu1—Cu1ii | 147.30 (8) |
N1—C7—N2 | 113.5 (3) | I1—Cu1—Cu1ii | 59.827 (16) |
N1—C7—H7 | 123.2 | I1iii—Cu1—Cu1ii | 107.917 (17) |
N2—C7—H7 | 123.2 | Cu1iii—Cu1—Cu1ii | 59.357 (16) |
C6—C5—N2 | 105.3 (3) | Cu1i—Cu1—Cu1ii | 59.357 (16) |
C6—C5—C4 | 122.3 (3) | I1ii—Cu1—Cu1ii | 58.696 (16) |
N2—C5—C4 | 132.4 (3) | ||
C10—O2—C9—O1 | −0.9 (5) | C5—C6—C1—C2 | −0.7 (5) |
C10—O2—C9—C8 | 176.7 (3) | N1—C6—C1—C2 | 179.2 (3) |
O1—C9—C8—N2 | 1.1 (5) | C6—C1—C2—C3 | 0.0 (6) |
O2—C9—C8—N2 | −176.6 (3) | C4—C3—C2—C1 | 0.4 (6) |
C9—O2—C10—C11 | −150.6 (4) | C7—N1—Cu1—I1 | 135.7 (3) |
C9—C8—N2—C7 | 68.8 (4) | C6—N1—Cu1—I1 | −54.4 (3) |
C9—C8—N2—C5 | −100.2 (4) | C7—N1—Cu1—I1iii | 12.1 (3) |
C6—N1—C7—N2 | 1.2 (4) | C6—N1—Cu1—I1iii | −177.9 (3) |
Cu1—N1—C7—N2 | 173.0 (2) | C7—N1—Cu1—Cu1iii | −47.5 (3) |
C5—N2—C7—N1 | −1.7 (4) | C6—N1—Cu1—Cu1iii | 122.5 (2) |
C8—N2—C7—N1 | −172.6 (3) | C7—N1—Cu1—Cu1i | 68.4 (3) |
C7—N2—C5—C6 | 1.5 (3) | C6—N1—Cu1—Cu1i | −121.6 (3) |
C8—N2—C5—C6 | 172.1 (3) | C7—N1—Cu1—I1ii | −106.4 (3) |
C7—N2—C5—C4 | 179.3 (4) | C6—N1—Cu1—I1ii | 63.5 (3) |
C8—N2—C5—C4 | −10.0 (6) | C7—N1—Cu1—Cu1ii | −157.8 (2) |
N2—C5—C6—C1 | 179.2 (3) | C6—N1—Cu1—Cu1ii | 12.1 (4) |
C4—C5—C6—C1 | 1.0 (5) | Cu1i—I1—Cu1—N1 | −145.25 (9) |
N2—C5—C6—N1 | −0.8 (4) | Cu1ii—I1—Cu1—N1 | 145.04 (9) |
C4—C5—C6—N1 | −178.9 (3) | Cu1i—I1—Cu1—I1iii | −27.64 (3) |
C7—N1—C6—C1 | 179.8 (4) | Cu1ii—I1—Cu1—I1iii | −97.34 (2) |
Cu1—N1—C6—C1 | 8.2 (5) | Cu1i—I1—Cu1—Cu1iii | 36.98 (3) |
C7—N1—C6—C5 | −0.2 (4) | Cu1ii—I1—Cu1—Cu1iii | −32.73 (3) |
Cu1—N1—C6—C5 | −171.9 (2) | Cu1ii—I1—Cu1—Cu1i | −69.703 (11) |
C6—C5—C4—C3 | −0.6 (5) | Cu1i—I1—Cu1—I1ii | 101.19 (3) |
N2—C5—C4—C3 | −178.2 (3) | Cu1ii—I1—Cu1—I1ii | 31.49 (3) |
C5—C4—C3—C2 | −0.1 (6) | Cu1i—I1—Cu1—Cu1ii | 69.703 (11) |
Symmetry codes: (i) y+1/4, −x+7/4, −z+3/4; (ii) −x+2, −y+3/2, z; (iii) −y+7/4, x−1/4, −z+3/4. |
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10A···O1iv | 0.97 | 2.60 | 3.531 (5) | 162 |
Symmetry code: (iv) y−1/4, −x+7/4, z−1/4. |
Experimental details
Crystal data | |
Chemical formula | [Cu4I4(C11H12N2O2)4] |
Mr | 1578.66 |
Crystal system, space group | Tetragonal, I41/a |
Temperature (K) | 296 |
a, c (Å) | 21.196 (11), 11.581 (7) |
V (Å3) | 5203 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 4.04 |
Crystal size (mm) | 0.24 × 0.22 × 0.18 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2007) |
Tmin, Tmax | 0.768, 0.784 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13042, 2422, 2018 |
Rint | 0.046 |
(sin θ/λ)max (Å−1) | 0.606 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.023, 0.053, 1.03 |
No. of reflections | 2422 |
No. of parameters | 155 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.35, −0.32 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10A···O1i | 0.97 | 2.60 | 3.531 (5) | 162 |
Symmetry code: (i) y−1/4, −x+7/4, z−1/4. |
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Benzimidazoyl-based ligands have wide applications in physiological and pharmacological fields, such as treatment of hypoglycemia, inhibitory activity for the lymphoma of Burkitt, antimicrobial activity and other effects (Ramla et al., 2007; Barreca et al., 2007; Cetinkaya et al., 1999). Similarly, some metal complexes of benzimidazoyl derivatives possess interesting activities such as anti-viral, anti-cancers and anti-fungal activities (Snyderwine et al., 1997; Skog & Solyakov,2002; Garner et al., 1999). In particular, copper complexes are often used as chemical models of copper proteins and copper enzymes (Sorrell, 1989). Up to now, a number of structures of copper complexes involving the benzimidazol group have been reported (Sun et al., 2011; Liu et al., 2011; Toth et al., 1987), but no crystal structure of copper(I) complex based on ethyl 2-(1H- benzimidazol-1-yl)acetate is available. In order to contribute to this research field, we report herein the crystal structure of the title tetranuclear cubane-type complex.
In the title complex (Fig. 1), each copper(I) metal of the Cu4I4 core is coordinated by three µ3-iodide ions and a nitrogen atom of a benzimidazole ring system in a distorted tetrahedral geometry. The deviation from the ideal geometry can be indicated by the range [104.30 (9)–114.311 (17) °] of the bond angles around the metal. The Cu—N bond length is 2.038 (3) Å, and the Cu—I bond lengths fall in the range are 2.715 (14)–2.733 (14) %A. In the crystal structure (Fig. 2), complex molecules are connected into a three-dimensional network by C—H···O hydrogen bonds (Table 1) involving H and O atoms of adjacent ethyl acetate groups.