organic compounds
4-Methyl-N-(9-methyl-9-azabicyclo[3.3.1]non-3-yl)benzamide
aDepartment of Medicinal Chemistry, School of Pharmacy, Second Military Medical University, Shanghai 200433, People's Republic of China
*Correspondence e-mail: yfchai2003c@163.com
The 17H24N2O, contains three independent molecules. In the crystal, molecules are linked by weak N—H⋯O hydrogen bonds into chains parallel to the c axis.
of the title compound, CRelated literature
For background to our work to design and synthesize a series of potent 5-HT3 receptor antagonists, see: Bermudez et al. (1990); Vernekar et al. (2010); Yang et al. (2010).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1999); cell SAINT (Bruker, 1999); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536812017795/vm2165sup1.cif
contains datablocks I, global. DOI:Supporting information file. DOI: 10.1107/S1600536812017795/vm2165Isup2.cdx
Structure factors: contains datablock I. DOI: 10.1107/S1600536812017795/vm2165Isup3.hkl
Supporting information file. DOI: 10.1107/S1600536812017795/vm2165Isup4.cml
A solution of 9-methyl-9-azabicyclo[3.3.1]nonan-3-one (0.03 mol) in ethanol (150 ml) was added dropwise to a solution of sodium acetate (0.06 mol) and hydroxylamine hydrochloride (0.06 mol) in ethanol (200 ml) under stirring, and refluxed for 4 hr to get crude products, which was recrystallized from ethyl acetate to give pure 9-methyl-9-azabicyclo[3.3.1]nonan-3-one (3.8 g, yield 75.2%). To a solution of LiAlH4 (0.066 mol) in anhydrous tetrahydrofuran (THF, 50 ml) a solution of concentrated sulfuric acid (3.0 ml) and THF (12 ml) was added dropwise at -10°C and stirred for 1 hr. To thisabove reaction mixture, a solution of 9-methyl-9-azbicyclo[3.3.1]non-3-ylamine (0.022 mol) in anhydrous THF (70 ml) was added dropwise at 30-35°C and stirred. After reaction, the reaction mixture was evaporated at vacuum to remove solvent to give 3-amine-9-methyl-9-azabicyclo[3.3.1]nonane (2.9 g, yield 78.3%). To a solution of 3-amine-9-methyl-9-azabicyclo[3.3.1]nonane (0.013 mol) and triethylamine (0.013 mol) in dichloromethane (20 ml), a mixture of 4-methylbenzoyl chloride (0.016 mol) and dichloromethane (5 ml) was added dropwise and stirred to obtain crude product, which was recrystallized from ethyl acetate to give pure 4-methyl-N-(9-methyl-9-azabicyclo[3.3.1]non-3-yl)-benzenecarboxamide (2.9 g, yield 81%).
All hydrogen atoms were placed in calculated positions using a riding model, with d(C—H) = 0.93 Å for aromatic, 0.97 Å for CH2 and 0.96 Å for CH3 groups and d(N—H) = 0.86 Å for NH, and with Uiso(H) = 1.2Ueq(C) and Uiso(H) = 1.5Ueq(N).
Data collection: SMART (Bruker, 1999); cell
SAINT (Bruker, 1999); data reduction: SAINT (Bruker, 1999); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C17H24N2O | F(000) = 1776 |
Mr = 272.38 | Dx = 1.166 Mg m−3 |
Monoclinic, Cc | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: C -2yc | Cell parameters from 2865 reflections |
a = 38.68 (2) Å | θ = 2.3–24.1° |
b = 12.300 (7) Å | µ = 0.07 mm−1 |
c = 9.975 (5) Å | T = 293 K |
β = 101.263 (7)° | Prism, colorless |
V = 4654 (4) Å3 | 0.25 × 0.15 × 0.10 mm |
Z = 12 |
Bruker SMART CCD area-detector diffractometer | 6399 independent reflections |
Radiation source: fine-focus sealed tube | 4035 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.049 |
phi and ω scans | θmax = 26.0°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Bruker, 1999) | h = −36→47 |
Tmin = 0.982, Tmax = 0.993 | k = −15→15 |
10320 measured reflections | l = −12→11 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.051 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.151 | w = 1/[σ2(Fo2) + (0.0788P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.96 | (Δ/σ)max = 0.001 |
6399 reflections | Δρmax = 0.20 e Å−3 |
556 parameters | Δρmin = −0.23 e Å−3 |
5 restraints | Absolute structure: Flack, H. D. (1983). Acta Cryst. A39, 876–881. |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −3.4 (17) |
C17H24N2O | V = 4654 (4) Å3 |
Mr = 272.38 | Z = 12 |
Monoclinic, Cc | Mo Kα radiation |
a = 38.68 (2) Å | µ = 0.07 mm−1 |
b = 12.300 (7) Å | T = 293 K |
c = 9.975 (5) Å | 0.25 × 0.15 × 0.10 mm |
β = 101.263 (7)° |
Bruker SMART CCD area-detector diffractometer | 6399 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1999) | 4035 reflections with I > 2σ(I) |
Tmin = 0.982, Tmax = 0.993 | Rint = 0.049 |
10320 measured reflections |
R[F2 > 2σ(F2)] = 0.051 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.151 | Δρmax = 0.20 e Å−3 |
S = 0.96 | Δρmin = −0.23 e Å−3 |
6399 reflections | Absolute structure: Flack, H. D. (1983). Acta Cryst. A39, 876–881. |
556 parameters | Absolute structure parameter: −3.4 (17) |
5 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.58077 (8) | 0.1326 (3) | 0.3192 (3) | 0.0543 (8) | |
N2 | 0.48226 (9) | 0.0124 (3) | 0.2549 (3) | 0.0609 (9) | |
H2' | 0.4764 (11) | −0.005 (3) | 0.330 (3) | 0.073* | |
O1 | 0.46853 (7) | 0.0334 (3) | 0.0285 (3) | 0.0705 (8) | |
C1 | 0.46056 (10) | 0.0018 (3) | 0.1364 (4) | 0.0528 (10) | |
C2 | 0.42609 (10) | −0.0505 (3) | 0.1370 (4) | 0.0488 (9) | |
C3 | 0.39749 (11) | −0.0253 (3) | 0.0334 (4) | 0.0589 (11) | |
H3 | 0.4003 | 0.0242 | −0.0343 | 0.071* | |
C4 | 0.36548 (11) | −0.0725 (4) | 0.0305 (5) | 0.0670 (12) | |
H4 | 0.3467 | −0.0528 | −0.0383 | 0.080* | |
C5 | 0.35993 (10) | −0.1489 (3) | 0.1261 (5) | 0.0627 (12) | |
C6 | 0.38855 (11) | −0.1749 (3) | 0.2235 (4) | 0.0619 (11) | |
H6 | 0.3862 | −0.2279 | 0.2876 | 0.074* | |
C7 | 0.42059 (10) | −0.1264 (3) | 0.2308 (4) | 0.0558 (10) | |
H7 | 0.4391 | −0.1454 | 0.3012 | 0.067* | |
C8 | 0.32499 (12) | −0.2024 (4) | 0.1200 (6) | 0.0900 (16) | |
H8A | 0.3085 | −0.1503 | 0.1421 | 0.135* | |
H8B | 0.3275 | −0.2612 | 0.1843 | 0.135* | |
H8C | 0.3166 | −0.2300 | 0.0295 | 0.135* | |
C9 | 0.51759 (10) | 0.0560 (3) | 0.2706 (4) | 0.0531 (10) | |
H9 | 0.5255 | 0.0471 | 0.1837 | 0.064* | |
C10 | 0.51907 (11) | 0.1753 (3) | 0.3063 (4) | 0.0626 (11) | |
H10A | 0.5076 | 0.1868 | 0.3832 | 0.075* | |
H10B | 0.5062 | 0.2161 | 0.2293 | 0.075* | |
C11 | 0.55702 (11) | 0.2186 (3) | 0.3427 (4) | 0.0613 (11) | |
H11 | 0.5592 | 0.2782 | 0.2797 | 0.074* | |
C12 | 0.56556 (13) | 0.2638 (3) | 0.4878 (5) | 0.0736 (13) | |
H12A | 0.5885 | 0.2986 | 0.5031 | 0.088* | |
H12B | 0.5482 | 0.3185 | 0.4986 | 0.088* | |
C13 | 0.56561 (13) | 0.1746 (4) | 0.5929 (4) | 0.0740 (13) | |
H13A | 0.5746 | 0.2032 | 0.6837 | 0.089* | |
H13B | 0.5417 | 0.1496 | 0.5898 | 0.089* | |
C14 | 0.58816 (11) | 0.0809 (4) | 0.5652 (5) | 0.0715 (13) | |
H14A | 0.5849 | 0.0204 | 0.6238 | 0.086* | |
H14B | 0.6128 | 0.1023 | 0.5874 | 0.086* | |
C15 | 0.57904 (10) | 0.0439 (3) | 0.4144 (4) | 0.0566 (10) | |
H15 | 0.5963 | −0.0112 | 0.4007 | 0.068* | |
C16 | 0.54243 (10) | −0.0080 (3) | 0.3798 (4) | 0.0531 (10) | |
H16A | 0.5446 | −0.0817 | 0.3478 | 0.064* | |
H16B | 0.5325 | −0.0116 | 0.4619 | 0.064* | |
C17 | 0.61658 (12) | 0.1692 (4) | 0.3199 (5) | 0.0852 (15) | |
H17A | 0.6275 | 0.1913 | 0.4106 | 0.128* | |
H17B | 0.6160 | 0.2297 | 0.2586 | 0.128* | |
H17C | 0.6299 | 0.1109 | 0.2909 | 0.128* | |
N3 | 0.40602 (8) | 0.3625 (3) | 0.0728 (3) | 0.0606 (9) | |
N4 | 0.30958 (8) | 0.4950 (3) | 0.0227 (3) | 0.0552 (8) | |
H4' | 0.3019 (10) | 0.506 (3) | 0.097 (3) | 0.066* | |
O2 | 0.29556 (7) | 0.4833 (3) | −0.2040 (3) | 0.0750 (9) | |
C18 | 0.28783 (9) | 0.5105 (3) | −0.0962 (4) | 0.0521 (10) | |
C19 | 0.25307 (9) | 0.5615 (3) | −0.0922 (4) | 0.0477 (9) | |
C20 | 0.24716 (10) | 0.6300 (3) | 0.0099 (4) | 0.0552 (10) | |
H20 | 0.2655 | 0.6458 | 0.0823 | 0.066* | |
C21 | 0.21491 (11) | 0.6750 (3) | 0.0068 (4) | 0.0605 (11) | |
H21 | 0.2120 | 0.7227 | 0.0761 | 0.073* | |
C22 | 0.18671 (10) | 0.6526 (3) | −0.0946 (4) | 0.0565 (10) | |
C23 | 0.19269 (11) | 0.5849 (3) | −0.1974 (5) | 0.0664 (12) | |
H23 | 0.1741 | 0.5693 | −0.2693 | 0.080* | |
C24 | 0.22492 (10) | 0.5399 (3) | −0.1972 (4) | 0.0579 (11) | |
H24 | 0.2280 | 0.4943 | −0.2684 | 0.069* | |
C25 | 0.15105 (12) | 0.7020 (4) | −0.0963 (6) | 0.0857 (15) | |
H25A | 0.1509 | 0.7360 | −0.0098 | 0.129* | |
H25B | 0.1334 | 0.6462 | −0.1125 | 0.129* | |
H25C | 0.1461 | 0.7554 | −0.1677 | 0.129* | |
C26 | 0.34431 (9) | 0.4478 (3) | 0.0351 (4) | 0.0491 (9) | |
H26 | 0.3517 | 0.4550 | −0.0531 | 0.059* | |
C27 | 0.37066 (10) | 0.5075 (3) | 0.1421 (4) | 0.0515 (9) | |
H27A | 0.3617 | 0.5114 | 0.2262 | 0.062* | |
H27B | 0.3733 | 0.5813 | 0.1112 | 0.062* | |
C28 | 0.40679 (10) | 0.4522 (3) | 0.1711 (4) | 0.0564 (10) | |
H28 | 0.4243 | 0.5053 | 0.1541 | 0.068* | |
C29 | 0.41717 (12) | 0.4145 (4) | 0.3186 (4) | 0.0793 (15) | |
H29A | 0.4415 | 0.3904 | 0.3358 | 0.095* | |
H29B | 0.4155 | 0.4753 | 0.3789 | 0.095* | |
C30 | 0.39411 (15) | 0.3229 (4) | 0.3508 (5) | 0.0883 (16) | |
H30A | 0.3708 | 0.3507 | 0.3535 | 0.106* | |
H30B | 0.4040 | 0.2931 | 0.4402 | 0.106* | |
C31 | 0.39119 (16) | 0.2330 (4) | 0.2435 (5) | 0.0894 (16) | |
H31A | 0.4135 | 0.1952 | 0.2533 | 0.107* | |
H31B | 0.3734 | 0.1808 | 0.2577 | 0.107* | |
C32 | 0.38135 (12) | 0.2796 (3) | 0.1010 (4) | 0.0660 (12) | |
H32 | 0.3818 | 0.2199 | 0.0363 | 0.079* | |
C33 | 0.34430 (11) | 0.3284 (3) | 0.0711 (4) | 0.0641 (11) | |
H33A | 0.3300 | 0.2891 | −0.0042 | 0.077* | |
H33B | 0.3336 | 0.3192 | 0.1507 | 0.077* | |
C34 | 0.44072 (13) | 0.3213 (5) | 0.0673 (5) | 0.1015 (19) | |
H34A | 0.4530 | 0.3038 | 0.1579 | 0.152* | |
H34B | 0.4537 | 0.3756 | 0.0287 | 0.152* | |
H34C | 0.4385 | 0.2572 | 0.0114 | 0.152* | |
N5 | 0.24691 (9) | 0.9123 (3) | 0.6198 (3) | 0.0589 (9) | |
N6 | 0.14766 (9) | 1.0004 (3) | 0.4521 (3) | 0.0581 (9) | |
H6' | 0.1420 (11) | 0.983 (3) | 0.367 (2) | 0.070* | |
O3 | 0.13264 (8) | 1.0699 (2) | 0.6410 (3) | 0.0708 (8) | |
C35 | 0.12497 (11) | 1.0463 (3) | 0.5175 (4) | 0.0548 (10) | |
C36 | 0.08923 (10) | 1.0718 (3) | 0.4366 (4) | 0.0527 (9) | |
C37 | 0.07519 (11) | 1.0213 (3) | 0.3145 (4) | 0.0597 (11) | |
H37 | 0.0882 | 0.9685 | 0.2792 | 0.072* | |
C38 | 0.04217 (11) | 1.0486 (3) | 0.2451 (5) | 0.0671 (12) | |
H38 | 0.0330 | 1.0124 | 0.1641 | 0.081* | |
C39 | 0.02218 (11) | 1.1268 (3) | 0.2901 (5) | 0.0662 (12) | |
C40 | 0.03636 (12) | 1.1764 (4) | 0.4127 (5) | 0.0719 (13) | |
H40 | 0.0233 | 1.2290 | 0.4475 | 0.086* | |
C41 | 0.06940 (11) | 1.1500 (3) | 0.4847 (5) | 0.0660 (12) | |
H41 | 0.0784 | 1.1854 | 0.5666 | 0.079* | |
C42 | −0.01294 (13) | 1.1604 (5) | 0.2088 (6) | 0.1033 (18) | |
H42A | −0.0133 | 1.2378 | 0.1961 | 0.155* | |
H42B | −0.0312 | 1.1399 | 0.2568 | 0.155* | |
H42C | −0.0169 | 1.1251 | 0.1213 | 0.155* | |
C43 | 0.18360 (10) | 0.9727 (3) | 0.5173 (4) | 0.0550 (10) | |
H43 | 0.1904 | 1.0192 | 0.5979 | 0.066* | |
C44 | 0.18626 (11) | 0.8552 (3) | 0.5649 (5) | 0.0689 (12) | |
H44A | 0.1755 | 0.8088 | 0.4896 | 0.083* | |
H44B | 0.1731 | 0.8465 | 0.6377 | 0.083* | |
C45 | 0.22420 (11) | 0.8184 (3) | 0.6162 (4) | 0.0586 (11) | |
H45 | 0.2262 | 0.7917 | 0.7100 | 0.070* | |
C46 | 0.23481 (14) | 0.7258 (3) | 0.5295 (5) | 0.0803 (14) | |
H46A | 0.2575 | 0.6972 | 0.5739 | 0.096* | |
H46B | 0.2177 | 0.6675 | 0.5232 | 0.096* | |
C47 | 0.23692 (15) | 0.7642 (4) | 0.3866 (5) | 0.0825 (15) | |
H47A | 0.2477 | 0.7079 | 0.3406 | 0.099* | |
H47B | 0.2133 | 0.7763 | 0.3348 | 0.099* | |
C48 | 0.25764 (13) | 0.8662 (4) | 0.3886 (5) | 0.0762 (13) | |
H48A | 0.2549 | 0.8945 | 0.2964 | 0.091* | |
H48B | 0.2824 | 0.8505 | 0.4213 | 0.091* | |
C49 | 0.24582 (11) | 0.9519 (3) | 0.4801 (4) | 0.0606 (11) | |
H49 | 0.2621 | 1.0134 | 0.4857 | 0.073* | |
C50 | 0.20874 (11) | 0.9945 (3) | 0.4227 (4) | 0.0607 (11) | |
H50A | 0.2099 | 1.0722 | 0.4075 | 0.073* | |
H50B | 0.1999 | 0.9601 | 0.3352 | 0.073* | |
C51 | 0.28263 (12) | 0.8941 (4) | 0.6964 (5) | 0.0897 (16) | |
H51A | 0.2938 | 0.8385 | 0.6523 | 0.134* | |
H51B | 0.2817 | 0.8716 | 0.7878 | 0.134* | |
H51C | 0.2959 | 0.9603 | 0.6995 | 0.134* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0452 (19) | 0.0620 (19) | 0.055 (2) | −0.0041 (16) | 0.0069 (15) | 0.0034 (16) |
N2 | 0.050 (2) | 0.103 (3) | 0.0281 (18) | −0.0168 (18) | 0.0040 (15) | −0.0049 (18) |
O1 | 0.0581 (18) | 0.121 (2) | 0.0312 (16) | −0.0092 (16) | 0.0058 (13) | 0.0028 (15) |
C1 | 0.044 (2) | 0.074 (3) | 0.038 (3) | 0.0028 (19) | 0.0038 (18) | −0.0093 (19) |
C2 | 0.045 (2) | 0.063 (2) | 0.037 (2) | 0.0000 (18) | 0.0044 (17) | −0.0100 (17) |
C3 | 0.054 (3) | 0.068 (2) | 0.049 (2) | −0.003 (2) | −0.003 (2) | −0.0019 (19) |
C4 | 0.051 (3) | 0.073 (3) | 0.068 (3) | 0.004 (2) | −0.011 (2) | −0.003 (2) |
C5 | 0.046 (3) | 0.058 (2) | 0.082 (3) | −0.005 (2) | 0.007 (2) | −0.015 (2) |
C6 | 0.062 (3) | 0.069 (3) | 0.054 (3) | −0.011 (2) | 0.011 (2) | −0.003 (2) |
C7 | 0.047 (2) | 0.078 (3) | 0.040 (2) | 0.001 (2) | 0.0022 (17) | 0.000 (2) |
C8 | 0.061 (3) | 0.080 (3) | 0.126 (5) | −0.009 (2) | 0.010 (3) | −0.005 (3) |
C9 | 0.047 (2) | 0.080 (3) | 0.032 (2) | −0.009 (2) | 0.0050 (16) | −0.0006 (18) |
C10 | 0.058 (3) | 0.070 (3) | 0.056 (3) | 0.016 (2) | 0.0031 (19) | 0.010 (2) |
C11 | 0.066 (3) | 0.057 (2) | 0.059 (3) | −0.004 (2) | 0.010 (2) | 0.010 (2) |
C12 | 0.086 (3) | 0.064 (3) | 0.070 (3) | −0.005 (2) | 0.012 (2) | −0.013 (2) |
C13 | 0.082 (3) | 0.090 (3) | 0.046 (3) | −0.009 (3) | 0.003 (2) | −0.010 (2) |
C14 | 0.054 (3) | 0.087 (3) | 0.064 (3) | −0.010 (2) | −0.010 (2) | 0.015 (2) |
C15 | 0.047 (2) | 0.063 (2) | 0.056 (3) | 0.0041 (19) | 0.0013 (18) | 0.0006 (19) |
C16 | 0.059 (3) | 0.059 (2) | 0.041 (2) | −0.0020 (18) | 0.0070 (17) | −0.0030 (17) |
C17 | 0.063 (3) | 0.097 (3) | 0.095 (4) | −0.017 (3) | 0.015 (3) | 0.003 (3) |
N3 | 0.056 (2) | 0.082 (2) | 0.044 (2) | 0.0203 (19) | 0.0089 (15) | −0.0063 (17) |
N4 | 0.048 (2) | 0.083 (2) | 0.0340 (19) | 0.0071 (16) | 0.0073 (15) | 0.0019 (16) |
O2 | 0.0605 (19) | 0.135 (3) | 0.0301 (16) | 0.0110 (17) | 0.0112 (13) | −0.0036 (16) |
C18 | 0.044 (2) | 0.068 (2) | 0.043 (2) | −0.0034 (18) | 0.0063 (18) | 0.0051 (19) |
C19 | 0.044 (2) | 0.058 (2) | 0.041 (2) | −0.0037 (17) | 0.0076 (17) | 0.0080 (18) |
C20 | 0.044 (2) | 0.073 (3) | 0.045 (2) | −0.005 (2) | −0.0009 (17) | −0.004 (2) |
C21 | 0.056 (3) | 0.071 (2) | 0.054 (3) | 0.002 (2) | 0.010 (2) | −0.008 (2) |
C22 | 0.046 (2) | 0.053 (2) | 0.069 (3) | −0.0010 (18) | 0.007 (2) | 0.005 (2) |
C23 | 0.052 (3) | 0.070 (3) | 0.067 (3) | 0.002 (2) | −0.014 (2) | 0.000 (2) |
C24 | 0.054 (3) | 0.067 (2) | 0.046 (2) | 0.006 (2) | −0.0058 (19) | −0.0047 (19) |
C25 | 0.063 (3) | 0.082 (3) | 0.109 (4) | 0.012 (3) | 0.009 (3) | −0.009 (3) |
C26 | 0.043 (2) | 0.064 (2) | 0.041 (2) | 0.0059 (18) | 0.0099 (16) | 0.0014 (18) |
C27 | 0.048 (2) | 0.058 (2) | 0.048 (2) | 0.0019 (18) | 0.0087 (17) | −0.0035 (18) |
C28 | 0.048 (2) | 0.076 (3) | 0.042 (2) | 0.002 (2) | 0.0009 (17) | −0.004 (2) |
C29 | 0.070 (3) | 0.108 (4) | 0.049 (3) | 0.025 (3) | −0.015 (2) | −0.016 (3) |
C30 | 0.116 (4) | 0.099 (4) | 0.048 (3) | 0.021 (3) | 0.010 (3) | 0.014 (3) |
C31 | 0.126 (5) | 0.076 (3) | 0.064 (3) | 0.028 (3) | 0.013 (3) | 0.011 (3) |
C32 | 0.086 (3) | 0.059 (2) | 0.052 (3) | 0.013 (2) | 0.010 (2) | −0.0075 (19) |
C33 | 0.070 (3) | 0.069 (2) | 0.051 (2) | −0.013 (2) | 0.008 (2) | −0.005 (2) |
C34 | 0.076 (4) | 0.146 (5) | 0.078 (4) | 0.051 (4) | 0.005 (3) | −0.015 (3) |
N5 | 0.057 (2) | 0.072 (2) | 0.0435 (19) | 0.0100 (17) | −0.0014 (15) | −0.0080 (17) |
N6 | 0.054 (2) | 0.082 (2) | 0.0374 (19) | 0.0109 (18) | 0.0061 (16) | −0.0024 (18) |
O3 | 0.0744 (19) | 0.100 (2) | 0.0400 (18) | 0.0044 (16) | 0.0157 (14) | −0.0029 (15) |
C35 | 0.057 (3) | 0.060 (2) | 0.049 (3) | −0.002 (2) | 0.014 (2) | 0.0064 (19) |
C36 | 0.052 (2) | 0.055 (2) | 0.054 (3) | −0.0003 (19) | 0.0161 (18) | 0.0068 (19) |
C37 | 0.057 (3) | 0.058 (2) | 0.065 (3) | 0.000 (2) | 0.012 (2) | 0.003 (2) |
C38 | 0.055 (3) | 0.066 (2) | 0.076 (3) | −0.008 (2) | 0.003 (2) | 0.000 (2) |
C39 | 0.049 (3) | 0.069 (3) | 0.082 (3) | −0.001 (2) | 0.014 (2) | 0.012 (3) |
C40 | 0.073 (3) | 0.069 (3) | 0.081 (4) | 0.012 (2) | 0.034 (3) | 0.001 (2) |
C41 | 0.064 (3) | 0.072 (3) | 0.064 (3) | 0.004 (2) | 0.020 (2) | −0.001 (2) |
C42 | 0.061 (3) | 0.114 (4) | 0.131 (5) | 0.012 (3) | 0.008 (3) | 0.004 (4) |
C43 | 0.054 (3) | 0.064 (2) | 0.048 (2) | 0.0013 (19) | 0.0100 (18) | 0.0045 (18) |
C44 | 0.070 (3) | 0.068 (3) | 0.068 (3) | −0.007 (2) | 0.012 (2) | 0.009 (2) |
C45 | 0.075 (3) | 0.067 (2) | 0.034 (2) | 0.010 (2) | 0.0103 (19) | 0.0074 (18) |
C46 | 0.095 (4) | 0.058 (3) | 0.084 (4) | 0.009 (2) | 0.008 (3) | −0.007 (2) |
C47 | 0.115 (4) | 0.081 (3) | 0.051 (3) | 0.025 (3) | 0.016 (3) | −0.014 (2) |
C48 | 0.077 (3) | 0.097 (3) | 0.059 (3) | 0.025 (3) | 0.025 (2) | 0.008 (2) |
C49 | 0.057 (3) | 0.063 (2) | 0.061 (3) | 0.001 (2) | 0.009 (2) | 0.003 (2) |
C50 | 0.060 (3) | 0.061 (2) | 0.061 (3) | 0.005 (2) | 0.012 (2) | 0.007 (2) |
C51 | 0.073 (3) | 0.105 (4) | 0.078 (4) | 0.021 (3) | −0.015 (3) | −0.017 (3) |
N1—C11 | 1.449 (5) | C26—C27 | 1.515 (5) |
N1—C17 | 1.456 (5) | C26—H26 | 0.9800 |
N1—C15 | 1.456 (5) | C27—C28 | 1.530 (5) |
N2—C1 | 1.315 (5) | C27—H27A | 0.9700 |
N2—C9 | 1.448 (5) | C27—H27B | 0.9700 |
N2—H2' | 0.846 (19) | C28—C29 | 1.520 (6) |
O1—C1 | 1.239 (5) | C28—H28 | 0.9800 |
C1—C2 | 1.482 (5) | C29—C30 | 1.511 (7) |
C2—C7 | 1.367 (5) | C29—H29A | 0.9700 |
C2—C3 | 1.394 (5) | C29—H29B | 0.9700 |
C3—C4 | 1.363 (6) | C30—C31 | 1.528 (7) |
C3—H3 | 0.9300 | C30—H30A | 0.9700 |
C4—C5 | 1.385 (6) | C30—H30B | 0.9700 |
C4—H4 | 0.9300 | C31—C32 | 1.510 (6) |
C5—C6 | 1.361 (5) | C31—H31A | 0.9700 |
C5—C8 | 1.493 (6) | C31—H31B | 0.9700 |
C6—C7 | 1.365 (5) | C32—C33 | 1.528 (6) |
C6—H6 | 0.9300 | C32—H32 | 0.9800 |
C7—H7 | 0.9300 | C33—H33A | 0.9700 |
C8—H8A | 0.9600 | C33—H33B | 0.9700 |
C8—H8B | 0.9600 | C34—H34A | 0.9600 |
C8—H8C | 0.9600 | C34—H34B | 0.9600 |
C9—C10 | 1.508 (5) | C34—H34C | 0.9600 |
C9—C16 | 1.523 (5) | N5—C45 | 1.447 (5) |
C9—H9 | 0.9800 | N5—C51 | 1.459 (5) |
C10—C11 | 1.537 (6) | N5—C49 | 1.469 (5) |
C10—H10A | 0.9700 | N6—C35 | 1.319 (5) |
C10—H10B | 0.9700 | N6—C43 | 1.456 (5) |
C11—C12 | 1.525 (6) | N6—H6' | 0.864 (19) |
C11—H11 | 0.9800 | O3—C35 | 1.243 (5) |
C12—C13 | 1.518 (6) | C35—C36 | 1.492 (5) |
C12—H12A | 0.9700 | C36—C41 | 1.374 (5) |
C12—H12B | 0.9700 | C36—C37 | 1.381 (6) |
C13—C14 | 1.503 (6) | C37—C38 | 1.370 (5) |
C13—H13A | 0.9700 | C37—H37 | 0.9300 |
C13—H13B | 0.9700 | C38—C39 | 1.364 (6) |
C14—C15 | 1.545 (6) | C38—H38 | 0.9300 |
C14—H14A | 0.9700 | C39—C40 | 1.381 (6) |
C14—H14B | 0.9700 | C39—C42 | 1.498 (6) |
C15—C16 | 1.530 (5) | C40—C41 | 1.377 (6) |
C15—H15 | 0.9800 | C40—H40 | 0.9300 |
C16—H16A | 0.9700 | C41—H41 | 0.9300 |
C16—H16B | 0.9700 | C42—H42A | 0.9600 |
C17—H17A | 0.9600 | C42—H42B | 0.9600 |
C17—H17B | 0.9600 | C42—H42C | 0.9600 |
C17—H17C | 0.9600 | C43—C50 | 1.506 (6) |
N3—C34 | 1.446 (5) | C43—C44 | 1.518 (6) |
N3—C32 | 1.461 (5) | C43—H43 | 0.9800 |
N3—C28 | 1.472 (5) | C44—C45 | 1.526 (6) |
N4—C18 | 1.327 (5) | C44—H44A | 0.9700 |
N4—C26 | 1.447 (5) | C44—H44B | 0.9700 |
N4—H4' | 0.859 (19) | C45—C46 | 1.534 (6) |
O2—C18 | 1.218 (5) | C45—H45 | 0.9800 |
C18—C19 | 1.491 (5) | C46—C47 | 1.520 (7) |
C19—C20 | 1.375 (5) | C46—H46A | 0.9700 |
C19—C24 | 1.382 (5) | C46—H46B | 0.9700 |
C20—C21 | 1.360 (5) | C47—C48 | 1.487 (7) |
C20—H20 | 0.9300 | C47—H47A | 0.9700 |
C21—C22 | 1.362 (5) | C47—H47B | 0.9700 |
C21—H21 | 0.9300 | C48—C49 | 1.521 (6) |
C22—C23 | 1.375 (6) | C48—H48A | 0.9700 |
C22—C25 | 1.504 (6) | C48—H48B | 0.9700 |
C23—C24 | 1.364 (6) | C49—C50 | 1.529 (5) |
C23—H23 | 0.9300 | C49—H49 | 0.9800 |
C24—H24 | 0.9300 | C50—H50A | 0.9700 |
C25—H25A | 0.9600 | C50—H50B | 0.9700 |
C25—H25B | 0.9600 | C51—H51A | 0.9600 |
C25—H25C | 0.9600 | C51—H51B | 0.9600 |
C26—C33 | 1.512 (5) | C51—H51C | 0.9600 |
C11—N1—C17 | 114.0 (3) | H27A—C27—H27B | 107.9 |
C11—N1—C15 | 109.3 (3) | N3—C28—C29 | 112.5 (3) |
C17—N1—C15 | 113.2 (3) | N3—C28—C27 | 108.0 (3) |
C1—N2—C9 | 123.8 (3) | C29—C28—C27 | 112.2 (4) |
C1—N2—H2' | 122 (3) | N3—C28—H28 | 108.0 |
C9—N2—H2' | 114 (3) | C29—C28—H28 | 108.0 |
O1—C1—N2 | 121.8 (4) | C27—C28—H28 | 108.0 |
O1—C1—C2 | 121.1 (3) | C30—C29—C28 | 112.2 (4) |
N2—C1—C2 | 117.1 (4) | C30—C29—H29A | 109.2 |
C7—C2—C3 | 116.9 (4) | C28—C29—H29A | 109.2 |
C7—C2—C1 | 124.1 (3) | C30—C29—H29B | 109.2 |
C3—C2—C1 | 119.0 (4) | C28—C29—H29B | 109.2 |
C4—C3—C2 | 120.5 (4) | H29A—C29—H29B | 107.9 |
C4—C3—H3 | 119.8 | C29—C30—C31 | 110.9 (4) |
C2—C3—H3 | 119.8 | C29—C30—H30A | 109.5 |
C3—C4—C5 | 122.5 (4) | C31—C30—H30A | 109.5 |
C3—C4—H4 | 118.8 | C29—C30—H30B | 109.5 |
C5—C4—H4 | 118.8 | C31—C30—H30B | 109.5 |
C6—C5—C4 | 115.9 (4) | H30A—C30—H30B | 108.1 |
C6—C5—C8 | 121.9 (4) | C32—C31—C30 | 110.8 (4) |
C4—C5—C8 | 122.1 (4) | C32—C31—H31A | 109.5 |
C5—C6—C7 | 122.6 (4) | C30—C31—H31A | 109.5 |
C5—C6—H6 | 118.7 | C32—C31—H31B | 109.5 |
C7—C6—H6 | 118.7 | C30—C31—H31B | 109.5 |
C6—C7—C2 | 121.6 (3) | H31A—C31—H31B | 108.1 |
C6—C7—H7 | 119.2 | N3—C32—C31 | 113.1 (4) |
C2—C7—H7 | 119.2 | N3—C32—C33 | 108.2 (3) |
C5—C8—H8A | 109.5 | C31—C32—C33 | 112.8 (4) |
C5—C8—H8B | 109.5 | N3—C32—H32 | 107.5 |
H8A—C8—H8B | 109.5 | C31—C32—H32 | 107.5 |
C5—C8—H8C | 109.5 | C33—C32—H32 | 107.5 |
H8A—C8—H8C | 109.5 | C26—C33—C32 | 112.6 (3) |
H8B—C8—H8C | 109.5 | C26—C33—H33A | 109.1 |
N2—C9—C10 | 112.2 (3) | C32—C33—H33A | 109.1 |
N2—C9—C16 | 109.6 (3) | C26—C33—H33B | 109.1 |
C10—C9—C16 | 110.1 (3) | C32—C33—H33B | 109.1 |
N2—C9—H9 | 108.2 | H33A—C33—H33B | 107.8 |
C10—C9—H9 | 108.2 | N3—C34—H34A | 109.5 |
C16—C9—H9 | 108.2 | N3—C34—H34B | 109.5 |
C9—C10—C11 | 112.5 (3) | H34A—C34—H34B | 109.5 |
C9—C10—H10A | 109.1 | N3—C34—H34C | 109.5 |
C11—C10—H10A | 109.1 | H34A—C34—H34C | 109.5 |
C9—C10—H10B | 109.1 | H34B—C34—H34C | 109.5 |
C11—C10—H10B | 109.1 | C45—N5—C51 | 113.5 (3) |
H10A—C10—H10B | 107.8 | C45—N5—C49 | 109.6 (3) |
N1—C11—C12 | 113.2 (3) | C51—N5—C49 | 113.3 (4) |
N1—C11—C10 | 108.4 (3) | C35—N6—C43 | 123.3 (3) |
C12—C11—C10 | 111.7 (4) | C35—N6—H6' | 122 (3) |
N1—C11—H11 | 107.8 | C43—N6—H6' | 115 (3) |
C12—C11—H11 | 107.8 | O3—C35—N6 | 122.5 (4) |
C10—C11—H11 | 107.8 | O3—C35—C36 | 120.2 (4) |
C13—C12—C11 | 111.2 (3) | N6—C35—C36 | 117.3 (4) |
C13—C12—H12A | 109.4 | C41—C36—C37 | 118.3 (4) |
C11—C12—H12A | 109.4 | C41—C36—C35 | 118.7 (4) |
C13—C12—H12B | 109.4 | C37—C36—C35 | 123.1 (4) |
C11—C12—H12B | 109.4 | C38—C37—C36 | 120.1 (4) |
H12A—C12—H12B | 108.0 | C38—C37—H37 | 119.9 |
C14—C13—C12 | 110.5 (4) | C36—C37—H37 | 119.9 |
C14—C13—H13A | 109.6 | C39—C38—C37 | 122.6 (4) |
C12—C13—H13A | 109.6 | C39—C38—H38 | 118.7 |
C14—C13—H13B | 109.6 | C37—C38—H38 | 118.7 |
C12—C13—H13B | 109.6 | C38—C39—C40 | 116.8 (4) |
H13A—C13—H13B | 108.1 | C38—C39—C42 | 121.9 (5) |
C13—C14—C15 | 112.0 (3) | C40—C39—C42 | 121.3 (5) |
C13—C14—H14A | 109.2 | C41—C40—C39 | 121.7 (4) |
C15—C14—H14A | 109.2 | C41—C40—H40 | 119.1 |
C13—C14—H14B | 109.2 | C39—C40—H40 | 119.1 |
C15—C14—H14B | 109.2 | C36—C41—C40 | 120.5 (4) |
H14A—C14—H14B | 107.9 | C36—C41—H41 | 119.8 |
N1—C15—C16 | 108.9 (3) | C40—C41—H41 | 119.8 |
N1—C15—C14 | 112.5 (3) | C39—C42—H42A | 109.5 |
C16—C15—C14 | 111.6 (4) | C39—C42—H42B | 109.5 |
N1—C15—H15 | 107.9 | H42A—C42—H42B | 109.5 |
C16—C15—H15 | 107.9 | C39—C42—H42C | 109.5 |
C14—C15—H15 | 107.9 | H42A—C42—H42C | 109.5 |
C9—C16—C15 | 111.9 (3) | H42B—C42—H42C | 109.5 |
C9—C16—H16A | 109.2 | N6—C43—C50 | 110.8 (3) |
C15—C16—H16A | 109.2 | N6—C43—C44 | 111.3 (3) |
C9—C16—H16B | 109.2 | C50—C43—C44 | 110.7 (4) |
C15—C16—H16B | 109.2 | N6—C43—H43 | 108.0 |
H16A—C16—H16B | 107.9 | C50—C43—H43 | 108.0 |
N1—C17—H17A | 109.5 | C44—C43—H43 | 108.0 |
N1—C17—H17B | 109.5 | C43—C44—C45 | 112.9 (3) |
H17A—C17—H17B | 109.5 | C43—C44—H44A | 109.0 |
N1—C17—H17C | 109.5 | C45—C44—H44A | 109.0 |
H17A—C17—H17C | 109.5 | C43—C44—H44B | 109.0 |
H17B—C17—H17C | 109.5 | C45—C44—H44B | 109.0 |
C34—N3—C32 | 114.1 (4) | H44A—C44—H44B | 107.8 |
C34—N3—C28 | 113.0 (3) | N5—C45—C44 | 108.1 (3) |
C32—N3—C28 | 108.9 (3) | N5—C45—C46 | 112.2 (4) |
C18—N4—C26 | 123.4 (3) | C44—C45—C46 | 112.1 (3) |
C18—N4—H4' | 119 (3) | N5—C45—H45 | 108.1 |
C26—N4—H4' | 117 (3) | C44—C45—H45 | 108.1 |
O2—C18—N4 | 121.8 (4) | C46—C45—H45 | 108.1 |
O2—C18—C19 | 121.2 (3) | C47—C46—C45 | 111.6 (3) |
N4—C18—C19 | 117.0 (4) | C47—C46—H46A | 109.3 |
C20—C19—C24 | 117.3 (3) | C45—C46—H46A | 109.3 |
C20—C19—C18 | 124.0 (3) | C47—C46—H46B | 109.3 |
C24—C19—C18 | 118.7 (4) | C45—C46—H46B | 109.3 |
C21—C20—C19 | 121.1 (3) | H46A—C46—H46B | 108.0 |
C21—C20—H20 | 119.4 | C48—C47—C46 | 112.1 (4) |
C19—C20—H20 | 119.4 | C48—C47—H47A | 109.2 |
C20—C21—C22 | 122.2 (4) | C46—C47—H47A | 109.2 |
C20—C21—H21 | 118.9 | C48—C47—H47B | 109.2 |
C22—C21—H21 | 118.9 | C46—C47—H47B | 109.2 |
C21—C22—C23 | 116.7 (4) | H47A—C47—H47B | 107.9 |
C21—C22—C25 | 121.8 (4) | C47—C48—C49 | 111.6 (4) |
C23—C22—C25 | 121.6 (4) | C47—C48—H48A | 109.3 |
C24—C23—C22 | 122.1 (4) | C49—C48—H48A | 109.3 |
C24—C23—H23 | 118.9 | C47—C48—H48B | 109.3 |
C22—C23—H23 | 118.9 | C49—C48—H48B | 109.3 |
C23—C24—C19 | 120.5 (4) | H48A—C48—H48B | 108.0 |
C23—C24—H24 | 119.8 | N5—C49—C48 | 112.5 (3) |
C19—C24—H24 | 119.8 | N5—C49—C50 | 108.6 (3) |
C22—C25—H25A | 109.5 | C48—C49—C50 | 112.5 (3) |
C22—C25—H25B | 109.5 | N5—C49—H49 | 107.7 |
H25A—C25—H25B | 109.5 | C48—C49—H49 | 107.7 |
C22—C25—H25C | 109.5 | C50—C49—H49 | 107.7 |
H25A—C25—H25C | 109.5 | C43—C50—C49 | 112.2 (3) |
H25B—C25—H25C | 109.5 | C43—C50—H50A | 109.2 |
N4—C26—C33 | 111.5 (3) | C49—C50—H50A | 109.2 |
N4—C26—C27 | 110.5 (3) | C43—C50—H50B | 109.2 |
C33—C26—C27 | 109.6 (3) | C49—C50—H50B | 109.2 |
N4—C26—H26 | 108.4 | H50A—C50—H50B | 107.9 |
C33—C26—H26 | 108.4 | N5—C51—H51A | 109.5 |
C27—C26—H26 | 108.4 | N5—C51—H51B | 109.5 |
C26—C27—C28 | 112.4 (3) | H51A—C51—H51B | 109.5 |
C26—C27—H27A | 109.1 | N5—C51—H51C | 109.5 |
C28—C27—H27A | 109.1 | H51A—C51—H51C | 109.5 |
C26—C27—H27B | 109.1 | H51B—C51—H51C | 109.5 |
C28—C27—H27B | 109.1 |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2′···O1i | 0.85 (2) | 2.10 (2) | 2.935 (5) | 171 (4) |
N4—H4′···O2ii | 0.86 (2) | 2.05 (2) | 2.894 (5) | 166 (4) |
N6—H6′···O3iii | 0.86 (2) | 2.30 (2) | 3.164 (5) | 174 (4) |
Symmetry codes: (i) x, −y, z+1/2; (ii) x, −y+1, z+1/2; (iii) x, −y+2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C17H24N2O |
Mr | 272.38 |
Crystal system, space group | Monoclinic, Cc |
Temperature (K) | 293 |
a, b, c (Å) | 38.68 (2), 12.300 (7), 9.975 (5) |
β (°) | 101.263 (7) |
V (Å3) | 4654 (4) |
Z | 12 |
Radiation type | Mo Kα |
µ (mm−1) | 0.07 |
Crystal size (mm) | 0.25 × 0.15 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 1999) |
Tmin, Tmax | 0.982, 0.993 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10320, 6399, 4035 |
Rint | 0.049 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.051, 0.151, 0.96 |
No. of reflections | 6399 |
No. of parameters | 556 |
No. of restraints | 5 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.20, −0.23 |
Absolute structure | Flack, H. D. (1983). Acta Cryst. A39, 876–881. |
Absolute structure parameter | −3.4 (17) |
Computer programs: SMART (Bruker, 1999), SAINT (Bruker, 1999), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2'···O1i | 0.846 (19) | 2.10 (2) | 2.935 (5) | 171 (4) |
N4—H4'···O2ii | 0.859 (19) | 2.05 (2) | 2.894 (5) | 166 (4) |
N6—H6'···O3iii | 0.864 (19) | 2.30 (2) | 3.164 (5) | 174 (4) |
Symmetry codes: (i) x, −y, z+1/2; (ii) x, −y+1, z+1/2; (iii) x, −y+2, z−1/2. |
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Motion sickness is common in the population, especially with children. In our laboratory, we have designed and synthesized a novel series of potent 5-HT3 receptor antagonists (Bermudez et al., 1990; Vernekar et al., 2010; Yang et al., 2010). Furthermore, we find that the candidate has the anti-motion sickness effect. Here, we report the crystal structure of the title compound.
As shown in Fig.1, the asymmetric unit of the title compound contains three molecules. H-bonding interactions do play a decisive role in the crystal packing arrangement (Fig. 2). The molecules are linked by weak intermolecular N2—H2···O1, N4—H4···O2 and N6—H6···O3 hydrogen bonds (Table 1) linking the molecules into chains parallel to the c axis.