organic compounds
(5,7-Dimethyl-2-oxo-2H-chromen-4-yl)methyl pyrrolidine-1-carbodithioate
aDepartment of Chemistry, Karnatak Science College, Dharwad 580 001, Karnataka, India, and bDepartment of Physics, Yuvaraja's College (Constituent College), University of Mysore, Mysore 570 005, Karnataka, India
*Correspondence e-mail: devarajegowda@yahoo.com
In the title compound, C17H19NO2S2, the 2H-chromene ring system is almost planar, with a maximum deviation of 0.044 (2) Å, and the pyrrolidine ring adopts an The dihedral angle between the 2H-chromene system and the planar part of the pyrrolidine ring is 83.65 (8)°. A weak intramolecular C—H⋯S hydrogen bond occurs. The features C—H⋯O hydrogen bonds and π–π interactions, with a centroid–centroid distance of 3.5728 (16) Å.
Related literature
For biological properties of et al. (2004); Laurin et al. (1999); Kulkarni et al. (2006). For related structures, see: Kumar et al. (2012); Kant et al. (2012). For synthetic details, see: Shastri et al. (2004); Vasilliev & Polackov (2000).
see: AdaviExperimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2001); cell SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536812018004/wn2472sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812018004/wn2472Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812018004/wn2472Isup3.cml
All the chemicals used were of analytical reagent grade and were used directly without further purification.4-Bromomethyl coumarin required for the synthesis of the target molecule was synthesized according to an already reported procedure involving Pechmann
of with 4-bromoethyl acetoacetate (Shastri et al., 2004) and sodium pyrrolidine-1-carbodithioate was synthesized according to the reported procedure (Vasilliev & Polackov, 2000). A mixture of 2.67 g (0.01 mol) of 5,7-dimethyl-4-bromomethyl coumarin and1.69 g (0.01 mol) of sodium pyrrolidine-1-carbodithioate in 30 ml dry alcohol was stirred for 24 h at room temperature (the reaction was monitored by TLC). The solvent was evaporated and the resulting solid was extracted twice with a dichloromethane-H2O mixture.The organic layer was dried over anhydrous CaCl2 and evaporation of the organic solvent gave the title compound.The compound was recrystallized from an ethanol-chloroform mixture. Colour: colourless. Yield 88%, m.p.443 K.All H atoms were positioned geometrically, with C—H = 0.93 Å for aromatic H, C—H = 0.97 Å for methylene H and C—H = 0.96 Å for methyl H,and refined using a riding model with Uiso(H) = 1.5Ueq(C) for methyl H and Uiso(H) = 1.2Ueq(C) for all other H.
Data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C17H19NO2S2 | F(000) = 704 |
Mr = 333.45 | Dx = 1.383 Mg m−3 |
Monoclinic, P21/c | Melting point: 443 K |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 13.7023 (4) Å | Cell parameters from 2805 reflections |
b = 15.9082 (4) Å | θ = 1.5–25.0° |
c = 7.5511 (2) Å | µ = 0.34 mm−1 |
β = 103.358 (1)° | T = 293 K |
V = 1601.45 (7) Å3 | Plate, colourless |
Z = 4 | 0.24 × 0.20 × 0.12 mm |
Bruker SMART CCD area-detector diffractometer | 2805 independent reflections |
Radiation source: fine-focus sealed tube | 2410 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
ω and ϕ scans | θmax = 25.0°, θmin = 1.5° |
Absorption correction: ψ scan (SADABS; Sheldrick, 2007) | h = −12→16 |
Tmin = 0.770, Tmax = 1.000 | k = −17→18 |
12677 measured reflections | l = −8→8 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.035 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.099 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.052P)2 + 0.452P] where P = (Fo2 + 2Fc2)/3 |
2805 reflections | (Δ/σ)max = 0.001 |
201 parameters | Δρmax = 0.33 e Å−3 |
0 restraints | Δρmin = −0.26 e Å−3 |
C17H19NO2S2 | V = 1601.45 (7) Å3 |
Mr = 333.45 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 13.7023 (4) Å | µ = 0.34 mm−1 |
b = 15.9082 (4) Å | T = 293 K |
c = 7.5511 (2) Å | 0.24 × 0.20 × 0.12 mm |
β = 103.358 (1)° |
Bruker SMART CCD area-detector diffractometer | 2805 independent reflections |
Absorption correction: ψ scan (SADABS; Sheldrick, 2007) | 2410 reflections with I > 2σ(I) |
Tmin = 0.770, Tmax = 1.000 | Rint = 0.024 |
12677 measured reflections |
R[F2 > 2σ(F2)] = 0.035 | 0 restraints |
wR(F2) = 0.099 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.33 e Å−3 |
2805 reflections | Δρmin = −0.26 e Å−3 |
201 parameters |
Experimental. IR (KBr): 686 cm-1 (C—S), 1226.8 cm-1 (C=S), 1000 cm-1 (C—O), 859 cm-1 (C—N),1153 cm-1 (C—O—C), 1719.7 cm-1 (C=O). GCMS: m/e: 333. 1H NMR (400 MHz, DMSO.D6, \?, p.p.m.): 1.91 (m,2H, C11), 2.02 (m,2H, C1), 2.49 (s,3H, C17), 2.74 (s,3H, C10), 3.66 (t,2H, C2), 4.8 (d,2H, C4), 6.5 (s,1H, C14), 7.03 (s,1H, C15), 7.10 (s,1H, C8). Elemental analysis: C, 61.20; H, 5.70; N, 4.16; O, 9.57; S, 19.19. |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.65286 (3) | 0.09638 (3) | 0.11104 (6) | 0.04453 (16) | |
S2 | 0.49960 (4) | 0.17744 (4) | −0.20084 (7) | 0.05921 (19) | |
O3 | 0.92005 (10) | 0.33298 (8) | 0.23621 (19) | 0.0473 (3) | |
O4 | 0.81069 (13) | 0.42553 (9) | 0.0928 (2) | 0.0666 (4) | |
N5 | 0.46456 (11) | 0.11498 (9) | 0.1028 (2) | 0.0407 (4) | |
C6 | 0.35762 (14) | 0.13604 (14) | 0.0441 (3) | 0.0529 (5) | |
H6A | 0.3243 | 0.1002 | −0.0556 | 0.063* | |
H6B | 0.3485 | 0.1943 | 0.0058 | 0.063* | |
C7 | 0.31788 (18) | 0.12064 (18) | 0.2114 (4) | 0.0707 (7) | |
H7A | 0.3155 | 0.1728 | 0.2766 | 0.085* | |
H7B | 0.2508 | 0.0973 | 0.1779 | 0.085* | |
C8 | 0.38742 (17) | 0.06053 (18) | 0.3262 (3) | 0.0705 (7) | |
H8A | 0.3658 | 0.0031 | 0.2966 | 0.085* | |
H8B | 0.3904 | 0.0703 | 0.4541 | 0.085* | |
C9 | 0.48806 (15) | 0.07603 (13) | 0.2847 (3) | 0.0501 (5) | |
H9A | 0.5282 | 0.1135 | 0.3740 | 0.060* | |
H9B | 0.5243 | 0.0237 | 0.2837 | 0.060* | |
C10 | 0.52973 (13) | 0.13150 (11) | 0.0029 (2) | 0.0387 (4) | |
C11 | 0.72925 (14) | 0.13642 (12) | −0.0367 (3) | 0.0451 (4) | |
H11A | 0.7657 | 0.0904 | −0.0757 | 0.054* | |
H11B | 0.6862 | 0.1612 | −0.1443 | 0.054* | |
C12 | 0.80249 (13) | 0.20148 (11) | 0.0595 (2) | 0.0393 (4) | |
C13 | 0.89901 (13) | 0.18216 (11) | 0.1824 (2) | 0.0373 (4) | |
C14 | 0.95351 (13) | 0.25130 (11) | 0.2690 (2) | 0.0391 (4) | |
C15 | 0.83239 (15) | 0.35208 (12) | 0.1143 (3) | 0.0477 (5) | |
C16 | 0.77386 (14) | 0.28199 (12) | 0.0298 (3) | 0.0455 (4) | |
H16 | 0.7126 | 0.2929 | −0.0501 | 0.055* | |
C17 | 0.94441 (14) | 0.10202 (11) | 0.2242 (3) | 0.0424 (4) | |
C18 | 1.03608 (15) | 0.09721 (13) | 0.3483 (3) | 0.0490 (5) | |
H18 | 1.0654 | 0.0446 | 0.3742 | 0.059* | |
C19 | 1.08660 (14) | 0.16670 (13) | 0.4363 (3) | 0.0473 (5) | |
C20 | 1.04425 (14) | 0.24450 (13) | 0.3941 (3) | 0.0459 (4) | |
H20 | 1.0765 | 0.2924 | 0.4495 | 0.055* | |
C21 | 1.18405 (16) | 0.15628 (17) | 0.5764 (3) | 0.0660 (6) | |
H21A | 1.2304 | 0.1991 | 0.5594 | 0.099* | |
H21B | 1.2119 | 0.1019 | 0.5628 | 0.099* | |
H21C | 1.1719 | 0.1611 | 0.6962 | 0.099* | |
C22 | 0.90076 (17) | 0.02021 (13) | 0.1408 (3) | 0.0652 (6) | |
H22A | 0.9452 | −0.0251 | 0.1893 | 0.098* | |
H22B | 0.8926 | 0.0226 | 0.0112 | 0.098* | |
H22C | 0.8367 | 0.0111 | 0.1688 | 0.098* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0365 (3) | 0.0496 (3) | 0.0446 (3) | −0.0019 (2) | 0.00356 (19) | 0.0083 (2) |
S2 | 0.0570 (3) | 0.0720 (4) | 0.0455 (3) | 0.0119 (3) | 0.0052 (2) | 0.0175 (2) |
O3 | 0.0530 (8) | 0.0355 (7) | 0.0542 (8) | −0.0048 (6) | 0.0141 (6) | 0.0003 (6) |
O4 | 0.0780 (11) | 0.0392 (8) | 0.0832 (11) | 0.0045 (7) | 0.0199 (9) | 0.0115 (7) |
N5 | 0.0378 (8) | 0.0393 (8) | 0.0424 (8) | 0.0008 (6) | 0.0040 (6) | 0.0018 (6) |
C6 | 0.0391 (10) | 0.0573 (13) | 0.0595 (12) | 0.0071 (9) | 0.0059 (9) | 0.0022 (10) |
C7 | 0.0510 (13) | 0.0842 (18) | 0.0813 (17) | 0.0068 (12) | 0.0243 (12) | 0.0095 (14) |
C8 | 0.0605 (14) | 0.0930 (18) | 0.0605 (14) | −0.0091 (13) | 0.0189 (11) | 0.0084 (13) |
C9 | 0.0501 (11) | 0.0541 (12) | 0.0444 (11) | −0.0031 (9) | 0.0072 (8) | 0.0071 (9) |
C10 | 0.0410 (10) | 0.0315 (9) | 0.0402 (9) | −0.0008 (7) | 0.0023 (7) | −0.0030 (7) |
C11 | 0.0425 (10) | 0.0512 (12) | 0.0418 (10) | −0.0034 (8) | 0.0104 (8) | −0.0031 (8) |
C12 | 0.0392 (9) | 0.0450 (10) | 0.0366 (9) | −0.0011 (8) | 0.0146 (7) | 0.0016 (7) |
C13 | 0.0358 (9) | 0.0412 (10) | 0.0383 (9) | −0.0022 (7) | 0.0157 (7) | 0.0002 (7) |
C14 | 0.0409 (9) | 0.0394 (10) | 0.0408 (9) | −0.0022 (8) | 0.0172 (7) | 0.0008 (7) |
C15 | 0.0536 (12) | 0.0427 (11) | 0.0507 (11) | 0.0021 (9) | 0.0197 (9) | 0.0071 (8) |
C16 | 0.0443 (10) | 0.0477 (11) | 0.0451 (10) | 0.0020 (9) | 0.0114 (8) | 0.0080 (8) |
C17 | 0.0402 (10) | 0.0392 (10) | 0.0512 (11) | 0.0009 (8) | 0.0177 (8) | 0.0008 (8) |
C18 | 0.0436 (11) | 0.0486 (12) | 0.0573 (12) | 0.0076 (9) | 0.0166 (9) | 0.0074 (9) |
C19 | 0.0354 (10) | 0.0655 (13) | 0.0432 (10) | 0.0005 (9) | 0.0139 (8) | 0.0035 (9) |
C20 | 0.0410 (10) | 0.0539 (12) | 0.0445 (10) | −0.0091 (9) | 0.0135 (8) | −0.0039 (8) |
C21 | 0.0441 (12) | 0.0919 (18) | 0.0591 (14) | 0.0032 (12) | 0.0062 (10) | 0.0067 (12) |
C22 | 0.0555 (13) | 0.0413 (12) | 0.0949 (17) | 0.0030 (10) | 0.0093 (12) | −0.0052 (11) |
S1—C10 | 1.7858 (18) | C11—H11B | 0.9700 |
S1—C11 | 1.8128 (19) | C12—C16 | 1.343 (3) |
S2—C10 | 1.6667 (18) | C12—C13 | 1.462 (2) |
O3—C15 | 1.368 (2) | C13—C14 | 1.403 (2) |
O3—C14 | 1.381 (2) | C13—C17 | 1.422 (2) |
O4—C15 | 1.207 (2) | C14—C20 | 1.381 (3) |
N5—C10 | 1.322 (2) | C15—C16 | 1.434 (3) |
N5—C6 | 1.468 (2) | C16—H16 | 0.9300 |
N5—C9 | 1.473 (2) | C17—C18 | 1.385 (3) |
C6—C7 | 1.507 (3) | C17—C22 | 1.508 (3) |
C6—H6A | 0.9700 | C18—C19 | 1.389 (3) |
C6—H6B | 0.9700 | C18—H18 | 0.9300 |
C7—C8 | 1.481 (3) | C19—C20 | 1.373 (3) |
C7—H7A | 0.9700 | C19—C21 | 1.509 (3) |
C7—H7B | 0.9700 | C20—H20 | 0.9300 |
C8—C9 | 1.503 (3) | C21—H21A | 0.9600 |
C8—H8A | 0.9700 | C21—H21B | 0.9600 |
C8—H8B | 0.9700 | C21—H21C | 0.9600 |
C9—H9A | 0.9700 | C22—H22A | 0.9600 |
C9—H9B | 0.9700 | C22—H22B | 0.9600 |
C11—C12 | 1.506 (3) | C22—H22C | 0.9600 |
C11—H11A | 0.9700 | ||
C10—S1—C11 | 103.15 (9) | C16—C12—C11 | 116.00 (17) |
C15—O3—C14 | 122.22 (14) | C13—C12—C11 | 124.46 (16) |
C10—N5—C6 | 122.74 (15) | C14—C13—C17 | 116.15 (16) |
C10—N5—C9 | 125.80 (15) | C14—C13—C12 | 115.91 (16) |
C6—N5—C9 | 111.45 (15) | C17—C13—C12 | 127.94 (16) |
N5—C6—C7 | 103.79 (17) | C20—C14—O3 | 113.91 (16) |
N5—C6—H6A | 111.0 | C20—C14—C13 | 123.74 (17) |
C7—C6—H6A | 111.0 | O3—C14—C13 | 122.34 (16) |
N5—C6—H6B | 111.0 | O4—C15—O3 | 117.15 (19) |
C7—C6—H6B | 111.0 | O4—C15—C16 | 126.7 (2) |
H6A—C6—H6B | 109.0 | O3—C15—C16 | 116.13 (16) |
C8—C7—C6 | 106.72 (19) | C12—C16—C15 | 123.74 (18) |
C8—C7—H7A | 110.4 | C12—C16—H16 | 118.1 |
C6—C7—H7A | 110.4 | C15—C16—H16 | 118.1 |
C8—C7—H7B | 110.4 | C18—C17—C13 | 118.81 (17) |
C6—C7—H7B | 110.4 | C18—C17—C22 | 116.43 (17) |
H7A—C7—H7B | 108.6 | C13—C17—C22 | 124.75 (17) |
C7—C8—C9 | 105.61 (19) | C17—C18—C19 | 123.60 (18) |
C7—C8—H8A | 110.6 | C17—C18—H18 | 118.2 |
C9—C8—H8A | 110.6 | C19—C18—H18 | 118.2 |
C7—C8—H8B | 110.6 | C20—C19—C18 | 117.98 (17) |
C9—C8—H8B | 110.6 | C20—C19—C21 | 121.32 (19) |
H8A—C8—H8B | 108.7 | C18—C19—C21 | 120.68 (19) |
N5—C9—C8 | 104.47 (16) | C19—C20—C14 | 119.65 (18) |
N5—C9—H9A | 110.9 | C19—C20—H20 | 120.2 |
C8—C9—H9A | 110.9 | C14—C20—H20 | 120.2 |
N5—C9—H9B | 110.9 | C19—C21—H21A | 109.5 |
C8—C9—H9B | 110.9 | C19—C21—H21B | 109.5 |
H9A—C9—H9B | 108.9 | H21A—C21—H21B | 109.5 |
N5—C10—S2 | 123.94 (13) | C19—C21—H21C | 109.5 |
N5—C10—S1 | 111.60 (13) | H21A—C21—H21C | 109.5 |
S2—C10—S1 | 124.45 (11) | H21B—C21—H21C | 109.5 |
C12—C11—S1 | 111.07 (12) | C17—C22—H22A | 109.5 |
C12—C11—H11A | 109.4 | C17—C22—H22B | 109.5 |
S1—C11—H11A | 109.4 | H22A—C22—H22B | 109.5 |
C12—C11—H11B | 109.4 | C17—C22—H22C | 109.5 |
S1—C11—H11B | 109.4 | H22A—C22—H22C | 109.5 |
H11A—C11—H11B | 108.0 | H22B—C22—H22C | 109.5 |
C16—C12—C13 | 119.52 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
C11—H11B···S2 | 0.97 | 2.51 | 3.172 (2) | 126 |
C18—H18···O4i | 0.93 | 2.52 | 3.411 (3) | 161 |
C22—H22C···S1 | 0.96 | 2.81 | 3.564 (2) | 137 |
Symmetry code: (i) −x+2, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C17H19NO2S2 |
Mr | 333.45 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 13.7023 (4), 15.9082 (4), 7.5511 (2) |
β (°) | 103.358 (1) |
V (Å3) | 1601.45 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.34 |
Crystal size (mm) | 0.24 × 0.20 × 0.12 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | ψ scan (SADABS; Sheldrick, 2007) |
Tmin, Tmax | 0.770, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12677, 2805, 2410 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.035, 0.099, 1.07 |
No. of reflections | 2805 |
No. of parameters | 201 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.33, −0.26 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997).
D—H···A | D—H | H···A | D···A | D—H···A |
C11—H11B···S2 | 0.97 | 2.51 | 3.172 (2) | 126 |
C18—H18···O4i | 0.93 | 2.52 | 3.411 (3) | 161 |
C22—H22C···S1 | 0.96 | 2.81 | 3.564 (2) | 137 |
Symmetry code: (i) −x+2, y−1/2, −z+1/2. |
Acknowledgements
The authors acknowledge the Universities Sophisticated Instrumental Centre, Karnatak University, Dharwad, for CCD X-ray facilities, single-crystal X-ray diffractometer, GCMS, IR, CHNS and NMR data. NMM is grateful to Karnatak Science College, Dharwad, for providing laboratory facilities. He is also thankful to P C Jabin Science College, Hubli and UGC for allowing him to do research under FIP.
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Coumarins are a class of naturally occurring lactones. A number of coumarins have been isolated in recent years, mainly from plant sources and extracts of these have been employed as traditional medicines in different areas of the world. Coumarin derivatives with various thio substituents at the C-4 position have revealed potential as antibacterial (Adavi et al., 2004), DNA gyrase studies (Laurin et al., 1999) and anticancer activity (Kularni et al., 2006).
In our present work, we have been able to link a dithiocarbamate group at the C-4 methylene carbon and it was deemed of considerable interest to study the effect of this group on the total solid state conformation of the molecule. The synthesized compound was screened for antimicrobial, antidiabetic, DNA binding and DNA cleavage studies.In continuation of our interest in the crystal structures of coumarin derivatives (Kumar et al., 2012; Kant et al., 2012), we report here the crystal structure of the title compound.
The asymmetric unit of (5,7-dimethyl-2-oxo-2H-chromen-4-yl)methyl pyrrolidine-1-carbodithioate is shown in Fig. 1. The 2H-chromene ring system (O3/C12–C20) is essentially planar, with a maximum deviation of 0.044 (2)Å for atom C15.The pyrrolidine ring adopts an envelope conformation with C8 as the flap atom. The dihedral angle between the 2H-chromene ring system (O3/C12–C20) and the planar part of the pyrrolidine ring (N5, C6, C7, C9) is 83.65 (8)°.
In the crystal structure, (Fig. 2), the molecules are connected via weak intramolecular C11—H11B···S2 and C22—H22C···S1 and intermolecular C—H···O hydrogen bonds (Table 1).Furthermore, the crystal structure features a π-π interaction,with a centroid Cg2 (O3/C12–C16) to centroid Cg3 (C13/C14/C17–C20) distance of 3.5728 (16) Å.