metal-organic compounds
Bis{N2,N6-bis[(pyridin-3-yl)methyl]pyridine-2,6-dicarboxamide-κN}bis(methanol-κO)bis(thiocyanato-κN)cobalt(II)
aDepartment of Environmental and Municipal Engineering, North China University of Water Conservancy and Electric Power, Zhengzhou 450011, People's Republic of China, and bHenan Vocational College of Chemical Technology, Zhengzhou 450052, People's Republic of China
*Correspondence e-mail: yangguangrui@ncwu.edu.cn
In the title compound, [Co(NCS)2(C19H17N5O2)2(CH3OH)2], the CoII atom lies on an inversion center and is coordinated by two isothiocyanate N atoms, two O atoms of methanol molecules and two pyridine N atoms in a slightly distorted octahedral environment. Intermolecular O—H⋯O and N—H⋯N hydrogen bonds join the complex molecules into layers parallel to the bc plane.
Related literature
For the coordination chemistry of pyridylcarboxamides, see: Thompson (2002); Wu et al. (2008). For the architectures of complexes with pyridylcarboxamide ligands and various metal ions, see: Uemura et al. (2002); Burchell et al. (2006).
Experimental
Crystal data
|
Refinement
|
|
Data collection: SMART (Siemens, 1996); cell SAINT (Siemens, 1996); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536812020326/yk2057sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812020326/yk2057Isup2.hkl
Synthesis of BPDA ligand. A mixture of 2,6-pyridinedicarboxylic acid (10 g, 60 mmol) and thionyl chloride (75 ml) was heated with reflux for 6 h under anhydrous condition, and then excess thionyl chloride was removed by rotary evaporation. The resulting white solid pyridine-2,6-dicarboyl dichloride was dissolved in dry CH2Cl2 (50 ml), to which a solution of 3-(aminomethyl)pyridine (13 g, 120 mmol) and triethylamine (24 ml) in dry CH2Cl2 (70 ml) was added dropwise with continuous stirring in an ice-bath. Stirred at room temperature for another hour, the mixture was washed with water (500 ml). The separated organic phase was dried with magnesium sulfate, and the solvent was removed by rotary evaporation. After recrystallization from alcohol/water (2:1), white crystals of BPDA were obtained (Yield: 70%). Selected IR (cm-1, KBr pellet): 3551(m), 3305(s), 3055(m), 2925(m), 1670(vs), 1593(m), 1542(vs), 1478(m), 1425(m), 1313(m), 1258(m), 1175(m), 1076(m), 1000(s), 864(m), 770(s), 679(m), 614(w).
The title compound (1) was prepared according to the following process. A solution of BPDA (69.4 mg, 0.2 mmol) in DMF (5 ml) was dropwise added into a solution of CoSO4.6H2O (28.1 mg, 0.1 mmol) in methanol (5 ml), and then a solution of KSCN (19.4 mg, 0.2 mmol) in methanol (5 ml) was dropwise added into the above mixture. With stirring for 30 minutes, the resulting mixture was filtered. The filtrate was allowed to evaporate at room temperature for two days, and pink crystals were obtain in 48% yield. Selected IR (cm-1, KBr pellet): 3351(m), 2072(vs), 1670(vs), 1534(vs), 1437(m), 1087(m), 750(m), 709(m).
Two very strong reflections, (2 1 1) and (-1 4 1), were omitted because of intensity overflow. All H atoms attached to the C and N atoms were positioned geometrically at distances 0.98 Å (CH3), 0.99 Å (CH2), 0.95 Å (CH) and 0.88 Å (NH) and refined using a riding model with Uiso(H) = 1.2Ueq(C,N) and Uiso(H) = 1.5Ueq(Cmethyl). The positional parameters of the H atom attached to oxygen were refined freely, and at the last stage of the
they were restrained with the H—O = 0.82 (3) Å and with Uiso(H) = 1.2Ueq(O).Data collection: SMART (Siemens, 1996); cell
SAINT (Siemens, 1996); data reduction: SAINT (Siemens, 1996); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).[Co(NCS)2(C19H17N5O2)2(CH4O)2] | F(000) = 970 |
Mr = 933.93 | Dx = 1.417 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 4895 reflections |
a = 9.6728 (19) Å | θ = 2.1–30.8° |
b = 17.631 (4) Å | µ = 0.55 mm−1 |
c = 13.041 (3) Å | T = 293 K |
β = 100.13 (3)° | Block, pink |
V = 2189.4 (8) Å3 | 0.22 × 0.21 × 0.18 mm |
Z = 2 |
Siemens SMART CCD diffractometer | 3803 independent reflections |
Radiation source: fine-focus sealed tube | 3435 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.049 |
ω scan | θmax = 25.0°, θmin = 2.4° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −11→11 |
Tmin = 0.892, Tmax = 0.914 | k = −20→20 |
21676 measured reflections | l = −15→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.054 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.101 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.15 | w = 1/[σ2(Fo2) + (0.0359P)2 + 0.829P] where P = (Fo2 + 2Fc2)/3 |
3803 reflections | (Δ/σ)max < 0.001 |
291 parameters | Δρmax = 0.18 e Å−3 |
0 restraints | Δρmin = −0.18 e Å−3 |
[Co(NCS)2(C19H17N5O2)2(CH4O)2] | V = 2189.4 (8) Å3 |
Mr = 933.93 | Z = 2 |
Monoclinic, P21/c | Mo Kα radiation |
a = 9.6728 (19) Å | µ = 0.55 mm−1 |
b = 17.631 (4) Å | T = 293 K |
c = 13.041 (3) Å | 0.22 × 0.21 × 0.18 mm |
β = 100.13 (3)° |
Siemens SMART CCD diffractometer | 3803 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 3435 reflections with I > 2σ(I) |
Tmin = 0.892, Tmax = 0.914 | Rint = 0.049 |
21676 measured reflections |
R[F2 > 2σ(F2)] = 0.054 | 0 restraints |
wR(F2) = 0.101 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.15 | Δρmax = 0.18 e Å−3 |
3803 reflections | Δρmin = −0.18 e Å−3 |
291 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Co1 | 0.0000 | 0.0000 | 0.5000 | 0.03328 (16) | |
S1 | −0.19041 (9) | 0.20444 (5) | 0.66597 (7) | 0.0607 (3) | |
O1 | 0.3791 (3) | −0.10454 (13) | 0.85021 (19) | 0.0727 (7) | |
O2 | 0.0978 (2) | 0.10649 (12) | 1.22010 (16) | 0.0622 (6) | |
O3 | −0.0365 (2) | 0.08401 (12) | 0.38047 (17) | 0.0472 (5) | |
N1 | 0.2436 (2) | 0.02348 (12) | 1.01554 (16) | 0.0373 (5) | |
N2 | 0.3961 (2) | 0.02276 (14) | 0.86373 (18) | 0.0463 (6) | |
H2A | 0.3683 | 0.0635 | 0.8935 | 0.056* | |
N3 | 0.2057 (2) | 0.16022 (13) | 1.09943 (17) | 0.0443 (6) | |
H3A | 0.2468 | 0.1532 | 1.0451 | 0.053* | |
N4 | 0.2142 (2) | 0.03865 (13) | 0.54496 (17) | 0.0397 (5) | |
N5 | 0.3318 (3) | 0.30281 (16) | 1.4128 (2) | 0.0604 (7) | |
N6 | −0.0655 (3) | 0.07304 (14) | 0.60659 (18) | 0.0458 (6) | |
C1 | 0.3501 (3) | −0.04486 (18) | 0.8894 (2) | 0.0471 (7) | |
C2 | 0.2582 (3) | −0.04329 (16) | 0.9707 (2) | 0.0409 (7) | |
C3 | 0.1951 (3) | −0.10950 (17) | 0.9980 (2) | 0.0533 (8) | |
H3 | 0.2049 | −0.1558 | 0.9628 | 0.064* | |
C4 | 0.1183 (3) | −0.10634 (19) | 1.0772 (3) | 0.0583 (9) | |
H4 | 0.0753 | −0.1508 | 1.0983 | 0.070* | |
C5 | 0.1043 (3) | −0.03805 (18) | 1.1255 (2) | 0.0497 (8) | |
H5 | 0.0521 | −0.0346 | 1.1806 | 0.060* | |
C6 | 0.1676 (3) | 0.02553 (15) | 1.0922 (2) | 0.0386 (7) | |
C7 | 0.1543 (3) | 0.10093 (17) | 1.1426 (2) | 0.0419 (7) | |
C8 | 0.4895 (3) | 0.0323 (2) | 0.7894 (2) | 0.0536 (8) | |
H8A | 0.5457 | −0.0145 | 0.7886 | 0.064* | |
H8B | 0.5554 | 0.0742 | 0.8134 | 0.064* | |
C9 | 0.4171 (3) | 0.04924 (16) | 0.6792 (2) | 0.0405 (7) | |
C10 | 0.2796 (3) | 0.02987 (16) | 0.6441 (2) | 0.0420 (7) | |
H10 | 0.2275 | 0.0090 | 0.6926 | 0.050* | |
C11 | 0.2886 (3) | 0.06854 (17) | 0.4779 (2) | 0.0509 (8) | |
H11 | 0.2453 | 0.0745 | 0.4071 | 0.061* | |
C12 | 0.4252 (4) | 0.0909 (2) | 0.5080 (3) | 0.0633 (9) | |
H12 | 0.4747 | 0.1132 | 0.4588 | 0.076* | |
C13 | 0.4904 (3) | 0.08126 (19) | 0.6091 (3) | 0.0566 (9) | |
H13 | 0.5853 | 0.0965 | 0.6306 | 0.068* | |
C14 | 0.1958 (4) | 0.23665 (17) | 1.1399 (2) | 0.0537 (8) | |
H14A | 0.0988 | 0.2452 | 1.1519 | 0.064* | |
H14B | 0.2145 | 0.2736 | 1.0867 | 0.064* | |
C15 | 0.2965 (3) | 0.25142 (15) | 1.2399 (2) | 0.0419 (7) | |
C16 | 0.4374 (4) | 0.23449 (18) | 1.2524 (3) | 0.0594 (9) | |
H16 | 0.4747 | 0.2111 | 1.1975 | 0.071* | |
C17 | 0.5232 (4) | 0.2516 (2) | 1.3443 (3) | 0.0665 (10) | |
H17 | 0.6207 | 0.2403 | 1.3541 | 0.080* | |
C18 | 0.4669 (4) | 0.28538 (19) | 1.4224 (3) | 0.0620 (9) | |
H18 | 0.5273 | 0.2968 | 1.4861 | 0.074* | |
C19 | 0.2503 (3) | 0.28563 (17) | 1.3221 (2) | 0.0522 (8) | |
H19 | 0.1533 | 0.2980 | 1.3139 | 0.063* | |
C20 | −0.1081 (5) | 0.1531 (2) | 0.3779 (3) | 0.0936 (15) | |
H20A | −0.1899 | 0.1473 | 0.4122 | 0.140* | |
H20B | −0.1394 | 0.1686 | 0.3053 | 0.140* | |
H20C | −0.0453 | 0.1919 | 0.4143 | 0.140* | |
C21 | −0.1174 (3) | 0.12750 (16) | 0.6318 (2) | 0.0387 (6) | |
H1 | 0.005 (3) | 0.0815 (17) | 0.336 (2) | 0.045 (10)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Co1 | 0.0331 (3) | 0.0375 (3) | 0.0294 (3) | 0.0044 (2) | 0.0059 (2) | 0.0039 (2) |
S1 | 0.0654 (6) | 0.0427 (5) | 0.0790 (6) | 0.0000 (4) | 0.0261 (5) | −0.0131 (4) |
O1 | 0.0898 (19) | 0.0547 (14) | 0.0772 (17) | 0.0137 (13) | 0.0244 (14) | −0.0174 (13) |
O2 | 0.0804 (17) | 0.0688 (15) | 0.0449 (13) | 0.0054 (12) | 0.0318 (12) | 0.0063 (11) |
O3 | 0.0517 (13) | 0.0519 (13) | 0.0415 (12) | 0.0129 (10) | 0.0179 (11) | 0.0156 (10) |
N1 | 0.0372 (13) | 0.0400 (13) | 0.0322 (12) | 0.0034 (10) | −0.0006 (10) | −0.0006 (10) |
N2 | 0.0466 (15) | 0.0544 (16) | 0.0378 (13) | 0.0025 (12) | 0.0067 (11) | −0.0090 (11) |
N3 | 0.0574 (16) | 0.0449 (14) | 0.0341 (13) | −0.0024 (12) | 0.0176 (12) | −0.0015 (11) |
N4 | 0.0358 (13) | 0.0479 (14) | 0.0352 (13) | −0.0013 (11) | 0.0063 (10) | 0.0022 (11) |
N5 | 0.0644 (19) | 0.0654 (18) | 0.0547 (17) | −0.0038 (15) | 0.0195 (15) | −0.0203 (14) |
N6 | 0.0497 (15) | 0.0484 (15) | 0.0415 (14) | 0.0059 (12) | 0.0143 (12) | −0.0012 (12) |
C1 | 0.0476 (18) | 0.0490 (19) | 0.0406 (17) | 0.0103 (15) | −0.0035 (14) | −0.0062 (15) |
C2 | 0.0404 (16) | 0.0441 (17) | 0.0344 (15) | 0.0043 (13) | −0.0043 (12) | 0.0014 (13) |
C3 | 0.056 (2) | 0.0406 (18) | 0.057 (2) | 0.0008 (15) | −0.0057 (16) | −0.0021 (15) |
C4 | 0.060 (2) | 0.051 (2) | 0.062 (2) | −0.0100 (16) | 0.0035 (17) | 0.0104 (17) |
C5 | 0.0493 (18) | 0.057 (2) | 0.0419 (17) | −0.0049 (15) | 0.0047 (14) | 0.0100 (15) |
C6 | 0.0362 (15) | 0.0459 (17) | 0.0321 (15) | 0.0021 (13) | 0.0016 (12) | 0.0063 (12) |
C7 | 0.0413 (16) | 0.0553 (19) | 0.0288 (15) | 0.0063 (14) | 0.0057 (13) | 0.0040 (13) |
C8 | 0.0359 (17) | 0.077 (2) | 0.0457 (18) | −0.0008 (16) | 0.0012 (14) | −0.0087 (16) |
C9 | 0.0336 (15) | 0.0451 (16) | 0.0421 (16) | 0.0006 (13) | 0.0049 (13) | −0.0066 (13) |
C10 | 0.0400 (16) | 0.0530 (18) | 0.0337 (15) | −0.0002 (14) | 0.0082 (13) | 0.0005 (13) |
C11 | 0.0484 (18) | 0.062 (2) | 0.0426 (18) | −0.0015 (16) | 0.0094 (15) | 0.0125 (15) |
C12 | 0.057 (2) | 0.080 (2) | 0.058 (2) | −0.0173 (18) | 0.0216 (17) | 0.0120 (18) |
C13 | 0.0409 (18) | 0.068 (2) | 0.061 (2) | −0.0175 (16) | 0.0086 (16) | −0.0059 (17) |
C14 | 0.070 (2) | 0.0449 (18) | 0.0483 (18) | 0.0091 (16) | 0.0159 (16) | −0.0003 (15) |
C15 | 0.0495 (18) | 0.0343 (15) | 0.0444 (17) | 0.0026 (13) | 0.0153 (14) | −0.0027 (13) |
C16 | 0.063 (2) | 0.061 (2) | 0.060 (2) | 0.0124 (17) | 0.0266 (18) | −0.0089 (17) |
C17 | 0.053 (2) | 0.073 (2) | 0.075 (3) | 0.0072 (18) | 0.0156 (19) | −0.009 (2) |
C18 | 0.065 (2) | 0.057 (2) | 0.063 (2) | −0.0105 (18) | 0.0105 (18) | −0.0089 (18) |
C19 | 0.0488 (18) | 0.0533 (19) | 0.059 (2) | 0.0015 (15) | 0.0220 (16) | −0.0111 (16) |
C20 | 0.148 (4) | 0.068 (2) | 0.072 (3) | 0.060 (3) | 0.040 (3) | 0.029 (2) |
C21 | 0.0366 (16) | 0.0423 (16) | 0.0377 (16) | −0.0074 (13) | 0.0080 (12) | −0.0005 (13) |
Co1—N6i | 2.074 (2) | C4—H4 | 0.9500 |
Co1—N6 | 2.074 (2) | C5—C6 | 1.384 (4) |
Co1—O3 | 2.134 (2) | C5—H5 | 0.9500 |
Co1—O3i | 2.134 (2) | C6—C7 | 1.499 (4) |
Co1—N4i | 2.162 (2) | C8—C9 | 1.513 (4) |
Co1—N4 | 2.162 (2) | C8—H8A | 0.9900 |
S1—C21 | 1.627 (3) | C8—H8B | 0.9900 |
O1—C1 | 1.224 (3) | C9—C10 | 1.371 (4) |
O2—C7 | 1.234 (3) | C9—C13 | 1.373 (4) |
O3—C20 | 1.399 (4) | C10—H10 | 0.9500 |
O3—H1 | 0.76 (3) | C11—C12 | 1.369 (4) |
N1—C2 | 1.333 (3) | C11—H11 | 0.9500 |
N1—C6 | 1.341 (3) | C12—C13 | 1.369 (4) |
N2—C1 | 1.336 (4) | C12—H12 | 0.9500 |
N2—C8 | 1.447 (4) | C13—H13 | 0.9500 |
N2—H2A | 0.8800 | C14—C15 | 1.507 (4) |
N3—C7 | 1.325 (3) | C14—H14A | 0.9900 |
N3—C14 | 1.456 (4) | C14—H14B | 0.9900 |
N3—H3A | 0.8800 | C15—C19 | 1.372 (4) |
N4—C11 | 1.334 (3) | C15—C16 | 1.377 (4) |
N4—C10 | 1.344 (3) | C16—C17 | 1.366 (5) |
N5—C18 | 1.327 (4) | C16—H16 | 0.9500 |
N5—C19 | 1.335 (4) | C17—C18 | 1.372 (5) |
N6—C21 | 1.158 (3) | C17—H17 | 0.9500 |
C1—C2 | 1.498 (4) | C18—H18 | 0.9500 |
C2—C3 | 1.393 (4) | C19—H19 | 0.9500 |
C3—C4 | 1.375 (4) | C20—H20A | 0.9800 |
C3—H3 | 0.9500 | C20—H20B | 0.9800 |
C4—C5 | 1.377 (4) | C20—H20C | 0.9800 |
N6i—Co1—N6 | 180.00 (9) | N3—C7—C6 | 116.4 (2) |
N6i—Co1—O3 | 88.41 (9) | N2—C8—C9 | 114.9 (2) |
N6—Co1—O3 | 91.59 (9) | N2—C8—H8A | 108.6 |
N6i—Co1—O3i | 91.59 (9) | C9—C8—H8A | 108.6 |
N6—Co1—O3i | 88.41 (9) | N2—C8—H8B | 108.6 |
O3—Co1—O3i | 180.0 | C9—C8—H8B | 108.6 |
N6i—Co1—N4i | 90.80 (9) | H8A—C8—H8B | 107.5 |
N6—Co1—N4i | 89.20 (9) | C10—C9—C13 | 117.6 (3) |
O3—Co1—N4i | 89.60 (9) | C10—C9—C8 | 121.8 (3) |
O3i—Co1—N4i | 90.40 (9) | C13—C9—C8 | 120.4 (3) |
N6i—Co1—N4 | 89.20 (9) | N4—C10—C9 | 123.9 (3) |
N6—Co1—N4 | 90.80 (9) | N4—C10—H10 | 118.1 |
O3—Co1—N4 | 90.40 (9) | C9—C10—H10 | 118.1 |
O3i—Co1—N4 | 89.60 (9) | N4—C11—C12 | 122.0 (3) |
N4i—Co1—N4 | 180.0 | N4—C11—H11 | 119.0 |
C20—O3—Co1 | 129.8 (2) | C12—C11—H11 | 119.0 |
C20—O3—H1 | 111 (2) | C13—C12—C11 | 119.9 (3) |
Co1—O3—H1 | 118 (2) | C13—C12—H12 | 120.1 |
C2—N1—C6 | 117.7 (2) | C11—C12—H12 | 120.1 |
C1—N2—C8 | 123.2 (3) | C12—C13—C9 | 119.2 (3) |
C1—N2—H2A | 118.4 | C12—C13—H13 | 120.4 |
C8—N2—H2A | 118.4 | C9—C13—H13 | 120.4 |
C7—N3—C14 | 121.5 (2) | N3—C14—C15 | 113.6 (2) |
C7—N3—H3A | 119.2 | N3—C14—H14A | 108.9 |
C14—N3—H3A | 119.2 | C15—C14—H14A | 108.9 |
C11—N4—C10 | 117.3 (2) | N3—C14—H14B | 108.9 |
C11—N4—Co1 | 123.2 (2) | C15—C14—H14B | 108.9 |
C10—N4—Co1 | 119.40 (18) | H14A—C14—H14B | 107.7 |
C18—N5—C19 | 116.7 (3) | C19—C15—C16 | 117.1 (3) |
C21—N6—Co1 | 154.7 (2) | C19—C15—C14 | 120.2 (3) |
O1—C1—N2 | 123.5 (3) | C16—C15—C14 | 122.7 (3) |
O1—C1—C2 | 121.3 (3) | C17—C16—C15 | 119.4 (3) |
N2—C1—C2 | 115.2 (3) | C17—C16—H16 | 120.3 |
N1—C2—C3 | 122.9 (3) | C15—C16—H16 | 120.3 |
N1—C2—C1 | 116.7 (3) | C16—C17—C18 | 119.2 (3) |
C3—C2—C1 | 120.5 (3) | C16—C17—H17 | 120.4 |
C4—C3—C2 | 118.5 (3) | C18—C17—H17 | 120.4 |
C4—C3—H3 | 120.7 | N5—C18—C17 | 122.9 (3) |
C2—C3—H3 | 120.7 | N5—C18—H18 | 118.5 |
C3—C4—C5 | 119.3 (3) | C17—C18—H18 | 118.5 |
C3—C4—H4 | 120.4 | N5—C19—C15 | 124.6 (3) |
C5—C4—H4 | 120.4 | N5—C19—H19 | 117.7 |
C4—C5—C6 | 118.7 (3) | C15—C19—H19 | 117.7 |
C4—C5—H5 | 120.7 | O3—C20—H20A | 109.5 |
C6—C5—H5 | 120.7 | O3—C20—H20B | 109.5 |
N1—C6—C5 | 122.9 (3) | H20A—C20—H20B | 109.5 |
N1—C6—C7 | 116.9 (2) | O3—C20—H20C | 109.5 |
C5—C6—C7 | 120.2 (3) | H20A—C20—H20C | 109.5 |
O2—C7—N3 | 122.6 (3) | H20B—C20—H20C | 109.5 |
O2—C7—C6 | 121.0 (3) | N6—C21—S1 | 179.4 (3) |
N6i—Co1—O3—C20 | 167.7 (3) | C4—C5—C6—C7 | 179.8 (3) |
N6—Co1—O3—C20 | −12.3 (3) | C14—N3—C7—O2 | −1.4 (4) |
N4i—Co1—O3—C20 | 76.9 (3) | C14—N3—C7—C6 | 178.5 (2) |
N4—Co1—O3—C20 | −103.1 (3) | N1—C6—C7—O2 | −173.0 (3) |
N6i—Co1—N4—C11 | 57.5 (2) | C5—C6—C7—O2 | 6.5 (4) |
N6—Co1—N4—C11 | −122.5 (2) | N1—C6—C7—N3 | 7.2 (4) |
O3—Co1—N4—C11 | −30.9 (2) | C5—C6—C7—N3 | −173.4 (3) |
O3i—Co1—N4—C11 | 149.1 (2) | C1—N2—C8—C9 | 94.9 (3) |
N6i—Co1—N4—C10 | −119.7 (2) | N2—C8—C9—C10 | −22.9 (4) |
N6—Co1—N4—C10 | 60.3 (2) | N2—C8—C9—C13 | 160.6 (3) |
O3—Co1—N4—C10 | 151.9 (2) | C11—N4—C10—C9 | −0.5 (4) |
O3i—Co1—N4—C10 | −28.1 (2) | Co1—N4—C10—C9 | 176.9 (2) |
O3—Co1—N6—C21 | 12.0 (5) | C13—C9—C10—N4 | 1.7 (4) |
O3i—Co1—N6—C21 | −168.0 (5) | C8—C9—C10—N4 | −174.9 (3) |
N4i—Co1—N6—C21 | −77.6 (5) | C10—N4—C11—C12 | −1.2 (4) |
N4—Co1—N6—C21 | 102.4 (5) | Co1—N4—C11—C12 | −178.4 (2) |
C8—N2—C1—O1 | −2.3 (4) | N4—C11—C12—C13 | 1.5 (5) |
C8—N2—C1—C2 | 177.9 (2) | C11—C12—C13—C9 | −0.2 (5) |
C6—N1—C2—C3 | 1.8 (4) | C10—C9—C13—C12 | −1.4 (5) |
C6—N1—C2—C1 | −176.7 (2) | C8—C9—C13—C12 | 175.3 (3) |
O1—C1—C2—N1 | 173.9 (3) | C7—N3—C14—C15 | 74.6 (4) |
N2—C1—C2—N1 | −6.3 (4) | N3—C14—C15—C19 | −133.0 (3) |
O1—C1—C2—C3 | −4.7 (4) | N3—C14—C15—C16 | 49.6 (4) |
N2—C1—C2—C3 | 175.0 (3) | C19—C15—C16—C17 | 0.5 (5) |
N1—C2—C3—C4 | −2.2 (4) | C14—C15—C16—C17 | 178.0 (3) |
C1—C2—C3—C4 | 176.3 (3) | C15—C16—C17—C18 | 0.0 (5) |
C2—C3—C4—C5 | 1.0 (5) | C19—N5—C18—C17 | 0.2 (5) |
C3—C4—C5—C6 | 0.4 (5) | C16—C17—C18—N5 | −0.3 (5) |
C2—N1—C6—C5 | −0.3 (4) | C18—N5—C19—C15 | 0.3 (5) |
C2—N1—C6—C7 | 179.1 (2) | C16—C15—C19—N5 | −0.6 (5) |
C4—C5—C6—N1 | −0.8 (4) | C14—C15—C19—N5 | −178.2 (3) |
Symmetry code: (i) −x, −y, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3A···N5ii | 0.88 | 2.18 | 2.980 (3) | 151 |
O3—H1···O2iii | 0.76 (3) | 1.94 (3) | 2.679 (3) | 163 (3) |
Symmetry codes: (ii) x, −y+1/2, z−1/2; (iii) x, y, z−1. |
Experimental details
Crystal data | |
Chemical formula | [Co(NCS)2(C19H17N5O2)2(CH4O)2] |
Mr | 933.93 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 9.6728 (19), 17.631 (4), 13.041 (3) |
β (°) | 100.13 (3) |
V (Å3) | 2189.4 (8) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.55 |
Crystal size (mm) | 0.22 × 0.21 × 0.18 |
Data collection | |
Diffractometer | Siemens SMART CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.892, 0.914 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 21676, 3803, 3435 |
Rint | 0.049 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.054, 0.101, 1.15 |
No. of reflections | 3803 |
No. of parameters | 291 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.18, −0.18 |
Computer programs: SMART (Siemens, 1996), SAINT (Siemens, 1996), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3A···N5i | 0.88 | 2.18 | 2.980 (3) | 151.0 |
O3—H1···O2ii | 0.76 (3) | 1.94 (3) | 2.679 (3) | 163 (3) |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) x, y, z−1. |
Acknowledgements
This work was supported by the Natural Science Foundation of China.
References
Burchell, T. J., Eisler, D. J. & Puddephatt, R. J. (2006). Cryst. Growth Des. 6, 974–982. Web of Science CSD CrossRef CAS Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Siemens (1996). SMART and SAINT. Siemens Analytical X-ray Instruments Inc., Madison, Wisconsin, USA. Google Scholar
Thompson, L. K. (2002). Coord. Chem. Rev. 233, 193–206. Web of Science CrossRef Google Scholar
Uemura, K., Kitagawa, S., Kondo, M., Fukui, K., Kitaura, R., Chang, H. C. & Mizutani, T. (2002). Chem. Eur. J. 8, 3586–3600. CrossRef PubMed CAS Google Scholar
Wu, B., Liu, C., Yuan, D., Jiang, F. & Hong, M. (2008). Cryst. Growth Des. 8, 3791–3802. Web of Science CSD CrossRef CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Pyridylcarboxamides derived from carboxylic acids form a class of spectacularly multidentate heterocyclic ligands and hold an important position in biochemistry and coordination chemistry (Thompson, 2002; Wu et al., 2008). Over the last decades, several research groups worldwide have provided a wide range of structural motifs from isolated macrocycles, helicates to dynamic porous frameworks based on pyridylcarboxamide ligands (Uemura, et al., 2002; Burchell, et al., 2006). In course of such studies, we synthesized the symmetric multifunctional ligand N2,N6-bis((pyridin-3-yl)methyl)pyridine-2,6-dicarboxamide (BPDA) and prepared complexes of BPDA with some metal ions. Here we present the structure of such complex, [Co(BPDA)2(CH4O)2(SCN)2] (1).
The title compound is a mononuclear complex, where the Co2+ ion lies at the inversion center, thus the asymmetric unit consists of Co atom, one BPDA, one methanol molecule, and one SCN- anion (Fig. 1). In (1) the coordination center is ligated by two isothiocyanato N atoms, two methanol O atoms, and two BPDA acting as monodentate ligands through their pyridyl N atoms. The octahedral coordination environment is slightly distorted, the largest deviation of coordination angles from idealized values are 1.59 (9) °.
Further aggregation of complex molecules is formed by the multiple hydrogen-bonding between the dicarboxamide groups of BPDA (as donors) and the uncoordinated pyridyl groups of other BPDA (as acceptors) as well as between the coordination methanol molecules (as donors) and the dicarboxamide groups of BPDA (as acceptors) (Table 2). Consequently, monomers are linked by O—H···O and N—H···N hydrogen bonds into a two-dimensional network parallel to the bc plane (Fig. 2). The layer structure is stabilized by face-to-face π···π stacking interactions between adjacent central pyridine rings of BPDA with a centroid to centroid distance of 3.793 (2) Å. Notably, that the ligand BPDA in (1) have pseudo-C2 symmetry and adopts helical conformation with the dihedral angles of the pendant pyridyl groups with the central pyridine ring of 76.1 (3) and 75.6 (3) °, respectively.