organic compounds
tert-Butyl (2R,4aR,5aR,11aS,12R,12aR)-8-[bis(tert-butoxycarbonyl)amino]-12-hydroxy-2-methoxy-2,10-dioxo-4,4a,5a,6,9,10,11,11a,12,12a-decahydro-2H-1,3,5-trioxa-6,7,9,11-tetraaza-2λ5-phosphatetracene-6-carboxylate methanol monosolvate monohydrate
aCarbohydrate Chemistry Group, Industrial Research Limited, PO Box 31-310, Lower Hutt, New Zealand, bGlycosyn Group, Industrial Research Limited, PO Box 31-310, Lower Hutt, New Zealand, and cAlexion Pharmaceuticals Inc., 352 Knotter Drive, Cheshire, CT 06410, USA
*Correspondence e-mail: g.gainsford@irl.cri.nz
The title compound, C26H40N5O13P·CH3OH·H2O, crystallizes with one water and one methanol molecule providing important crystal-binding interactions. The compound has the unusual feature of having two butoxycarbonyl groups bound to one N atom. The conventional attractive hydrogen bonds involving hydroxy, amine and water donors include bifurcations at both donors and acceptors with novel R12(6) and R21(6) motifs. These are supplemented by C—H⋯O interactions between adjacent molecules forming chain and R22(10) ring motifs.
Related literature
For related structures, see: Low et al. (1995, 1998, 1999). For background information, see: Veldman et al. (2010). For ring puckering parameters, see: Cremer & Pople (1975). For hydrogen-bonding graph-set nomenclature, see: Bernstein et al. (1995).
Experimental
Crystal data
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Data collection: CrysAlis PRO (Oxford Diffraction, 2007); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP in WinGX (Farrugia, 1999) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S160053681202867X/bh2437sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S160053681202867X/bh2437Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S160053681202867X/bh2437Isup3.cml
The details of the synthesis of the title compound will be published elsewhere in due course. The title compound was dissolved in methanol at ambient temperature and diethyl ether added. After 2 h the crystals were filtered off and washed with a little diethyl ether and dried at 15 Torr. The title compound was also crystallized from hot ethanol or hot ethanol and heptane mixtures followed by cooling to ambient temperature but the crystals produced in this way were twinned or were only weakly diffracting.
Seven outlier reflections identified by large delta/sigma ratios (> 4.8) were OMITted from the dataset. All methyl H atoms were constrained to an ideal geometry (C—H = 0.98 Å) with Uiso(H) = 1.5Ueq(C), but were allowed to rotate freely about the adjacent C—C bond. All other C bound H atoms were placed in geometrically idealized positions and constrained to ride on their parent atoms with C—H distances of 1.00 (methine) or 0.99 Å (methylene) and with Uiso(H) = 1.2Ueq(C). hydroxy H atoms on O12 & O15 were constrained to idealized tetrahedral positions with O—H = 0.84 Å, but were allowed to rotate freely about the C—O bond. H atoms on water atom O14 were refined from their difference Fourier map locations, but O—H bond lengths were constrained to 0.84 Å. All hydroxy H atoms were refined with Uiso(H) = 1.5Ueq(O). Finally, N—H bond lengths were fixed to 0.88 Å. A set of 2985 measured Friedel pairs was used to refine the
(Flack, 1983).The title compound is an intermediate required for the synthesis of cyclic pyranopterin monophosphate, a molecule whose absence in humans leads to a rare metabolic disorder known as molybdenum cofactor deficiency type A (Veldman et al., 2010).
The title compound crystallizes with one independent C26H40N5O13P molecule in the
with one water and one methanol molecule of crystallization (Fig. 1). This and related compounds that were prepared are prone to form merohedrally twinned crystals; this non-twinned structure is the only one successfully solved and refined to date. The was determined using the oxygen effect, with the Hooft y parameter value calculated as -0.012 (13) (Spek, 2009). This confirms the expected configurations at C4a (R), C5a (R), C11a (S), C12 (R) and C12a (R).There are only three closely related structures in the Cambridge Structural Database, namely GODXEC (Low et al., 1999), PUVCIS (Low et al., 1998) and ZENSAM (Low et al., 1995) with none of these involving a fourth fused ring as found here (ring 1, atoms C4a, C12a, O1, P2, O3 & C4). A common feature of all the structures is the buckling of the fused rings progressively away from the near planar ring 4 (C6a, N7, C8, N9, C10 & C10a; see Fig. 1). A comparison of the ring parameters, and their conformational forms (Cremer & Pople, 1975) is given in Table 2 (Ring parameters) with rings 2 & 3 consisting of atoms C5a, C11a, C12, C12a, C4a, O5 and N6, C6a, C10a, N11, C11a, C5a respectively. The similarity of the dihedral angles between the planes for ZENSAM (with the same ring absolute configuration) and PUVCIS (with the inverted configuration) implies that addition of the fourth "capping" ring 1 in the stable chair conformation has not required significant conformational changes to the other rings (see Table 3: Angles between ring planes).
The binding of two BOC groups on nitrogen N8 was slightly unexpected, with the second group expected to bind to the ring nitrogen N9. Indeed, a CSD search (Version 5.33, with Feb. 2012 update) indicates that this occurrence has been reported only 19 times whereas structures with BOC single binding are numbered in the multiple 1000's.
The crystal packing consists of a set of conventional N—H···O(water) and O—H···O(methanol, P, water) hydrogen bonds (see Table 1) which include bifurcations at both donors and acceptors with novel R21(6) and R12(6) motifs. These are supplemented by C—H···O interactions between adjacent molecules forming chain and R22(10) ring motifs (Bernstein et al., 1995).
For related structures, see: Low et al. (1995, 1998, 1999). For background information, see: Veldman et al. (2010). For ring puckering parameters, see: Cremer & Pople (1975). For hydrogen-bonding graph-set nomenclature, see: Bernstein et al. (1995).
Data collection: CrysAlis PRO (Oxford Diffraction, 2007); cell
CrysAlis PRO (Oxford Diffraction, 2007); data reduction: CrysAlis PRO (Oxford Diffraction, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP in WinGX (Farrugia, 1999) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. ORTEP (Farrugia, 1999) view of the asymmetric unit atoms with 30% ellipsoid probabilities. H atoms are omitted for clarity. | |
Fig. 2. Mercury (Macrae et al., 2008) cell contents view down the ab diagonal; contact atoms are shown as balls. Some intermolecular binding contacts are shown as purple dotted lines. Symmetry: (i) 1.5 - x,1 - y, z - 0.5 (ii) 1 - x, y - 0.5, 1.5 - z. |
C26H40N5O13P·CH4O·H2O | F(000) = 1512 |
Mr = 711.66 | Dx = 1.315 Mg m−3 |
Orthorhombic, P212121 | Cu Kα radiation, λ = 1.54184 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 8356 reflections |
a = 10.6435 (4) Å | θ = 2.8–73.7° |
b = 15.9508 (13) Å | µ = 1.31 mm−1 |
c = 21.1764 (8) Å | T = 120 K |
V = 3595.2 (3) Å3 | Needle, colourless |
Z = 4 | 0.51 × 0.05 × 0.04 mm |
Oxford Diffraction SuperNova, Dual, Cu at zero, Atlas diffractometer | 6796 independent reflections |
Radiation source: fine-focus sealed tube | 6210 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.040 |
Detector resolution: 10.6501 pixels mm-1 | θmax = 70.0°, θmin = 3.5° |
ω scans | h = −12→12 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2007) | k = −19→19 |
Tmin = 0.853, Tmax = 1.000 | l = −25→25 |
20603 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.038 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.096 | w = 1/[σ2(Fo2) + (0.0524P)2 + 0.416P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max = 0.007 |
6796 reflections | Δρmax = 0.41 e Å−3 |
452 parameters | Δρmin = −0.48 e Å−3 |
2 restraints | Absolute structure: Flack (1983), 2985 Friedel pairs |
0 constraints | Absolute structure parameter: −0.02 (2) |
Primary atom site location: structure-invariant direct methods |
C26H40N5O13P·CH4O·H2O | V = 3595.2 (3) Å3 |
Mr = 711.66 | Z = 4 |
Orthorhombic, P212121 | Cu Kα radiation |
a = 10.6435 (4) Å | µ = 1.31 mm−1 |
b = 15.9508 (13) Å | T = 120 K |
c = 21.1764 (8) Å | 0.51 × 0.05 × 0.04 mm |
Oxford Diffraction SuperNova, Dual, Cu at zero, Atlas diffractometer | 6796 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2007) | 6210 reflections with I > 2σ(I) |
Tmin = 0.853, Tmax = 1.000 | Rint = 0.040 |
20603 measured reflections |
R[F2 > 2σ(F2)] = 0.038 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.096 | Δρmax = 0.41 e Å−3 |
S = 1.04 | Δρmin = −0.48 e Å−3 |
6796 reflections | Absolute structure: Flack (1983), 2985 Friedel pairs |
452 parameters | Absolute structure parameter: −0.02 (2) |
2 restraints |
x | y | z | Uiso*/Ueq | ||
P2 | 0.80446 (5) | 0.58835 (3) | 0.54460 (3) | 0.02445 (12) | |
O1 | 0.78734 (14) | 0.68097 (9) | 0.57026 (7) | 0.0244 (3) | |
O2 | 0.84799 (17) | 0.53670 (10) | 0.60281 (8) | 0.0340 (4) | |
O3 | 0.66670 (15) | 0.55698 (10) | 0.53112 (7) | 0.0270 (3) | |
O4 | 0.22697 (14) | 0.79511 (11) | 0.61522 (7) | 0.0297 (4) | |
O5 | 0.50882 (13) | 0.69304 (9) | 0.57972 (7) | 0.0219 (3) | |
O6 | 0.24587 (13) | 0.79463 (10) | 0.72208 (7) | 0.0246 (3) | |
O7 | 0.21893 (16) | 0.46434 (11) | 0.79895 (8) | 0.0340 (4) | |
O8 | 0.37798 (15) | 0.48589 (10) | 0.72995 (7) | 0.0285 (3) | |
O9 | 0.29577 (16) | 0.52087 (10) | 0.91740 (7) | 0.0307 (3) | |
O10 | 0.77295 (13) | 0.67374 (10) | 0.77704 (7) | 0.0256 (3) | |
O11 | 0.38713 (14) | 0.64782 (10) | 0.89850 (7) | 0.0253 (3) | |
O12 | 0.81909 (13) | 0.84935 (9) | 0.58518 (7) | 0.0239 (3) | |
H12O | 0.8140 | 0.8978 | 0.6006 | 0.036* | |
O13 | 0.89193 (15) | 0.57970 (11) | 0.49161 (8) | 0.0313 (3) | |
N6 | 0.41153 (16) | 0.76019 (11) | 0.66317 (8) | 0.0215 (3) | |
N7 | 0.39592 (15) | 0.66294 (11) | 0.74668 (8) | 0.0200 (3) | |
N8 | 0.38213 (16) | 0.55516 (11) | 0.82093 (8) | 0.0215 (3) | |
N9 | 0.57866 (16) | 0.61801 (11) | 0.79852 (8) | 0.0215 (3) | |
H9N | 0.6101 | 0.5847 | 0.8276 | 0.026* | |
N11 | 0.66929 (16) | 0.76924 (11) | 0.67840 (8) | 0.0227 (4) | |
H11N | 0.7509 | 0.7731 | 0.6845 | 0.027* | |
C4 | 0.5850 (2) | 0.61209 (14) | 0.49446 (10) | 0.0248 (4) | |
H4A | 0.4995 | 0.5879 | 0.4930 | 0.030* | |
H4B | 0.6168 | 0.6155 | 0.4506 | 0.030* | |
C4A | 0.57849 (19) | 0.69937 (14) | 0.52219 (9) | 0.0220 (4) | |
H4AA | 0.5311 | 0.7362 | 0.4923 | 0.026* | |
C5A | 0.48696 (18) | 0.77318 (13) | 0.60754 (9) | 0.0208 (4) | |
H5A | 0.4409 | 0.8099 | 0.5771 | 0.025* | |
C6A | 0.46909 (19) | 0.71540 (13) | 0.71201 (9) | 0.0200 (4) | |
C8 | 0.45310 (18) | 0.61650 (13) | 0.78714 (9) | 0.0194 (4) | |
C10 | 0.65855 (18) | 0.67069 (13) | 0.76551 (9) | 0.0201 (4) | |
C10A | 0.59833 (19) | 0.72028 (13) | 0.71732 (9) | 0.0200 (4) | |
C11A | 0.61092 (18) | 0.81506 (13) | 0.62689 (9) | 0.0199 (4) | |
H11A | 0.5922 | 0.8733 | 0.6417 | 0.024* | |
C12 | 0.69743 (19) | 0.82063 (12) | 0.56888 (9) | 0.0192 (4) | |
H12 | 0.6600 | 0.8625 | 0.5392 | 0.023* | |
C12A | 0.70849 (19) | 0.73790 (13) | 0.53355 (9) | 0.0212 (4) | |
H12A | 0.7496 | 0.7484 | 0.4918 | 0.025* | |
C13 | 0.7751 (4) | 0.5374 (2) | 0.66060 (13) | 0.0540 (8) | |
H13A | 0.7075 | 0.5788 | 0.6570 | 0.081* | |
H13B | 0.8298 | 0.5521 | 0.6962 | 0.081* | |
H13C | 0.7389 | 0.4817 | 0.6677 | 0.081* | |
C14 | 0.28548 (18) | 0.78421 (13) | 0.66324 (10) | 0.0219 (4) | |
C15 | 0.1099 (2) | 0.79637 (19) | 0.73616 (11) | 0.0344 (5) | |
C16 | 0.0540 (3) | 0.8768 (2) | 0.71126 (14) | 0.0550 (9) | |
H16A | 0.1050 | 0.9244 | 0.7253 | 0.082* | |
H16B | −0.0319 | 0.8830 | 0.7273 | 0.082* | |
H16C | 0.0524 | 0.8751 | 0.6650 | 0.082* | |
C17 | 0.1096 (3) | 0.7949 (2) | 0.80794 (12) | 0.0453 (7) | |
H17A | 0.1536 | 0.7447 | 0.8228 | 0.068* | |
H17B | 0.0227 | 0.7941 | 0.8233 | 0.068* | |
H17C | 0.1523 | 0.8450 | 0.8240 | 0.068* | |
C18 | 0.0484 (3) | 0.7190 (2) | 0.70969 (16) | 0.0552 (8) | |
H18A | 0.0465 | 0.7226 | 0.6635 | 0.083* | |
H18B | −0.0376 | 0.7148 | 0.7258 | 0.083* | |
H18C | 0.0963 | 0.6694 | 0.7225 | 0.083* | |
C19 | 0.3147 (2) | 0.49719 (13) | 0.78327 (10) | 0.0244 (4) | |
C20 | 0.3148 (3) | 0.45903 (14) | 0.67033 (11) | 0.0330 (5) | |
C21 | 0.4166 (3) | 0.4769 (2) | 0.62155 (12) | 0.0517 (8) | |
H21A | 0.4359 | 0.5370 | 0.6215 | 0.078* | |
H21B | 0.3868 | 0.4602 | 0.5796 | 0.078* | |
H21C | 0.4925 | 0.4451 | 0.6322 | 0.078* | |
C22 | 0.1987 (3) | 0.51106 (18) | 0.65935 (13) | 0.0475 (7) | |
H22A | 0.1349 | 0.4966 | 0.6909 | 0.071* | |
H22B | 0.1657 | 0.4997 | 0.6170 | 0.071* | |
H22C | 0.2199 | 0.5707 | 0.6630 | 0.071* | |
C23 | 0.2869 (3) | 0.36592 (15) | 0.67444 (12) | 0.0382 (6) | |
H23A | 0.3648 | 0.3352 | 0.6828 | 0.057* | |
H23B | 0.2506 | 0.3467 | 0.6344 | 0.057* | |
H23C | 0.2270 | 0.3557 | 0.7088 | 0.057* | |
C24 | 0.34876 (19) | 0.57038 (13) | 0.88421 (10) | 0.0227 (4) | |
C25 | 0.3793 (2) | 0.68166 (16) | 0.96382 (10) | 0.0301 (5) | |
C26 | 0.2439 (3) | 0.6844 (2) | 0.98517 (12) | 0.0409 (6) | |
H26A | 0.1918 | 0.7084 | 0.9515 | 0.061* | |
H26B | 0.2371 | 0.7193 | 1.0231 | 0.061* | |
H26C | 0.2151 | 0.6275 | 0.9947 | 0.061* | |
C27 | 0.4631 (3) | 0.6298 (2) | 1.00673 (12) | 0.0437 (6) | |
H27A | 0.4300 | 0.5726 | 1.0096 | 0.065* | |
H27B | 0.4650 | 0.6551 | 1.0489 | 0.065* | |
H27C | 0.5484 | 0.6283 | 0.9894 | 0.065* | |
C28 | 0.4294 (3) | 0.77006 (17) | 0.95447 (13) | 0.0410 (6) | |
H28A | 0.5139 | 0.7674 | 0.9362 | 0.061* | |
H28B | 0.4329 | 0.7989 | 0.9953 | 0.061* | |
H28C | 0.3736 | 0.8009 | 0.9259 | 0.061* | |
O14 | 0.6796 (2) | 0.51634 (16) | 0.88814 (11) | 0.0581 (6) | |
H14A | 0.742 (3) | 0.547 (2) | 0.895 (2) | 0.087* | |
H14B | 0.664 (5) | 0.480 (2) | 0.9153 (18) | 0.087* | |
O15 | 0.8836 (3) | 0.6263 (2) | 0.89018 (13) | 0.0791 (9) | |
H15O | 0.8575 | 0.6507 | 0.8576 | 0.119* | |
C29 | 0.9845 (6) | 0.5826 (3) | 0.8763 (3) | 0.0947 (17) | |
H29A | 1.0130 | 0.5523 | 0.9140 | 0.142* | |
H29B | 1.0511 | 0.6205 | 0.8619 | 0.142* | |
H29C | 0.9647 | 0.5424 | 0.8428 | 0.142* |
U11 | U22 | U33 | U12 | U13 | U23 | |
P2 | 0.0273 (3) | 0.0234 (2) | 0.0227 (3) | 0.0025 (2) | 0.0006 (2) | −0.0004 (2) |
O1 | 0.0240 (7) | 0.0249 (7) | 0.0243 (7) | 0.0034 (6) | −0.0025 (5) | −0.0016 (6) |
O2 | 0.0429 (9) | 0.0303 (9) | 0.0288 (8) | 0.0091 (7) | −0.0041 (7) | 0.0011 (7) |
O3 | 0.0305 (8) | 0.0234 (7) | 0.0271 (8) | −0.0025 (6) | 0.0028 (6) | 0.0003 (6) |
O4 | 0.0209 (7) | 0.0494 (10) | 0.0187 (7) | 0.0034 (6) | −0.0031 (6) | 0.0043 (7) |
O5 | 0.0214 (7) | 0.0267 (7) | 0.0177 (7) | −0.0032 (6) | 0.0028 (5) | 0.0018 (6) |
O6 | 0.0173 (7) | 0.0369 (9) | 0.0195 (7) | 0.0043 (6) | 0.0020 (5) | 0.0023 (6) |
O7 | 0.0318 (9) | 0.0413 (9) | 0.0288 (8) | −0.0155 (7) | 0.0027 (6) | −0.0010 (7) |
O8 | 0.0324 (8) | 0.0334 (9) | 0.0197 (7) | −0.0061 (7) | 0.0017 (6) | −0.0031 (6) |
O9 | 0.0401 (9) | 0.0298 (8) | 0.0222 (7) | −0.0066 (7) | 0.0066 (7) | 0.0043 (6) |
O10 | 0.0180 (7) | 0.0355 (8) | 0.0233 (7) | −0.0013 (6) | −0.0010 (5) | 0.0048 (6) |
O11 | 0.0312 (8) | 0.0300 (8) | 0.0147 (7) | −0.0061 (6) | 0.0038 (6) | −0.0010 (6) |
O12 | 0.0206 (7) | 0.0257 (7) | 0.0252 (7) | −0.0036 (6) | 0.0039 (6) | −0.0030 (6) |
O13 | 0.0320 (8) | 0.0292 (8) | 0.0326 (8) | 0.0029 (7) | 0.0046 (7) | −0.0019 (7) |
N6 | 0.0163 (8) | 0.0308 (9) | 0.0175 (8) | 0.0020 (7) | 0.0015 (6) | 0.0044 (7) |
N7 | 0.0171 (8) | 0.0264 (9) | 0.0164 (8) | −0.0012 (7) | 0.0028 (6) | 0.0012 (7) |
N8 | 0.0226 (8) | 0.0232 (8) | 0.0186 (8) | −0.0042 (7) | 0.0025 (6) | 0.0028 (7) |
N9 | 0.0187 (8) | 0.0273 (9) | 0.0184 (8) | 0.0005 (7) | 0.0006 (6) | 0.0048 (7) |
N11 | 0.0180 (8) | 0.0331 (9) | 0.0171 (8) | −0.0026 (7) | 0.0006 (6) | 0.0042 (7) |
C4 | 0.0258 (10) | 0.0300 (11) | 0.0185 (10) | −0.0035 (8) | 0.0003 (8) | −0.0001 (8) |
C4A | 0.0206 (9) | 0.0302 (11) | 0.0153 (9) | −0.0009 (8) | 0.0007 (7) | 0.0017 (8) |
C5A | 0.0196 (9) | 0.0259 (10) | 0.0169 (9) | 0.0015 (8) | 0.0031 (7) | 0.0025 (8) |
C6A | 0.0180 (9) | 0.0271 (10) | 0.0148 (9) | −0.0004 (8) | 0.0016 (7) | −0.0019 (8) |
C8 | 0.0176 (9) | 0.0252 (10) | 0.0154 (9) | −0.0018 (7) | 0.0023 (7) | 0.0005 (8) |
C10 | 0.0167 (9) | 0.0262 (10) | 0.0175 (9) | 0.0011 (7) | 0.0010 (7) | −0.0008 (8) |
C10A | 0.0187 (9) | 0.0257 (10) | 0.0157 (9) | −0.0011 (8) | 0.0011 (7) | −0.0009 (8) |
C11A | 0.0196 (9) | 0.0234 (10) | 0.0165 (9) | −0.0015 (8) | 0.0033 (7) | 0.0012 (7) |
C12 | 0.0183 (9) | 0.0214 (9) | 0.0178 (9) | −0.0019 (8) | 0.0023 (7) | 0.0027 (7) |
C12A | 0.0218 (9) | 0.0254 (10) | 0.0165 (9) | −0.0019 (8) | 0.0035 (7) | 0.0026 (7) |
C13 | 0.085 (2) | 0.0464 (16) | 0.0303 (14) | 0.0231 (16) | 0.0068 (14) | 0.0051 (12) |
C14 | 0.0151 (9) | 0.0291 (10) | 0.0215 (10) | 0.0003 (8) | 0.0025 (7) | 0.0038 (8) |
C15 | 0.0171 (10) | 0.0594 (16) | 0.0267 (11) | 0.0071 (10) | 0.0072 (8) | 0.0037 (11) |
C16 | 0.0445 (16) | 0.085 (2) | 0.0358 (15) | 0.0371 (16) | 0.0060 (12) | 0.0046 (15) |
C17 | 0.0351 (14) | 0.0730 (19) | 0.0277 (12) | 0.0121 (13) | 0.0130 (10) | 0.0063 (13) |
C18 | 0.0316 (14) | 0.083 (2) | 0.0508 (17) | −0.0212 (14) | 0.0124 (12) | −0.0025 (16) |
C19 | 0.0277 (10) | 0.0263 (10) | 0.0193 (10) | −0.0035 (9) | −0.0012 (8) | 0.0038 (8) |
C20 | 0.0506 (14) | 0.0306 (11) | 0.0178 (10) | −0.0100 (11) | −0.0032 (10) | −0.0012 (9) |
C21 | 0.082 (2) | 0.0490 (16) | 0.0245 (13) | −0.0280 (16) | 0.0135 (13) | −0.0056 (11) |
C22 | 0.0617 (17) | 0.0460 (15) | 0.0350 (14) | 0.0003 (14) | −0.0203 (13) | 0.0022 (11) |
C23 | 0.0573 (16) | 0.0320 (12) | 0.0255 (11) | −0.0112 (11) | 0.0005 (11) | −0.0010 (10) |
C24 | 0.0211 (9) | 0.0281 (11) | 0.0190 (10) | −0.0004 (8) | 0.0007 (7) | 0.0019 (8) |
C25 | 0.0361 (12) | 0.0379 (13) | 0.0162 (10) | −0.0013 (10) | 0.0030 (8) | −0.0055 (9) |
C26 | 0.0391 (14) | 0.0532 (17) | 0.0304 (13) | −0.0011 (11) | 0.0105 (10) | −0.0082 (11) |
C27 | 0.0549 (16) | 0.0520 (16) | 0.0240 (12) | 0.0032 (13) | −0.0065 (11) | −0.0012 (11) |
C28 | 0.0504 (15) | 0.0407 (14) | 0.0318 (13) | −0.0084 (11) | 0.0015 (11) | −0.0098 (11) |
O14 | 0.0417 (11) | 0.0749 (16) | 0.0576 (13) | −0.0065 (10) | −0.0128 (10) | 0.0422 (12) |
O15 | 0.0619 (15) | 0.116 (2) | 0.0595 (15) | −0.0051 (16) | −0.0190 (13) | 0.0278 (16) |
C29 | 0.131 (4) | 0.049 (2) | 0.104 (4) | 0.011 (3) | 0.042 (3) | 0.019 (2) |
P2—O13 | 1.4647 (17) | C12A—H12A | 1.0000 |
P2—O2 | 1.5533 (17) | C13—H13A | 0.9800 |
P2—O3 | 1.5755 (16) | C13—H13B | 0.9800 |
P2—O1 | 1.5845 (16) | C13—H13C | 0.9800 |
O1—C12A | 1.461 (2) | C15—C18 | 1.505 (4) |
O2—C13 | 1.449 (3) | C15—C16 | 1.509 (4) |
O3—C4 | 1.460 (3) | C15—C17 | 1.520 (3) |
O4—C14 | 1.205 (3) | C16—H16A | 0.9800 |
O5—C5A | 1.427 (3) | C16—H16B | 0.9800 |
O5—C4A | 1.430 (2) | C16—H16C | 0.9800 |
O6—C14 | 1.326 (3) | C17—H17A | 0.9800 |
O6—C15 | 1.478 (3) | C17—H17B | 0.9800 |
O7—C19 | 1.193 (3) | C17—H17C | 0.9800 |
O8—C19 | 1.327 (3) | C18—H18A | 0.9800 |
O8—C20 | 1.493 (3) | C18—H18B | 0.9800 |
O9—C24 | 1.198 (3) | C18—H18C | 0.9800 |
O10—C10 | 1.243 (3) | C20—C22 | 1.507 (4) |
O11—C24 | 1.336 (3) | C20—C23 | 1.517 (3) |
O11—C25 | 1.487 (3) | C20—C21 | 1.523 (4) |
O12—C12 | 1.416 (3) | C21—H21A | 0.9800 |
O12—H12O | 0.8400 | C21—H21B | 0.9800 |
N6—C14 | 1.395 (3) | C21—H21C | 0.9800 |
N6—C6A | 1.398 (3) | C22—H22A | 0.9800 |
N6—C5A | 1.441 (3) | C22—H22B | 0.9800 |
N7—C8 | 1.286 (3) | C22—H22C | 0.9800 |
N7—C6A | 1.359 (3) | C23—H23A | 0.9800 |
N8—C24 | 1.407 (3) | C23—H23B | 0.9800 |
N8—C19 | 1.416 (3) | C23—H23C | 0.9800 |
N8—C8 | 1.428 (3) | C25—C26 | 1.511 (3) |
N9—C8 | 1.358 (3) | C25—C27 | 1.518 (4) |
N9—C10 | 1.385 (3) | C25—C28 | 1.520 (4) |
N9—H9N | 0.8800 | C26—H26A | 0.9800 |
N11—C10A | 1.364 (3) | C26—H26B | 0.9800 |
N11—C11A | 1.453 (3) | C26—H26C | 0.9800 |
N11—H11N | 0.8800 | C27—H27A | 0.9800 |
C4—C4A | 1.513 (3) | C27—H27B | 0.9800 |
C4—H4A | 0.9900 | C27—H27C | 0.9800 |
C4—H4B | 0.9900 | C28—H28A | 0.9800 |
C4A—C12A | 1.533 (3) | C28—H28B | 0.9800 |
C4A—H4AA | 1.0000 | C28—H28C | 0.9800 |
C5A—C11A | 1.535 (3) | O14—H14A | 0.83 (2) |
C5A—H5A | 1.0000 | O14—H14B | 0.829 (19) |
C6A—C10A | 1.382 (3) | O15—C29 | 1.313 (6) |
C10—C10A | 1.442 (3) | O15—H15O | 0.8400 |
C11A—C12 | 1.538 (2) | C29—H29A | 0.9800 |
C11A—H11A | 1.0000 | C29—H29B | 0.9800 |
C12—C12A | 1.522 (3) | C29—H29C | 0.9800 |
C12—H12 | 1.0000 | ||
O13—P2—O2 | 111.63 (10) | O6—C15—C16 | 109.4 (2) |
O13—P2—O3 | 115.00 (9) | C18—C15—C16 | 113.2 (3) |
O2—P2—O3 | 104.65 (9) | O6—C15—C17 | 101.75 (18) |
O13—P2—O1 | 115.07 (9) | C18—C15—C17 | 111.1 (3) |
O2—P2—O1 | 104.88 (9) | C16—C15—C17 | 111.2 (2) |
O3—P2—O1 | 104.55 (9) | C15—C16—H16A | 109.5 |
C12A—O1—P2 | 117.60 (13) | C15—C16—H16B | 109.5 |
C13—O2—P2 | 120.45 (17) | H16A—C16—H16B | 109.5 |
C4—O3—P2 | 117.34 (13) | C15—C16—H16C | 109.5 |
C5A—O5—C4A | 111.91 (15) | H16A—C16—H16C | 109.5 |
C14—O6—C15 | 120.22 (16) | H16B—C16—H16C | 109.5 |
C19—O8—C20 | 122.02 (18) | C15—C17—H17A | 109.5 |
C24—O11—C25 | 121.94 (17) | C15—C17—H17B | 109.5 |
C12—O12—H12O | 109.5 | H17A—C17—H17B | 109.5 |
C14—N6—C6A | 124.11 (17) | C15—C17—H17C | 109.5 |
C14—N6—C5A | 119.81 (17) | H17A—C17—H17C | 109.5 |
C6A—N6—C5A | 115.74 (16) | H17B—C17—H17C | 109.5 |
C8—N7—C6A | 116.33 (17) | C15—C18—H18A | 109.5 |
C24—N8—C19 | 121.39 (17) | C15—C18—H18B | 109.5 |
C24—N8—C8 | 119.50 (17) | H18A—C18—H18B | 109.5 |
C19—N8—C8 | 115.65 (16) | C15—C18—H18C | 109.5 |
C8—N9—C10 | 121.68 (18) | H18A—C18—H18C | 109.5 |
C8—N9—H9N | 119.2 | H18B—C18—H18C | 109.5 |
C10—N9—H9N | 119.2 | O7—C19—O8 | 127.6 (2) |
C10A—N11—C11A | 120.34 (16) | O7—C19—N8 | 124.2 (2) |
C10A—N11—H11N | 119.8 | O8—C19—N8 | 108.11 (17) |
C11A—N11—H11N | 119.8 | O8—C20—C22 | 110.0 (2) |
O3—C4—C4A | 112.04 (16) | O8—C20—C23 | 108.70 (19) |
O3—C4—H4A | 109.2 | C22—C20—C23 | 112.8 (2) |
C4A—C4—H4A | 109.2 | O8—C20—C21 | 101.5 (2) |
O3—C4—H4B | 109.2 | C22—C20—C21 | 112.0 (2) |
C4A—C4—H4B | 109.2 | C23—C20—C21 | 111.2 (2) |
H4A—C4—H4B | 107.9 | C20—C21—H21A | 109.5 |
O5—C4A—C4 | 106.84 (17) | C20—C21—H21B | 109.5 |
O5—C4A—C12A | 111.27 (16) | H21A—C21—H21B | 109.5 |
C4—C4A—C12A | 112.84 (17) | C20—C21—H21C | 109.5 |
O5—C4A—H4AA | 108.6 | H21A—C21—H21C | 109.5 |
C4—C4A—H4AA | 108.6 | H21B—C21—H21C | 109.5 |
C12A—C4A—H4AA | 108.6 | C20—C22—H22A | 109.5 |
O5—C5A—N6 | 107.44 (16) | C20—C22—H22B | 109.5 |
O5—C5A—C11A | 111.11 (16) | H22A—C22—H22B | 109.5 |
N6—C5A—C11A | 108.87 (16) | C20—C22—H22C | 109.5 |
O5—C5A—H5A | 109.8 | H22A—C22—H22C | 109.5 |
N6—C5A—H5A | 109.8 | H22B—C22—H22C | 109.5 |
C11A—C5A—H5A | 109.8 | C20—C23—H23A | 109.5 |
N7—C6A—C10A | 124.14 (19) | C20—C23—H23B | 109.5 |
N7—C6A—N6 | 117.59 (18) | H23A—C23—H23B | 109.5 |
C10A—C6A—N6 | 117.86 (18) | C20—C23—H23C | 109.5 |
N7—C8—N9 | 125.02 (19) | H23A—C23—H23C | 109.5 |
N7—C8—N8 | 118.57 (18) | H23B—C23—H23C | 109.5 |
N9—C8—N8 | 116.33 (18) | O9—C24—O11 | 128.4 (2) |
O10—C10—N9 | 121.75 (19) | O9—C24—N8 | 124.3 (2) |
O10—C10—C10A | 123.58 (19) | O11—C24—N8 | 107.33 (17) |
N9—C10—C10A | 114.67 (17) | O11—C25—C26 | 110.04 (19) |
N11—C10A—C6A | 122.29 (19) | O11—C25—C27 | 109.03 (19) |
N11—C10A—C10 | 119.73 (18) | C26—C25—C27 | 113.4 (2) |
C6A—C10A—C10 | 117.98 (19) | O11—C25—C28 | 101.29 (18) |
N11—C11A—C5A | 110.44 (16) | C26—C25—C28 | 110.3 (2) |
N11—C11A—C12 | 111.89 (16) | C27—C25—C28 | 112.1 (2) |
C5A—C11A—C12 | 109.07 (16) | C25—C26—H26A | 109.5 |
N11—C11A—H11A | 108.5 | C25—C26—H26B | 109.5 |
C5A—C11A—H11A | 108.5 | H26A—C26—H26B | 109.5 |
C12—C11A—H11A | 108.5 | C25—C26—H26C | 109.5 |
O12—C12—C12A | 109.25 (16) | H26A—C26—H26C | 109.5 |
O12—C12—C11A | 111.80 (16) | H26B—C26—H26C | 109.5 |
C12A—C12—C11A | 112.89 (16) | C25—C27—H27A | 109.5 |
O12—C12—H12 | 107.6 | C25—C27—H27B | 109.5 |
C12A—C12—H12 | 107.6 | H27A—C27—H27B | 109.5 |
C11A—C12—H12 | 107.6 | C25—C27—H27C | 109.5 |
O1—C12A—C12 | 108.78 (15) | H27A—C27—H27C | 109.5 |
O1—C12A—C4A | 110.67 (16) | H27B—C27—H27C | 109.5 |
C12—C12A—C4A | 110.79 (17) | C25—C28—H28A | 109.5 |
O1—C12A—H12A | 108.9 | C25—C28—H28B | 109.5 |
C12—C12A—H12A | 108.9 | H28A—C28—H28B | 109.5 |
C4A—C12A—H12A | 108.9 | C25—C28—H28C | 109.5 |
O2—C13—H13A | 109.5 | H28A—C28—H28C | 109.5 |
O2—C13—H13B | 109.5 | H28B—C28—H28C | 109.5 |
H13A—C13—H13B | 109.5 | H14A—O14—H14B | 117 (5) |
O2—C13—H13C | 109.5 | C29—O15—H15O | 109.5 |
H13A—C13—H13C | 109.5 | O15—C29—H29A | 109.5 |
H13B—C13—H13C | 109.5 | O15—C29—H29B | 109.5 |
O4—C14—O6 | 127.63 (18) | H29A—C29—H29B | 109.5 |
O4—C14—N6 | 122.40 (19) | O15—C29—H29C | 109.5 |
O6—C14—N6 | 109.94 (17) | H29A—C29—H29C | 109.5 |
O6—C15—C18 | 109.6 (2) | H29B—C29—H29C | 109.5 |
O13—P2—O1—C12A | 77.02 (16) | C10A—N11—C11A—C12 | −145.40 (18) |
O2—P2—O1—C12A | −159.94 (14) | O5—C5A—C11A—N11 | −67.4 (2) |
O3—P2—O1—C12A | −50.11 (15) | N6—C5A—C11A—N11 | 50.7 (2) |
O13—P2—O2—C13 | 179.4 (2) | O5—C5A—C11A—C12 | 56.0 (2) |
O3—P2—O2—C13 | −55.6 (2) | N6—C5A—C11A—C12 | 174.10 (16) |
O1—P2—O2—C13 | 54.1 (2) | N11—C11A—C12—O12 | −50.3 (2) |
O13—P2—O3—C4 | −78.07 (16) | C5A—C11A—C12—O12 | −172.83 (16) |
O2—P2—O3—C4 | 159.09 (14) | N11—C11A—C12—C12A | 73.3 (2) |
O1—P2—O3—C4 | 49.09 (16) | C5A—C11A—C12—C12A | −49.2 (2) |
P2—O3—C4—C4A | −53.3 (2) | P2—O1—C12A—C12 | 175.96 (12) |
C5A—O5—C4A—C4 | −174.89 (16) | P2—O1—C12A—C4A | 54.02 (19) |
C5A—O5—C4A—C12A | 61.5 (2) | O12—C12—C12A—O1 | 51.19 (19) |
O3—C4—C4A—O5 | −70.5 (2) | C11A—C12—C12A—O1 | −73.9 (2) |
O3—C4—C4A—C12A | 52.1 (2) | O12—C12—C12A—C4A | 173.05 (15) |
C4A—O5—C5A—N6 | 177.32 (15) | C11A—C12—C12A—C4A | 48.0 (2) |
C4A—O5—C5A—C11A | −63.7 (2) | O5—C4A—C12A—O1 | 67.9 (2) |
C14—N6—C5A—O5 | −107.9 (2) | C4—C4A—C12A—O1 | −52.1 (2) |
C6A—N6—C5A—O5 | 65.7 (2) | O5—C4A—C12A—C12 | −52.8 (2) |
C14—N6—C5A—C11A | 131.70 (19) | C4—C4A—C12A—C12 | −172.90 (16) |
C6A—N6—C5A—C11A | −54.7 (2) | C15—O6—C14—O4 | 19.3 (4) |
C8—N7—C6A—C10A | 0.9 (3) | C15—O6—C14—N6 | −162.6 (2) |
C8—N7—C6A—N6 | 173.44 (18) | C6A—N6—C14—O4 | −153.2 (2) |
C14—N6—C6A—N7 | 28.9 (3) | C5A—N6—C14—O4 | 19.8 (3) |
C5A—N6—C6A—N7 | −144.36 (18) | C6A—N6—C14—O6 | 28.6 (3) |
C14—N6—C6A—C10A | −158.1 (2) | C5A—N6—C14—O6 | −158.35 (18) |
C5A—N6—C6A—C10A | 28.6 (3) | C14—O6—C15—C18 | 53.6 (3) |
C6A—N7—C8—N9 | 1.9 (3) | C14—O6—C15—C16 | −71.1 (3) |
C6A—N7—C8—N8 | −174.69 (17) | C14—O6—C15—C17 | 171.2 (2) |
C10—N9—C8—N7 | −1.1 (3) | C20—O8—C19—O7 | 26.9 (3) |
C10—N9—C8—N8 | 175.53 (18) | C20—O8—C19—N8 | −154.39 (18) |
C24—N8—C8—N7 | −103.6 (2) | C24—N8—C19—O7 | 8.5 (3) |
C19—N8—C8—N7 | 55.7 (3) | C8—N8—C19—O7 | −150.5 (2) |
C24—N8—C8—N9 | 79.5 (2) | C24—N8—C19—O8 | −170.32 (18) |
C19—N8—C8—N9 | −121.1 (2) | C8—N8—C19—O8 | 30.8 (2) |
C8—N9—C10—O10 | 178.0 (2) | C19—O8—C20—C22 | 47.2 (3) |
C8—N9—C10—C10A | −2.3 (3) | C19—O8—C20—C23 | −76.6 (3) |
C11A—N11—C10A—C6A | −3.5 (3) | C19—O8—C20—C21 | 166.0 (2) |
C11A—N11—C10A—C10 | 175.77 (18) | C25—O11—C24—O9 | 6.4 (3) |
N7—C6A—C10A—N11 | 175.01 (19) | C25—O11—C24—N8 | −173.45 (17) |
N6—C6A—C10A—N11 | 2.5 (3) | C19—N8—C24—O9 | 26.3 (3) |
N7—C6A—C10A—C10 | −4.3 (3) | C8—N8—C24—O9 | −175.6 (2) |
N6—C6A—C10A—C10 | −176.77 (18) | C19—N8—C24—O11 | −153.78 (18) |
O10—C10—C10A—N11 | 5.0 (3) | C8—N8—C24—O11 | 4.4 (2) |
N9—C10—C10A—N11 | −174.64 (18) | C24—O11—C25—C26 | −61.7 (3) |
O10—C10—C10A—C6A | −175.7 (2) | C24—O11—C25—C27 | 63.3 (3) |
N9—C10—C10A—C6A | 4.7 (3) | C24—O11—C25—C28 | −178.3 (2) |
C10A—N11—C11A—C5A | −23.7 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N9—H9N···O14 | 0.88 | 1.84 | 2.718 (3) | 179 |
O12—H12O···O7i | 0.84 | 2.40 | 3.090 (2) | 139 |
O12—H12O···O9i | 0.84 | 2.32 | 2.997 (2) | 138 |
O14—H14A···O15 | 0.84 (3) | 1.97 (3) | 2.792 (4) | 167 (4) |
O14—H14B···O13ii | 0.83 (4) | 1.97 (4) | 2.780 (3) | 165 (4) |
O15—H15O···O10 | 0.84 | 1.96 | 2.775 (3) | 162 |
C4—H4B···O4iii | 0.99 | 2.31 | 3.142 (3) | 141 |
C5A—H5A···O13iv | 1.00 | 2.34 | 3.307 (3) | 162 |
C12A—H12A···O4iii | 1.00 | 2.38 | 3.200 (2) | 138 |
C16—H16B···O7v | 0.98 | 2.44 | 3.230 (4) | 137 |
C18—H18B···O10vi | 0.98 | 2.38 | 3.339 (4) | 166 |
Symmetry codes: (i) −x+1, y+1/2, −z+3/2; (ii) −x+3/2, −y+1, z+1/2; (iii) x+1/2, −y+3/2, −z+1; (iv) x−1/2, −y+3/2, −z+1; (v) −x, y+1/2, −z+3/2; (vi) x−1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C26H40N5O13P·CH4O·H2O |
Mr | 711.66 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 120 |
a, b, c (Å) | 10.6435 (4), 15.9508 (13), 21.1764 (8) |
V (Å3) | 3595.2 (3) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 1.31 |
Crystal size (mm) | 0.51 × 0.05 × 0.04 |
Data collection | |
Diffractometer | Oxford Diffraction SuperNova, Dual, Cu at zero, Atlas |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2007) |
Tmin, Tmax | 0.853, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 20603, 6796, 6210 |
Rint | 0.040 |
(sin θ/λ)max (Å−1) | 0.609 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.038, 0.096, 1.04 |
No. of reflections | 6796 |
No. of parameters | 452 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.41, −0.48 |
Absolute structure | Flack (1983), 2985 Friedel pairs |
Absolute structure parameter | −0.02 (2) |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2007), SHELXS97 (Sheldrick, 2008), ORTEP in WinGX (Farrugia, 1999) and Mercury (Macrae et al., 2008), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N9—H9N···O14 | 0.88 | 1.84 | 2.718 (3) | 179 |
O12—H12O···O7i | 0.84 | 2.40 | 3.090 (2) | 139 |
O12—H12O···O9i | 0.84 | 2.32 | 2.997 (2) | 138 |
O14—H14A···O15 | 0.84 (3) | 1.97 (3) | 2.792 (4) | 167 (4) |
O14—H14B···O13ii | 0.83 (4) | 1.97 (4) | 2.780 (3) | 165 (4) |
O15—H15O···O10 | 0.84 | 1.96 | 2.775 (3) | 162 |
C4—H4B···O4iii | 0.99 | 2.31 | 3.142 (3) | 141 |
C5A—H5A···O13iv | 1.00 | 2.34 | 3.307 (3) | 162 |
C12A—H12A···O4iii | 1.00 | 2.38 | 3.200 (2) | 138 |
C16—H16B···O7v | 0.98 | 2.44 | 3.230 (4) | 137 |
C18—H18B···O10vi | 0.98 | 2.38 | 3.339 (4) | 166 |
Symmetry codes: (i) −x+1, y+1/2, −z+3/2; (ii) −x+3/2, −y+1, z+1/2; (iii) x+1/2, −y+3/2, −z+1; (iv) x−1/2, −y+3/2, −z+1; (v) −x, y+1/2, −z+3/2; (vi) x−1, y, z. |
Ring No.b | Source | Q | θ | φ | Conformation |
1 | here | 0.518 (2) | 0.0 (2) | 120 (11) | Chair |
2 | here | 0.554 (2) | 173.2 (2) | 159.7 (18) | Chair |
2 | PUVCIS | 0.505 (3) | 173.9 (3) | 237 (3) | Chair |
2 | ZENSAM | 0.504 (5) | 173.5 (6) | 174 (5) | Chair |
2 | GODXEC | 0.755 (3) | 89.8 (2) | 359.6 (3) | Boat |
3 | here | 0.460 (2) | 56.7 (2) | 59.1 (3) | Envelope |
3 | PUVCIS | 0.478 (3) | 54.7 (4) | 55.7 (4) | Envelope |
3 | ZENSAM | 0.481 (4) | 54.4 (5) | 256.6 (6) | Envelope |
3 | GODXEC | 0.538 (3) | 86.9 (3) | 0.5 (4) | Boat |
4 | here | na | na | na | (Planar) |
4 | PUVCIS | 0.090 (3) | 70.9 (19) | 149.6 (19) | Flat-Screw-boat |
4 | ZENSAM | 0.093 (5) | 103 (3) | 324 (3) | Flat-Twist-boat |
a. For puckering parameters, see: Cremer & Pople (1975). b. Ring definitions given in text |
Source | Planes 1,2 | Planes 2,3 | Planes 1,3 |
here | 63.83 (9) | 13.74 (10) | 72.85 (10) |
PUVCIS | 70.52 (13) | 16.62 (13) | 85.44 (13) |
ZENSAM | 70.3 (2) | 17.0 (2) | 85.7 (2) |
GODXEC | 47.72 (17) | 29.33 (15) | 76.55 (17) |
a. Ring definitions given in text |
Acknowledgements
We thank Dr C. Fitchett of the University of Canterbury, New Zealand, for the data collection.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title compound is an intermediate required for the synthesis of cyclic pyranopterin monophosphate, a molecule whose absence in humans leads to a rare metabolic disorder known as molybdenum cofactor deficiency type A (Veldman et al., 2010).
The title compound crystallizes with one independent C26H40N5O13P molecule in the asymmetric unit with one water and one methanol molecule of crystallization (Fig. 1). This and related compounds that were prepared are prone to form merohedrally twinned crystals; this non-twinned structure is the only one successfully solved and refined to date. The absolute configuration was determined using the oxygen anomalous dispersion effect, with the Hooft y parameter value calculated as -0.012 (13) (Spek, 2009). This confirms the expected configurations at C4a (R), C5a (R), C11a (S), C12 (R) and C12a (R).
There are only three closely related structures in the Cambridge Structural Database, namely GODXEC (Low et al., 1999), PUVCIS (Low et al., 1998) and ZENSAM (Low et al., 1995) with none of these involving a fourth fused ring as found here (ring 1, atoms C4a, C12a, O1, P2, O3 & C4). A common feature of all the structures is the buckling of the fused rings progressively away from the near planar ring 4 (C6a, N7, C8, N9, C10 & C10a; see Fig. 1). A comparison of the ring parameters, and their conformational forms (Cremer & Pople, 1975) is given in Table 2 (Ring parameters) with rings 2 & 3 consisting of atoms C5a, C11a, C12, C12a, C4a, O5 and N6, C6a, C10a, N11, C11a, C5a respectively. The similarity of the dihedral angles between the planes for ZENSAM (with the same ring absolute configuration) and PUVCIS (with the inverted configuration) implies that addition of the fourth "capping" ring 1 in the stable chair conformation has not required significant conformational changes to the other rings (see Table 3: Angles between ring planes).
The binding of two BOC groups on nitrogen N8 was slightly unexpected, with the second group expected to bind to the ring nitrogen N9. Indeed, a CSD search (Version 5.33, with Feb. 2012 update) indicates that this occurrence has been reported only 19 times whereas structures with BOC single binding are numbered in the multiple 1000's.
The crystal packing consists of a set of conventional N—H···O(water) and O—H···O(methanol, P, water) hydrogen bonds (see Table 1) which include bifurcations at both donors and acceptors with novel R21(6) and R12(6) motifs. These are supplemented by C—H···O interactions between adjacent molecules forming chain and R22(10) ring motifs (Bernstein et al., 1995).