metal-organic compounds
[1,2-Bis(diphenylphosphanyl)ethane-κ2P,P′]dichloridopalladium(II) dimethyl sulfoxide monosolvate
aDepartment of Chemistry, College of Science, King Saud University, PO Box 2455, Riyadh 11451, Saudi Arabia, bDepartment of Physics and Astronomy, College of Science, King Saud University, PO Box 2455, Riyadh 11451, Saudi Arabia, cElectronics, Communications and Photonics Program, King Abdulaziz City for Science and Technology, PO Box 6086, Riyadh 11442, Saudi Arabia, and dH.E.J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi, Karachi 75270, Pakistan
*Correspondence e-mail: dr.sammer.yousuf@gmail.com
In the title compound, [PdCl2(C26H24P2)]·C2H6OS, the PdII atom adopts a distorted cis-PdCl2P2 square-planar coordination geometry. The five-membered chelate ring adopts an with a methylene C atom in the flap position. The S and C atoms of the dimethyl sulfoxide (DMSO) solvent molecule are disordered over two sets of sites in a 0.8976 (18):0.1024 (18) ratio. The DMSO O atom accepts three C—H⋯O hydrogen bonds from an adjacent complex molecule.
Related literature
For the previous reports of crystal structures of this metal complex (unsolvated or with other solvents), see: Xu et al. (2008); Batsanov et al. (2001); Steffen & Palenik (1976); Singh et al. (1995).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2000); cell SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995) and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536812028310/hb6864sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812028310/hb6864Isup2.hkl
Equimolar amounts of dichlorobis(acetonitrile) palladium(II) (0.10 g, 0.26 mmol) was dissolved in 10 ml dry dichloromethane and mixed with equivalent amount of 1,2-ethanediylbis(diphenylphosphine) (0.11 g, 0.27 mmol). The resultant mixture was stirred under inert atmosphere (Ar) for about one hour. The solution was concentrated under reduced pressure to 1 ml volume. The product was precipitated by the addition of 30 ml of hexane. Then filtered off, washed with 40 ml of diethyl ether and dried under vacuum to obtained 0.12 g of title compound I (yield 78%). 20 mg of the product was dissolved in 5 ml of dry DMSO for crystallization. After one week, light orange color crystals were obtained which were found to be suitable for X-ray diffraction data collection. All chemicals were purchased from Acros (Belgium).
H Atoms on methyl, methylene and methine were positioned geometrically with C—H = 0.96 Å, 0.97 Å and 0.93 Å respectively, and constrained to ride on their parent atoms with Uiso(H)= 1.2Ueq (CH2, CH) and 1.5Ueq(CH3).
Metal complexes containing chelating diphosphines as ligands have been employed in numerous catalytic processes. A major advantage of these ligands is variation in their potential catalytic reactivity by varying the molecular properties of the phosphine. The title compound was synthesized as a part of our ongoing research to study the properties of metal complexes with chelating ligands.
The φ = 301.14 (17)°] with maximum deviation of 0.318 (2) Å for C26 atom from the least square plane. The Structural report of the compound is similar to many previously published reports with the difference that it has a DMSO solvate (Xu et al. 2008, Batsanov et al. 2001,Steffen & Palenik, 1976, Singh et al. 1995). The coordination environment around the Pd(II) ion is such that the two phosphorous atoms of the bidentate diphenyl phosphine ligand [Pd1–P1 = 2.2355 (5) Å, Pd1–P2 = 2.2336 (5) Å] and two chloride atoms [Pd1–Cl1= 2.3481 (6) Å, Pd1–Cl2= 2.3613 (5) Å] are assembled at four corners of square to adapt square pyramidal arrangement. The S1, C28 and C29 atoms of DMSO molecule are disordered at two positions,with relative occupancies of 0.89 (18):0.10 (18) for the isotropically refined major (S1/C27/C28) and minor (S1'/C27'/C28') components, respectively. All bond lengths are in agreement with the previously reported crystal structures (Xu et al. 2008, Batsanov et al. 2001, Steffen & Palenik, 1976, Singh et al. 1995). The oxygen atom of DMSO playing an important role in the by forming C2—H2···O1, C20—H20···O1 and C26—H26A···O1 hydrogen bonds (Table 2, Fig. 2).
of title compound, [PdCl2C26H24P2)].C6H6SO, consists of a bidentate diphenyl phosphine ligand and two chloride atoms coordinated with Pd(II) to adapt a distorted square planner geometry, along with an independent molecule of dimethyl sulfoxide (DMSO) as solvent (Fig. 1). The five membered metallocycle (Pd1/P1/P2/C25—C26) adopts an envelop conformation [Q= 0.466 (19) Å andThe compound was evaluated for its b-glucoronidase inhibiton activity against D-saccharic acid as standard (IC50 45.75 ± 2.16 mM) and found as weak inhibitor (IC50 197.3 ± 12.2 mM)
For the previous reports of crystal structures of this metal complex, (unsolvated or with other solvents), see: Xu et al. (2008); Batsanov et al. (2001); Steffen & Palenik (1976); Singh et al. (1995).
Data collection: SMART (Bruker, 2000); cell
SAINT (Bruker, 2000); data reduction: SAINT (Bruker, 2000); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008), PARST (Nardelli, 1995) and PLATON (Spek, 2009).[PdCl2(C26H24P2)]·C2H6OS | Z = 2 |
Mr = 653.82 | F(000) = 664 |
Triclinic, P1 | Dx = 1.505 Mg m−3 |
a = 8.4091 (3) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 11.4745 (4) Å | Cell parameters from 8463 reflections |
c = 16.8098 (6) Å | θ = 2.5–28.3° |
α = 73.674 (1)° | µ = 1.03 mm−1 |
β = 79.066 (1)° | T = 293 K |
γ = 68.634 (1)° | Block, orange |
V = 1442.67 (9) Å3 | 0.30 × 0.23 × 0.11 mm |
Bruker SMART APEX CCD diffractometer | 6610 independent reflections |
Radiation source: fine-focus sealed tube | 5863 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.022 |
ω scan | θmax = 27.5°, θmin = 1.3° |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | h = −10→10 |
Tmin = 0.747, Tmax = 0.895 | k = −14→14 |
19016 measured reflections | l = −21→21 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.027 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.069 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0363P)2 + 0.3766P] where P = (Fo2 + 2Fc2)/3 |
6610 reflections | (Δ/σ)max = 0.003 |
326 parameters | Δρmax = 0.50 e Å−3 |
3 restraints | Δρmin = −0.32 e Å−3 |
[PdCl2(C26H24P2)]·C2H6OS | γ = 68.634 (1)° |
Mr = 653.82 | V = 1442.67 (9) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.4091 (3) Å | Mo Kα radiation |
b = 11.4745 (4) Å | µ = 1.03 mm−1 |
c = 16.8098 (6) Å | T = 293 K |
α = 73.674 (1)° | 0.30 × 0.23 × 0.11 mm |
β = 79.066 (1)° |
Bruker SMART APEX CCD diffractometer | 6610 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | 5863 reflections with I > 2σ(I) |
Tmin = 0.747, Tmax = 0.895 | Rint = 0.022 |
19016 measured reflections |
R[F2 > 2σ(F2)] = 0.027 | 3 restraints |
wR(F2) = 0.069 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.50 e Å−3 |
6610 reflections | Δρmin = −0.32 e Å−3 |
326 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Pd1 | 0.505146 (17) | 0.668916 (13) | 0.771823 (8) | 0.02941 (5) | |
Cl1 | 0.25945 (8) | 0.81046 (6) | 0.82912 (5) | 0.06129 (17) | |
Cl2 | 0.34922 (7) | 0.55828 (5) | 0.73749 (4) | 0.04605 (13) | |
P1 | 0.74985 (6) | 0.53495 (5) | 0.72429 (3) | 0.03260 (11) | |
P2 | 0.67020 (6) | 0.76776 (5) | 0.79571 (3) | 0.03221 (11) | |
C1 | 0.7524 (3) | 0.5243 (2) | 0.61872 (13) | 0.0396 (5) | |
C2 | 0.7793 (3) | 0.6212 (3) | 0.55295 (15) | 0.0558 (6) | |
H2 | 0.8028 | 0.6887 | 0.5630 | 0.067* | |
C3 | 0.7714 (4) | 0.6179 (3) | 0.47218 (17) | 0.0725 (8) | |
H3 | 0.7894 | 0.6834 | 0.4281 | 0.087* | |
C4 | 0.7375 (3) | 0.5199 (4) | 0.45682 (18) | 0.0749 (9) | |
H4 | 0.7309 | 0.5189 | 0.4024 | 0.090* | |
C5 | 0.7133 (4) | 0.4230 (3) | 0.5210 (2) | 0.0759 (9) | |
H5 | 0.6921 | 0.3552 | 0.5099 | 0.091* | |
C6 | 0.7196 (3) | 0.4237 (3) | 0.60288 (17) | 0.0587 (6) | |
H6 | 0.7020 | 0.3575 | 0.6465 | 0.070* | |
C7 | 0.8124 (3) | 0.37111 (19) | 0.78653 (14) | 0.0411 (5) | |
C8 | 0.9678 (4) | 0.2825 (2) | 0.76568 (18) | 0.0645 (7) | |
H8 | 1.0381 | 0.3068 | 0.7189 | 0.077* | |
C9 | 1.0188 (4) | 0.1582 (3) | 0.8140 (2) | 0.0783 (9) | |
H9 | 1.1229 | 0.0991 | 0.7995 | 0.094* | |
C10 | 0.9171 (5) | 0.1225 (3) | 0.8827 (2) | 0.0771 (9) | |
H10 | 0.9504 | 0.0383 | 0.9143 | 0.093* | |
C11 | 0.7664 (4) | 0.2098 (3) | 0.9054 (2) | 0.0791 (9) | |
H11 | 0.6995 | 0.1858 | 0.9537 | 0.095* | |
C12 | 0.7125 (3) | 0.3341 (2) | 0.85681 (17) | 0.0583 (6) | |
H12 | 0.6083 | 0.3925 | 0.8719 | 0.070* | |
C13 | 0.7402 (3) | 0.7045 (2) | 0.89926 (12) | 0.0377 (4) | |
C14 | 0.8598 (3) | 0.7441 (3) | 0.92091 (17) | 0.0590 (6) | |
H14 | 0.9046 | 0.8027 | 0.8821 | 0.071* | |
C15 | 0.9125 (4) | 0.6965 (4) | 1.0000 (2) | 0.0791 (10) | |
H15 | 0.9929 | 0.7230 | 1.0147 | 0.095* | |
C16 | 0.8465 (4) | 0.6107 (3) | 1.05672 (18) | 0.0801 (10) | |
H16 | 0.8803 | 0.5805 | 1.1104 | 0.096* | |
C17 | 0.7318 (4) | 0.5686 (3) | 1.03572 (16) | 0.0731 (9) | |
H17 | 0.6912 | 0.5073 | 1.0743 | 0.088* | |
C18 | 0.6754 (3) | 0.6170 (2) | 0.95701 (14) | 0.0533 (6) | |
H18 | 0.5942 | 0.5905 | 0.9432 | 0.064* | |
C19 | 0.5851 (3) | 0.9401 (2) | 0.78165 (15) | 0.0441 (5) | |
C20 | 0.5855 (4) | 1.0192 (2) | 0.70303 (19) | 0.0670 (7) | |
H20 | 0.6291 | 0.9842 | 0.6566 | 0.080* | |
C21 | 0.5198 (5) | 1.1521 (3) | 0.6938 (3) | 0.0915 (11) | |
H21 | 0.5215 | 1.2056 | 0.6408 | 0.110* | |
C22 | 0.4539 (5) | 1.2048 (3) | 0.7599 (3) | 0.0980 (13) | |
H22 | 0.4109 | 1.2938 | 0.7524 | 0.118* | |
C23 | 0.4503 (5) | 1.1276 (3) | 0.8380 (3) | 0.0906 (11) | |
H23 | 0.4042 | 1.1641 | 0.8836 | 0.109* | |
C24 | 0.5150 (4) | 0.9944 (3) | 0.8497 (2) | 0.0661 (7) | |
H24 | 0.5113 | 0.9420 | 0.9030 | 0.079* | |
C25 | 0.9282 (3) | 0.5915 (2) | 0.72475 (14) | 0.0420 (5) | |
H25A | 0.9877 | 0.5425 | 0.7739 | 0.050* | |
H25B | 1.0091 | 0.5765 | 0.6762 | 0.050* | |
C26 | 0.8655 (3) | 0.7338 (2) | 0.72412 (13) | 0.0398 (5) | |
H26A | 0.8417 | 0.7850 | 0.6683 | 0.048* | |
H26B | 0.9529 | 0.7552 | 0.7416 | 0.048* | |
O1 | 0.8108 (4) | 0.9128 (2) | 0.52539 (14) | 0.1089 (9) | |
S1 | 0.76772 (16) | 0.97151 (11) | 0.43853 (6) | 0.0890 (3) | 0.8976 (18) |
C27 | 0.9635 (7) | 0.9661 (6) | 0.3762 (3) | 0.1181 (18) | 0.8976 (18) |
H27A | 1.0259 | 0.8793 | 0.3716 | 0.177* | 0.8976 (18) |
H27B | 1.0304 | 0.9957 | 0.4015 | 0.177* | 0.8976 (18) |
H27C | 0.9405 | 1.0204 | 0.3218 | 0.177* | 0.8976 (18) |
C28 | 0.6941 (10) | 1.1385 (4) | 0.4309 (3) | 0.173 (3) | 0.8976 (18) |
H28A | 0.5839 | 1.1627 | 0.4621 | 0.259* | 0.8976 (18) |
H28B | 0.6844 | 1.1833 | 0.3735 | 0.259* | 0.8976 (18) |
H28C | 0.7739 | 1.1605 | 0.4529 | 0.259* | 0.8976 (18) |
S1' | 0.8125 (14) | 1.0323 (6) | 0.4620 (5) | 0.0890 (3) | 0.1024 (18) |
C27' | 0.880 (7) | 0.957 (6) | 0.378 (3) | 0.1181 (18) | 0.1024 (18) |
H27D | 1.0007 | 0.9093 | 0.3777 | 0.177* | 0.1024 (18) |
H27E | 0.8594 | 1.0212 | 0.3264 | 0.177* | 0.1024 (18) |
H27F | 0.8176 | 0.8996 | 0.3830 | 0.177* | 0.1024 (18) |
C28' | 0.622 (4) | 1.075 (5) | 0.416 (3) | 0.173 (3) | 0.1024 (18) |
H28D | 0.5292 | 1.1302 | 0.4454 | 0.259* | 0.1024 (18) |
H28E | 0.5966 | 0.9987 | 0.4188 | 0.259* | 0.1024 (18) |
H28F | 0.6355 | 1.1193 | 0.3589 | 0.259* | 0.1024 (18) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Pd1 | 0.02598 (8) | 0.02756 (8) | 0.03349 (9) | −0.00798 (6) | −0.00470 (5) | −0.00518 (6) |
Cl1 | 0.0388 (3) | 0.0489 (3) | 0.0917 (5) | −0.0079 (2) | 0.0116 (3) | −0.0302 (3) |
Cl2 | 0.0400 (3) | 0.0497 (3) | 0.0574 (3) | −0.0209 (2) | −0.0106 (2) | −0.0140 (2) |
P1 | 0.0292 (2) | 0.0319 (2) | 0.0360 (3) | −0.0073 (2) | −0.00501 (19) | −0.0095 (2) |
P2 | 0.0341 (3) | 0.0296 (2) | 0.0341 (3) | −0.0124 (2) | −0.0048 (2) | −0.0057 (2) |
C1 | 0.0316 (10) | 0.0470 (12) | 0.0391 (11) | −0.0070 (9) | −0.0028 (8) | −0.0168 (9) |
C2 | 0.0657 (16) | 0.0572 (15) | 0.0435 (13) | −0.0190 (12) | −0.0054 (11) | −0.0119 (11) |
C3 | 0.076 (2) | 0.094 (2) | 0.0397 (14) | −0.0225 (17) | −0.0052 (13) | −0.0122 (14) |
C4 | 0.0483 (15) | 0.125 (3) | 0.0518 (16) | −0.0118 (16) | −0.0026 (12) | −0.0455 (18) |
C5 | 0.0706 (19) | 0.100 (2) | 0.081 (2) | −0.0303 (18) | −0.0044 (16) | −0.056 (2) |
C6 | 0.0609 (16) | 0.0675 (17) | 0.0606 (15) | −0.0280 (13) | −0.0019 (12) | −0.0280 (13) |
C7 | 0.0420 (11) | 0.0322 (10) | 0.0478 (12) | −0.0070 (9) | −0.0131 (9) | −0.0085 (9) |
C8 | 0.0594 (16) | 0.0461 (14) | 0.0703 (17) | 0.0026 (12) | −0.0053 (13) | −0.0137 (13) |
C9 | 0.078 (2) | 0.0410 (15) | 0.101 (2) | 0.0086 (14) | −0.0300 (18) | −0.0182 (15) |
C10 | 0.094 (2) | 0.0361 (13) | 0.100 (2) | −0.0154 (15) | −0.052 (2) | 0.0062 (15) |
C11 | 0.084 (2) | 0.0604 (18) | 0.081 (2) | −0.0317 (17) | −0.0205 (17) | 0.0196 (16) |
C12 | 0.0531 (15) | 0.0455 (13) | 0.0656 (16) | −0.0131 (11) | −0.0091 (12) | 0.0014 (12) |
C13 | 0.0366 (11) | 0.0408 (11) | 0.0351 (10) | −0.0087 (9) | −0.0056 (8) | −0.0117 (8) |
C14 | 0.0565 (15) | 0.0703 (17) | 0.0601 (15) | −0.0226 (13) | −0.0163 (12) | −0.0210 (13) |
C15 | 0.0661 (19) | 0.104 (3) | 0.076 (2) | −0.0095 (18) | −0.0327 (16) | −0.043 (2) |
C16 | 0.071 (2) | 0.102 (3) | 0.0429 (15) | 0.0130 (18) | −0.0222 (14) | −0.0224 (16) |
C17 | 0.0649 (18) | 0.086 (2) | 0.0373 (13) | −0.0029 (15) | −0.0014 (12) | 0.0021 (13) |
C18 | 0.0480 (13) | 0.0631 (15) | 0.0407 (12) | −0.0158 (12) | −0.0032 (10) | −0.0036 (11) |
C19 | 0.0403 (11) | 0.0307 (10) | 0.0646 (14) | −0.0139 (9) | −0.0121 (10) | −0.0085 (10) |
C20 | 0.0733 (18) | 0.0414 (13) | 0.0762 (19) | −0.0169 (13) | −0.0125 (15) | 0.0028 (13) |
C21 | 0.089 (2) | 0.0416 (16) | 0.124 (3) | −0.0207 (16) | −0.023 (2) | 0.0172 (18) |
C22 | 0.075 (2) | 0.0347 (15) | 0.183 (4) | −0.0124 (15) | −0.031 (3) | −0.019 (2) |
C23 | 0.084 (2) | 0.0547 (18) | 0.140 (3) | −0.0040 (16) | −0.019 (2) | −0.054 (2) |
C24 | 0.0710 (18) | 0.0453 (14) | 0.0830 (19) | −0.0094 (13) | −0.0119 (15) | −0.0267 (14) |
C25 | 0.0282 (10) | 0.0505 (12) | 0.0492 (12) | −0.0116 (9) | −0.0042 (9) | −0.0158 (10) |
C26 | 0.0379 (11) | 0.0453 (12) | 0.0392 (11) | −0.0205 (9) | −0.0014 (8) | −0.0070 (9) |
O1 | 0.171 (3) | 0.0846 (16) | 0.0628 (14) | −0.0520 (18) | −0.0197 (15) | 0.0146 (12) |
S1 | 0.1244 (9) | 0.0899 (7) | 0.0686 (6) | −0.0583 (7) | −0.0235 (6) | −0.0026 (5) |
C27 | 0.119 (4) | 0.164 (5) | 0.083 (3) | −0.062 (4) | 0.002 (3) | −0.033 (3) |
C28 | 0.277 (8) | 0.071 (3) | 0.097 (4) | 0.021 (4) | −0.036 (4) | 0.000 (3) |
S1' | 0.1244 (9) | 0.0899 (7) | 0.0686 (6) | −0.0583 (7) | −0.0235 (6) | −0.0026 (5) |
C27' | 0.119 (4) | 0.164 (5) | 0.083 (3) | −0.062 (4) | 0.002 (3) | −0.033 (3) |
C28' | 0.277 (8) | 0.071 (3) | 0.097 (4) | 0.021 (4) | −0.036 (4) | 0.000 (3) |
Pd1—P2 | 2.2336 (5) | C16—H16 | 0.9300 |
Pd1—P1 | 2.2355 (5) | C17—C18 | 1.384 (3) |
Pd1—Cl1 | 2.3481 (6) | C17—H17 | 0.9300 |
Pd1—Cl2 | 2.3613 (5) | C18—H18 | 0.9300 |
P1—C1 | 1.808 (2) | C19—C20 | 1.377 (3) |
P1—C7 | 1.813 (2) | C19—C24 | 1.387 (4) |
P1—C25 | 1.840 (2) | C20—C21 | 1.394 (4) |
P2—C19 | 1.802 (2) | C20—H20 | 0.9300 |
P2—C13 | 1.808 (2) | C21—C22 | 1.344 (5) |
P2—C26 | 1.829 (2) | C21—H21 | 0.9300 |
C1—C2 | 1.381 (3) | C22—C23 | 1.364 (5) |
C1—C6 | 1.382 (3) | C22—H22 | 0.9300 |
C2—C3 | 1.384 (4) | C23—C24 | 1.391 (4) |
C2—H2 | 0.9300 | C23—H23 | 0.9300 |
C3—C4 | 1.355 (5) | C24—H24 | 0.9300 |
C3—H3 | 0.9300 | C25—C26 | 1.520 (3) |
C4—C5 | 1.360 (5) | C25—H25A | 0.9700 |
C4—H4 | 0.9300 | C25—H25B | 0.9700 |
C5—C6 | 1.390 (4) | C26—H26A | 0.9700 |
C5—H5 | 0.9300 | C26—H26B | 0.9700 |
C6—H6 | 0.9300 | O1—S1 | 1.479 (2) |
C7—C12 | 1.373 (3) | O1—S1' | 1.484 (2) |
C7—C8 | 1.386 (3) | S1—C28 | 1.760 (5) |
C8—C9 | 1.383 (4) | S1—C27 | 1.766 (5) |
C8—H8 | 0.9300 | C27—H27A | 0.9600 |
C9—C10 | 1.359 (5) | C27—H27B | 0.9600 |
C9—H9 | 0.9300 | C27—H27C | 0.9600 |
C10—C11 | 1.365 (5) | C28—H28A | 0.9600 |
C10—H10 | 0.9300 | C28—H28B | 0.9600 |
C11—C12 | 1.386 (4) | C28—H28C | 0.9600 |
C11—H11 | 0.9300 | S1'—C28' | 1.759 (5) |
C12—H12 | 0.9300 | S1'—C27' | 1.762 (5) |
C13—C18 | 1.377 (3) | C27'—H27D | 0.9600 |
C13—C14 | 1.384 (3) | C27'—H27E | 0.9600 |
C14—C15 | 1.380 (4) | C27'—H27F | 0.9600 |
C14—H14 | 0.9300 | C28'—H28D | 0.9600 |
C15—C16 | 1.362 (5) | C28'—H28E | 0.9600 |
C15—H15 | 0.9300 | C28'—H28F | 0.9600 |
C16—C17 | 1.362 (5) | ||
P2—Pd1—P1 | 85.603 (19) | C16—C17—H17 | 120.0 |
P2—Pd1—Cl1 | 90.93 (2) | C18—C17—H17 | 120.0 |
P1—Pd1—Cl1 | 175.75 (2) | C13—C18—C17 | 119.7 (3) |
P2—Pd1—Cl2 | 175.049 (19) | C13—C18—H18 | 120.1 |
P1—Pd1—Cl2 | 89.95 (2) | C17—C18—H18 | 120.1 |
Cl1—Pd1—Cl2 | 93.61 (2) | C20—C19—C24 | 119.3 (2) |
C1—P1—C7 | 106.37 (10) | C20—C19—P2 | 120.4 (2) |
C1—P1—C25 | 106.61 (10) | C24—C19—P2 | 120.34 (19) |
C7—P1—C25 | 104.57 (10) | C19—C20—C21 | 119.3 (3) |
C1—P1—Pd1 | 114.01 (7) | C19—C20—H20 | 120.4 |
C7—P1—Pd1 | 115.28 (8) | C21—C20—H20 | 120.4 |
C25—P1—Pd1 | 109.25 (7) | C22—C21—C20 | 121.4 (3) |
C19—P2—C13 | 106.06 (10) | C22—C21—H21 | 119.3 |
C19—P2—C26 | 106.39 (10) | C20—C21—H21 | 119.3 |
C13—P2—C26 | 105.79 (10) | C21—C22—C23 | 119.9 (3) |
C19—P2—Pd1 | 118.01 (7) | C21—C22—H22 | 120.1 |
C13—P2—Pd1 | 112.48 (7) | C23—C22—H22 | 120.1 |
C26—P2—Pd1 | 107.32 (7) | C22—C23—C24 | 120.4 (3) |
C2—C1—C6 | 119.4 (2) | C22—C23—H23 | 119.8 |
C2—C1—P1 | 119.55 (17) | C24—C23—H23 | 119.8 |
C6—C1—P1 | 121.01 (18) | C19—C24—C23 | 119.7 (3) |
C1—C2—C3 | 120.1 (3) | C19—C24—H24 | 120.1 |
C1—C2—H2 | 120.0 | C23—C24—H24 | 120.1 |
C3—C2—H2 | 120.0 | C26—C25—P1 | 111.70 (14) |
C4—C3—C2 | 120.5 (3) | C26—C25—H25A | 109.3 |
C4—C3—H3 | 119.7 | P1—C25—H25A | 109.3 |
C2—C3—H3 | 119.7 | C26—C25—H25B | 109.3 |
C3—C4—C5 | 120.0 (3) | P1—C25—H25B | 109.3 |
C3—C4—H4 | 120.0 | H25A—C25—H25B | 107.9 |
C5—C4—H4 | 120.0 | C25—C26—P2 | 108.28 (14) |
C4—C5—C6 | 120.9 (3) | C25—C26—H26A | 110.0 |
C4—C5—H5 | 119.5 | P2—C26—H26A | 110.0 |
C6—C5—H5 | 119.5 | C25—C26—H26B | 110.0 |
C1—C6—C5 | 119.2 (3) | P2—C26—H26B | 110.0 |
C1—C6—H6 | 120.4 | H26A—C26—H26B | 108.4 |
C5—C6—H6 | 120.4 | S1—O1—S1' | 43.2 (4) |
C12—C7—C8 | 118.8 (2) | O1—S1—C28 | 104.8 (2) |
C12—C7—P1 | 121.18 (17) | O1—S1—C27 | 106.6 (2) |
C8—C7—P1 | 119.89 (19) | C28—S1—C27 | 95.9 (3) |
C9—C8—C7 | 120.3 (3) | S1—C27—H27A | 109.5 |
C9—C8—H8 | 119.8 | S1—C27—H27B | 109.5 |
C7—C8—H8 | 119.8 | H27A—C27—H27B | 109.5 |
C10—C9—C8 | 120.1 (3) | S1—C27—H27C | 109.5 |
C10—C9—H9 | 120.0 | H27A—C27—H27C | 109.5 |
C8—C9—H9 | 120.0 | H27B—C27—H27C | 109.5 |
C9—C10—C11 | 120.2 (3) | S1—C28—H28A | 109.5 |
C9—C10—H10 | 119.9 | S1—C28—H28B | 109.5 |
C11—C10—H10 | 119.9 | H28A—C28—H28B | 109.5 |
C10—C11—C12 | 120.3 (3) | S1—C28—H28C | 109.5 |
C10—C11—H11 | 119.9 | H28A—C28—H28C | 109.5 |
C12—C11—H11 | 119.9 | H28B—C28—H28C | 109.5 |
C7—C12—C11 | 120.2 (3) | O1—S1'—C28' | 102.2 (18) |
C7—C12—H12 | 119.9 | O1—S1'—C27' | 95 (2) |
C11—C12—H12 | 119.9 | C28'—S1'—C27' | 77 (3) |
C18—C13—C14 | 119.5 (2) | S1'—C27'—H27D | 109.5 |
C18—C13—P2 | 120.55 (17) | S1'—C27'—H27E | 109.5 |
C14—C13—P2 | 119.91 (18) | H27D—C27'—H27E | 109.5 |
C15—C14—C13 | 120.0 (3) | S1'—C27'—H27F | 109.5 |
C15—C14—H14 | 120.0 | H27D—C27'—H27F | 109.5 |
C13—C14—H14 | 120.0 | H27E—C27'—H27F | 109.5 |
C16—C15—C14 | 119.8 (3) | S1'—C28'—H28D | 109.5 |
C16—C15—H15 | 120.1 | S1'—C28'—H28E | 109.5 |
C14—C15—H15 | 120.1 | H28D—C28'—H28E | 109.5 |
C17—C16—C15 | 120.8 (3) | S1'—C28'—H28F | 109.5 |
C17—C16—H16 | 119.6 | H28D—C28'—H28F | 109.5 |
C15—C16—H16 | 119.6 | H28E—C28'—H28F | 109.5 |
C16—C17—C18 | 120.0 (3) | ||
P2—Pd1—P1—C1 | −123.79 (8) | C8—C7—C12—C11 | −0.5 (4) |
Cl1—Pd1—P1—C1 | −159.1 (3) | P1—C7—C12—C11 | −177.2 (2) |
Cl2—Pd1—P1—C1 | 54.04 (8) | C10—C11—C12—C7 | −1.6 (5) |
P2—Pd1—P1—C7 | 112.73 (8) | C19—P2—C13—C18 | 122.64 (19) |
Cl1—Pd1—P1—C7 | 77.5 (3) | C26—P2—C13—C18 | −124.61 (19) |
Cl2—Pd1—P1—C7 | −69.44 (8) | Pd1—P2—C13—C18 | −7.8 (2) |
P2—Pd1—P1—C25 | −4.64 (8) | C19—P2—C13—C14 | −57.4 (2) |
Cl1—Pd1—P1—C25 | −39.9 (3) | C26—P2—C13—C14 | 55.4 (2) |
Cl2—Pd1—P1—C25 | 173.19 (8) | Pd1—P2—C13—C14 | 172.25 (17) |
P1—Pd1—P2—C19 | 145.15 (9) | C18—C13—C14—C15 | −0.4 (4) |
Cl1—Pd1—P2—C19 | −37.30 (9) | P2—C13—C14—C15 | 179.6 (2) |
Cl2—Pd1—P2—C19 | 119.1 (2) | C13—C14—C15—C16 | 0.0 (4) |
P1—Pd1—P2—C13 | −90.85 (7) | C14—C15—C16—C17 | 1.6 (5) |
Cl1—Pd1—P2—C13 | 86.70 (7) | C15—C16—C17—C18 | −2.6 (5) |
Cl2—Pd1—P2—C13 | −116.9 (2) | C14—C13—C18—C17 | −0.6 (4) |
P1—Pd1—P2—C26 | 25.10 (8) | P2—C13—C18—C17 | 179.4 (2) |
Cl1—Pd1—P2—C26 | −157.35 (8) | C16—C17—C18—C13 | 2.2 (4) |
Cl2—Pd1—P2—C26 | −0.9 (2) | C13—P2—C19—C20 | 153.5 (2) |
C7—P1—C1—C2 | −153.83 (19) | C26—P2—C19—C20 | 41.2 (2) |
C25—P1—C1—C2 | −42.6 (2) | Pd1—P2—C19—C20 | −79.3 (2) |
Pd1—P1—C1—C2 | 77.99 (19) | C13—P2—C19—C24 | −28.0 (2) |
C7—P1—C1—C6 | 29.3 (2) | C26—P2—C19—C24 | −140.3 (2) |
C25—P1—C1—C6 | 140.52 (19) | Pd1—P2—C19—C24 | 99.2 (2) |
Pd1—P1—C1—C6 | −98.85 (19) | C24—C19—C20—C21 | 1.8 (4) |
C6—C1—C2—C3 | 0.8 (4) | P2—C19—C20—C21 | −179.7 (2) |
P1—C1—C2—C3 | −176.1 (2) | C19—C20—C21—C22 | −0.9 (5) |
C1—C2—C3—C4 | −0.1 (4) | C20—C21—C22—C23 | −0.1 (6) |
C2—C3—C4—C5 | −0.8 (5) | C21—C22—C23—C24 | 0.3 (6) |
C3—C4—C5—C6 | 1.2 (5) | C20—C19—C24—C23 | −1.7 (4) |
C2—C1—C6—C5 | −0.4 (4) | P2—C19—C24—C23 | 179.8 (2) |
P1—C1—C6—C5 | 176.4 (2) | C22—C23—C24—C19 | 0.6 (5) |
C4—C5—C6—C1 | −0.5 (4) | C1—P1—C25—C26 | 101.86 (16) |
C1—P1—C7—C12 | −126.3 (2) | C7—P1—C25—C26 | −145.72 (15) |
C25—P1—C7—C12 | 121.1 (2) | Pd1—P1—C25—C26 | −21.79 (17) |
Pd1—P1—C7—C12 | 1.1 (2) | P1—C25—C26—P2 | 42.01 (18) |
C1—P1—C7—C8 | 56.9 (2) | C19—P2—C26—C25 | −172.09 (14) |
C25—P1—C7—C8 | −55.7 (2) | C13—P2—C26—C25 | 75.39 (16) |
Pd1—P1—C7—C8 | −175.66 (18) | Pd1—P2—C26—C25 | −44.90 (15) |
C12—C7—C8—C9 | 1.4 (4) | S1'—O1—S1—C28 | −31.7 (7) |
P1—C7—C8—C9 | 178.3 (2) | S1'—O1—S1—C27 | 69.2 (7) |
C7—C8—C9—C10 | −0.4 (5) | S1—O1—S1'—C28' | 40.1 (19) |
C8—C9—C10—C11 | −1.7 (5) | S1—O1—S1'—C27' | −37.4 (18) |
C9—C10—C11—C12 | 2.6 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2···O1 | 0.93 | 2.49 | 3.348 (4) | 153 |
C20—H20···O1 | 0.93 | 2.59 | 3.495 (4) | 165 |
C26—H26A···O1 | 0.97 | 2.44 | 3.410 (3) | 174 |
Experimental details
Crystal data | |
Chemical formula | [PdCl2(C26H24P2)]·C2H6OS |
Mr | 653.82 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 8.4091 (3), 11.4745 (4), 16.8098 (6) |
α, β, γ (°) | 73.674 (1), 79.066 (1), 68.634 (1) |
V (Å3) | 1442.67 (9) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.03 |
Crystal size (mm) | 0.30 × 0.23 × 0.11 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2000) |
Tmin, Tmax | 0.747, 0.895 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 19016, 6610, 5863 |
Rint | 0.022 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.027, 0.069, 1.03 |
No. of reflections | 6610 |
No. of parameters | 326 |
No. of restraints | 3 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.50, −0.32 |
Computer programs: SMART (Bruker, 2000), SAINT (Bruker, 2000), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008), PARST (Nardelli, 1995) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2···O1 | 0.93 | 2.49 | 3.348 (4) | 153 |
C20—H20···O1 | 0.93 | 2.59 | 3.495 (4) | 165 |
C26—H26A···O1 | 0.97 | 2.44 | 3.410 (3) | 174 |
Acknowledgements
The project was supported by King Saud University, Deanship of Scientific Research, College of Science Research Center. MIC and SY gratefully acknowledges the Pakistan Academy of Sciences for funding the project entitled `Study of molecular structures and drugability potential of new inhibitors of β-glucuronidase by single-crystal X-ray diffraction and NMR spectroscopic techniques'.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Metal complexes containing chelating diphosphines as ligands have been employed in numerous catalytic processes. A major advantage of these ligands is variation in their potential catalytic reactivity by varying the molecular properties of the phosphine. The title compound was synthesized as a part of our ongoing research to study the properties of metal complexes with chelating ligands.
The crystal structure of title compound, [PdCl2C26H24P2)].C6H6SO, consists of a bidentate diphenyl phosphine ligand and two chloride atoms coordinated with Pd(II) to adapt a distorted square planner geometry, along with an independent molecule of dimethyl sulfoxide (DMSO) as solvent (Fig. 1). The five membered metallocycle (Pd1/P1/P2/C25—C26) adopts an envelop conformation [Q= 0.466 (19) Å and φ = 301.14 (17)°] with maximum deviation of 0.318 (2) Å for C26 atom from the least square plane. The Structural report of the compound is similar to many previously published reports with the difference that it has a DMSO solvate (Xu et al. 2008, Batsanov et al. 2001,Steffen & Palenik, 1976, Singh et al. 1995). The coordination environment around the Pd(II) ion is such that the two phosphorous atoms of the bidentate diphenyl phosphine ligand [Pd1–P1 = 2.2355 (5) Å, Pd1–P2 = 2.2336 (5) Å] and two chloride atoms [Pd1–Cl1= 2.3481 (6) Å, Pd1–Cl2= 2.3613 (5) Å] are assembled at four corners of square to adapt square pyramidal arrangement. The S1, C28 and C29 atoms of DMSO molecule are disordered at two positions,with relative occupancies of 0.89 (18):0.10 (18) for the isotropically refined major (S1/C27/C28) and minor (S1'/C27'/C28') components, respectively. All bond lengths are in agreement with the previously reported crystal structures (Xu et al. 2008, Batsanov et al. 2001, Steffen & Palenik, 1976, Singh et al. 1995). The oxygen atom of DMSO playing an important role in the crystal structure by forming C2—H2···O1, C20—H20···O1 and C26—H26A···O1 hydrogen bonds (Table 2, Fig. 2).
The compound was evaluated for its b-glucoronidase inhibiton activity against D-saccharic acid as standard (IC50 45.75 ± 2.16 mM) and found as weak inhibitor (IC50 197.3 ± 12.2 mM)