organic compounds
2-Dimethylamino-1-(2-ethoxy-2-oxoethyl)-3-methyl-3,4,5,6-tetrahydropyrimidin-1-ium tetraphenylborate
aInstitut für Organische Chemie, Universität Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany, and bFakultät Chemie/Organische Chemie, Hochschule Aalen, Beethovenstrasse 1, D-73430 Aalen, Germany
*Correspondence e-mail: willi.kantlehner@htw-aalen.de
Isolated guanidinium ions and tetraphenylborate ions are present in the 11H22N3O2+·C24H20B−. In the guanidinium ion, the dihedral angle between the N/C/N and C/C/C planes being 49.9 (1)°. The six-membered ring exhibits a half-chair conformation. The C—N bond lengths in the cation range between 1.3335 (16) and 1.3552 (16) Å, indicating charge delocalization on the CN3 plane. In the crystal, the cations are connected by C—H⋯O hydrogen bonds, generating a chain along the c axis.
of the title compound, CRelated literature
For the synthesis and nematocidal activity of arylvinyltetrahydropyrimidines, see: Kraouti et al. (1993). For the synthesis and nematocidal activity of pyrantel analogs, see: Kraouti et al. (1995). For the synthesis of 1-methyl-2-dimethylamino-1,4,5,6-tetrahydropyrimidine and derived cyclic guanidinium salts, see: Tiritiris & Kantlehner (2012).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: COLLECT (Hooft, 2004); cell HKL SCALEPACK (Otwinowski & Minor, 1997); data reduction: HKL SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Putz, 2005); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536812023951/kp2422sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812023951/kp2422Isup2.hkl
The title compound was obtained by reaction of 1-methyl-2-dimethylamino-1,4,5,6-tetrahydropyrimidine with bromoacetic acid ethyl ester in acetonitrile at room temperature. After evaporation of the solvent the crude 2-dimethylamino-3-ethoxycarbonylmethyl-1-methyl-1,4,5,6- tetrahydropyrimidinium-bromide (I) was washed with diethylether and dried in vacuo. 1.05 g (3.4 mmol) of (I) was dissolved in 20 mL acetonitrile and 1.16 g (3.4 mmol) of sodium tetraphenylborate in 10 mL acetonitrile was added. After stirring for one h at room temperature, the precipitated sodium bromide was filtered off. The title compound crystallised from a saturated acetonitrile solution after several days at 273 K, forming colourless single crystals. Yield: 1.43 g (78.8%).
The hydrogen atoms of the methyl groups were allowed to rotate with a fixed angle around the C–N bond to best fit the experimental electron density, with U(H) set to 1.5 Ueq(C) and d(C—H) = 0.98 Å. The remaining H atoms were placed in calculated positions with d(C—H) = 0.99 Å (H atoms in CH2 groups) and (C—H) = 0.95 Å (H atoms in aromatic rings). They were included in the
in the riding model approximation, with U(H) set to 1.2 Ueq(C).Tetrahydropyrimidine derivatives very often show pharmacologic activity. Prominent members are the cyclic
oxantel (Kraouti et al., 1993) and pyrantel (Kraouti et al., 1995), which are showing an anthelmintic effect against intestinal nematode infestations in humans and animals. 1-Methyl-2-dimethylamino-1,4,5,6-tetrahydropyrimidine (Tiritiris & Kantlehner, 2012), a cyclic guanidine derivative synthesized by us recently, could be used as a new candidate for preparing potentially pharmacologically active compounds in this field. By alkylation of the free nitrogen of the guanidine base, various cyclic guanidinium salts have been obtained and characterised (Tiritiris & Kantlehner, 2012). One of them, is the here presented title compound (Fig. 1). In the of the salt,isolated cations and anions are present. No specific interactions between the guanidinium ions and the tetraphenylborate ions have been observed. Prominent bond parameters in the guanidinium ion are: C1–N1 = 1.355 (2) Å, C1–N2 = 1.334 (2) Å and C1–N3 = 1.343 (2) Å. The N–C1–N angles are: 120.0 (1)° (N1–C1–N2), 120.3 (1)° (N2–C1–N3) and 119.8 (1)° (N1–C1–N3), which indicates a nearly ideal trigonal-planar surrounding of the carbon centre by the nitrogen atoms. The positive charge is completely delocalized on the CN3 plane. Bond lengths between carbon and oxygen atoms in the ethoxycarbonylmethyl group are: C9–O1 = 1.206 (2) Å, C9–O2 = 1.333 (2) Å and C10–O2 = 1.467 (2) Å. The six membered ring is non planar (Fig. 1). The carbon atom C6 is not in the ring plane, the angle between the planes N3/C1/N2 and C5/C6/C7 is 49.9 (1)°. Finally, weak C–H···O hydrogen bonds between methylene hydrogen atoms and carbonyl oxygen atoms of neighbouring guanidinium ions have been determined [d(H···O) = 2.44 Å] (Tab. 1). The cations are connected by C–H···O hydrogen bonds, generating a chain (Fig. 2). The anions are packed inbetween these chains using van der Waals interactions, only.
For the synthesis and nematocidal activity of arylvinyltetrahydropyrimidines, see: Kraouti et al. (1993). For the synthesis and nematocidal activity of pyrantel analogs, see: Kraouti et al. (1995). For the synthesis of 1-methyl-2-dimethylamino-1,4,5,6-tetrahydropyrimidine and derived cyclic guanidinium salts, see: Tiritiris & Kantlehner (2012).
Data collection: COLLECT (Hooft, 2004); cell
HKL SCALEPACK (Otwinowski & Minor, 1997); data reduction: HKL SCALEPACK (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Putz, 2005); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C11H22N3O2+·C24H20B− | F(000) = 1176 |
Mr = 547.53 | Dx = 1.233 Mg m−3 |
Monoclinic, P21/c | Melting point: 458 K |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 14.3582 (5) Å | Cell parameters from 7081 reflections |
b = 10.3377 (3) Å | θ = 0.4–27.5° |
c = 20.6302 (9) Å | µ = 0.08 mm−1 |
β = 105.615 (1)° | T = 100 K |
V = 2949.14 (19) Å3 | Polyhedral, colourless |
Z = 4 | 0.23 × 0.16 × 0.13 mm |
Bruker–Nonius Kappa CCD diffractometer | 5041 reflections with I > 2σ(I) |
Radiation source: sealed tube | Rint = 0.035 |
Graphite monochromator | θmax = 27.5°, θmin = 1.5° |
φ scans, and ω scans | h = −18→18 |
13034 measured reflections | k = −13→13 |
6747 independent reflections | l = −26→26 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.097 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0412P)2 + 0.9044P] where P = (Fo2 + 2Fc2)/3 |
6747 reflections | (Δ/σ)max < 0.001 |
374 parameters | Δρmax = 0.30 e Å−3 |
0 restraints | Δρmin = −0.21 e Å−3 |
C11H22N3O2+·C24H20B− | V = 2949.14 (19) Å3 |
Mr = 547.53 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 14.3582 (5) Å | µ = 0.08 mm−1 |
b = 10.3377 (3) Å | T = 100 K |
c = 20.6302 (9) Å | 0.23 × 0.16 × 0.13 mm |
β = 105.615 (1)° |
Bruker–Nonius Kappa CCD diffractometer | 5041 reflections with I > 2σ(I) |
13034 measured reflections | Rint = 0.035 |
6747 independent reflections |
R[F2 > 2σ(F2)] = 0.040 | 0 restraints |
wR(F2) = 0.097 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.30 e Å−3 |
6747 reflections | Δρmin = −0.21 e Å−3 |
374 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.28958 (8) | 0.25769 (11) | 0.34347 (6) | 0.0115 (3) | |
N1 | 0.27143 (7) | 0.17051 (10) | 0.38759 (5) | 0.0139 (2) | |
C2 | 0.17367 (9) | 0.12719 (13) | 0.38452 (7) | 0.0175 (3) | |
H2A | 0.1273 | 0.1724 | 0.3480 | 0.026* | |
H2B | 0.1593 | 0.1462 | 0.4273 | 0.026* | |
H2C | 0.1687 | 0.0338 | 0.3762 | 0.026* | |
C3 | 0.34770 (9) | 0.12482 (13) | 0.44516 (7) | 0.0173 (3) | |
H3A | 0.4109 | 0.1504 | 0.4397 | 0.026* | |
H3B | 0.3446 | 0.0303 | 0.4479 | 0.026* | |
H3C | 0.3388 | 0.1631 | 0.4866 | 0.026* | |
N2 | 0.34721 (7) | 0.35845 (10) | 0.36596 (5) | 0.0130 (2) | |
C4 | 0.35502 (10) | 0.41502 (13) | 0.43243 (6) | 0.0175 (3) | |
H4A | 0.3116 | 0.3692 | 0.4540 | 0.026* | |
H4B | 0.3369 | 0.5066 | 0.4273 | 0.026* | |
H4C | 0.4218 | 0.4071 | 0.4604 | 0.026* | |
C5 | 0.37840 (9) | 0.44036 (12) | 0.31723 (6) | 0.0151 (3) | |
H5A | 0.4279 | 0.3948 | 0.3005 | 0.018* | |
H5B | 0.4068 | 0.5219 | 0.3390 | 0.018* | |
C6 | 0.29063 (9) | 0.46922 (12) | 0.25951 (7) | 0.0163 (3) | |
H6A | 0.2405 | 0.5133 | 0.2764 | 0.020* | |
H6B | 0.3087 | 0.5266 | 0.2264 | 0.020* | |
C7 | 0.25227 (10) | 0.34237 (13) | 0.22685 (6) | 0.0177 (3) | |
H7A | 0.1860 | 0.3555 | 0.1975 | 0.021* | |
H7B | 0.2935 | 0.3128 | 0.1983 | 0.021* | |
N3 | 0.25016 (7) | 0.24143 (10) | 0.27716 (5) | 0.0130 (2) | |
C8 | 0.21616 (9) | 0.11507 (12) | 0.24902 (6) | 0.0146 (3) | |
H8A | 0.2400 | 0.0478 | 0.2837 | 0.017* | |
H8B | 0.2435 | 0.0966 | 0.2108 | 0.017* | |
C9 | 0.10628 (9) | 0.10783 (12) | 0.22489 (6) | 0.0147 (3) | |
O1 | 0.05354 (6) | 0.20070 (9) | 0.21392 (5) | 0.0202 (2) | |
O2 | 0.07769 (6) | −0.01524 (9) | 0.21815 (5) | 0.0186 (2) | |
C10 | −0.02683 (9) | −0.03720 (13) | 0.19344 (7) | 0.0199 (3) | |
H10A | −0.0618 | 0.0332 | 0.2094 | 0.024* | |
H10B | −0.0437 | −0.1199 | 0.2117 | 0.024* | |
C11 | −0.05773 (10) | −0.04170 (14) | 0.11791 (7) | 0.0229 (3) | |
H11A | −0.0420 | 0.0407 | 0.0999 | 0.034* | |
H11B | −0.1276 | −0.0566 | 0.1024 | 0.034* | |
H11C | −0.0237 | −0.1121 | 0.1021 | 0.034* | |
B1 | 0.72345 (10) | 0.26120 (14) | 0.43053 (7) | 0.0121 (3) | |
C12 | 0.62846 (8) | 0.20787 (11) | 0.37300 (6) | 0.0118 (2) | |
C13 | 0.57673 (9) | 0.09718 (12) | 0.38220 (6) | 0.0158 (3) | |
H13A | 0.5935 | 0.0560 | 0.4249 | 0.019* | |
C14 | 0.50187 (9) | 0.04537 (13) | 0.33128 (7) | 0.0181 (3) | |
H14A | 0.4681 | −0.0289 | 0.3400 | 0.022* | |
C15 | 0.47629 (9) | 0.10144 (13) | 0.26797 (7) | 0.0162 (3) | |
H15A | 0.4251 | 0.0666 | 0.2331 | 0.019* | |
C16 | 0.52690 (9) | 0.20960 (12) | 0.25643 (6) | 0.0151 (3) | |
H16A | 0.5109 | 0.2487 | 0.2132 | 0.018* | |
C17 | 0.60097 (9) | 0.26084 (12) | 0.30805 (6) | 0.0131 (3) | |
H17A | 0.6344 | 0.3350 | 0.2989 | 0.016* | |
C18 | 0.73770 (9) | 0.41831 (12) | 0.42497 (6) | 0.0126 (3) | |
C19 | 0.65918 (9) | 0.50381 (12) | 0.40846 (6) | 0.0142 (3) | |
H19A | 0.5956 | 0.4691 | 0.3960 | 0.017* | |
C20 | 0.67052 (10) | 0.63761 (12) | 0.40953 (6) | 0.0165 (3) | |
H20A | 0.6152 | 0.6920 | 0.3976 | 0.020* | |
C21 | 0.76223 (10) | 0.69196 (12) | 0.42790 (6) | 0.0175 (3) | |
H21A | 0.7703 | 0.7832 | 0.4288 | 0.021* | |
C22 | 0.84182 (10) | 0.61043 (13) | 0.44488 (7) | 0.0184 (3) | |
H22A | 0.9052 | 0.6459 | 0.4577 | 0.022* | |
C23 | 0.82928 (9) | 0.47688 (12) | 0.44329 (6) | 0.0158 (3) | |
H23A | 0.8850 | 0.4231 | 0.4551 | 0.019* | |
C24 | 0.71533 (9) | 0.24075 (11) | 0.50776 (6) | 0.0123 (3) | |
C25 | 0.62668 (9) | 0.24171 (12) | 0.52421 (7) | 0.0152 (3) | |
H25A | 0.5687 | 0.2474 | 0.4888 | 0.018* | |
C26 | 0.62008 (10) | 0.23463 (12) | 0.59031 (7) | 0.0193 (3) | |
H26A | 0.5584 | 0.2343 | 0.5990 | 0.023* | |
C27 | 0.70307 (11) | 0.22805 (13) | 0.64337 (7) | 0.0215 (3) | |
H27A | 0.6989 | 0.2225 | 0.6885 | 0.026* | |
C28 | 0.79239 (10) | 0.22970 (13) | 0.62940 (7) | 0.0201 (3) | |
H28A | 0.8500 | 0.2269 | 0.6652 | 0.024* | |
C29 | 0.79771 (10) | 0.23546 (12) | 0.56298 (6) | 0.0158 (3) | |
H29A | 0.8597 | 0.2358 | 0.5547 | 0.019* | |
C30 | 0.81220 (8) | 0.17917 (12) | 0.41432 (6) | 0.0126 (3) | |
C31 | 0.84580 (9) | 0.06116 (12) | 0.44527 (7) | 0.0161 (3) | |
H31A | 0.8215 | 0.0319 | 0.4812 | 0.019* | |
C32 | 0.91335 (9) | −0.01510 (13) | 0.42549 (7) | 0.0198 (3) | |
H32A | 0.9350 | −0.0938 | 0.4484 | 0.024* | |
C33 | 0.94894 (9) | 0.02374 (13) | 0.37262 (7) | 0.0217 (3) | |
H33A | 0.9941 | −0.0285 | 0.3583 | 0.026* | |
C34 | 0.91763 (9) | 0.14018 (14) | 0.34078 (7) | 0.0201 (3) | |
H34A | 0.9418 | 0.1683 | 0.3046 | 0.024* | |
C35 | 0.85121 (9) | 0.21571 (13) | 0.36156 (6) | 0.0158 (3) | |
H35A | 0.8313 | 0.2954 | 0.3392 | 0.019* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0109 (6) | 0.0104 (6) | 0.0133 (6) | 0.0025 (5) | 0.0037 (5) | 0.0003 (5) |
N1 | 0.0139 (5) | 0.0132 (5) | 0.0138 (5) | −0.0011 (4) | 0.0025 (4) | 0.0033 (4) |
C2 | 0.0178 (6) | 0.0163 (6) | 0.0195 (7) | −0.0016 (5) | 0.0071 (5) | 0.0022 (5) |
C3 | 0.0208 (7) | 0.0149 (6) | 0.0146 (6) | 0.0026 (5) | 0.0021 (5) | 0.0031 (5) |
N2 | 0.0155 (5) | 0.0122 (5) | 0.0115 (5) | −0.0021 (4) | 0.0040 (4) | −0.0007 (4) |
C4 | 0.0224 (7) | 0.0155 (6) | 0.0139 (6) | −0.0024 (5) | 0.0039 (5) | −0.0038 (5) |
C5 | 0.0168 (6) | 0.0133 (6) | 0.0164 (6) | −0.0025 (5) | 0.0066 (5) | 0.0002 (5) |
C6 | 0.0183 (6) | 0.0143 (6) | 0.0172 (6) | −0.0007 (5) | 0.0065 (5) | 0.0035 (5) |
C7 | 0.0229 (7) | 0.0176 (7) | 0.0116 (6) | −0.0019 (5) | 0.0030 (5) | 0.0027 (5) |
N3 | 0.0160 (5) | 0.0109 (5) | 0.0115 (5) | −0.0011 (4) | 0.0027 (4) | −0.0005 (4) |
C8 | 0.0163 (6) | 0.0119 (6) | 0.0150 (6) | −0.0011 (5) | 0.0034 (5) | −0.0032 (5) |
C9 | 0.0189 (6) | 0.0131 (6) | 0.0119 (6) | −0.0019 (5) | 0.0041 (5) | −0.0031 (5) |
O1 | 0.0177 (5) | 0.0153 (5) | 0.0266 (5) | 0.0016 (4) | 0.0041 (4) | −0.0034 (4) |
O2 | 0.0182 (5) | 0.0145 (5) | 0.0209 (5) | −0.0037 (4) | 0.0015 (4) | −0.0023 (4) |
C10 | 0.0180 (7) | 0.0197 (7) | 0.0228 (7) | −0.0063 (5) | 0.0070 (5) | −0.0031 (6) |
C11 | 0.0200 (7) | 0.0246 (7) | 0.0226 (7) | −0.0001 (6) | 0.0032 (6) | −0.0010 (6) |
B1 | 0.0146 (7) | 0.0124 (7) | 0.0094 (7) | −0.0008 (5) | 0.0033 (5) | 0.0003 (5) |
C12 | 0.0124 (6) | 0.0109 (6) | 0.0130 (6) | 0.0014 (5) | 0.0050 (5) | −0.0020 (5) |
C13 | 0.0202 (7) | 0.0147 (6) | 0.0126 (6) | −0.0012 (5) | 0.0044 (5) | 0.0008 (5) |
C14 | 0.0197 (7) | 0.0151 (6) | 0.0210 (7) | −0.0062 (5) | 0.0083 (5) | −0.0046 (5) |
C15 | 0.0127 (6) | 0.0186 (7) | 0.0165 (6) | 0.0001 (5) | 0.0026 (5) | −0.0074 (5) |
C16 | 0.0178 (6) | 0.0158 (6) | 0.0115 (6) | 0.0037 (5) | 0.0036 (5) | −0.0006 (5) |
C17 | 0.0151 (6) | 0.0107 (6) | 0.0145 (6) | 0.0005 (5) | 0.0055 (5) | −0.0011 (5) |
C18 | 0.0180 (6) | 0.0132 (6) | 0.0069 (6) | −0.0009 (5) | 0.0040 (5) | −0.0002 (5) |
C19 | 0.0165 (6) | 0.0156 (6) | 0.0103 (6) | −0.0015 (5) | 0.0033 (5) | −0.0014 (5) |
C20 | 0.0227 (7) | 0.0149 (6) | 0.0114 (6) | 0.0041 (5) | 0.0036 (5) | 0.0002 (5) |
C21 | 0.0308 (7) | 0.0115 (6) | 0.0107 (6) | −0.0032 (5) | 0.0066 (5) | −0.0003 (5) |
C22 | 0.0198 (7) | 0.0185 (7) | 0.0174 (7) | −0.0065 (5) | 0.0059 (5) | −0.0013 (5) |
C23 | 0.0172 (6) | 0.0145 (6) | 0.0154 (6) | −0.0004 (5) | 0.0038 (5) | −0.0001 (5) |
C24 | 0.0182 (6) | 0.0062 (5) | 0.0129 (6) | −0.0008 (5) | 0.0049 (5) | −0.0005 (5) |
C25 | 0.0192 (6) | 0.0103 (6) | 0.0172 (6) | −0.0018 (5) | 0.0068 (5) | −0.0009 (5) |
C26 | 0.0273 (7) | 0.0120 (6) | 0.0237 (7) | −0.0019 (5) | 0.0157 (6) | −0.0006 (5) |
C27 | 0.0407 (8) | 0.0136 (6) | 0.0133 (6) | 0.0003 (6) | 0.0127 (6) | 0.0000 (5) |
C28 | 0.0299 (8) | 0.0149 (6) | 0.0129 (6) | 0.0007 (6) | 0.0013 (5) | −0.0009 (5) |
C29 | 0.0187 (6) | 0.0133 (6) | 0.0152 (6) | −0.0012 (5) | 0.0044 (5) | −0.0004 (5) |
C30 | 0.0116 (6) | 0.0133 (6) | 0.0122 (6) | −0.0039 (5) | 0.0017 (5) | −0.0042 (5) |
C31 | 0.0164 (6) | 0.0149 (6) | 0.0167 (7) | −0.0018 (5) | 0.0038 (5) | −0.0013 (5) |
C32 | 0.0162 (6) | 0.0143 (6) | 0.0265 (7) | 0.0004 (5) | 0.0017 (5) | −0.0036 (6) |
C33 | 0.0123 (6) | 0.0207 (7) | 0.0325 (8) | −0.0017 (5) | 0.0066 (6) | −0.0124 (6) |
C34 | 0.0169 (7) | 0.0242 (7) | 0.0219 (7) | −0.0063 (6) | 0.0098 (5) | −0.0071 (6) |
C35 | 0.0159 (6) | 0.0154 (6) | 0.0162 (6) | −0.0036 (5) | 0.0044 (5) | −0.0031 (5) |
C1—N2 | 1.3335 (16) | C12—C13 | 1.4047 (17) |
C1—N3 | 1.3427 (16) | C13—C14 | 1.3921 (18) |
C1—N1 | 1.3552 (16) | C13—H13A | 0.9500 |
N1—C2 | 1.4584 (16) | C14—C15 | 1.3851 (19) |
N1—C3 | 1.4604 (16) | C14—H14A | 0.9500 |
C2—H2A | 0.9800 | C15—C16 | 1.3886 (18) |
C2—H2B | 0.9800 | C15—H15A | 0.9500 |
C2—H2C | 0.9800 | C16—C17 | 1.3914 (17) |
C3—H3A | 0.9800 | C16—H16A | 0.9500 |
C3—H3B | 0.9800 | C17—H17A | 0.9500 |
C3—H3C | 0.9800 | C18—C19 | 1.4005 (18) |
N2—C4 | 1.4672 (16) | C18—C23 | 1.4040 (18) |
N2—C5 | 1.4732 (16) | C19—C20 | 1.3923 (18) |
C4—H4A | 0.9800 | C19—H19A | 0.9500 |
C4—H4B | 0.9800 | C20—C21 | 1.3872 (19) |
C4—H4C | 0.9800 | C20—H20A | 0.9500 |
C5—C6 | 1.5123 (18) | C21—C22 | 1.3869 (19) |
C5—H5A | 0.9900 | C21—H21A | 0.9500 |
C5—H5B | 0.9900 | C22—C23 | 1.3916 (18) |
C6—C7 | 1.5091 (18) | C22—H22A | 0.9500 |
C6—H6A | 0.9900 | C23—H23A | 0.9500 |
C6—H6B | 0.9900 | C24—C25 | 1.4028 (18) |
C7—N3 | 1.4779 (16) | C24—C29 | 1.4052 (18) |
C7—H7A | 0.9900 | C25—C26 | 1.3940 (19) |
C7—H7B | 0.9900 | C25—H25A | 0.9500 |
N3—C8 | 1.4592 (15) | C26—C27 | 1.386 (2) |
C8—C9 | 1.5231 (18) | C26—H26A | 0.9500 |
C8—H8A | 0.9900 | C27—C28 | 1.388 (2) |
C8—H8B | 0.9900 | C27—H27A | 0.9500 |
C9—O1 | 1.2058 (16) | C28—C29 | 1.3939 (19) |
C9—O2 | 1.3326 (15) | C28—H28A | 0.9500 |
O2—C10 | 1.4669 (16) | C29—H29A | 0.9500 |
C10—C11 | 1.5017 (19) | C30—C31 | 1.4010 (18) |
C10—H10A | 0.9900 | C30—C35 | 1.4033 (18) |
C10—H10B | 0.9900 | C31—C32 | 1.3934 (19) |
C11—H11A | 0.9800 | C31—H31A | 0.9500 |
C11—H11B | 0.9800 | C32—C33 | 1.383 (2) |
C11—H11C | 0.9800 | C32—H32A | 0.9500 |
B1—C30 | 1.6383 (18) | C33—C34 | 1.387 (2) |
B1—C24 | 1.6422 (18) | C33—H33A | 0.9500 |
B1—C12 | 1.6436 (18) | C34—C35 | 1.3868 (19) |
B1—C18 | 1.6449 (18) | C34—H34A | 0.9500 |
C12—C17 | 1.4023 (17) | C35—H35A | 0.9500 |
N2—C1—N3 | 120.28 (11) | C24—B1—C18 | 103.73 (10) |
N2—C1—N1 | 119.95 (11) | C12—B1—C18 | 112.05 (10) |
N3—C1—N1 | 119.77 (11) | C17—C12—C13 | 115.10 (11) |
C1—N1—C2 | 122.14 (10) | C17—C12—B1 | 121.63 (11) |
C1—N1—C3 | 121.58 (10) | C13—C12—B1 | 122.81 (11) |
C2—N1—C3 | 115.99 (10) | C14—C13—C12 | 122.71 (12) |
N1—C2—H2A | 109.5 | C14—C13—H13A | 118.6 |
N1—C2—H2B | 109.5 | C12—C13—H13A | 118.6 |
H2A—C2—H2B | 109.5 | C15—C14—C13 | 120.37 (12) |
N1—C2—H2C | 109.5 | C15—C14—H14A | 119.8 |
H2A—C2—H2C | 109.5 | C13—C14—H14A | 119.8 |
H2B—C2—H2C | 109.5 | C14—C15—C16 | 118.71 (12) |
N1—C3—H3A | 109.5 | C14—C15—H15A | 120.6 |
N1—C3—H3B | 109.5 | C16—C15—H15A | 120.6 |
H3A—C3—H3B | 109.5 | C15—C16—C17 | 120.19 (12) |
N1—C3—H3C | 109.5 | C15—C16—H16A | 119.9 |
H3A—C3—H3C | 109.5 | C17—C16—H16A | 119.9 |
H3B—C3—H3C | 109.5 | C16—C17—C12 | 122.90 (12) |
C1—N2—C4 | 121.38 (11) | C16—C17—H17A | 118.5 |
C1—N2—C5 | 119.05 (10) | C12—C17—H17A | 118.5 |
C4—N2—C5 | 116.61 (10) | C19—C18—C23 | 115.32 (11) |
N2—C4—H4A | 109.5 | C19—C18—B1 | 122.21 (11) |
N2—C4—H4B | 109.5 | C23—C18—B1 | 122.14 (11) |
H4A—C4—H4B | 109.5 | C20—C19—C18 | 122.69 (12) |
N2—C4—H4C | 109.5 | C20—C19—H19A | 118.7 |
H4A—C4—H4C | 109.5 | C18—C19—H19A | 118.7 |
H4B—C4—H4C | 109.5 | C21—C20—C19 | 120.34 (12) |
N2—C5—C6 | 107.98 (10) | C21—C20—H20A | 119.8 |
N2—C5—H5A | 110.1 | C19—C20—H20A | 119.8 |
C6—C5—H5A | 110.1 | C22—C21—C20 | 118.68 (12) |
N2—C5—H5B | 110.1 | C22—C21—H21A | 120.7 |
C6—C5—H5B | 110.1 | C20—C21—H21A | 120.7 |
H5A—C5—H5B | 108.4 | C21—C22—C23 | 120.29 (12) |
C7—C6—C5 | 107.87 (10) | C21—C22—H22A | 119.9 |
C7—C6—H6A | 110.1 | C23—C22—H22A | 119.9 |
C5—C6—H6A | 110.1 | C22—C23—C18 | 122.68 (12) |
C7—C6—H6B | 110.1 | C22—C23—H23A | 118.7 |
C5—C6—H6B | 110.1 | C18—C23—H23A | 118.7 |
H6A—C6—H6B | 108.4 | C25—C24—C29 | 115.13 (12) |
N3—C7—C6 | 111.95 (10) | C25—C24—B1 | 122.68 (11) |
N3—C7—H7A | 109.2 | C29—C24—B1 | 121.83 (11) |
C6—C7—H7A | 109.2 | C26—C25—C24 | 122.77 (12) |
N3—C7—H7B | 109.2 | C26—C25—H25A | 118.6 |
C6—C7—H7B | 109.2 | C24—C25—H25A | 118.6 |
H7A—C7—H7B | 107.9 | C27—C26—C25 | 120.33 (13) |
C1—N3—C8 | 121.44 (10) | C27—C26—H26A | 119.8 |
C1—N3—C7 | 122.99 (10) | C25—C26—H26A | 119.8 |
C8—N3—C7 | 114.86 (10) | C26—C27—C28 | 118.76 (12) |
N3—C8—C9 | 112.35 (10) | C26—C27—H27A | 120.6 |
N3—C8—H8A | 109.1 | C28—C27—H27A | 120.6 |
C9—C8—H8A | 109.1 | C27—C28—C29 | 120.18 (13) |
N3—C8—H8B | 109.1 | C27—C28—H28A | 119.9 |
C9—C8—H8B | 109.1 | C29—C28—H28A | 119.9 |
H8A—C8—H8B | 107.9 | C28—C29—C24 | 122.80 (13) |
O1—C9—O2 | 125.47 (12) | C28—C29—H29A | 118.6 |
O1—C9—C8 | 124.41 (11) | C24—C29—H29A | 118.6 |
O2—C9—C8 | 110.12 (10) | C31—C30—C35 | 115.31 (12) |
C9—O2—C10 | 116.21 (10) | C31—C30—B1 | 123.30 (11) |
O2—C10—C11 | 110.74 (11) | C35—C30—B1 | 120.91 (11) |
O2—C10—H10A | 109.5 | C32—C31—C30 | 122.73 (13) |
C11—C10—H10A | 109.5 | C32—C31—H31A | 118.6 |
O2—C10—H10B | 109.5 | C30—C31—H31A | 118.6 |
C11—C10—H10B | 109.5 | C33—C32—C31 | 120.05 (13) |
H10A—C10—H10B | 108.1 | C33—C32—H32A | 120.0 |
C10—C11—H11A | 109.5 | C31—C32—H32A | 120.0 |
C10—C11—H11B | 109.5 | C32—C33—C34 | 118.95 (13) |
H11A—C11—H11B | 109.5 | C32—C33—H33A | 120.5 |
C10—C11—H11C | 109.5 | C34—C33—H33A | 120.5 |
H11A—C11—H11C | 109.5 | C35—C34—C33 | 120.29 (13) |
H11B—C11—H11C | 109.5 | C35—C34—H34A | 119.9 |
C30—B1—C24 | 113.19 (10) | C33—C34—H34A | 119.9 |
C30—B1—C12 | 102.64 (10) | C34—C35—C30 | 122.65 (12) |
C24—B1—C12 | 113.30 (10) | C34—C35—H35A | 118.7 |
C30—B1—C18 | 112.26 (10) | C30—C35—H35A | 118.7 |
N2—C1—N1—C2 | 131.82 (12) | C12—B1—C18—C19 | 37.60 (16) |
N3—C1—N1—C2 | −48.86 (17) | C30—B1—C18—C23 | −34.35 (16) |
N2—C1—N1—C3 | −41.71 (17) | C24—B1—C18—C23 | 88.19 (13) |
N3—C1—N1—C3 | 137.61 (12) | C12—B1—C18—C23 | −149.24 (11) |
N3—C1—N2—C4 | 151.00 (12) | C23—C18—C19—C20 | 0.44 (18) |
N1—C1—N2—C4 | −29.68 (17) | B1—C18—C19—C20 | 174.04 (12) |
N3—C1—N2—C5 | −8.90 (17) | C18—C19—C20—C21 | −0.5 (2) |
N1—C1—N2—C5 | 170.42 (11) | C19—C20—C21—C22 | 0.17 (19) |
C1—N2—C5—C6 | 46.02 (15) | C20—C21—C22—C23 | 0.09 (19) |
C4—N2—C5—C6 | −114.81 (12) | C21—C22—C23—C18 | −0.1 (2) |
N2—C5—C6—C7 | −61.58 (13) | C19—C18—C23—C22 | −0.17 (18) |
C5—C6—C7—N3 | 43.84 (15) | B1—C18—C23—C22 | −173.77 (12) |
N2—C1—N3—C8 | 158.29 (11) | C30—B1—C24—C25 | −146.70 (11) |
N1—C1—N3—C8 | −21.04 (17) | C12—B1—C24—C25 | −30.36 (16) |
N2—C1—N3—C7 | −11.55 (18) | C18—B1—C24—C25 | 91.38 (13) |
N1—C1—N3—C7 | 169.12 (11) | C30—B1—C24—C29 | 40.54 (16) |
C6—C7—N3—C1 | −8.01 (17) | C12—B1—C24—C29 | 156.87 (11) |
C6—C7—N3—C8 | −178.46 (11) | C18—B1—C24—C29 | −81.39 (13) |
C1—N3—C8—C9 | 108.96 (13) | C29—C24—C25—C26 | −1.56 (18) |
C7—N3—C8—C9 | −80.43 (13) | B1—C24—C25—C26 | −174.78 (11) |
N3—C8—C9—O1 | 17.68 (18) | C24—C25—C26—C27 | 0.92 (19) |
N3—C8—C9—O2 | −162.04 (10) | C25—C26—C27—C28 | 0.51 (19) |
O1—C9—O2—C10 | 1.81 (19) | C26—C27—C28—C29 | −1.2 (2) |
C8—C9—O2—C10 | −178.48 (10) | C27—C28—C29—C24 | 0.5 (2) |
C9—O2—C10—C11 | 88.51 (14) | C25—C24—C29—C28 | 0.87 (18) |
C30—B1—C12—C17 | −84.93 (13) | B1—C24—C29—C28 | 174.15 (11) |
C24—B1—C12—C17 | 152.66 (11) | C24—B1—C30—C31 | 30.10 (16) |
C18—B1—C12—C17 | 35.71 (16) | C12—B1—C30—C31 | −92.38 (13) |
C30—B1—C12—C13 | 86.92 (14) | C18—B1—C30—C31 | 147.12 (11) |
C24—B1—C12—C13 | −35.48 (16) | C24—B1—C30—C35 | −158.21 (11) |
C18—B1—C12—C13 | −152.44 (11) | C12—B1—C30—C35 | 79.31 (13) |
C17—C12—C13—C14 | −1.62 (18) | C18—B1—C30—C35 | −41.18 (15) |
B1—C12—C13—C14 | −173.97 (12) | C35—C30—C31—C32 | 0.13 (18) |
C12—C13—C14—C15 | 1.1 (2) | B1—C30—C31—C32 | 172.25 (12) |
C13—C14—C15—C16 | 0.21 (19) | C30—C31—C32—C33 | −1.0 (2) |
C14—C15—C16—C17 | −0.78 (19) | C31—C32—C33—C34 | 1.1 (2) |
C15—C16—C17—C12 | 0.13 (19) | C32—C33—C34—C35 | −0.39 (19) |
C13—C12—C17—C16 | 1.04 (18) | C33—C34—C35—C30 | −0.5 (2) |
B1—C12—C17—C16 | 173.48 (11) | C31—C30—C35—C34 | 0.65 (18) |
C30—B1—C18—C19 | 152.49 (11) | B1—C30—C35—C34 | −171.68 (12) |
C24—B1—C18—C19 | −84.97 (13) |
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10B···O1i | 0.99 | 2.44 | 3.397 (2) | 163 |
Symmetry code: (i) −x, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C11H22N3O2+·C24H20B− |
Mr | 547.53 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 14.3582 (5), 10.3377 (3), 20.6302 (9) |
β (°) | 105.615 (1) |
V (Å3) | 2949.14 (19) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.23 × 0.16 × 0.13 |
Data collection | |
Diffractometer | Bruker–Nonius Kappa CCD |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13034, 6747, 5041 |
Rint | 0.035 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.097, 1.02 |
No. of reflections | 6747 |
No. of parameters | 374 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.30, −0.21 |
Computer programs: COLLECT (Hooft, 2004), HKL SCALEPACK (Otwinowski & Minor, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), DIAMOND (Brandenburg & Putz, 2005).
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10B···O1i | 0.99 | 2.44 | 3.397 (2) | 163 |
Symmetry code: (i) −x, y−1/2, −z+1/2. |
Acknowledgements
The authors thank Dr Falk Lissner (Institut für Anorganische Chemie, Universität Stuttgart) for the data collection.
References
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Tetrahydropyrimidine derivatives very often show pharmacologic activity. Prominent members are the cyclic amidines oxantel (Kraouti et al., 1993) and pyrantel (Kraouti et al., 1995), which are showing an anthelmintic effect against intestinal nematode infestations in humans and animals. 1-Methyl-2-dimethylamino-1,4,5,6-tetrahydropyrimidine (Tiritiris & Kantlehner, 2012), a cyclic guanidine derivative synthesized by us recently, could be used as a new candidate for preparing potentially pharmacologically active compounds in this field. By alkylation of the free nitrogen of the guanidine base, various cyclic guanidinium salts have been obtained and characterised (Tiritiris & Kantlehner, 2012). One of them, is the here presented title compound (Fig. 1). In the crystal structure of the salt,
isolated cations and anions are present. No specific interactions between the guanidinium ions and the tetraphenylborate ions have been observed. Prominent bond parameters in the guanidinium ion are: C1–N1 = 1.355 (2) Å, C1–N2 = 1.334 (2) Å and C1–N3 = 1.343 (2) Å. The N–C1–N angles are: 120.0 (1)° (N1–C1–N2), 120.3 (1)° (N2–C1–N3) and 119.8 (1)° (N1–C1–N3), which indicates a nearly ideal trigonal-planar surrounding of the carbon centre by the nitrogen atoms. The positive charge is completely delocalized on the CN3 plane. Bond lengths between carbon and oxygen atoms in the ethoxycarbonylmethyl group are: C9–O1 = 1.206 (2) Å, C9–O2 = 1.333 (2) Å and C10–O2 = 1.467 (2) Å. The six membered ring is non planar (Fig. 1). The carbon atom C6 is not in the ring plane, the angle between the planes N3/C1/N2 and C5/C6/C7 is 49.9 (1)°. Finally, weak C–H···O hydrogen bonds between methylene hydrogen atoms and carbonyl oxygen atoms of neighbouring guanidinium ions have been determined [d(H···O) = 2.44 Å] (Tab. 1). The cations are connected by C–H···O hydrogen bonds, generating a chain (Fig. 2). The anions are packed inbetween these chains using van der Waals interactions, only.