organic compounds
11-[(E)-2-Fluorobenzylidene]-8-(2-fluorophenyl)-14-hydroxy-6-thia-3,13-diazaheptacyclo[13.7.1.19,13.02,9.02,14.03,7.019,23]tetracosa-1(22),15(23),16,18,20-pentaen-10-one
aSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bDepartment of Chemistry, College of Sciences, King Saud University, PO Box 2455, Riyadh 11451, Saudi Arabia, and cSchool of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: arazaki@usm.my
In the title compound, C34H26F2N2O2S, an intramolecular O—H⋯N hydrogen bond forms an S(5) ring motif. The piperidine ring adopts a chair conformation. The thiazolidine ring and one of the pyrrolidine rings adopt envolope conformations with methylene C atoms at the flap, whereas the other pyrrolidine ring adopts a half-chair conformation. The fluoro-substituted benzene rings form dihedral angles of 32.25 (10) and 38.27 (10)°, respectively, with the mean plane of the dihydroacenaphthylene ring system [maximum deviation = 0.043 (2) Å]. The dihedral angle between the fluoro-substituted benzene rings is 64.13 (14)°. In the crystal, molecules are linked by weak C—H⋯O, C—H⋯F and C—H⋯S hydrogen bonds into a three-dimensional network.
Related literature
For general background to the applications of nitrogen heterocycles, see: Orru & de Greef (2003); Kirsch et al. (2004); Padwa (1984); For related structures, see: Kumar et al. (2010a,b, 2011a,b). For ring conformations, see: Cremer & Pople (1975). For hydrogen-bond motifs, see: Bernstein et al. (1995). For stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536812025512/lh5479sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812025512/lh5479Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536812025512/lh5479Isup3.cml
A mixture of 3,5-bis[(E)-(2-fluorophenyl) methylidene]-tetrahydro-4(1H)-pyridinone (1 mmol), acenaphthenequinone (1 mmol), and thiazolidine-2-carboxylic acid (1 mmol) were dissolved in methanol (5 ml) and refluxed for 1 h. After completion of the reaction as evident from TLC, the mixture was poured into water (50 ml). The precipitated solid was filtered and washed with water (200 mL) and recrystallized from ethyl acetate to give the title compound as colourless crystals.
The O-bound H atom was located from the difference map and refined freely, [O–H = 0.89 (4) Å]. The remaining H atoms were positioned geometrically [C–H = 0.93 and 0.98 Å] and refined using a riding model with Uiso(H) = 1.2 Ueq(C).
The development of new efficient methods to synthesize nitrogen heterocycles with structural diversity is one of the major objectives of modern synthetic organic chemists as these heterocycles are widely prevalent in nature and play a pivotal role in the pharmaceutical and drug industry (Orru & de Greef, 2003; Kirsch et al., 2004). 1,3-Dipolar
of is a versatile protocol for the construction of highly functionalized N-heterocycles (Padwa, 1984). As a continuation of our research program (Kumar et al., 2010a,b; Kumar et al., 2011a,b), we report the X-ray determination of the title compound.The molecular structure is shown in Fig. 1. The bond lengths and angles are within normal ranges and comparable to related structures (Kumar et al., 2010a,b; Kumar et al., 2011a,b). An intramolecular O1—H1O1···N1 hydrogen bond (Table 1) forms an S(5) ring motif (Bernstein et al., 1995). The piperidine ring (N2/C17–C21) adopts a chair conformation with puckering parameters (Cremer & Pople, 1975), Q= 0.6115 (19) Å, Θ= 142.58 (18)° and Φ= 236.7 (3)°. For the thiazolidine ring, S1/N1/C13–C15 adopts an with atom C14 on the flap with puckering parameters Q= 0.4212 (19) Å and φ= 209.8 (3)°. The two pyrrolidine rings adopt different conformations, N1/C12/C15–C17 is twisted about C16–C17 bond [puckering parameters, Q= 0.3857 (19) Å and φ= 273.7 (3)°], hence adopting a half-chair conformation. Meanwhile, the N2/C11/C12/C17/C18 ring is in with atom C18 at the flap [puckering parameters Q= 0.4598 (19) Å and φ= 148.3 (2)°]. The fluoro-substituted benzene rings (C23–C28 & C29–C34) form dihedral angles of 32.25 (10) and 38.27 (10)°, respectively, with the mean plane of the dihydroacenaphthylene ring system [C2–C12, maximum deviation of 0.043 (2) Å at atom C11]. The dihedral angle between the fluoro substituted benzene rings is 64.13 (14)°.
In the crystal packing (Fig. 2), the molecules are linked into three dimensional network via intermolecular C14—H14A···O2i, C22—H22A···F1ii and C25—H25A···S1iii (Table 1) hydrogen bonds.
For general background to the applications of nitrogen heterocycles, see: Orru & de Greef (2003); Kirsch et al. (2004); Padwa (1984); For related structures, see: Kumar et al. (2010a,b, 2011a,b). For ring conformations, see: Cremer & Pople (1975). For hydrogen-bond motifs, see: Bernstein et al. (1995). For stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C34H26F2N2O2S | F(000) = 1176 |
Mr = 564.63 | Dx = 1.371 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 4640 reflections |
a = 11.1783 (10) Å | θ = 2.5–22.5° |
b = 16.1033 (14) Å | µ = 0.17 mm−1 |
c = 15.2165 (13) Å | T = 296 K |
β = 92.838 (2)° | Block, colourless |
V = 2735.7 (4) Å3 | 0.40 × 0.26 × 0.15 mm |
Z = 4 |
Bruker SMART APEXII DUO CCD area-detector diffractometer | 7981 independent reflections |
Radiation source: fine-focus sealed tube | 4714 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.048 |
φ and ω scans | θmax = 30.1°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −15→15 |
Tmin = 0.936, Tmax = 0.976 | k = −22→20 |
30643 measured reflections | l = −21→21 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.054 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.173 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0842P)2 + 0.2935P] where P = (Fo2 + 2Fc2)/3 |
7981 reflections | (Δ/σ)max < 0.001 |
374 parameters | Δρmax = 0.44 e Å−3 |
0 restraints | Δρmin = −0.37 e Å−3 |
C34H26F2N2O2S | V = 2735.7 (4) Å3 |
Mr = 564.63 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.1783 (10) Å | µ = 0.17 mm−1 |
b = 16.1033 (14) Å | T = 296 K |
c = 15.2165 (13) Å | 0.40 × 0.26 × 0.15 mm |
β = 92.838 (2)° |
Bruker SMART APEXII DUO CCD area-detector diffractometer | 7981 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 4714 reflections with I > 2σ(I) |
Tmin = 0.936, Tmax = 0.976 | Rint = 0.048 |
30643 measured reflections |
R[F2 > 2σ(F2)] = 0.054 | 0 restraints |
wR(F2) = 0.173 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.44 e Å−3 |
7981 reflections | Δρmin = −0.37 e Å−3 |
374 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.64031 (5) | 0.09464 (4) | 0.28495 (4) | 0.05918 (19) | |
F1 | 1.15043 (16) | 0.49435 (9) | 0.45961 (12) | 0.0838 (5) | |
F2 | 0.55699 (14) | 0.25610 (10) | 0.49142 (12) | 0.0797 (5) | |
O1 | 1.09128 (14) | 0.06644 (8) | 0.36084 (10) | 0.0454 (3) | |
O2 | 0.82349 (13) | 0.30813 (9) | 0.52734 (9) | 0.0478 (4) | |
N1 | 0.87293 (14) | 0.12106 (9) | 0.32117 (9) | 0.0339 (3) | |
N2 | 1.08274 (14) | 0.13270 (10) | 0.49723 (10) | 0.0370 (4) | |
C1 | 1.09271 (17) | 0.27529 (11) | 0.33216 (11) | 0.0352 (4) | |
C2 | 0.96866 (17) | 0.26464 (11) | 0.33643 (11) | 0.0330 (4) | |
C3 | 0.89385 (19) | 0.32817 (12) | 0.31060 (12) | 0.0432 (5) | |
H3A | 0.8115 | 0.3233 | 0.3153 | 0.052* | |
C4 | 0.9441 (2) | 0.40161 (13) | 0.27656 (14) | 0.0527 (6) | |
H4A | 0.8935 | 0.4447 | 0.2581 | 0.063* | |
C5 | 1.0638 (2) | 0.41076 (13) | 0.27015 (14) | 0.0542 (6) | |
H5A | 1.0932 | 0.4593 | 0.2462 | 0.065* | |
C6 | 1.1446 (2) | 0.34828 (13) | 0.29902 (13) | 0.0454 (5) | |
C7 | 1.2708 (2) | 0.34971 (17) | 0.30078 (16) | 0.0612 (6) | |
H7A | 1.3095 | 0.3960 | 0.2792 | 0.073* | |
C8 | 1.3370 (2) | 0.28475 (18) | 0.33346 (16) | 0.0635 (7) | |
H8A | 1.4201 | 0.2877 | 0.3333 | 0.076* | |
C9 | 1.28338 (19) | 0.21281 (15) | 0.36766 (14) | 0.0513 (5) | |
H9A | 1.3302 | 0.1692 | 0.3901 | 0.062* | |
C10 | 1.16086 (17) | 0.20875 (12) | 0.36704 (11) | 0.0375 (4) | |
C11 | 1.07658 (16) | 0.14415 (11) | 0.40053 (11) | 0.0330 (4) | |
C12 | 0.94494 (15) | 0.18013 (10) | 0.37635 (10) | 0.0292 (3) | |
C13 | 0.84768 (19) | 0.13879 (14) | 0.22702 (12) | 0.0436 (5) | |
H13A | 0.8637 | 0.0899 | 0.1923 | 0.052* | |
H13B | 0.8988 | 0.1834 | 0.2083 | 0.052* | |
C14 | 0.7179 (2) | 0.16348 (16) | 0.21350 (15) | 0.0573 (6) | |
H14A | 0.6901 | 0.1559 | 0.1526 | 0.069* | |
H14B | 0.7062 | 0.2210 | 0.2299 | 0.069* | |
C15 | 0.76423 (17) | 0.09699 (12) | 0.36640 (12) | 0.0380 (4) | |
H15A | 0.7755 | 0.0416 | 0.3921 | 0.046* | |
C16 | 0.75285 (16) | 0.16069 (11) | 0.44020 (11) | 0.0346 (4) | |
H16A | 0.7184 | 0.2112 | 0.4135 | 0.042* | |
C17 | 0.88387 (15) | 0.17909 (11) | 0.46585 (10) | 0.0301 (4) | |
C18 | 0.95895 (17) | 0.11177 (12) | 0.51626 (12) | 0.0366 (4) | |
H18A | 0.9472 | 0.1144 | 0.5789 | 0.044* | |
H18B | 0.9380 | 0.0566 | 0.4950 | 0.044* | |
C19 | 1.11878 (17) | 0.20648 (12) | 0.54978 (12) | 0.0392 (4) | |
H19A | 1.1967 | 0.2248 | 0.5322 | 0.047* | |
H19B | 1.1270 | 0.1906 | 0.6113 | 0.047* | |
C20 | 1.03218 (17) | 0.27870 (12) | 0.54077 (11) | 0.0371 (4) | |
C21 | 0.90487 (17) | 0.26048 (12) | 0.51384 (11) | 0.0350 (4) | |
C22 | 1.06286 (18) | 0.35928 (13) | 0.54605 (13) | 0.0428 (5) | |
H22A | 1.0018 | 0.3974 | 0.5340 | 0.051* | |
C23 | 1.18185 (19) | 0.39387 (13) | 0.56861 (13) | 0.0456 (5) | |
C24 | 1.2575 (2) | 0.36255 (17) | 0.63633 (16) | 0.0631 (7) | |
H24A | 1.2343 | 0.3161 | 0.6676 | 0.076* | |
C25 | 1.3663 (3) | 0.3997 (2) | 0.6574 (2) | 0.0813 (9) | |
H25A | 1.4165 | 0.3774 | 0.7019 | 0.098* | |
C26 | 1.4010 (3) | 0.4689 (2) | 0.6134 (2) | 0.0853 (9) | |
H26A | 1.4743 | 0.4937 | 0.6285 | 0.102* | |
C27 | 1.3281 (3) | 0.50214 (18) | 0.5467 (2) | 0.0789 (8) | |
H27A | 1.3509 | 0.5494 | 0.5166 | 0.095* | |
C28 | 1.2208 (2) | 0.46361 (15) | 0.52589 (16) | 0.0564 (6) | |
C29 | 0.67349 (17) | 0.13516 (13) | 0.51333 (13) | 0.0415 (4) | |
C30 | 0.6912 (2) | 0.06281 (15) | 0.56116 (15) | 0.0575 (6) | |
H30A | 0.7529 | 0.0272 | 0.5471 | 0.069* | |
C31 | 0.6191 (3) | 0.0420 (2) | 0.6296 (2) | 0.0868 (10) | |
H31A | 0.6332 | −0.0066 | 0.6615 | 0.104* | |
C32 | 0.5273 (3) | 0.0936 (2) | 0.6497 (3) | 0.1059 (13) | |
H32A | 0.4788 | 0.0797 | 0.6954 | 0.127* | |
C33 | 0.5057 (3) | 0.1652 (2) | 0.6035 (2) | 0.0877 (10) | |
H33A | 0.4429 | 0.2001 | 0.6169 | 0.105* | |
C34 | 0.5792 (2) | 0.18450 (16) | 0.53672 (17) | 0.0566 (6) | |
H1O1 | 1.022 (3) | 0.057 (2) | 0.331 (2) | 0.114 (12)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0464 (3) | 0.0822 (5) | 0.0480 (3) | −0.0191 (3) | −0.0063 (2) | −0.0016 (3) |
F1 | 0.0918 (12) | 0.0607 (10) | 0.0964 (12) | −0.0043 (8) | −0.0207 (10) | 0.0173 (8) |
F2 | 0.0590 (9) | 0.0718 (10) | 0.1096 (12) | 0.0249 (8) | 0.0175 (9) | 0.0149 (9) |
O1 | 0.0466 (8) | 0.0346 (8) | 0.0549 (8) | 0.0092 (6) | 0.0023 (7) | −0.0076 (6) |
O2 | 0.0421 (8) | 0.0472 (8) | 0.0545 (8) | 0.0072 (6) | 0.0058 (6) | −0.0144 (7) |
N1 | 0.0387 (8) | 0.0350 (8) | 0.0280 (7) | −0.0044 (6) | 0.0009 (6) | 0.0008 (6) |
N2 | 0.0370 (8) | 0.0394 (9) | 0.0342 (7) | 0.0033 (7) | −0.0008 (6) | 0.0068 (6) |
C1 | 0.0432 (10) | 0.0354 (10) | 0.0275 (8) | −0.0049 (8) | 0.0057 (7) | −0.0020 (7) |
C2 | 0.0434 (10) | 0.0292 (9) | 0.0266 (8) | −0.0018 (7) | 0.0039 (7) | 0.0020 (7) |
C3 | 0.0514 (12) | 0.0369 (11) | 0.0414 (10) | 0.0027 (9) | 0.0038 (9) | 0.0085 (8) |
C4 | 0.0733 (16) | 0.0354 (11) | 0.0492 (12) | 0.0010 (10) | 0.0016 (11) | 0.0115 (9) |
C5 | 0.0793 (17) | 0.0367 (11) | 0.0467 (12) | −0.0131 (11) | 0.0046 (11) | 0.0098 (9) |
C6 | 0.0571 (13) | 0.0440 (12) | 0.0357 (9) | −0.0151 (10) | 0.0083 (9) | 0.0009 (8) |
C7 | 0.0607 (15) | 0.0678 (16) | 0.0559 (13) | −0.0264 (13) | 0.0107 (11) | 0.0060 (12) |
C8 | 0.0410 (12) | 0.0873 (19) | 0.0629 (14) | −0.0206 (12) | 0.0098 (11) | −0.0020 (13) |
C9 | 0.0384 (11) | 0.0634 (15) | 0.0522 (12) | −0.0018 (10) | 0.0043 (9) | 0.0006 (11) |
C10 | 0.0374 (10) | 0.0438 (11) | 0.0315 (9) | −0.0038 (8) | 0.0050 (7) | −0.0025 (7) |
C11 | 0.0355 (9) | 0.0319 (9) | 0.0316 (8) | 0.0036 (7) | 0.0017 (7) | 0.0007 (7) |
C12 | 0.0337 (8) | 0.0270 (8) | 0.0270 (7) | 0.0004 (7) | 0.0014 (6) | 0.0022 (6) |
C13 | 0.0502 (12) | 0.0512 (12) | 0.0292 (9) | −0.0080 (9) | −0.0011 (8) | 0.0006 (8) |
C14 | 0.0569 (14) | 0.0693 (16) | 0.0444 (11) | −0.0056 (11) | −0.0116 (10) | 0.0096 (10) |
C15 | 0.0405 (10) | 0.0392 (11) | 0.0344 (9) | −0.0067 (8) | 0.0020 (7) | 0.0036 (7) |
C16 | 0.0358 (9) | 0.0340 (10) | 0.0341 (9) | 0.0019 (7) | 0.0031 (7) | 0.0052 (7) |
C17 | 0.0341 (9) | 0.0301 (9) | 0.0262 (7) | 0.0000 (7) | 0.0039 (6) | 0.0039 (6) |
C18 | 0.0403 (10) | 0.0376 (10) | 0.0319 (8) | 0.0018 (8) | 0.0028 (7) | 0.0079 (7) |
C19 | 0.0389 (10) | 0.0474 (11) | 0.0307 (8) | 0.0025 (8) | −0.0041 (7) | 0.0025 (8) |
C20 | 0.0404 (10) | 0.0449 (11) | 0.0258 (8) | 0.0005 (8) | 0.0011 (7) | −0.0039 (7) |
C21 | 0.0388 (10) | 0.0394 (10) | 0.0269 (8) | 0.0014 (8) | 0.0041 (7) | 0.0011 (7) |
C22 | 0.0426 (11) | 0.0453 (12) | 0.0404 (10) | 0.0005 (9) | 0.0003 (8) | −0.0070 (8) |
C23 | 0.0452 (11) | 0.0480 (12) | 0.0434 (10) | −0.0060 (9) | 0.0012 (9) | −0.0114 (9) |
C24 | 0.0610 (15) | 0.0730 (17) | 0.0539 (13) | −0.0129 (12) | −0.0128 (11) | −0.0041 (12) |
C25 | 0.0636 (17) | 0.104 (2) | 0.0739 (18) | −0.0186 (16) | −0.0236 (14) | −0.0036 (17) |
C26 | 0.0626 (17) | 0.100 (2) | 0.091 (2) | −0.0331 (17) | −0.0146 (16) | −0.0061 (19) |
C27 | 0.0731 (19) | 0.0684 (19) | 0.095 (2) | −0.0281 (15) | 0.0043 (16) | 0.0016 (16) |
C28 | 0.0554 (14) | 0.0524 (14) | 0.0607 (14) | −0.0041 (11) | −0.0029 (11) | −0.0030 (11) |
C29 | 0.0381 (10) | 0.0470 (12) | 0.0399 (10) | −0.0018 (8) | 0.0071 (8) | 0.0027 (8) |
C30 | 0.0569 (14) | 0.0564 (14) | 0.0612 (14) | 0.0016 (11) | 0.0240 (11) | 0.0149 (11) |
C31 | 0.099 (2) | 0.077 (2) | 0.089 (2) | 0.0018 (17) | 0.0536 (18) | 0.0274 (16) |
C32 | 0.110 (3) | 0.091 (2) | 0.125 (3) | −0.001 (2) | 0.085 (2) | 0.017 (2) |
C33 | 0.0672 (19) | 0.082 (2) | 0.119 (3) | 0.0062 (15) | 0.0536 (18) | −0.0048 (19) |
C34 | 0.0436 (12) | 0.0555 (14) | 0.0718 (15) | 0.0031 (10) | 0.0148 (11) | 0.0007 (12) |
S1—C14 | 1.804 (2) | C14—H14B | 0.9700 |
S1—C15 | 1.8129 (19) | C15—C16 | 1.531 (3) |
F1—C28 | 1.343 (3) | C15—H15A | 0.9800 |
F2—C34 | 1.360 (3) | C16—C29 | 1.514 (3) |
O1—C11 | 1.403 (2) | C16—C17 | 1.526 (2) |
O1—H1O1 | 0.89 (4) | C16—H16A | 0.9800 |
O2—C21 | 1.215 (2) | C17—C21 | 1.513 (2) |
N1—C13 | 1.474 (2) | C17—C18 | 1.550 (2) |
N1—C15 | 1.478 (2) | C18—H18A | 0.9700 |
N1—C12 | 1.480 (2) | C18—H18B | 0.9700 |
N2—C18 | 1.467 (2) | C19—C20 | 1.515 (3) |
N2—C19 | 1.477 (2) | C19—H19A | 0.9700 |
N2—C11 | 1.481 (2) | C19—H19B | 0.9700 |
C1—C2 | 1.402 (3) | C20—C22 | 1.344 (3) |
C1—C10 | 1.404 (3) | C20—C21 | 1.490 (3) |
C1—C6 | 1.414 (3) | C22—C23 | 1.467 (3) |
C2—C3 | 1.367 (3) | C22—H22A | 0.9300 |
C2—C12 | 1.519 (2) | C23—C28 | 1.379 (3) |
C3—C4 | 1.418 (3) | C23—C24 | 1.395 (3) |
C3—H3A | 0.9300 | C24—C25 | 1.379 (4) |
C4—C5 | 1.354 (4) | C24—H24A | 0.9300 |
C4—H4A | 0.9300 | C25—C26 | 1.367 (4) |
C5—C6 | 1.408 (3) | C25—H25A | 0.9300 |
C5—H5A | 0.9300 | C26—C27 | 1.377 (4) |
C6—C7 | 1.410 (3) | C26—H26A | 0.9300 |
C7—C8 | 1.362 (4) | C27—C28 | 1.373 (4) |
C7—H7A | 0.9300 | C27—H27A | 0.9300 |
C8—C9 | 1.415 (3) | C29—C34 | 1.381 (3) |
C8—H8A | 0.9300 | C29—C30 | 1.383 (3) |
C9—C10 | 1.371 (3) | C30—C31 | 1.390 (3) |
C9—H9A | 0.9300 | C30—H30A | 0.9300 |
C10—C11 | 1.509 (3) | C31—C32 | 1.367 (4) |
C11—C12 | 1.607 (2) | C31—H31A | 0.9300 |
C12—C17 | 1.553 (2) | C32—C33 | 1.366 (5) |
C13—C14 | 1.509 (3) | C32—H32A | 0.9300 |
C13—H13A | 0.9700 | C33—C34 | 1.373 (4) |
C13—H13B | 0.9700 | C33—H33A | 0.9300 |
C14—H14A | 0.9700 | ||
C14—S1—C15 | 91.46 (9) | C29—C16—C15 | 115.48 (16) |
C11—O1—H1O1 | 105 (2) | C17—C16—C15 | 101.78 (14) |
C13—N1—C15 | 112.40 (15) | C29—C16—H16A | 107.3 |
C13—N1—C12 | 119.96 (14) | C17—C16—H16A | 107.3 |
C15—N1—C12 | 109.94 (14) | C15—C16—H16A | 107.3 |
C18—N2—C19 | 108.21 (15) | C21—C17—C16 | 114.56 (15) |
C18—N2—C11 | 103.11 (14) | C21—C17—C18 | 107.44 (14) |
C19—N2—C11 | 115.84 (14) | C16—C17—C18 | 118.69 (15) |
C2—C1—C10 | 114.11 (16) | C21—C17—C12 | 110.44 (13) |
C2—C1—C6 | 122.82 (18) | C16—C17—C12 | 103.63 (13) |
C10—C1—C6 | 123.02 (19) | C18—C17—C12 | 101.00 (13) |
C3—C2—C1 | 119.18 (17) | N2—C18—C17 | 103.56 (14) |
C3—C2—C12 | 132.01 (18) | N2—C18—H18A | 111.0 |
C1—C2—C12 | 108.72 (15) | C17—C18—H18A | 111.0 |
C2—C3—C4 | 118.8 (2) | N2—C18—H18B | 111.0 |
C2—C3—H3A | 120.6 | C17—C18—H18B | 111.0 |
C4—C3—H3A | 120.6 | H18A—C18—H18B | 109.0 |
C5—C4—C3 | 121.9 (2) | N2—C19—C20 | 114.37 (15) |
C5—C4—H4A | 119.1 | N2—C19—H19A | 108.7 |
C3—C4—H4A | 119.1 | C20—C19—H19A | 108.7 |
C4—C5—C6 | 121.4 (2) | N2—C19—H19B | 108.7 |
C4—C5—H5A | 119.3 | C20—C19—H19B | 108.7 |
C6—C5—H5A | 119.3 | H19A—C19—H19B | 107.6 |
C5—C6—C7 | 128.3 (2) | C22—C20—C21 | 116.36 (17) |
C5—C6—C1 | 115.9 (2) | C22—C20—C19 | 125.17 (18) |
C7—C6—C1 | 115.7 (2) | C21—C20—C19 | 118.09 (17) |
C8—C7—C6 | 121.3 (2) | O2—C21—C20 | 122.80 (17) |
C8—C7—H7A | 119.3 | O2—C21—C17 | 121.94 (17) |
C6—C7—H7A | 119.3 | C20—C21—C17 | 115.24 (15) |
C7—C8—C9 | 122.0 (2) | C20—C22—C23 | 127.34 (19) |
C7—C8—H8A | 119.0 | C20—C22—H22A | 116.3 |
C9—C8—H8A | 119.0 | C23—C22—H22A | 116.3 |
C10—C9—C8 | 118.5 (2) | C28—C23—C24 | 116.6 (2) |
C10—C9—H9A | 120.7 | C28—C23—C22 | 120.2 (2) |
C8—C9—H9A | 120.7 | C24—C23—C22 | 123.0 (2) |
C9—C10—C1 | 119.31 (19) | C25—C24—C23 | 120.7 (3) |
C9—C10—C11 | 132.13 (19) | C25—C24—H24A | 119.7 |
C1—C10—C11 | 108.53 (16) | C23—C24—H24A | 119.6 |
O1—C11—N2 | 108.43 (14) | C26—C25—C24 | 120.6 (3) |
O1—C11—C10 | 112.41 (15) | C26—C25—H25A | 119.7 |
N2—C11—C10 | 114.97 (15) | C24—C25—H25A | 119.7 |
O1—C11—C12 | 110.40 (14) | C25—C26—C27 | 120.4 (3) |
N2—C11—C12 | 105.62 (13) | C25—C26—H26A | 119.8 |
C10—C11—C12 | 104.71 (14) | C27—C26—H26A | 119.8 |
N1—C12—C2 | 116.72 (13) | C28—C27—C26 | 118.2 (3) |
N1—C12—C17 | 103.90 (13) | C28—C27—H27A | 120.9 |
C2—C12—C17 | 116.96 (14) | C26—C27—H27A | 120.9 |
N1—C12—C11 | 111.35 (13) | F1—C28—C27 | 118.6 (2) |
C2—C12—C11 | 103.80 (14) | F1—C28—C23 | 117.8 (2) |
C17—C12—C11 | 103.44 (12) | C27—C28—C23 | 123.5 (2) |
N1—C13—C14 | 108.68 (17) | C34—C29—C30 | 116.12 (19) |
N1—C13—H13A | 110.0 | C34—C29—C16 | 121.05 (19) |
C14—C13—H13A | 110.0 | C30—C29—C16 | 122.82 (18) |
N1—C13—H13B | 110.0 | C29—C30—C31 | 121.7 (2) |
C14—C13—H13B | 110.0 | C29—C30—H30A | 119.2 |
H13A—C13—H13B | 108.3 | C31—C30—H30A | 119.2 |
C13—C14—S1 | 104.09 (15) | C32—C31—C30 | 119.4 (3) |
C13—C14—H14A | 110.9 | C32—C31—H31A | 120.3 |
S1—C14—H14A | 110.9 | C30—C31—H31A | 120.3 |
C13—C14—H14B | 110.9 | C33—C32—C31 | 120.9 (3) |
S1—C14—H14B | 110.9 | C33—C32—H32A | 119.6 |
H14A—C14—H14B | 109.0 | C31—C32—H32A | 119.6 |
N1—C15—C16 | 105.43 (14) | C32—C33—C34 | 118.4 (3) |
N1—C15—S1 | 107.77 (12) | C32—C33—H33A | 120.8 |
C16—C15—S1 | 115.29 (14) | C34—C33—H33A | 120.8 |
N1—C15—H15A | 109.4 | F2—C34—C33 | 117.8 (2) |
C16—C15—H15A | 109.4 | F2—C34—C29 | 118.7 (2) |
S1—C15—H15A | 109.4 | C33—C34—C29 | 123.5 (2) |
C29—C16—C17 | 117.04 (15) | ||
C10—C1—C2—C3 | 175.02 (17) | S1—C15—C16—C29 | 79.94 (18) |
C6—C1—C2—C3 | −2.4 (3) | N1—C15—C16—C17 | −33.48 (17) |
C10—C1—C2—C12 | −1.8 (2) | S1—C15—C16—C17 | −152.20 (12) |
C6—C1—C2—C12 | −179.23 (16) | C29—C16—C17—C21 | −73.8 (2) |
C1—C2—C3—C4 | 2.8 (3) | C15—C16—C17—C21 | 159.33 (14) |
C12—C2—C3—C4 | 178.72 (18) | C29—C16—C17—C18 | 54.9 (2) |
C2—C3—C4—C5 | −0.9 (3) | C15—C16—C17—C18 | −71.94 (18) |
C3—C4—C5—C6 | −1.5 (4) | C29—C16—C17—C12 | 165.79 (15) |
C4—C5—C6—C7 | −176.7 (2) | C15—C16—C17—C12 | 38.94 (16) |
C4—C5—C6—C1 | 1.9 (3) | N1—C12—C17—C21 | −153.45 (14) |
C2—C1—C6—C5 | 0.1 (3) | C2—C12—C17—C21 | −23.2 (2) |
C10—C1—C6—C5 | −177.13 (18) | C11—C12—C17—C21 | 90.14 (15) |
C2—C1—C6—C7 | 178.86 (18) | N1—C12—C17—C16 | −30.30 (16) |
C10—C1—C6—C7 | 1.7 (3) | C2—C12—C17—C16 | 99.91 (17) |
C5—C6—C7—C8 | 177.9 (2) | C11—C12—C17—C16 | −146.71 (14) |
C1—C6—C7—C8 | −0.7 (3) | N1—C12—C17—C18 | 93.09 (15) |
C6—C7—C8—C9 | −0.3 (4) | C2—C12—C17—C18 | −136.70 (15) |
C7—C8—C9—C10 | 0.4 (4) | C11—C12—C17—C18 | −23.32 (16) |
C8—C9—C10—C1 | 0.5 (3) | C19—N2—C18—C17 | 74.85 (16) |
C8—C9—C10—C11 | −177.5 (2) | C11—N2—C18—C17 | −48.36 (17) |
C2—C1—C10—C9 | −179.01 (18) | C21—C17—C18—N2 | −71.17 (17) |
C6—C1—C10—C9 | −1.6 (3) | C16—C17—C18—N2 | 156.89 (15) |
C2—C1—C10—C11 | −0.6 (2) | C12—C17—C18—N2 | 44.55 (16) |
C6—C1—C10—C11 | 176.83 (16) | C18—N2—C19—C20 | −51.43 (19) |
C18—N2—C11—O1 | −86.28 (16) | C11—N2—C19—C20 | 63.7 (2) |
C19—N2—C11—O1 | 155.72 (15) | N2—C19—C20—C22 | −148.31 (18) |
C18—N2—C11—C10 | 146.96 (15) | N2—C19—C20—C21 | 24.3 (2) |
C19—N2—C11—C10 | 29.0 (2) | C22—C20—C21—O2 | −27.3 (3) |
C18—N2—C11—C12 | 32.05 (17) | C19—C20—C21—O2 | 159.49 (17) |
C19—N2—C11—C12 | −85.94 (17) | C22—C20—C21—C17 | 151.05 (16) |
C9—C10—C11—O1 | −59.4 (3) | C19—C20—C21—C17 | −22.2 (2) |
C1—C10—C11—O1 | 122.42 (16) | C16—C17—C21—O2 | −2.7 (2) |
C9—C10—C11—N2 | 65.3 (3) | C18—C17—C21—O2 | −136.84 (18) |
C1—C10—C11—N2 | −112.88 (17) | C12—C17—C21—O2 | 113.86 (19) |
C9—C10—C11—C12 | −179.3 (2) | C16—C17—C21—C20 | 178.97 (14) |
C1—C10—C11—C12 | 2.55 (18) | C18—C17—C21—C20 | 44.81 (19) |
C13—N1—C12—C2 | 11.7 (2) | C12—C17—C21—C20 | −64.48 (18) |
C15—N1—C12—C2 | −120.95 (16) | C21—C20—C22—C23 | −178.31 (18) |
C13—N1—C12—C17 | 142.00 (16) | C19—C20—C22—C23 | −5.6 (3) |
C15—N1—C12—C17 | 9.40 (17) | C20—C22—C23—C28 | 141.7 (2) |
C13—N1—C12—C11 | −107.27 (18) | C20—C22—C23—C24 | −42.4 (3) |
C15—N1—C12—C11 | 120.13 (15) | C28—C23—C24—C25 | −1.0 (4) |
C3—C2—C12—N1 | 64.0 (3) | C22—C23—C24—C25 | −177.1 (2) |
C1—C2—C12—N1 | −119.72 (16) | C23—C24—C25—C26 | 1.3 (5) |
C3—C2—C12—C17 | −59.9 (3) | C24—C25—C26—C27 | −0.6 (5) |
C1—C2—C12—C17 | 116.38 (16) | C25—C26—C27—C28 | −0.3 (5) |
C3—C2—C12—C11 | −173.06 (19) | C26—C27—C28—F1 | −178.4 (3) |
C1—C2—C12—C11 | 3.20 (17) | C26—C27—C28—C23 | 0.6 (5) |
O1—C11—C12—N1 | 1.75 (18) | C24—C23—C28—F1 | 179.1 (2) |
N2—C11—C12—N1 | −115.26 (15) | C22—C23—C28—F1 | −4.7 (3) |
C10—C11—C12—N1 | 122.96 (15) | C24—C23—C28—C27 | 0.1 (4) |
O1—C11—C12—C2 | −124.63 (15) | C22—C23—C28—C27 | 176.3 (2) |
N2—C11—C12—C2 | 118.35 (14) | C17—C16—C29—C34 | 115.1 (2) |
C10—C11—C12—C2 | −3.43 (16) | C15—C16—C29—C34 | −125.1 (2) |
O1—C11—C12—C17 | 112.77 (15) | C17—C16—C29—C30 | −64.0 (3) |
N2—C11—C12—C17 | −4.25 (17) | C15—C16—C29—C30 | 55.8 (3) |
C10—C11—C12—C17 | −126.03 (14) | C34—C29—C30—C31 | −1.0 (4) |
C15—N1—C13—C14 | 24.5 (2) | C16—C29—C30—C31 | 178.1 (3) |
C12—N1—C13—C14 | −107.0 (2) | C29—C30—C31—C32 | 0.9 (5) |
N1—C13—C14—S1 | −39.6 (2) | C30—C31—C32—C33 | −0.1 (6) |
C15—S1—C14—C13 | 35.33 (16) | C31—C32—C33—C34 | −0.5 (6) |
C13—N1—C15—C16 | −121.28 (16) | C32—C33—C34—F2 | −179.8 (3) |
C12—N1—C15—C16 | 15.11 (18) | C32—C33—C34—C29 | 0.3 (5) |
C13—N1—C15—S1 | 2.34 (19) | C30—C29—C34—F2 | −179.5 (2) |
C12—N1—C15—S1 | 138.73 (12) | C16—C29—C34—F2 | 1.4 (3) |
C14—S1—C15—N1 | −22.38 (15) | C30—C29—C34—C33 | 0.4 (4) |
C14—S1—C15—C16 | 95.03 (15) | C16—C29—C34—C33 | −178.8 (3) |
N1—C15—C16—C29 | −161.34 (15) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O1···N1 | 0.89 (3) | 1.96 (3) | 2.636 (2) | 132 (3) |
C14—H14A···O2i | 0.97 | 2.54 | 3.156 (3) | 121 |
C22—H22A···F1ii | 0.93 | 2.44 | 3.351 (3) | 166 |
C25—H25A···S1iii | 0.93 | 2.78 | 3.545 (3) | 140 |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) −x+2, −y+1, −z+1; (iii) x+1, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C34H26F2N2O2S |
Mr | 564.63 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 296 |
a, b, c (Å) | 11.1783 (10), 16.1033 (14), 15.2165 (13) |
β (°) | 92.838 (2) |
V (Å3) | 2735.7 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.17 |
Crystal size (mm) | 0.40 × 0.26 × 0.15 |
Data collection | |
Diffractometer | Bruker SMART APEXII DUO CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.936, 0.976 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 30643, 7981, 4714 |
Rint | 0.048 |
(sin θ/λ)max (Å−1) | 0.705 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.054, 0.173, 1.03 |
No. of reflections | 7981 |
No. of parameters | 374 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.44, −0.37 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O1···N1 | 0.89 (3) | 1.96 (3) | 2.636 (2) | 132 (3) |
C14—H14A···O2i | 0.97 | 2.54 | 3.156 (3) | 121.0 |
C22—H22A···F1ii | 0.9300 | 2.4400 | 3.351 (3) | 166.00 |
C25—H25A···S1iii | 0.93 | 2.78 | 3.545 (3) | 139.9 |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) −x+2, −y+1, −z+1; (iii) x+1, −y+1/2, z+1/2. |
Acknowledgements
The authors thank the Malaysian Government and Universiti Sains Malaysia (USM) for the Research University Grants Nos. 203/PKIMIA/6711179 and 1001/PFIZIK/811151. RSK and AIM thank the Research Center, Deanship of Scientific Research, College of Science, King Saud University. SA thanks the Malaysian Government and USM for the Academic Staff Training Scheme (ASTS) Fellowship.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The development of new efficient methods to synthesize nitrogen heterocycles with structural diversity is one of the major objectives of modern synthetic organic chemists as these heterocycles are widely prevalent in nature and play a pivotal role in the pharmaceutical and drug industry (Orru & de Greef, 2003; Kirsch et al., 2004). 1,3-Dipolar cycloaddition of azomethine ylides is a versatile protocol for the construction of highly functionalized N-heterocycles (Padwa, 1984). As a continuation of our research program (Kumar et al., 2010a,b; Kumar et al., 2011a,b), we report the X-ray crystal structure determination of the title compound.
The molecular structure is shown in Fig. 1. The bond lengths and angles are within normal ranges and comparable to related structures (Kumar et al., 2010a,b; Kumar et al., 2011a,b). An intramolecular O1—H1O1···N1 hydrogen bond (Table 1) forms an S(5) ring motif (Bernstein et al., 1995). The piperidine ring (N2/C17–C21) adopts a chair conformation with puckering parameters (Cremer & Pople, 1975), Q= 0.6115 (19) Å, Θ= 142.58 (18)° and Φ= 236.7 (3)°. For the thiazolidine ring, S1/N1/C13–C15 adopts an envelope conformation with atom C14 on the flap with puckering parameters Q= 0.4212 (19) Å and φ= 209.8 (3)°. The two pyrrolidine rings adopt different conformations, N1/C12/C15–C17 is twisted about C16–C17 bond [puckering parameters, Q= 0.3857 (19) Å and φ= 273.7 (3)°], hence adopting a half-chair conformation. Meanwhile, the N2/C11/C12/C17/C18 ring is in envelope conformation with atom C18 at the flap [puckering parameters Q= 0.4598 (19) Å and φ= 148.3 (2)°]. The fluoro-substituted benzene rings (C23–C28 & C29–C34) form dihedral angles of 32.25 (10) and 38.27 (10)°, respectively, with the mean plane of the dihydroacenaphthylene ring system [C2–C12, maximum deviation of 0.043 (2) Å at atom C11]. The dihedral angle between the fluoro substituted benzene rings is 64.13 (14)°.
In the crystal packing (Fig. 2), the molecules are linked into three dimensional network via intermolecular C14—H14A···O2i, C22—H22A···F1ii and C25—H25A···S1iii (Table 1) hydrogen bonds.