organic compounds
4-Bromoacetyl-3-phenylsydnone
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bDepartment of Studies in Chemistry, Mangalore University, Mangalagangotri, Mangalore 574 199, India
*Correspondence e-mail: hkfun@usm.my
In the title compound (systematic name: 4-bromoacetyl-1,2,3-oxadiazol-3-ylium-5-olate), C10H7BrN2O3, the 1,2,3-oxadiazole ring and bromoacetyl group are essentially planar [maximum deviation = 0.010 (4) and 0.013 (3) Å respectively] and form dihedral angles of 59.31 (19) and 67.96 (11)°, respectively, with the phenyl ring. The 1,2,3-oxadiazole ring is twisted slightly from the mean plane of the bromoacetyl group, forming a dihedral angle of 9.16 (24)°. In the crystal, molecules are linked by pairs of weak C—H⋯O hydrogen bonds into inversion dimers with R22(12) ring motifs. The dimers are further connected by weak C—H⋯O hydrogen bonds into an infinite tape parallel to the b axis. In addition, π–π stacking interactions [centroid–centroid distance = 3.6569 (19) Å] and short intermolecular contacts [O⋯O = 2.827 (3) and C⋯C = 3.088 (5) Å] are observed.
Related literature
For the biological activity of et al. (2008); Hegde et al. (2008). For electrophilic on see: Kalluraya & Rahiman (1997); Kalluraya et al. (2002). For hydrogen-bond motifs, see: Bernstein et al. (1995). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
see: RaiExperimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536812026049/lh5486sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812026049/lh5486Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536812026049/lh5486Isup3.cml
To a solution of 4-acetyl-3-arylsydnone (0.01 mol) in chloroform, bromine (0.01 mol) was added under visible light irradiation. The solvent was then removed under vacuum and the residue was recrystallized from ethanol. Yellow single crystals suitable for X-ray analysis were obtained by slow evaporation of an ethanol solution.
All H atoms were positioned geometrically [C—H = 0.95 and 0.99 Å] and refined using a riding model with Uiso(H) = 1.2Ueq(C).
Sydnones constitute a well-defined class of
consisting of the 1,2,3-oxadiazole ring system. The study of remains a field of interest because of their electronic structure and also because of the varied types of biological activities displayed by some of them (Rai et al., 2008). Sydnone derivatives were found to exhibit promising anti-microbial properties (Hegde et al., 2008). are synthesized by the cyclodehydration of N-nitroso-N-substituted amino acids using acetic anhydride. The unsubstituted in the 4-position readily undergo typical electrophilic namely formylation (Kalluraya & Rahiman, 1997) and acetylation (Kalluraya et al., 2002).The
of the title compound is shown in Fig. 1. The 1,2,3-oxadiazole ring (O1/N1/N2/C7/C8) and bromoacetyl group (Br1/O3/C9/C10) are almost planar [maximum deviation = 0.010 (4) and 0.013 (3) Å, respectively] and make dihedral angles of 59.31 (19) and 67.96 (11)°, respectively, with the C1–C6 benzene ring. The 1,2,3-oxadiazole ring is slightly twisted from the bromoacetyl group as indicated by the dihedral angle of 9.16 (24)°.In the crystal (Fig. 2), molecules are linked by a pair of intermolecular C10—H10A···O2ii hydrogen bonds (Table 1) into inversion dimers with an R22(12) ring motif (Bernstein et al., 1995). The dimers are further connected by intermolecular C5—H5A···O3i hydrogen bonds (Table 1) into an infinite tape parallel to the b axis. The crystal is further stabilized by π···π interactions with a Cg1..Cg1 distance of 3.6569 (19) Å [symmetry code = 1-x,2-y,-z], where Cg1 is the centroid of O1/N1/N2/C7/C8 ring. Short intermolecular O1···O1(1-x, 3-y, -z) and C7···C7 (1-x, 2-y, -z) contacts of 2.827 (3) and 3.088 (5) Å, respectively, are also observed.
For the biological activity of
see: Rai et al. (2008); Hegde et al. (2008). For electrophilic on see: Kalluraya & Rahiman (1997); Kalluraya et al. (2002). For hydrogen-bond motifs, see: Bernstein et al. (1995). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C10H7BrN2O3 | F(000) = 560 |
Mr = 283.09 | Dx = 1.769 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 4277 reflections |
a = 7.2030 (2) Å | θ = 3.2–31.7° |
b = 5.8778 (1) Å | µ = 3.86 mm−1 |
c = 25.1133 (5) Å | T = 100 K |
β = 91.104 (2)° | Plate, yellow |
V = 1063.04 (4) Å3 | 0.50 × 0.26 × 0.09 mm |
Z = 4 |
Bruker SMART APEXII CCD area-detector diffractometer | 3710 independent reflections |
Radiation source: fine-focus sealed tube | 3041 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.035 |
φ and ω scans | θmax = 32.1°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −10→7 |
Tmin = 0.248, Tmax = 0.720 | k = −8→8 |
11985 measured reflections | l = −37→36 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.059 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.133 | H-atom parameters constrained |
S = 1.23 | w = 1/[σ2(Fo2) + (0.0334P)2 + 3.1942P] where P = (Fo2 + 2Fc2)/3 |
3710 reflections | (Δ/σ)max < 0.001 |
145 parameters | Δρmax = 0.95 e Å−3 |
0 restraints | Δρmin = −0.96 e Å−3 |
C10H7BrN2O3 | V = 1063.04 (4) Å3 |
Mr = 283.09 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 7.2030 (2) Å | µ = 3.86 mm−1 |
b = 5.8778 (1) Å | T = 100 K |
c = 25.1133 (5) Å | 0.50 × 0.26 × 0.09 mm |
β = 91.104 (2)° |
Bruker SMART APEXII CCD area-detector diffractometer | 3710 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 3041 reflections with I > 2σ(I) |
Tmin = 0.248, Tmax = 0.720 | Rint = 0.035 |
11985 measured reflections |
R[F2 > 2σ(F2)] = 0.059 | 0 restraints |
wR(F2) = 0.133 | H-atom parameters constrained |
S = 1.23 | Δρmax = 0.95 e Å−3 |
3710 reflections | Δρmin = −0.96 e Å−3 |
145 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Br1 | 0.99194 (5) | 0.42975 (6) | 0.098694 (16) | 0.02954 (12) | |
O1 | 0.5816 (4) | 1.3028 (4) | 0.02259 (10) | 0.0249 (5) | |
O2 | 0.7743 (4) | 1.0452 (5) | −0.01567 (9) | 0.0252 (5) | |
O3 | 0.7030 (4) | 0.7452 (5) | 0.14346 (10) | 0.0286 (6) | |
N1 | 0.4819 (4) | 1.3224 (5) | 0.06815 (12) | 0.0250 (6) | |
N2 | 0.5218 (4) | 1.1415 (5) | 0.09563 (11) | 0.0195 (5) | |
C1 | 0.3074 (5) | 0.9238 (7) | 0.14915 (14) | 0.0269 (7) | |
H1A | 0.2992 | 0.8127 | 0.1217 | 0.032* | |
C2 | 0.2059 (6) | 0.9026 (8) | 0.19541 (16) | 0.0322 (8) | |
H2A | 0.1261 | 0.7757 | 0.1999 | 0.039* | |
C3 | 0.2213 (6) | 1.0680 (8) | 0.23529 (15) | 0.0321 (8) | |
H3A | 0.1519 | 1.0519 | 0.2669 | 0.038* | |
C4 | 0.3365 (6) | 1.2553 (7) | 0.22939 (15) | 0.0305 (8) | |
H4A | 0.3455 | 1.3665 | 0.2568 | 0.037* | |
C5 | 0.4388 (6) | 1.2797 (6) | 0.18323 (14) | 0.0259 (7) | |
H5A | 0.5182 | 1.4069 | 0.1785 | 0.031* | |
C6 | 0.4213 (5) | 1.1132 (6) | 0.14450 (13) | 0.0213 (6) | |
C7 | 0.6843 (5) | 1.0981 (6) | 0.02248 (13) | 0.0215 (6) | |
C8 | 0.6438 (5) | 0.9965 (6) | 0.07241 (13) | 0.0187 (6) | |
C9 | 0.7339 (5) | 0.8024 (6) | 0.09781 (13) | 0.0203 (6) | |
C10 | 0.8754 (5) | 0.6855 (6) | 0.06322 (14) | 0.0240 (7) | |
H10A | 0.9721 | 0.7967 | 0.0534 | 0.029* | |
H10B | 0.8133 | 0.6322 | 0.0300 | 0.029* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.02838 (18) | 0.02301 (17) | 0.0372 (2) | 0.00214 (16) | 0.00027 (14) | −0.00141 (16) |
O1 | 0.0304 (13) | 0.0241 (12) | 0.0203 (11) | −0.0022 (11) | 0.0046 (10) | 0.0053 (10) |
O2 | 0.0260 (12) | 0.0311 (14) | 0.0188 (11) | −0.0056 (11) | 0.0069 (9) | 0.0033 (10) |
O3 | 0.0391 (15) | 0.0261 (13) | 0.0210 (12) | 0.0044 (11) | 0.0120 (11) | 0.0071 (10) |
N1 | 0.0297 (15) | 0.0222 (14) | 0.0232 (14) | 0.0000 (12) | 0.0066 (12) | 0.0026 (11) |
N2 | 0.0209 (13) | 0.0187 (12) | 0.0190 (12) | −0.0024 (10) | 0.0035 (10) | 0.0001 (10) |
C1 | 0.0294 (17) | 0.0287 (17) | 0.0230 (16) | −0.0062 (16) | 0.0079 (13) | −0.0050 (14) |
C2 | 0.0300 (18) | 0.037 (2) | 0.0297 (18) | −0.0072 (17) | 0.0112 (15) | −0.0026 (16) |
C3 | 0.0342 (19) | 0.038 (2) | 0.0242 (17) | 0.0076 (18) | 0.0109 (14) | −0.0005 (16) |
C4 | 0.044 (2) | 0.0258 (17) | 0.0221 (17) | 0.0039 (16) | 0.0078 (15) | −0.0050 (14) |
C5 | 0.0344 (18) | 0.0199 (15) | 0.0236 (16) | −0.0016 (14) | 0.0036 (14) | −0.0001 (13) |
C6 | 0.0269 (16) | 0.0197 (15) | 0.0174 (14) | 0.0003 (12) | 0.0062 (12) | 0.0005 (11) |
C7 | 0.0229 (14) | 0.0209 (15) | 0.0208 (15) | −0.0053 (12) | 0.0030 (12) | 0.0028 (12) |
C8 | 0.0213 (14) | 0.0178 (13) | 0.0172 (14) | −0.0053 (12) | 0.0049 (11) | 0.0008 (11) |
C9 | 0.0229 (15) | 0.0180 (14) | 0.0201 (14) | −0.0044 (12) | 0.0054 (12) | 0.0008 (12) |
C10 | 0.0258 (16) | 0.0197 (15) | 0.0269 (17) | 0.0006 (13) | 0.0091 (13) | 0.0026 (13) |
Br1—C10 | 1.931 (4) | C2—H2A | 0.9500 |
O1—N1 | 1.368 (4) | C3—C4 | 1.388 (6) |
O1—C7 | 1.412 (4) | C3—H3A | 0.9500 |
O2—C7 | 1.208 (4) | C4—C5 | 1.393 (5) |
O3—C9 | 1.219 (4) | C4—H4A | 0.9500 |
N1—N2 | 1.297 (4) | C5—C6 | 1.384 (5) |
N2—C8 | 1.363 (4) | C5—H5A | 0.9500 |
N2—C6 | 1.446 (4) | C7—C8 | 1.424 (4) |
C1—C6 | 1.390 (5) | C8—C9 | 1.454 (5) |
C1—C2 | 1.390 (5) | C9—C10 | 1.517 (5) |
C1—H1A | 0.9500 | C10—H10A | 0.9900 |
C2—C3 | 1.399 (6) | C10—H10B | 0.9900 |
N1—O1—C7 | 110.9 (3) | C4—C5—H5A | 121.0 |
N2—N1—O1 | 105.2 (3) | C5—C6—C1 | 123.6 (3) |
N1—N2—C8 | 115.0 (3) | C5—C6—N2 | 118.4 (3) |
N1—N2—C6 | 115.9 (3) | C1—C6—N2 | 118.0 (3) |
C8—N2—C6 | 128.9 (3) | O2—C7—O1 | 120.7 (3) |
C6—C1—C2 | 117.6 (3) | O2—C7—C8 | 135.4 (3) |
C6—C1—H1A | 121.2 | O1—C7—C8 | 103.9 (3) |
C2—C1—H1A | 121.2 | N2—C8—C7 | 105.0 (3) |
C1—C2—C3 | 120.1 (4) | N2—C8—C9 | 126.1 (3) |
C1—C2—H2A | 120.0 | C7—C8—C9 | 128.2 (3) |
C3—C2—H2A | 120.0 | O3—C9—C8 | 122.7 (3) |
C4—C3—C2 | 120.9 (3) | O3—C9—C10 | 123.4 (3) |
C4—C3—H3A | 119.5 | C8—C9—C10 | 113.8 (3) |
C2—C3—H3A | 119.5 | C9—C10—Br1 | 112.3 (2) |
C3—C4—C5 | 119.8 (3) | C9—C10—H10A | 109.1 |
C3—C4—H4A | 120.1 | Br1—C10—H10A | 109.1 |
C5—C4—H4A | 120.1 | C9—C10—H10B | 109.1 |
C6—C5—C4 | 118.0 (3) | Br1—C10—H10B | 109.1 |
C6—C5—H5A | 121.0 | H10A—C10—H10B | 107.9 |
C7—O1—N1—N2 | 0.9 (4) | N1—O1—C7—C8 | −1.7 (4) |
O1—N1—N2—C8 | 0.3 (4) | N1—N2—C8—C7 | −1.3 (4) |
O1—N1—N2—C6 | −175.4 (3) | C6—N2—C8—C7 | 173.7 (3) |
C6—C1—C2—C3 | −0.3 (6) | N1—N2—C8—C9 | 169.6 (3) |
C1—C2—C3—C4 | 0.3 (7) | C6—N2—C8—C9 | −15.4 (6) |
C2—C3—C4—C5 | −0.1 (6) | O2—C7—C8—N2 | −176.0 (4) |
C3—C4—C5—C6 | −0.1 (6) | O1—C7—C8—N2 | 1.7 (3) |
C4—C5—C6—C1 | 0.1 (6) | O2—C7—C8—C9 | 13.4 (7) |
C4—C5—C6—N2 | 177.8 (3) | O1—C7—C8—C9 | −168.9 (3) |
C2—C1—C6—C5 | 0.1 (6) | N2—C8—C9—O3 | 2.4 (6) |
C2—C1—C6—N2 | −177.6 (4) | C7—C8—C9—O3 | 171.2 (4) |
N1—N2—C6—C5 | −59.9 (4) | N2—C8—C9—C10 | −174.9 (3) |
C8—N2—C6—C5 | 125.1 (4) | C7—C8—C9—C10 | −6.2 (5) |
N1—N2—C6—C1 | 117.9 (4) | O3—C9—C10—Br1 | 2.4 (5) |
C8—N2—C6—C1 | −57.1 (5) | C8—C9—C10—Br1 | 179.8 (2) |
N1—O1—C7—O2 | 176.4 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5A···O3i | 0.95 | 2.56 | 3.490 (5) | 167 |
C10—H10A···O2ii | 0.99 | 2.27 | 3.227 (5) | 162 |
Symmetry codes: (i) x, y+1, z; (ii) −x+2, −y+2, −z. |
Experimental details
Crystal data | |
Chemical formula | C10H7BrN2O3 |
Mr | 283.09 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 7.2030 (2), 5.8778 (1), 25.1133 (5) |
β (°) | 91.104 (2) |
V (Å3) | 1063.04 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 3.86 |
Crystal size (mm) | 0.50 × 0.26 × 0.09 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.248, 0.720 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11985, 3710, 3041 |
Rint | 0.035 |
(sin θ/λ)max (Å−1) | 0.747 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.059, 0.133, 1.23 |
No. of reflections | 3710 |
No. of parameters | 145 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.95, −0.96 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5A···O3i | 0.9500 | 2.5600 | 3.490 (5) | 167.00 |
C10—H10A···O2ii | 0.9900 | 2.2700 | 3.227 (5) | 162.00 |
Symmetry codes: (i) x, y+1, z; (ii) −x+2, −y+2, −z. |
Footnotes
‡Thomson Reuters ResearcherID: A-3561-2009.
Acknowledgements
HKF and TSC thank Universiti Sains Malaysia (USM) for the Research University Grant (1001/PFIZIK/811160). TSC also thanks the Malaysian Government and USM for the award of a research fellowship.
References
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Sydnones constitute a well-defined class of mesoionic compounds consisting of the 1,2,3-oxadiazole ring system. The study of sydnones remains a field of interest because of their electronic structure and also because of the varied types of biological activities displayed by some of them (Rai et al., 2008). Sydnone derivatives were found to exhibit promising anti-microbial properties (Hegde et al., 2008). Sydnones are synthesized by the cyclodehydration of N-nitroso-N-substituted amino acids using acetic anhydride. The sydnones unsubstituted in the 4-position readily undergo typical electrophilic substitution reaction namely formylation (Kalluraya & Rahiman, 1997) and acetylation (Kalluraya et al., 2002).
The asymmetric unit of the title compound is shown in Fig. 1. The 1,2,3-oxadiazole ring (O1/N1/N2/C7/C8) and bromoacetyl group (Br1/O3/C9/C10) are almost planar [maximum deviation = 0.010 (4) and 0.013 (3) Å, respectively] and make dihedral angles of 59.31 (19) and 67.96 (11)°, respectively, with the C1–C6 benzene ring. The 1,2,3-oxadiazole ring is slightly twisted from the bromoacetyl group as indicated by the dihedral angle of 9.16 (24)°.
In the crystal (Fig. 2), molecules are linked by a pair of intermolecular C10—H10A···O2ii hydrogen bonds (Table 1) into inversion dimers with an R22(12) ring motif (Bernstein et al., 1995). The dimers are further connected by intermolecular C5—H5A···O3i hydrogen bonds (Table 1) into an infinite tape parallel to the b axis. The crystal is further stabilized by π···π interactions with a Cg1..Cg1 distance of 3.6569 (19) Å [symmetry code = 1-x,2-y,-z], where Cg1 is the centroid of O1/N1/N2/C7/C8 ring. Short intermolecular O1···O1(1-x, 3-y, -z) and C7···C7 (1-x, 2-y, -z) contacts of 2.827 (3) and 3.088 (5) Å, respectively, are also observed.