organic compounds
1′-Butyl-2-methyl-1′,2,2′,3,4,9-hexahydrospiro[benzo[f]isoindole-1,3′-indole]-2′,4,9-trione
aDepartment of Physics, Dr MGR Educational and Research Institute, Dr MGR University, Chennai 600 095, India, bDepartment of Physics, RKM Vivekananda College (Autonomous), Chennai 600 004, India, and cOrganic Chemistry Division, Central Leather Research Institute, Adyar, Chennai 600 020, India
*Correspondence e-mail: ksethusankar@yahoo.co.in
In the title compound, C24H22N2O3, the indoline and pyrrole-fused naphthoquinone units are both essentially planar [r.m.s. deviations = 0.042 (3) and 0.133 (3) Å, respectively]. The pyrrole ring adopts a C-envelope conformation. The dihedral angle between the mean planes of the two five-membered rings is 89.94 (9)°. The O atoms deviate from the mean planes of the pyrrolidine and naphthalene rings by 0.0311 (2), 0.2570 (2) and 0.1669 (2) Å. In the crystal, C—H⋯O interactions generate dimers with R22(16) and R22(18) graph-set motifs. The carbonyl O atom is involved in bifurcated hydrogen bonding. C—H⋯π interactions also occur.
Related literature
For the biological activity of indole derivatives, see: Stevenson et al. (2000); Rajeswaran et al. (1999); Amal Raj et al. (2003). For a related structure, see: McSweeney et al. (2004). For graph-set notation, see: Bernstein et al. (1995).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536812026748/pv2556sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812026748/pv2556Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536812026748/pv2556Isup3.cml
A mixture of napthaquinone (1 mmol), 1-butylisatin (1.05 mmol), and sarcosine (1.1 mmol), were stirred at 353 K about for 90 minutes. The reaction mixture was poured into water and extracted with ethyl acetate (2x25 ml). The combined extract was dried over anhydrous Na2SO4 and concentrated in vacuum. The resulting product was purified by
on silica gel (Merck, 60–120 mesh, ethyl acetate-hexane, 3:7) to afford the pure product which was subjected to crystallization by slow evaporation of a solution of ethanol resulting in single crystals of the title compound suitable for XRD studies.The H atoms were placed at calculated positions in the riding model approximation with C—H = 0.93, 0.96 and 0.97 Å for aryl, methyl and methylene H-atoms, respectively, with Uiso(H) = 1.5Ueq(methyl C) and 1.2Ueq(non-methyl C). The rotation angles for methyl groups were optimized by least squares.
Indole compounds can be used as bioactive drugs (Stevenson et al., 2000) and are also proven to display high aldose reductase inhibitory activity (Rajeswaran et al., 1999), antimicrobial and antifungal activities (Amal Raj et al., 2003).
In the title molecule (Fig. 1), the indoline moiety (N1/C1–C8) is essentially planar with rmsd 0.042 (3) Å. The pyrrole fused naphthoquinone moiety (N2/C7/C14–C24) is also planar with rmsd 0.133 (3) Å. The dihedral angle between the two five membered rings (C5/C6/C7/C8/N1) and (C7/C14/C15/C24/N2) is 89.94 (9) °.
The molecular structure of the title compound C24H22N2O3, is shown in Fig. 1. The dihedral angle between the two five membered rings (C5/C6/C7/C8/N1) and (C7/C14/C15/C24/N2) is 89.94 (9) °. The five-membered ring (C7/C14/C15/C24/N2) adopts a C13-envelope conformation with C13 0.142 (3) Å out of the plane formed by the rest of the ring atoms. The atom O1 deviates from the mean plane of the pyrrolidine ring (C5/C6/C7/C8/N1) by 0.0311 (2) Å. The atoms O2 and O3 deviate from the mean plane of the naphthalene ring (C15–C24) by 0.2570 (2) Å and 0.1669 (2) Å, respectively. The title compound exhibits the structural similarities with the already reported related structure (McSweeney et al., 2004).
The crystal packing is stabilized by intermolecular C—H···O and C—H···π interactions. The C9—H9A···O2 and C20—H20···O1 hydrogen bonds generate dimers R22(16) and R22(18) graph set motifs, respectively (Bernstein, et al., 1995); the carbonyl-group O1 atom is involved in bifurcated hydrogen bonding (Tab. 1 & Fig. 2). The crystal packing is further stabilized by C11—H11B···Cg1 interaction where Cg1 is center of gravity of (C1–C6) ring.
For the biological activity of indole derivatives, see: Stevenson et al. (2000); Rajeswaran et al. (1999); Amal Raj et al. (2003). For a related structure, see: McSweeney et al. (2004). For graph-set notation, see: Bernstein et al. (1995).
Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).C24H22N2O3 | F(000) = 1632 |
Mr = 386.44 | Dx = 1.282 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 3336 reflections |
a = 21.5855 (12) Å | θ = 2.6–24.5° |
b = 15.7999 (7) Å | µ = 0.09 mm−1 |
c = 14.7469 (7) Å | T = 293 K |
β = 127.207 (3)° | Block, colourless |
V = 4005.7 (3) Å3 | 0.30 × 0.30 × 0.25 mm |
Z = 8 |
Bruker APEXII CCD area-detector diffractometer | 3336 independent reflections |
Radiation source: fine-focus sealed tube | 2446 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.031 |
ω scans | θmax = 24.5°, θmin = 2.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | h = −24→25 |
Tmin = 0.975, Tmax = 0.979 | k = −18→18 |
32353 measured reflections | l = −17→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.052 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.178 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.1024P)2 + 2.8296P] where P = (Fo2 + 2Fc2)/3 |
3336 reflections | (Δ/σ)max < 0.001 |
264 parameters | Δρmax = 0.53 e Å−3 |
0 restraints | Δρmin = −0.26 e Å−3 |
C24H22N2O3 | V = 4005.7 (3) Å3 |
Mr = 386.44 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 21.5855 (12) Å | µ = 0.09 mm−1 |
b = 15.7999 (7) Å | T = 293 K |
c = 14.7469 (7) Å | 0.30 × 0.30 × 0.25 mm |
β = 127.207 (3)° |
Bruker APEXII CCD area-detector diffractometer | 3336 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 2446 reflections with I > 2σ(I) |
Tmin = 0.975, Tmax = 0.979 | Rint = 0.031 |
32353 measured reflections |
R[F2 > 2σ(F2)] = 0.052 | 0 restraints |
wR(F2) = 0.178 | H-atom parameters constrained |
S = 1.00 | Δρmax = 0.53 e Å−3 |
3336 reflections | Δρmin = −0.26 e Å−3 |
264 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.29896 (13) | 0.09126 (16) | 1.2560 (2) | 0.0614 (6) | |
H1 | 0.2836 | 0.0457 | 1.2781 | 0.074* | |
C2 | 0.32375 (15) | 0.16635 (19) | 1.3171 (2) | 0.0729 (7) | |
H2 | 0.3246 | 0.1715 | 1.3807 | 0.088* | |
C3 | 0.34705 (16) | 0.23335 (18) | 1.2847 (2) | 0.0726 (7) | |
H3 | 0.3634 | 0.2831 | 1.3269 | 0.087* | |
C4 | 0.34673 (14) | 0.22839 (15) | 1.1912 (2) | 0.0627 (6) | |
H4 | 0.3627 | 0.2737 | 1.1697 | 0.075* | |
C5 | 0.32181 (12) | 0.15374 (14) | 1.13096 (18) | 0.0528 (5) | |
C6 | 0.29768 (12) | 0.08615 (14) | 1.16220 (18) | 0.0517 (5) | |
C7 | 0.27195 (12) | 0.01504 (14) | 1.07856 (18) | 0.0530 (5) | |
C8 | 0.28365 (13) | 0.05586 (15) | 0.99368 (19) | 0.0570 (6) | |
C9 | 0.34151 (14) | 0.18855 (18) | 0.9826 (2) | 0.0682 (7) | |
H9A | 0.3220 | 0.2454 | 0.9752 | 0.082* | |
H9B | 0.3202 | 0.1682 | 0.9068 | 0.082* | |
C10 | 0.42958 (16) | 0.1916 (2) | 1.0533 (3) | 0.0835 (8) | |
H10A | 0.4439 | 0.2389 | 1.0275 | 0.100* | |
H10B | 0.4509 | 0.2023 | 1.1320 | 0.100* | |
C11 | 0.4655 (2) | 0.1146 (2) | 1.0486 (3) | 0.1005 (10) | |
H11A | 0.4417 | 0.0655 | 1.0556 | 0.121* | |
H11B | 0.5204 | 0.1142 | 1.1123 | 0.121* | |
C12 | 0.4562 (3) | 0.1083 (3) | 0.9369 (4) | 0.1450 (17) | |
H12A | 0.4026 | 0.1172 | 0.8736 | 0.217* | |
H12B | 0.4722 | 0.0532 | 0.9311 | 0.217* | |
H12C | 0.4878 | 0.1506 | 0.9363 | 0.217* | |
C13 | 0.39189 (15) | −0.06776 (18) | 1.1579 (3) | 0.0791 (8) | |
H13A | 0.3876 | −0.0662 | 1.0893 | 0.119* | |
H13B | 0.4171 | −0.1193 | 1.1984 | 0.119* | |
H13C | 0.4219 | −0.0202 | 1.2049 | 0.119* | |
C14 | 0.26445 (14) | −0.13602 (16) | 1.0647 (2) | 0.0708 (7) | |
H14A | 0.2738 | −0.1827 | 1.1144 | 0.085* | |
H14B | 0.2716 | −0.1555 | 1.0092 | 0.085* | |
C15 | 0.18559 (13) | −0.09920 (15) | 1.0084 (2) | 0.0585 (6) | |
C16 | 0.11206 (14) | −0.14631 (16) | 0.94742 (19) | 0.0608 (6) | |
C17 | 0.04098 (13) | −0.09477 (16) | 0.90004 (18) | 0.0575 (6) | |
C18 | −0.03032 (16) | −0.13453 (19) | 0.8497 (2) | 0.0751 (7) | |
H18 | −0.0335 | −0.1933 | 0.8458 | 0.090* | |
C19 | −0.09628 (16) | −0.0870 (2) | 0.8056 (2) | 0.0864 (9) | |
H19 | −0.1438 | −0.1138 | 0.7722 | 0.104* | |
C20 | −0.09242 (15) | −0.0007 (2) | 0.8106 (2) | 0.0816 (8) | |
H20 | −0.1373 | 0.0308 | 0.7807 | 0.098* | |
C21 | −0.02266 (14) | 0.03991 (18) | 0.8594 (2) | 0.0679 (7) | |
H21 | −0.0205 | 0.0987 | 0.8621 | 0.081* | |
C22 | 0.04459 (12) | −0.00674 (15) | 0.90473 (17) | 0.0544 (6) | |
C23 | 0.11946 (13) | 0.03774 (15) | 0.95638 (18) | 0.0557 (6) | |
C24 | 0.18925 (12) | −0.01533 (14) | 1.01543 (18) | 0.0517 (5) | |
N1 | 0.31470 (11) | 0.13398 (12) | 1.03225 (15) | 0.0557 (5) | |
N2 | 0.31480 (11) | −0.06413 (12) | 1.12956 (18) | 0.0637 (5) | |
O1 | 0.26952 (10) | 0.02136 (12) | 0.90967 (14) | 0.0752 (5) | |
O2 | 0.12328 (10) | 0.11375 (12) | 0.94839 (17) | 0.0800 (6) | |
O3 | 0.11025 (11) | −0.22243 (12) | 0.93678 (18) | 0.0870 (6) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0563 (13) | 0.0760 (16) | 0.0590 (13) | −0.0028 (11) | 0.0386 (11) | 0.0025 (12) |
C2 | 0.0712 (16) | 0.094 (2) | 0.0621 (14) | −0.0040 (14) | 0.0448 (13) | −0.0125 (14) |
C3 | 0.0728 (16) | 0.0749 (17) | 0.0730 (16) | −0.0092 (13) | 0.0455 (14) | −0.0187 (13) |
C4 | 0.0618 (14) | 0.0595 (14) | 0.0696 (15) | −0.0063 (11) | 0.0413 (12) | −0.0041 (12) |
C5 | 0.0454 (11) | 0.0626 (14) | 0.0508 (12) | 0.0019 (9) | 0.0292 (10) | 0.0007 (10) |
C6 | 0.0413 (11) | 0.0606 (13) | 0.0526 (12) | 0.0003 (9) | 0.0281 (10) | −0.0001 (10) |
C7 | 0.0468 (11) | 0.0573 (13) | 0.0564 (12) | 0.0012 (9) | 0.0320 (10) | −0.0013 (10) |
C8 | 0.0451 (12) | 0.0731 (16) | 0.0541 (13) | 0.0041 (10) | 0.0306 (10) | −0.0044 (11) |
C9 | 0.0639 (15) | 0.0821 (17) | 0.0672 (14) | 0.0016 (12) | 0.0441 (13) | 0.0125 (13) |
C10 | 0.0699 (17) | 0.101 (2) | 0.0929 (19) | −0.0033 (15) | 0.0563 (16) | 0.0024 (16) |
C11 | 0.084 (2) | 0.107 (3) | 0.115 (3) | −0.0042 (18) | 0.063 (2) | 0.003 (2) |
C12 | 0.150 (4) | 0.175 (4) | 0.137 (3) | 0.007 (3) | 0.101 (3) | −0.034 (3) |
C13 | 0.0517 (14) | 0.0852 (19) | 0.0931 (19) | 0.0096 (12) | 0.0399 (14) | 0.0035 (15) |
C14 | 0.0615 (15) | 0.0609 (15) | 0.0879 (18) | 0.0039 (11) | 0.0441 (14) | 0.0010 (13) |
C15 | 0.0546 (13) | 0.0578 (14) | 0.0625 (13) | −0.0003 (10) | 0.0351 (11) | −0.0022 (11) |
C16 | 0.0642 (15) | 0.0571 (15) | 0.0627 (14) | −0.0050 (11) | 0.0392 (12) | −0.0010 (11) |
C17 | 0.0549 (13) | 0.0713 (15) | 0.0502 (12) | −0.0077 (11) | 0.0339 (11) | −0.0039 (11) |
C18 | 0.0649 (16) | 0.0880 (19) | 0.0735 (16) | −0.0184 (14) | 0.0423 (14) | −0.0115 (14) |
C19 | 0.0568 (16) | 0.124 (3) | 0.0774 (18) | −0.0200 (16) | 0.0404 (15) | −0.0171 (18) |
C20 | 0.0521 (15) | 0.121 (3) | 0.0659 (16) | 0.0077 (15) | 0.0326 (13) | −0.0033 (16) |
C21 | 0.0536 (14) | 0.0880 (18) | 0.0578 (14) | 0.0083 (12) | 0.0315 (12) | 0.0010 (12) |
C22 | 0.0477 (12) | 0.0713 (15) | 0.0448 (11) | 0.0013 (10) | 0.0283 (10) | 0.0014 (10) |
C23 | 0.0550 (13) | 0.0609 (15) | 0.0529 (12) | 0.0029 (10) | 0.0335 (11) | 0.0030 (10) |
C24 | 0.0484 (12) | 0.0550 (13) | 0.0524 (12) | 0.0002 (9) | 0.0308 (10) | −0.0016 (10) |
N1 | 0.0547 (11) | 0.0645 (12) | 0.0546 (10) | −0.0010 (9) | 0.0365 (9) | 0.0006 (9) |
N2 | 0.0489 (11) | 0.0605 (12) | 0.0736 (13) | 0.0066 (8) | 0.0328 (10) | 0.0030 (10) |
O1 | 0.0700 (11) | 0.0974 (13) | 0.0652 (10) | −0.0079 (9) | 0.0446 (9) | −0.0194 (10) |
O2 | 0.0657 (11) | 0.0588 (11) | 0.1013 (14) | 0.0054 (8) | 0.0430 (10) | 0.0115 (9) |
O3 | 0.0802 (13) | 0.0600 (12) | 0.1113 (15) | −0.0097 (9) | 0.0528 (12) | −0.0038 (10) |
C1—C6 | 1.369 (3) | C12—H12B | 0.9600 |
C1—C2 | 1.386 (4) | C12—H12C | 0.9600 |
C1—H1 | 0.9300 | C13—N2 | 1.451 (3) |
C2—C3 | 1.376 (4) | C13—H13A | 0.9600 |
C2—H2 | 0.9300 | C13—H13B | 0.9600 |
C3—C4 | 1.376 (3) | C13—H13C | 0.9600 |
C3—H3 | 0.9300 | C14—N2 | 1.459 (3) |
C4—C5 | 1.375 (3) | C14—C15 | 1.489 (3) |
C4—H4 | 0.9300 | C14—H14A | 0.9700 |
C5—C6 | 1.384 (3) | C14—H14B | 0.9700 |
C5—N1 | 1.403 (3) | C15—C24 | 1.328 (3) |
C6—C7 | 1.505 (3) | C15—C16 | 1.468 (3) |
C7—N2 | 1.464 (3) | C16—O3 | 1.211 (3) |
C7—C24 | 1.508 (3) | C16—C17 | 1.486 (3) |
C7—C8 | 1.558 (3) | C17—C22 | 1.392 (3) |
C8—O1 | 1.212 (3) | C17—C18 | 1.390 (3) |
C8—N1 | 1.355 (3) | C18—C19 | 1.377 (4) |
C9—N1 | 1.459 (3) | C18—H18 | 0.9300 |
C9—C10 | 1.519 (4) | C19—C20 | 1.365 (4) |
C9—H9A | 0.9700 | C19—H19 | 0.9300 |
C9—H9B | 0.9700 | C20—C21 | 1.373 (4) |
C10—C11 | 1.467 (5) | C20—H20 | 0.9300 |
C10—H10A | 0.9700 | C21—C22 | 1.387 (3) |
C10—H10B | 0.9700 | C21—H21 | 0.9300 |
C11—C12 | 1.536 (5) | C22—C23 | 1.482 (3) |
C11—H11A | 0.9700 | C23—O2 | 1.214 (3) |
C11—H11B | 0.9700 | C23—C24 | 1.464 (3) |
C12—H12A | 0.9600 | ||
C6—C1—C2 | 118.1 (2) | H12B—C12—H12C | 109.5 |
C6—C1—H1 | 121.0 | N2—C13—H13A | 109.5 |
C2—C1—H1 | 121.0 | N2—C13—H13B | 109.5 |
C3—C2—C1 | 120.7 (2) | H13A—C13—H13B | 109.5 |
C3—C2—H2 | 119.6 | N2—C13—H13C | 109.5 |
C1—C2—H2 | 119.6 | H13A—C13—H13C | 109.5 |
C2—C3—C4 | 121.5 (2) | H13B—C13—H13C | 109.5 |
C2—C3—H3 | 119.2 | N2—C14—C15 | 102.05 (19) |
C4—C3—H3 | 119.2 | N2—C14—H14A | 111.4 |
C3—C4—C5 | 117.3 (2) | C15—C14—H14A | 111.4 |
C3—C4—H4 | 121.3 | N2—C14—H14B | 111.4 |
C5—C4—H4 | 121.3 | C15—C14—H14B | 111.4 |
C4—C5—C6 | 121.7 (2) | H14A—C14—H14B | 109.2 |
C4—C5—N1 | 128.0 (2) | C24—C15—C16 | 123.0 (2) |
C6—C5—N1 | 110.27 (19) | C24—C15—C14 | 110.6 (2) |
C1—C6—C5 | 120.6 (2) | C16—C15—C14 | 126.3 (2) |
C1—C6—C7 | 130.1 (2) | O3—C16—C15 | 121.4 (2) |
C5—C6—C7 | 109.27 (19) | O3—C16—C17 | 122.7 (2) |
N2—C7—C6 | 114.30 (18) | C15—C16—C17 | 115.9 (2) |
N2—C7—C24 | 100.92 (17) | C22—C17—C18 | 119.2 (2) |
C6—C7—C24 | 117.14 (18) | C22—C17—C16 | 120.9 (2) |
N2—C7—C8 | 114.02 (18) | C18—C17—C16 | 119.9 (2) |
C6—C7—C8 | 100.99 (18) | C19—C18—C17 | 120.0 (3) |
C24—C7—C8 | 110.01 (17) | C19—C18—H18 | 120.0 |
O1—C8—N1 | 126.4 (2) | C17—C18—H18 | 120.0 |
O1—C8—C7 | 124.9 (2) | C20—C19—C18 | 120.5 (3) |
N1—C8—C7 | 108.61 (18) | C20—C19—H19 | 119.7 |
N1—C9—C10 | 112.7 (2) | C18—C19—H19 | 119.7 |
N1—C9—H9A | 109.1 | C19—C20—C21 | 120.4 (3) |
C10—C9—H9A | 109.1 | C19—C20—H20 | 119.8 |
N1—C9—H9B | 109.1 | C21—C20—H20 | 119.8 |
C10—C9—H9B | 109.1 | C20—C21—C22 | 120.0 (3) |
H9A—C9—H9B | 107.8 | C20—C21—H21 | 120.0 |
C11—C10—C9 | 114.7 (3) | C22—C21—H21 | 120.0 |
C11—C10—H10A | 108.6 | C21—C22—C17 | 119.7 (2) |
C9—C10—H10A | 108.6 | C21—C22—C23 | 119.6 (2) |
C11—C10—H10B | 108.6 | C17—C22—C23 | 120.67 (19) |
C9—C10—H10B | 108.6 | O2—C23—C24 | 121.2 (2) |
H10A—C10—H10B | 107.6 | O2—C23—C22 | 122.4 (2) |
C10—C11—C12 | 111.9 (3) | C24—C23—C22 | 116.4 (2) |
C10—C11—H11A | 109.2 | C15—C24—C23 | 122.3 (2) |
C12—C11—H11A | 109.2 | C15—C24—C7 | 110.99 (19) |
C10—C11—H11B | 109.2 | C23—C24—C7 | 126.4 (2) |
C12—C11—H11B | 109.2 | C8—N1—C5 | 110.76 (18) |
H11A—C11—H11B | 107.9 | C8—N1—C9 | 124.99 (19) |
C11—C12—H12A | 109.5 | C5—N1—C9 | 124.2 (2) |
C11—C12—H12B | 109.5 | C13—N2—C14 | 115.3 (2) |
H12A—C12—H12B | 109.5 | C13—N2—C7 | 116.1 (2) |
C11—C12—H12C | 109.5 | C14—N2—C7 | 109.86 (18) |
H12A—C12—H12C | 109.5 | ||
C6—C1—C2—C3 | −0.6 (4) | C20—C21—C22—C23 | 179.5 (2) |
C1—C2—C3—C4 | −0.1 (4) | C18—C17—C22—C21 | 0.1 (3) |
C2—C3—C4—C5 | 0.3 (4) | C16—C17—C22—C21 | 179.7 (2) |
C3—C4—C5—C6 | 0.2 (3) | C18—C17—C22—C23 | −179.2 (2) |
C3—C4—C5—N1 | 178.6 (2) | C16—C17—C22—C23 | 0.5 (3) |
C2—C1—C6—C5 | 1.1 (3) | C21—C22—C23—O2 | −9.4 (3) |
C2—C1—C6—C7 | −178.1 (2) | C17—C22—C23—O2 | 169.8 (2) |
C4—C5—C6—C1 | −0.9 (3) | C21—C22—C23—C24 | 172.3 (2) |
N1—C5—C6—C1 | −179.54 (19) | C17—C22—C23—C24 | −8.5 (3) |
C4—C5—C6—C7 | 178.4 (2) | C16—C15—C24—C23 | −4.1 (4) |
N1—C5—C6—C7 | −0.2 (2) | C14—C15—C24—C23 | 173.1 (2) |
C1—C6—C7—N2 | −59.5 (3) | C16—C15—C24—C7 | −177.4 (2) |
C5—C6—C7—N2 | 121.3 (2) | C14—C15—C24—C7 | −0.3 (3) |
C1—C6—C7—C24 | 58.2 (3) | O2—C23—C24—C15 | −167.8 (2) |
C5—C6—C7—C24 | −121.0 (2) | C22—C23—C24—C15 | 10.5 (3) |
C1—C6—C7—C8 | 177.7 (2) | O2—C23—C24—C7 | 4.4 (3) |
C5—C6—C7—C8 | −1.6 (2) | C22—C23—C24—C7 | −177.30 (19) |
N2—C7—C8—O1 | 57.6 (3) | N2—C7—C24—C15 | −13.6 (2) |
C6—C7—C8—O1 | −179.4 (2) | C6—C7—C24—C15 | −138.4 (2) |
C24—C7—C8—O1 | −55.0 (3) | C8—C7—C24—C15 | 107.1 (2) |
N2—C7—C8—N1 | −120.1 (2) | N2—C7—C24—C23 | 173.4 (2) |
C6—C7—C8—N1 | 2.9 (2) | C6—C7—C24—C23 | 48.6 (3) |
C24—C7—C8—N1 | 127.36 (19) | C8—C7—C24—C23 | −65.9 (3) |
N1—C9—C10—C11 | 72.8 (3) | O1—C8—N1—C5 | 179.1 (2) |
C9—C10—C11—C12 | 76.8 (4) | C7—C8—N1—C5 | −3.3 (2) |
N2—C14—C15—C24 | 14.2 (3) | O1—C8—N1—C9 | −4.3 (4) |
N2—C14—C15—C16 | −168.8 (2) | C7—C8—N1—C9 | 173.35 (19) |
C24—C15—C16—O3 | 175.6 (2) | C4—C5—N1—C8 | −176.2 (2) |
C14—C15—C16—O3 | −1.1 (4) | C6—C5—N1—C8 | 2.2 (2) |
C24—C15—C16—C17 | −4.2 (3) | C4—C5—N1—C9 | 7.1 (3) |
C14—C15—C16—C17 | 179.0 (2) | C6—C5—N1—C9 | −174.4 (2) |
O3—C16—C17—C22 | −173.9 (2) | C10—C9—N1—C8 | −104.7 (3) |
C15—C16—C17—C22 | 5.9 (3) | C10—C9—N1—C5 | 71.5 (3) |
O3—C16—C17—C18 | 5.8 (4) | C15—C14—N2—C13 | −156.7 (2) |
C15—C16—C17—C18 | −174.4 (2) | C15—C14—N2—C7 | −23.2 (3) |
C22—C17—C18—C19 | −0.3 (4) | C6—C7—N2—C13 | −77.4 (3) |
C16—C17—C18—C19 | −179.9 (2) | C24—C7—N2—C13 | 155.9 (2) |
C17—C18—C19—C20 | 0.2 (4) | C8—C7—N2—C13 | 38.1 (3) |
C18—C19—C20—C21 | 0.2 (4) | C6—C7—N2—C14 | 149.4 (2) |
C19—C20—C21—C22 | −0.4 (4) | C24—C7—N2—C14 | 22.8 (2) |
C20—C21—C22—C17 | 0.3 (3) | C8—C7—N2—C14 | −95.1 (2) |
Cg1 is the centroid of the C1–C6 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···O1i | 0.93 | 2.39 | 3.232 (4) | 151 |
C9—H9A···O2ii | 0.97 | 2.45 | 3.230 (3) | 137 |
C20—H20···O1iii | 0.93 | 2.52 | 3.205 (3) | 131 |
C11—H11B···Cg1iv | 0.97 | 2.82 | 3.759 (4) | 164 |
Symmetry codes: (i) x, −y, z+1/2; (ii) −x+1/2, −y+1/2, −z+2; (iii) −x, y, −z+3/2; (iv) −x+1, y, −z+5/2. |
Experimental details
Crystal data | |
Chemical formula | C24H22N2O3 |
Mr | 386.44 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 293 |
a, b, c (Å) | 21.5855 (12), 15.7999 (7), 14.7469 (7) |
β (°) | 127.207 (3) |
V (Å3) | 4005.7 (3) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.30 × 0.30 × 0.25 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2008) |
Tmin, Tmax | 0.975, 0.979 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 32353, 3336, 2446 |
Rint | 0.031 |
(sin θ/λ)max (Å−1) | 0.584 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.052, 0.178, 1.00 |
No. of reflections | 3336 |
No. of parameters | 264 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.53, −0.26 |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SHELXS97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
Cg1 is the centroid of the C1–C6 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···O1i | 0.93 | 2.39 | 3.232 (4) | 151.2 |
C9—H9A···O2ii | 0.97 | 2.45 | 3.230 (3) | 137 |
C20—H20···O1iii | 0.93 | 2.52 | 3.205 (3) | 131 |
C11—H11B···Cg1iv | 0.97 | 2.82 | 3.759 (4) | 164 |
Symmetry codes: (i) x, −y, z+1/2; (ii) −x+1/2, −y+1/2, −z+2; (iii) −x, y, −z+3/2; (iv) −x+1, y, −z+5/2. |
Acknowledgements
The authors thank Dr Babu Varghese, SAIF, IIT, Chennai, India, for the data collection. GJ and KS thank Dr V. Murugan, Head of the Department of Physics, RKM Vivekananda College, Chennai, India, for providing facilities in the department to carry out this work.
References
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Indole compounds can be used as bioactive drugs (Stevenson et al., 2000) and are also proven to display high aldose reductase inhibitory activity (Rajeswaran et al., 1999), antimicrobial and antifungal activities (Amal Raj et al., 2003).
In the title molecule (Fig. 1), the indoline moiety (N1/C1–C8) is essentially planar with rmsd 0.042 (3) Å. The pyrrole fused naphthoquinone moiety (N2/C7/C14–C24) is also planar with rmsd 0.133 (3) Å. The dihedral angle between the two five membered rings (C5/C6/C7/C8/N1) and (C7/C14/C15/C24/N2) is 89.94 (9) °.
The molecular structure of the title compound C24H22N2O3, is shown in Fig. 1. The dihedral angle between the two five membered rings (C5/C6/C7/C8/N1) and (C7/C14/C15/C24/N2) is 89.94 (9) °. The five-membered ring (C7/C14/C15/C24/N2) adopts a C13-envelope conformation with C13 0.142 (3) Å out of the plane formed by the rest of the ring atoms. The atom O1 deviates from the mean plane of the pyrrolidine ring (C5/C6/C7/C8/N1) by 0.0311 (2) Å. The atoms O2 and O3 deviate from the mean plane of the naphthalene ring (C15–C24) by 0.2570 (2) Å and 0.1669 (2) Å, respectively. The title compound exhibits the structural similarities with the already reported related structure (McSweeney et al., 2004).
The crystal packing is stabilized by intermolecular C—H···O and C—H···π interactions. The C9—H9A···O2 and C20—H20···O1 hydrogen bonds generate dimers R22(16) and R22(18) graph set motifs, respectively (Bernstein, et al., 1995); the carbonyl-group O1 atom is involved in bifurcated hydrogen bonding (Tab. 1 & Fig. 2). The crystal packing is further stabilized by C11—H11B···Cg1 interaction where Cg1 is center of gravity of (C1–C6) ring.