metal-organic compounds
Tetraaqua{5-[(pyridin-2-ylmethylidene)amino]benzene-1,3-dicarboxylato-κ2N,N′}nickel(II) tetrahydrate
aCollege of Environmental and Energy Engineering, Beijing University of Technology, Beijing 100124, People's Republic of China, and bLangfang Health Vocational College, Langfang 065001, People's Republic of China
*Correspondence e-mail: xieyabo@bjut.edu.cn
The title structure, [Ni(C14H8N2O4)(H2O)4]·4H2O, contains a mononuclear NiII complex formed by a chelating bidentate Schiff base and by four Ni-bonded water molecules. The NiII atom is in a distorted octahedral coordination by two N atoms in a cis disposition [Ni—N = 2.0753 (16) and 2.1048 (16) Å] and by four water O atoms [Ni—O = 2.0500 (15)–2.0822 (15) Å]. The is completed by four further non-coordinating water molecules and all constituents are linked in a three-dimensional manner by an extensive system of 16 O—H⋯O hydrogen bonds.
Related literature
For related coordination compounds, see: Buffin et al. (2004); Datta et al. (2005); Jiang et al. (2007).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536812027122/qk2036sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812027122/qk2036Isup2.hkl
The title complex was prepared by slowly adding 1 ml of H2O solution of 5-(pyridin-2-ylmethyleneamino)isophthalic acid (0.1 mmol, 27.1 mg) to 6 ml of a solution of Ni(NO3)2 (0.1 mmol, 18.2 mg) in MeOH/H2O (V:V = 2:1) at room temperature with stirring. The pH value of the solution was adjusted to 7 by addition of aqueous NaOH. The resulting solution was slowly evaporated at room temperature over several days until green single crystals suitable for X-ray diffraction were obtained.
All C-bound H atoms were placed geometrically and treated as riding with C—H = 0.95 Å and Uiso(H) = 1.2Ueq(C). The water H atoms were located in a difference Fourier map and refined in x,y,z and Uiso(H) using an distance restraint of O—H = 0.85 (1) Å.
Schiff bases with carboxylic groups derived from pyridine 2-carboxaldehyde and amino
are a kind of multifunctional ligand having several potential coordination sites involving N and carboxylate oxygen atoms. The structural chemistry of the coordination compounds of involving some amino benzoic acids and amino acids have been studied (Buffin et al., 2004; Datta et al., 2005; Jiang et al., 2007). However, that of 5-(pyridin-2-ylmethyleneamino)isophthalic acid created by condensation of pyridine 2-carboxaldehyde and 5-aminoisophthalic acid has not been reported. Herein, we describe the synthesis and structural characterization of a new nickel complex coordinated by 5-(pyridin-2-ylmethyleneamino)isophthalic acid. The structure is built up from a neutral mononuclear complex [Ni(C14H8N2O4)(H2O)4] and from four uncoordinated water molecules. Each Ni(II) ion is six-coordinated by two N atoms of the Schiff base ligand and four O atoms from four water molecules, forming a slightly distorted octahedral coordination geometry. The ligand adopts N,N'-bidentate coordination mode with two N atoms chelating Ni(II) in cis-configuration. In the complex, the two Ni—N bond lengths differ modestly, with Ni—N (pyridine) = 2.0753 (16) Å and Ni—N (azomethine) = 2.1048 (16) Å. Likewise, the four Ni—O bonds vary little, from 2.0500 (15) to 2.0822 (15) Å. The eight independent water molecules form 16 different 16 O—H···O hydrogen bonds with O···O distances between 2.6630 (18) Å and 3.157 (2) Å (Table 1). They link the constituents into a three-dimensional supramolecular structure. Nine of these hydrogen bonds are accepted by carboxyl oxygen atoms, while seven are accepted by the water molecules (with one exception by non-coordinating water molecules, cf. Table 1).For related coordination compounds, see: Buffin et al. (2004); Datta et al. (2005); Jiang et al. (2007).
Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. Molecular structure of the title compound with displacement ellipsoids drawn at the 30% probability level for non-hydrogen atoms, hydrogen atoms are shown as small circles of arbitrary radius. |
[Ni(C14H8N2O4)(H2O)4]·4H2O | F(000) = 492 |
Mr = 471.06 | Dx = 1.563 Mg m−3 |
Monoclinic, Pn | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P -2yac | Cell parameters from 4687 reflections |
a = 10.998 (2) Å | θ = 2.7–28.3° |
b = 7.4536 (15) Å | µ = 1.03 mm−1 |
c = 12.271 (3) Å | T = 153 K |
β = 95.86 (3)° | Block, green |
V = 1000.7 (3) Å3 | 0.28 × 0.25 × 0.23 mm |
Z = 2 |
Bruker APEXII CCD diffractometer | 3243 independent reflections |
Radiation source: fine-focus sealed tube | 3186 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.011 |
π and ω scans | θmax = 25.0°, θmin = 2.4° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2001) | h = −12→13 |
Tmin = 0.76, Tmax = 0.79 | k = −8→5 |
4844 measured reflections | l = −14→13 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.018 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.044 | w = 1/[σ2(Fo2) + (0.P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.00 | (Δ/σ)max = 0.001 |
3243 reflections | Δρmax = 0.17 e Å−3 |
326 parameters | Δρmin = −0.32 e Å−3 |
18 restraints | Absolute structure: Flack (1983), 1482 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.012 (7) |
[Ni(C14H8N2O4)(H2O)4]·4H2O | V = 1000.7 (3) Å3 |
Mr = 471.06 | Z = 2 |
Monoclinic, Pn | Mo Kα radiation |
a = 10.998 (2) Å | µ = 1.03 mm−1 |
b = 7.4536 (15) Å | T = 153 K |
c = 12.271 (3) Å | 0.28 × 0.25 × 0.23 mm |
β = 95.86 (3)° |
Bruker APEXII CCD diffractometer | 3243 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2001) | 3186 reflections with I > 2σ(I) |
Tmin = 0.76, Tmax = 0.79 | Rint = 0.011 |
4844 measured reflections |
R[F2 > 2σ(F2)] = 0.018 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.044 | Δρmax = 0.17 e Å−3 |
S = 1.00 | Δρmin = −0.32 e Å−3 |
3243 reflections | Absolute structure: Flack (1983), 1482 Friedel pairs |
326 parameters | Absolute structure parameter: 0.012 (7) |
18 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Ni1 | 0.37023 (2) | 0.06687 (3) | 0.25107 (2) | 0.02312 (6) | |
O11 | 0.59391 (13) | 0.4492 (2) | 0.60907 (11) | 0.0365 (3) | |
O12 | 0.79525 (13) | 0.44664 (17) | 0.65146 (10) | 0.0312 (3) | |
O13 | 0.99057 (13) | 0.0971 (2) | 0.23435 (11) | 0.0368 (3) | |
O14 | 1.06809 (13) | 0.2502 (2) | 0.37992 (11) | 0.0437 (4) | |
N1 | 0.33191 (14) | 0.1330 (2) | 0.08687 (12) | 0.0262 (3) | |
N2 | 0.53004 (14) | 0.2062 (2) | 0.22151 (11) | 0.0245 (3) | |
C1 | 0.61826 (18) | 0.3092 (3) | 0.39979 (14) | 0.0251 (4) | |
H1 | 0.5381 | 0.3345 | 0.4179 | 0.030* | |
C2 | 0.71820 (17) | 0.3406 (3) | 0.47565 (14) | 0.0235 (4) | |
C3 | 0.83473 (18) | 0.3022 (3) | 0.44835 (15) | 0.0259 (4) | |
H3 | 0.9034 | 0.3248 | 0.5000 | 0.031* | |
C4 | 0.85227 (17) | 0.2312 (3) | 0.34669 (14) | 0.0250 (4) | |
C5 | 0.75203 (17) | 0.1988 (3) | 0.27103 (14) | 0.0265 (4) | |
H5 | 0.7631 | 0.1481 | 0.2017 | 0.032* | |
C6 | 0.63539 (17) | 0.2408 (2) | 0.29722 (13) | 0.0236 (4) | |
C7 | 0.70072 (18) | 0.4171 (2) | 0.58770 (15) | 0.0262 (4) | |
C8 | 0.97978 (17) | 0.1900 (3) | 0.31911 (14) | 0.0288 (4) | |
C9 | 0.22699 (19) | 0.1125 (3) | 0.02380 (15) | 0.0317 (4) | |
H9 | 0.1610 | 0.0535 | 0.0531 | 0.038* | |
C10 | 0.42487 (17) | 0.2153 (3) | 0.04433 (14) | 0.0276 (4) | |
C11 | 0.4170 (2) | 0.2744 (3) | −0.06311 (15) | 0.0365 (5) | |
H11 | 0.4852 | 0.3281 | −0.0920 | 0.044* | |
C12 | 0.3065 (2) | 0.2531 (3) | −0.12734 (17) | 0.0387 (5) | |
H12 | 0.2975 | 0.2929 | −0.2013 | 0.046* | |
C13 | 0.2108 (2) | 0.1744 (3) | −0.08316 (15) | 0.0376 (5) | |
H13 | 0.1339 | 0.1620 | −0.1253 | 0.045* | |
C14 | 0.53287 (18) | 0.2494 (3) | 0.12145 (15) | 0.0298 (4) | |
H27A | 0.6038 | 0.3028 | 0.0973 | 0.036* | |
O1W | 0.45336 (14) | −0.1770 (2) | 0.22189 (11) | 0.0320 (3) | |
H1WA | 0.5141 (17) | −0.182 (4) | 0.1854 (19) | 0.051 (8)* | |
H1WB | 0.404 (2) | −0.260 (3) | 0.197 (2) | 0.052 (8)* | |
O2W | 0.28859 (13) | 0.29701 (19) | 0.30190 (10) | 0.0287 (3) | |
H2WA | 0.282 (2) | 0.380 (2) | 0.2549 (15) | 0.041 (7)* | |
H2WB | 0.2170 (12) | 0.278 (4) | 0.318 (2) | 0.040 (7)* | |
O3W | 0.21080 (13) | −0.0759 (2) | 0.25377 (13) | 0.0347 (3) | |
H3WA | 0.1436 (15) | −0.021 (3) | 0.2488 (19) | 0.045 (7)* | |
H3WB | 0.213 (3) | −0.161 (3) | 0.2999 (18) | 0.052 (9)* | |
O4W | 0.42066 (14) | 0.0135 (2) | 0.41328 (11) | 0.0354 (3) | |
H4WA | 0.426 (2) | −0.0947 (16) | 0.4340 (18) | 0.039 (7)* | |
H4WB | 0.404 (3) | 0.071 (3) | 0.4687 (15) | 0.053 (8)* | |
O5W | 0.90461 (16) | −0.2004 (3) | 0.10994 (13) | 0.0428 (4) | |
H5WA | 0.960 (2) | −0.278 (4) | 0.121 (3) | 0.072 (11)* | |
H5WB | 0.923 (3) | −0.118 (3) | 0.1558 (17) | 0.056 (8)* | |
O6W | 0.2147 (2) | −0.3434 (3) | 0.41405 (17) | 0.0606 (5) | |
H6WA | 0.2869 (17) | −0.353 (6) | 0.448 (3) | 0.099 (13)* | |
H6WB | 0.208 (7) | −0.455 (3) | 0.400 (7) | 0.24 (3)* | |
O7W | 0.43501 (19) | 0.7089 (3) | 0.54059 (15) | 0.0513 (5) | |
H7WA | 0.481 (2) | 0.617 (3) | 0.554 (2) | 0.064 (9)* | |
H7WB | 0.440 (4) | 0.779 (4) | 0.596 (2) | 0.097 (13)* | |
O8W | 0.6440 (2) | −0.2071 (5) | 0.09886 (15) | 0.1086 (11) | |
H8WA | 0.7214 (10) | −0.215 (5) | 0.107 (3) | 0.098 (12)* | |
H8WB | 0.638 (3) | −0.166 (5) | 0.0353 (14) | 0.088 (11)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ni1 | 0.01730 (11) | 0.03003 (11) | 0.02190 (9) | 0.00037 (11) | 0.00138 (7) | 0.00049 (11) |
O11 | 0.0299 (8) | 0.0466 (9) | 0.0337 (7) | 0.0084 (7) | 0.0070 (6) | −0.0074 (7) |
O12 | 0.0304 (8) | 0.0353 (8) | 0.0270 (6) | 0.0010 (6) | −0.0011 (6) | −0.0065 (6) |
O13 | 0.0244 (8) | 0.0506 (9) | 0.0361 (7) | 0.0039 (7) | 0.0062 (6) | −0.0093 (7) |
O14 | 0.0179 (7) | 0.0810 (12) | 0.0321 (7) | −0.0026 (7) | 0.0019 (6) | −0.0121 (7) |
N1 | 0.0212 (8) | 0.0314 (9) | 0.0253 (7) | 0.0028 (7) | −0.0011 (6) | −0.0035 (7) |
N2 | 0.0182 (8) | 0.0319 (9) | 0.0229 (7) | 0.0009 (7) | 0.0000 (6) | −0.0014 (7) |
C1 | 0.0198 (9) | 0.0295 (10) | 0.0264 (8) | 0.0006 (8) | 0.0039 (7) | 0.0011 (8) |
C2 | 0.0226 (10) | 0.0261 (10) | 0.0219 (8) | 0.0010 (8) | 0.0019 (7) | 0.0015 (7) |
C3 | 0.0204 (10) | 0.0306 (11) | 0.0261 (9) | −0.0008 (8) | −0.0001 (8) | 0.0014 (8) |
C4 | 0.0194 (9) | 0.0310 (10) | 0.0247 (8) | −0.0003 (8) | 0.0034 (7) | 0.0007 (7) |
C5 | 0.0215 (10) | 0.0356 (10) | 0.0226 (8) | 0.0001 (8) | 0.0032 (7) | −0.0012 (8) |
C6 | 0.0189 (10) | 0.0288 (9) | 0.0225 (8) | −0.0017 (7) | −0.0001 (7) | 0.0009 (7) |
C7 | 0.0261 (11) | 0.0250 (9) | 0.0278 (9) | 0.0033 (8) | 0.0043 (7) | −0.0002 (7) |
C8 | 0.0219 (10) | 0.0388 (11) | 0.0264 (9) | 0.0023 (8) | 0.0051 (7) | 0.0026 (8) |
C9 | 0.0253 (10) | 0.0376 (11) | 0.0309 (9) | 0.0000 (9) | −0.0028 (8) | −0.0037 (9) |
C10 | 0.0231 (10) | 0.0347 (11) | 0.0250 (8) | 0.0037 (8) | 0.0029 (7) | −0.0020 (8) |
C11 | 0.0359 (12) | 0.0491 (13) | 0.0248 (9) | 0.0052 (10) | 0.0043 (8) | 0.0009 (9) |
C12 | 0.0434 (14) | 0.0479 (14) | 0.0228 (9) | 0.0077 (11) | −0.0059 (9) | −0.0006 (9) |
C13 | 0.0358 (12) | 0.0424 (12) | 0.0316 (10) | 0.0039 (10) | −0.0108 (8) | −0.0069 (9) |
C14 | 0.0222 (10) | 0.0422 (12) | 0.0254 (9) | −0.0029 (8) | 0.0037 (7) | 0.0021 (8) |
O1W | 0.0236 (8) | 0.0363 (8) | 0.0361 (7) | 0.0018 (7) | 0.0035 (6) | −0.0063 (6) |
O2W | 0.0253 (8) | 0.0324 (8) | 0.0290 (7) | 0.0004 (6) | 0.0058 (6) | 0.0038 (6) |
O3W | 0.0210 (8) | 0.0361 (8) | 0.0475 (8) | −0.0001 (6) | 0.0065 (7) | 0.0005 (7) |
O4W | 0.0477 (9) | 0.0341 (8) | 0.0247 (7) | 0.0011 (8) | 0.0043 (6) | 0.0034 (7) |
O5W | 0.0378 (10) | 0.0533 (11) | 0.0367 (8) | 0.0026 (9) | 0.0010 (7) | −0.0056 (8) |
O6W | 0.0602 (13) | 0.0528 (11) | 0.0698 (11) | 0.0011 (10) | 0.0114 (10) | −0.0038 (10) |
O7W | 0.0583 (13) | 0.0500 (11) | 0.0451 (10) | 0.0174 (10) | 0.0023 (9) | 0.0078 (9) |
O8W | 0.0349 (12) | 0.256 (4) | 0.0353 (10) | 0.0051 (16) | 0.0066 (8) | −0.0276 (14) |
Ni1—O4W | 2.0500 (15) | C9—H9 | 0.9500 |
Ni1—O3W | 2.0542 (15) | C10—C11 | 1.384 (3) |
Ni1—O2W | 2.0621 (14) | C10—C14 | 1.463 (3) |
Ni1—N1 | 2.0753 (16) | C11—C12 | 1.389 (3) |
Ni1—O1W | 2.0822 (15) | C11—H11 | 0.9500 |
Ni1—N2 | 2.1048 (16) | C12—C13 | 1.364 (3) |
O11—C7 | 1.253 (2) | C12—H12 | 0.9500 |
O12—C7 | 1.255 (2) | C13—H13 | 0.9500 |
O13—C8 | 1.265 (2) | C14—H27A | 0.9500 |
O14—C8 | 1.247 (2) | O1W—H1WA | 0.842 (10) |
N1—C9 | 1.331 (2) | O1W—H1WB | 0.853 (10) |
N1—C10 | 1.343 (3) | O2W—H2WA | 0.846 (10) |
N2—C14 | 1.273 (2) | O2W—H2WB | 0.843 (10) |
N2—C6 | 1.433 (2) | O3W—H3WA | 0.842 (10) |
C1—C2 | 1.386 (3) | O3W—H3WB | 0.850 (10) |
C1—C6 | 1.389 (2) | O4W—H4WA | 0.846 (10) |
C1—H1 | 0.9500 | O4W—H4WB | 0.837 (10) |
C2—C3 | 1.387 (3) | O5W—H5WA | 0.841 (10) |
C2—C7 | 1.519 (3) | O5W—H5WB | 0.844 (10) |
C3—C4 | 1.387 (3) | O6W—H6WA | 0.862 (10) |
C3—H3 | 0.9500 | O6W—H6WB | 0.855 (10) |
C4—C5 | 1.388 (3) | O7W—H7WA | 0.853 (10) |
C4—C8 | 1.508 (3) | O7W—H7WB | 0.850 (10) |
C5—C6 | 1.390 (3) | O8W—H8WA | 0.849 (10) |
C5—H5 | 0.9500 | O8W—H8WB | 0.835 (10) |
C9—C13 | 1.385 (3) | ||
O4W—Ni1—O3W | 91.75 (7) | O11—C7—C2 | 117.99 (16) |
O4W—Ni1—O2W | 87.18 (6) | O12—C7—C2 | 117.19 (17) |
O3W—Ni1—O2W | 91.56 (6) | O14—C8—O13 | 123.82 (17) |
O4W—Ni1—N1 | 175.40 (7) | O14—C8—C4 | 118.55 (16) |
O3W—Ni1—N1 | 92.85 (7) | O13—C8—C4 | 117.63 (16) |
O2W—Ni1—N1 | 92.55 (6) | N1—C9—C13 | 122.2 (2) |
O4W—Ni1—O1W | 85.27 (6) | N1—C9—H9 | 118.9 |
O3W—Ni1—O1W | 86.63 (6) | C13—C9—H9 | 118.9 |
O2W—Ni1—O1W | 172.17 (5) | N1—C10—C11 | 122.65 (17) |
N1—Ni1—O1W | 95.14 (6) | N1—C10—C14 | 115.33 (15) |
O4W—Ni1—N2 | 96.62 (6) | C11—C10—C14 | 121.90 (18) |
O3W—Ni1—N2 | 170.98 (6) | C10—C11—C12 | 118.0 (2) |
O2W—Ni1—N2 | 92.22 (6) | C10—C11—H11 | 121.0 |
N1—Ni1—N2 | 78.80 (7) | C12—C11—H11 | 121.0 |
O1W—Ni1—N2 | 90.69 (6) | C13—C12—C11 | 119.31 (19) |
C9—N1—C10 | 118.40 (16) | C13—C12—H12 | 120.3 |
C9—N1—Ni1 | 127.97 (14) | C11—C12—H12 | 120.3 |
C10—N1—Ni1 | 113.51 (12) | C12—C13—C9 | 119.36 (19) |
C14—N2—C6 | 118.84 (16) | C12—C13—H13 | 120.3 |
C14—N2—Ni1 | 113.22 (12) | C9—C13—H13 | 120.3 |
C6—N2—Ni1 | 127.68 (11) | N2—C14—C10 | 118.80 (17) |
C2—C1—C6 | 119.95 (17) | N2—C14—H27A | 120.6 |
C2—C1—H1 | 120.0 | C10—C14—H27A | 120.6 |
C6—C1—H1 | 120.0 | Ni1—O1W—H1WA | 120.9 (19) |
C1—C2—C3 | 119.46 (16) | Ni1—O1W—H1WB | 114.8 (19) |
C1—C2—C7 | 120.43 (17) | H1WA—O1W—H1WB | 107 (3) |
C3—C2—C7 | 120.11 (16) | Ni1—O2W—H2WA | 114.6 (16) |
C4—C3—C2 | 120.86 (17) | Ni1—O2W—H2WB | 112.4 (18) |
C4—C3—H3 | 119.6 | H2WA—O2W—H2WB | 105 (2) |
C2—C3—H3 | 119.6 | Ni1—O3W—H3WA | 119.3 (19) |
C3—C4—C5 | 119.62 (17) | Ni1—O3W—H3WB | 115.6 (19) |
C3—C4—C8 | 119.86 (17) | H3WA—O3W—H3WB | 112 (3) |
C5—C4—C8 | 120.52 (16) | Ni1—O4W—H4WA | 118.7 (16) |
C4—C5—C6 | 119.66 (16) | Ni1—O4W—H4WB | 129.1 (19) |
C4—C5—H5 | 120.2 | H4WA—O4W—H4WB | 105 (2) |
C6—C5—H5 | 120.2 | H5WA—O5W—H5WB | 106 (3) |
C1—C6—C5 | 120.42 (17) | H6WA—O6W—H6WB | 94 (6) |
C1—C6—N2 | 118.58 (16) | H7WA—O7W—H7WB | 111 (3) |
C5—C6—N2 | 120.93 (15) | H8WA—O8W—H8WB | 97 (3) |
O11—C7—O12 | 124.81 (17) | ||
O3W—Ni1—N1—C9 | 11.52 (18) | C14—N2—C6—C1 | 137.78 (19) |
O2W—Ni1—N1—C9 | −80.16 (18) | Ni1—N2—C6—C1 | −48.5 (2) |
O1W—Ni1—N1—C9 | 98.39 (18) | C14—N2—C6—C5 | −45.3 (3) |
N2—Ni1—N1—C9 | −171.92 (19) | Ni1—N2—C6—C5 | 128.36 (16) |
O3W—Ni1—N1—C10 | −172.54 (14) | C1—C2—C7—O11 | 0.5 (3) |
O2W—Ni1—N1—C10 | 95.77 (14) | C3—C2—C7—O11 | −179.73 (19) |
O1W—Ni1—N1—C10 | −85.67 (14) | C1—C2—C7—O12 | −178.20 (17) |
N2—Ni1—N1—C10 | 4.02 (13) | C3—C2—C7—O12 | 1.6 (3) |
O4W—Ni1—N2—C14 | 175.05 (15) | C3—C4—C8—O14 | −12.9 (3) |
O2W—Ni1—N2—C14 | −97.54 (15) | C5—C4—C8—O14 | 167.08 (18) |
N1—Ni1—N2—C14 | −5.37 (14) | C3—C4—C8—O13 | 167.79 (18) |
O1W—Ni1—N2—C14 | 89.73 (15) | C5—C4—C8—O13 | −12.3 (3) |
O4W—Ni1—N2—C6 | 1.06 (16) | C10—N1—C9—C13 | −0.5 (3) |
O2W—Ni1—N2—C6 | 88.47 (15) | Ni1—N1—C9—C13 | 175.25 (16) |
N1—Ni1—N2—C6 | −179.37 (16) | C9—N1—C10—C11 | −2.0 (3) |
O1W—Ni1—N2—C6 | −84.26 (15) | Ni1—N1—C10—C11 | −178.38 (15) |
C6—C1—C2—C3 | −0.4 (3) | C9—N1—C10—C14 | 174.02 (18) |
C6—C1—C2—C7 | 179.43 (17) | Ni1—N1—C10—C14 | −2.3 (2) |
C1—C2—C3—C4 | −0.6 (3) | N1—C10—C11—C12 | 2.5 (3) |
C7—C2—C3—C4 | 179.55 (17) | C14—C10—C11—C12 | −173.3 (2) |
C2—C3—C4—C5 | 0.2 (3) | C10—C11—C12—C13 | −0.5 (3) |
C2—C3—C4—C8 | −179.80 (19) | C11—C12—C13—C9 | −1.9 (3) |
C3—C4—C5—C6 | 1.2 (3) | N1—C9—C13—C12 | 2.5 (3) |
C8—C4—C5—C6 | −178.80 (17) | C6—N2—C14—C10 | −179.54 (17) |
C2—C1—C6—C5 | 1.8 (3) | Ni1—N2—C14—C10 | 5.9 (2) |
C2—C1—C6—N2 | 178.69 (16) | N1—C10—C14—N2 | −2.5 (3) |
C4—C5—C6—C1 | −2.2 (3) | C11—C10—C14—N2 | 173.6 (2) |
C4—C5—C6—N2 | −179.01 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1WA···O8W | 0.84 (1) | 1.88 (1) | 2.715 (3) | 176 (3) |
O1W—H1WB···O12i | 0.85 (1) | 1.89 (1) | 2.739 (2) | 177 (3) |
O2W—H2WA···O12ii | 0.85 (1) | 1.83 (1) | 2.6630 (18) | 170 (2) |
O2W—H2WB···O14iii | 0.84 (1) | 1.89 (1) | 2.719 (2) | 170 (2) |
O3W—H3WA···O13iii | 0.84 (1) | 1.89 (1) | 2.733 (2) | 178 (3) |
O3W—H3WB···O6W | 0.85 (1) | 1.95 (1) | 2.798 (3) | 176 (3) |
O4W—H4WA···O7Wiv | 0.85 (1) | 1.96 (1) | 2.751 (2) | 156 (2) |
O4W—H4WB···O5Wv | 0.84 (1) | 1.99 (1) | 2.808 (2) | 168 (3) |
O5W—H5WB···O13 | 0.84 (1) | 1.98 (1) | 2.801 (2) | 166 (3) |
O5W—H5WA···O11vi | 0.84 (1) | 1.96 (1) | 2.789 (2) | 167 (3) |
O7W—H7WB···O13vii | 0.85 (1) | 1.97 (1) | 2.797 (3) | 165 (4) |
O7W—H7WA···O11 | 0.85 (1) | 1.85 (1) | 2.685 (2) | 167 (3) |
O6W—H6WB···O2Wiv | 0.86 (1) | 2.42 (4) | 3.157 (2) | 145 (6) |
O6W—H6WA···O7Wiv | 0.86 (1) | 1.94 (2) | 2.769 (3) | 160 (4) |
O8W—H8WB···O14i | 0.84 (1) | 2.08 (3) | 2.750 (2) | 137 (3) |
O8W—H8WA···O5W | 0.85 (1) | 2.02 (1) | 2.856 (3) | 171 (4) |
Symmetry codes: (i) x−1/2, −y, z−1/2; (ii) x−1/2, −y+1, z−1/2; (iii) x−1, y, z; (iv) x, y−1, z; (v) x−1/2, −y, z+1/2; (vi) x+1/2, −y, z−1/2; (vii) x−1/2, −y+1, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [Ni(C14H8N2O4)(H2O)4]·4H2O |
Mr | 471.06 |
Crystal system, space group | Monoclinic, Pn |
Temperature (K) | 153 |
a, b, c (Å) | 10.998 (2), 7.4536 (15), 12.271 (3) |
β (°) | 95.86 (3) |
V (Å3) | 1000.7 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.03 |
Crystal size (mm) | 0.28 × 0.25 × 0.23 |
Data collection | |
Diffractometer | Bruker APEXII CCD |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2001) |
Tmin, Tmax | 0.76, 0.79 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4844, 3243, 3186 |
Rint | 0.011 |
(sin θ/λ)max (Å−1) | 0.594 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.018, 0.044, 1.00 |
No. of reflections | 3243 |
No. of parameters | 326 |
No. of restraints | 18 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.17, −0.32 |
Absolute structure | Flack (1983), 1482 Friedel pairs |
Absolute structure parameter | 0.012 (7) |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1WA···O8W | 0.842 (10) | 1.875 (11) | 2.715 (3) | 176 (3) |
O1W—H1WB···O12i | 0.853 (10) | 1.887 (10) | 2.739 (2) | 177 (3) |
O2W—H2WA···O12ii | 0.846 (10) | 1.826 (11) | 2.6630 (18) | 170 (2) |
O2W—H2WB···O14iii | 0.843 (10) | 1.886 (11) | 2.719 (2) | 170 (2) |
O3W—H3WA···O13iii | 0.842 (10) | 1.891 (10) | 2.733 (2) | 178 (3) |
O3W—H3WB···O6W | 0.850 (10) | 1.950 (11) | 2.798 (3) | 176 (3) |
O4W—H4WA···O7Wiv | 0.846 (10) | 1.959 (13) | 2.751 (2) | 156 (2) |
O4W—H4WB···O5Wv | 0.837 (10) | 1.985 (12) | 2.808 (2) | 168 (3) |
O5W—H5WB···O13 | 0.844 (10) | 1.976 (12) | 2.801 (2) | 166 (3) |
O5W—H5WA···O11vi | 0.841 (10) | 1.964 (13) | 2.789 (2) | 167 (3) |
O7W—H7WB···O13vii | 0.850 (10) | 1.968 (14) | 2.797 (3) | 165 (4) |
O7W—H7WA···O11 | 0.853 (10) | 1.847 (12) | 2.685 (2) | 167 (3) |
O6W—H6WB···O2Wiv | 0.855 (10) | 2.42 (4) | 3.157 (2) | 145 (6) |
O6W—H6WA···O7Wiv | 0.862 (10) | 1.942 (17) | 2.769 (3) | 160 (4) |
O8W—H8WB···O14i | 0.835 (10) | 2.08 (3) | 2.750 (2) | 137 (3) |
O8W—H8WA···O5W | 0.849 (10) | 2.015 (12) | 2.856 (3) | 171 (4) |
Symmetry codes: (i) x−1/2, −y, z−1/2; (ii) x−1/2, −y+1, z−1/2; (iii) x−1, y, z; (iv) x, y−1, z; (v) x−1/2, −y, z+1/2; (vi) x+1/2, −y, z−1/2; (vii) x−1/2, −y+1, z+1/2. |
Acknowledgements
This work was supported by the Ninth Technology Fund for Postgraduates of Beijing University of Technology (ykj-2011-5116), the National Natural Science Foundation of China (No. 21075114) and the Special Environmental Protection Fund for Public Welfare Projects (201009015).
References
Bruker (2008). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Buffin, B. P., Squattrito, P. J. & Ojewole, A. O. (2004). Inorg. Chem. Commun. 7, 14–17. Web of Science CSD CrossRef CAS Google Scholar
Datta, A., Dey, D. K., Hwang, W. S., Matsushita, T. & Rosair, G. (2005). J. Chem. Res. 8, 502–504. CrossRef Google Scholar
Flack, H. D. (1983). Acta Cryst. A39, 876–881. CrossRef CAS Web of Science IUCr Journals Google Scholar
Jiang, C. F., Liang, F. P., Li, Y., Wang, X. J., Chen, Z. L. & Bian, H. D. (2007). J. Mol. Struct. 842, 109–116. Web of Science CSD CrossRef CAS Google Scholar
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Schiff bases with carboxylic groups derived from pyridine 2-carboxaldehyde and amino carboxylic acids are a kind of multifunctional ligand having several potential coordination sites involving N and carboxylate oxygen atoms. The structural chemistry of the coordination compounds of Schiff bases involving some amino benzoic acids and amino acids have been studied (Buffin et al., 2004; Datta et al., 2005; Jiang et al., 2007). However, that of 5-(pyridin-2-ylmethyleneamino)isophthalic acid created by condensation of pyridine 2-carboxaldehyde and 5-aminoisophthalic acid has not been reported. Herein, we describe the synthesis and structural characterization of a new nickel complex coordinated by 5-(pyridin-2-ylmethyleneamino)isophthalic acid. The structure is built up from a neutral mononuclear complex [Ni(C14H8N2O4)(H2O)4] and from four uncoordinated water molecules. Each Ni(II) ion is six-coordinated by two N atoms of the Schiff base ligand and four O atoms from four water molecules, forming a slightly distorted octahedral coordination geometry. The ligand adopts N,N'-bidentate coordination mode with two N atoms chelating Ni(II) in cis-configuration. In the complex, the two Ni—N bond lengths differ modestly, with Ni—N (pyridine) = 2.0753 (16) Å and Ni—N (azomethine) = 2.1048 (16) Å. Likewise, the four Ni—O bonds vary little, from 2.0500 (15) to 2.0822 (15) Å. The eight independent water molecules form 16 different 16 O—H···O hydrogen bonds with O···O distances between 2.6630 (18) Å and 3.157 (2) Å (Table 1). They link the constituents into a three-dimensional supramolecular structure. Nine of these hydrogen bonds are accepted by carboxyl oxygen atoms, while seven are accepted by the water molecules (with one exception by non-coordinating water molecules, cf. Table 1).