metal-organic compounds
Di-μ-adipato-κ4O1:O6-bis{aqua[5,6-diphenyl-3-(pyridin-2-yl)-1,2,4-triazine-κ2N2,N3]copper(II)}
aCenter of Applied Solid State Chemistry Research, Ningbo University, Ningbo 315211, People's Republic of China
*Correspondence e-mail: xuwei@nbu.edu.cn
In the centrosymmetric binuclear title complex, [Cu2(C6H8O4)2(C20H14N4)2(H2O)2] or [Cu2(PDPT)2(C6H8O4)2(H2O)2] (PDPT = 3-(2-pyridyl)-5,6-diphenyl-1,2,4-triazine, the Cu atom displays a distorted square-pyramidal coordination environment with the basal plane occupied by two PDPT N atoms and two O atoms from different adipate dianions while a water molecule is located at the apical position. Of the two water H atoms, one participates in an intramolecular hydrogen bond whereas the second participates in an intermolecular hydrogen bond, which leads to the formation of a chain along [010].
Related literature
For the biological activity and applications of triazines, see: Garcia et al. (1995); Mashaly et al. (1999); Croot & Hunter (2000); Soudi et al. (2005); Kawamichi et al. (2009).
Experimental
Crystal data
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Refinement
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Data collection: RAPID-AUTO (Rigaku, 1998); cell RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536812025676/rk2363sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812025676/rk2363Isup2.hkl
Addition of 2.0 mL (1.0 M) NaOH to a stirred aqueous of 0.172 g (1.0 mmol) CuCl2.2H2O in 5.0 mL H2O yield a blue precipitate, which was then separated by centrifugation, followed by washing with double–distilled water until no detectable Cl- anions in supernatant. The precipitate was added to a stirred ethanolic aqueous solution of 0.146 g (1.0 mmol) adipic acid in 20 mL EtOH/H2O (v:v = 1: 1). To the resulting suspension was added 0.310 g (1.0 mmol) 3–(2–pyridyl)–5,6–diphenyl–1,2,4–triazine (PDPT). The mixture was further stirred for approximately 15 min and the insoluble solid was filtered off. The filtrate (pH = 6.5) was allowed to stand at room temperature. Slow evaporation for two weeks afforded a small amount of brown crystals (yield 58% based on the initial CuCl2.2H2O input).
All H atoms bound to C were position geometrically and refined as riding, with C—H = 0.93Å and 0.97Å with Uiso(H) = 1.2Ueq(C). The H atoms attached to O were located in difference Fourier maps and refined freely with Uiso(H) = 1.5Ueq(O).
Research on coordination chemistry of triazine–derived ligands has progressed very rapidly during the past two decades (Kawamichi et al., 2009). The 1,2,4–triazine compounds are well–known in natural materials and show intersting biological, pharmacological and medicinal properties (Garcia et al., 1995). The 3–(2–pyridyl)–5,6–diphenyl–1,2,4–triazine (PDPT) represents a principal class of N–donor heterocyclic ligands that exhibit interesting pharmacological properties such as blood platelet aggregation inhibition, significant activity towards leukemia and ovarian cancer, and anti–HIV activity (Mashaly et al., 1999; Soudi et al., 2005). It also has been widely used as an sensitive reagent for the determination of Fe(II) by spectrophotometric methods, in natural and waste water (Croot & Hunter, 2000). The title complex, was recently prepared and its
is reported here.The title compound
is composed of centrosymmetric binuclear [Cu2(H2O)2(PDPT)2(C6H8O4)2] complex molecule (Fig. 1). The dinuclear complex molecules are centered at the crystallographic 2e positions. Each Cu atom is coordinated by two N atoms of the chelating PDPT ligand and three O atoms of one H2O molecule and two bis–monodentate adipato ligands to form a slightly distorted square–pyramidal coordination with H2O molecule located at the apical position (d(Cu–N) = 2.028 (3)Å, 2.029 (3)Å, the basal d(Cu–O) = 1.921 (3)Å, 1.961 (3)Å, the axial d(Cu–O) = 2.375 (3)Å). Through the adipato ligands, the square–pyramidally coordinated Cu atoms are linked to form centrosymmetric dinuclear. As expected, the Cu atom is slightly shifted toward the apical water O atom by 0.026 (2)Å from the least–squares plane defined by the four equatorial coordinating atoms. The triazine ring adopts a slight twist conformation. The dihedral angle between the two phenyl rings is 61.9 (2)°.As shown in the Fig. 2 and Table 1, within the
the water molecule O5 forms a strong intramolecular hydrogen bond to the uncoordinated carboxyl O3i with O5···O3i = 2.721 (3)Å and angle O5—H5A···O3i = 161°. Moreover, it forms an intermolecular hydrogen bond to the coordinated carboxyl O1ii atoms with O5···O1ii = 2.878 (4)Å and angle O5—H5B···O1ii = 167° to connect the dinuclear complexes along the [0 1 0] direction. Symmetry codes: (i) -x, -y, -z+1; (ii) -x, -y+1, -z+1.For the biological activity and applications of triazines, see: Garcia et al. (1995); Mashaly et al. (1999); Croot & Hunter (2000); Soudi et al. (2005); Kawamichi et al. (2009).
Data collection: RAPID-AUTO (Rigaku, 1998); cell
RAPID-AUTO (Rigaku, 1998); data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).[Cu2(C6H8O4)2(C20H14N4)2(H2O)2] | Z = 1 |
Mr = 1072.08 | F(000) = 554 |
Triclinic, P1 | Dx = 1.501 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.4825 (19) Å | Cell parameters from 8025 reflections |
b = 10.616 (2) Å | θ = 3.3–27.5° |
c = 13.080 (3) Å | µ = 0.97 mm−1 |
α = 78.96 (3)° | T = 295 K |
β = 68.76 (3)° | Plate, brown |
γ = 76.85 (3)° | 0.30 × 0.19 × 0.11 mm |
V = 1186.4 (5) Å3 |
Rigaku R-AXIS RAPID CCD diffractometer | 5295 independent reflections |
Radiation source: fine-focus sealed tube | 3207 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.061 |
ω–scans | θmax = 27.5°, θmin = 3.3° |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | h = −12→11 |
Tmin = 0.756, Tmax = 0.863 | k = −13→13 |
11646 measured reflections | l = −16→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.057 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.135 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0516P)2 + 0.8435P] where P = (Fo2 + 2Fc2)/3 |
5295 reflections | (Δ/σ)max < 0.001 |
333 parameters | Δρmax = 0.61 e Å−3 |
3 restraints | Δρmin = −0.51 e Å−3 |
[Cu2(C6H8O4)2(C20H14N4)2(H2O)2] | γ = 76.85 (3)° |
Mr = 1072.08 | V = 1186.4 (5) Å3 |
Triclinic, P1 | Z = 1 |
a = 9.4825 (19) Å | Mo Kα radiation |
b = 10.616 (2) Å | µ = 0.97 mm−1 |
c = 13.080 (3) Å | T = 295 K |
α = 78.96 (3)° | 0.30 × 0.19 × 0.11 mm |
β = 68.76 (3)° |
Rigaku R-AXIS RAPID CCD diffractometer | 5295 independent reflections |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | 3207 reflections with I > 2σ(I) |
Tmin = 0.756, Tmax = 0.863 | Rint = 0.061 |
11646 measured reflections |
R[F2 > 2σ(F2)] = 0.057 | 3 restraints |
wR(F2) = 0.135 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.61 e Å−3 |
5295 reflections | Δρmin = −0.51 e Å−3 |
333 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cu1 | 0.24237 (6) | 0.28612 (5) | 0.46540 (4) | 0.03879 (17) | |
N1 | 0.4452 (4) | 0.2512 (3) | 0.4938 (3) | 0.0374 (8) | |
N2 | 0.3453 (3) | 0.4301 (3) | 0.3587 (3) | 0.0333 (7) | |
N3 | 0.5595 (3) | 0.5336 (3) | 0.3071 (3) | 0.0343 (7) | |
N4 | 0.3041 (3) | 0.4987 (3) | 0.2743 (3) | 0.0355 (7) | |
O1 | 0.0833 (3) | 0.3122 (3) | 0.3970 (2) | 0.0390 (6) | |
O2 | 0.2814 (3) | 0.1907 (3) | 0.2883 (3) | 0.0488 (7) | |
O3 | 0.0418 (3) | −0.2164 (3) | 0.3245 (3) | 0.0570 (8) | |
O4 | −0.1845 (3) | −0.1321 (3) | 0.4379 (3) | 0.0488 (8) | |
O5 | 0.0969 (3) | 0.4299 (3) | 0.5999 (3) | 0.0495 (8) | |
H5A | 0.042 (4) | 0.375 (3) | 0.634 (4) | 0.074* | |
H5B | 0.040 (4) | 0.501 (2) | 0.593 (4) | 0.074* | |
C1 | 0.4946 (5) | 0.1514 (4) | 0.5589 (3) | 0.0436 (10) | |
H1A | 0.4325 | 0.0892 | 0.5955 | 0.052* | |
C2 | 0.6347 (5) | 0.1373 (4) | 0.5739 (3) | 0.0460 (11) | |
H2A | 0.6684 | 0.0647 | 0.6170 | 0.055* | |
C3 | 0.7228 (5) | 0.2320 (4) | 0.5244 (4) | 0.0471 (11) | |
H3A | 0.8152 | 0.2262 | 0.5362 | 0.057* | |
C4 | 0.6740 (4) | 0.3366 (4) | 0.4566 (3) | 0.0404 (9) | |
H4A | 0.7322 | 0.4020 | 0.4221 | 0.048* | |
C5 | 0.5364 (4) | 0.3401 (4) | 0.4422 (3) | 0.0333 (8) | |
C6 | 0.7323 (4) | 0.7259 (4) | 0.1838 (4) | 0.0414 (10) | |
H6A | 0.7876 | 0.6483 | 0.2068 | 0.050* | |
C7 | 0.7968 (5) | 0.8365 (4) | 0.1501 (4) | 0.0495 (11) | |
H7A | 0.8964 | 0.8330 | 0.1486 | 0.059* | |
C8 | 0.7152 (5) | 0.9530 (4) | 0.1183 (4) | 0.0520 (12) | |
H8A | 0.7591 | 1.0279 | 0.0959 | 0.062* | |
C9 | 0.5676 (5) | 0.9572 (4) | 0.1200 (4) | 0.0497 (11) | |
H9A | 0.5117 | 1.0358 | 0.0996 | 0.060* | |
C10 | 0.5033 (5) | 0.8481 (4) | 0.1509 (4) | 0.0419 (10) | |
H10A | 0.4046 | 0.8525 | 0.1502 | 0.050* | |
C11 | 0.5839 (4) | 0.7290 (3) | 0.1840 (3) | 0.0331 (8) | |
C12 | 0.2046 (4) | 0.6241 (4) | 0.1017 (4) | 0.0423 (10) | |
H12A | 0.1287 | 0.6023 | 0.1676 | 0.051* | |
C13 | 0.1724 (5) | 0.6510 (4) | 0.0040 (4) | 0.0492 (11) | |
H13A | 0.0761 | 0.6445 | 0.0043 | 0.059* | |
C14 | 0.2816 (5) | 0.6872 (4) | −0.0934 (4) | 0.0510 (11) | |
H14A | 0.2587 | 0.7071 | −0.1586 | 0.061* | |
C15 | 0.4258 (5) | 0.6942 (4) | −0.0942 (3) | 0.0444 (10) | |
H15A | 0.4999 | 0.7191 | −0.1601 | 0.053* | |
C16 | 0.4600 (5) | 0.6642 (4) | 0.0026 (3) | 0.0379 (9) | |
H16A | 0.5579 | 0.6675 | 0.0011 | 0.045* | |
C17 | 0.3498 (4) | 0.6293 (3) | 0.1022 (3) | 0.0323 (8) | |
C18 | 0.4794 (4) | 0.4412 (3) | 0.3645 (3) | 0.0308 (8) | |
C19 | 0.5105 (4) | 0.6140 (3) | 0.2307 (3) | 0.0320 (8) | |
C20 | 0.3880 (4) | 0.5838 (3) | 0.2046 (3) | 0.0322 (8) | |
C21 | 0.1506 (4) | 0.2554 (4) | 0.3093 (3) | 0.0363 (9) | |
C22 | 0.0629 (5) | 0.2733 (4) | 0.2294 (4) | 0.0424 (10) | |
H22A | −0.0456 | 0.2783 | 0.2717 | 0.051* | |
H22B | 0.0762 | 0.3559 | 0.1834 | 0.051* | |
C23 | 0.1097 (5) | 0.1676 (4) | 0.1553 (3) | 0.0441 (10) | |
H23A | 0.2148 | 0.1694 | 0.1071 | 0.053* | |
H23B | 0.0456 | 0.1878 | 0.1090 | 0.053* | |
C24 | 0.0991 (5) | 0.0304 (4) | 0.2136 (4) | 0.0525 (11) | |
H24A | 0.1160 | −0.0266 | 0.1590 | 0.063* | |
H24B | 0.1818 | 0.0018 | 0.2443 | 0.063* | |
C25 | −0.0463 (5) | 0.0133 (4) | 0.3027 (4) | 0.0595 (13) | |
H25A | −0.1292 | 0.0445 | 0.2724 | 0.071* | |
H25B | −0.0616 | 0.0685 | 0.3583 | 0.071* | |
C26 | −0.0602 (5) | −0.1238 (4) | 0.3594 (3) | 0.0393 (9) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.0376 (3) | 0.0390 (3) | 0.0392 (3) | −0.0141 (2) | −0.0134 (2) | 0.0069 (2) |
N1 | 0.0387 (18) | 0.0370 (18) | 0.034 (2) | −0.0073 (14) | −0.0125 (15) | 0.0035 (15) |
N2 | 0.0339 (16) | 0.0338 (17) | 0.0325 (19) | −0.0103 (13) | −0.0124 (14) | 0.0033 (14) |
N3 | 0.0330 (17) | 0.0318 (17) | 0.036 (2) | −0.0066 (13) | −0.0103 (14) | −0.0015 (14) |
N4 | 0.0364 (17) | 0.0380 (18) | 0.0308 (19) | −0.0067 (14) | −0.0130 (14) | 0.0026 (14) |
O1 | 0.0372 (14) | 0.0379 (15) | 0.0414 (18) | −0.0135 (12) | −0.0097 (13) | −0.0023 (13) |
O2 | 0.0369 (16) | 0.0528 (18) | 0.058 (2) | −0.0044 (14) | −0.0162 (14) | −0.0125 (15) |
O3 | 0.0568 (19) | 0.0408 (17) | 0.061 (2) | −0.0117 (15) | −0.0073 (16) | 0.0011 (16) |
O4 | 0.0459 (17) | 0.0403 (16) | 0.050 (2) | −0.0119 (13) | −0.0076 (15) | 0.0081 (14) |
O5 | 0.0481 (18) | 0.0387 (16) | 0.056 (2) | −0.0060 (13) | −0.0129 (16) | −0.0035 (15) |
C1 | 0.045 (2) | 0.041 (2) | 0.037 (3) | −0.0053 (18) | −0.0106 (19) | 0.0029 (19) |
C2 | 0.045 (2) | 0.050 (3) | 0.035 (3) | 0.007 (2) | −0.016 (2) | −0.001 (2) |
C3 | 0.034 (2) | 0.062 (3) | 0.044 (3) | 0.000 (2) | −0.015 (2) | −0.010 (2) |
C4 | 0.038 (2) | 0.041 (2) | 0.043 (3) | −0.0060 (18) | −0.0153 (19) | −0.0050 (19) |
C5 | 0.035 (2) | 0.034 (2) | 0.029 (2) | −0.0043 (16) | −0.0095 (17) | −0.0043 (16) |
C6 | 0.037 (2) | 0.036 (2) | 0.048 (3) | −0.0079 (17) | −0.0110 (19) | −0.0018 (19) |
C7 | 0.045 (2) | 0.046 (2) | 0.060 (3) | −0.020 (2) | −0.012 (2) | −0.007 (2) |
C8 | 0.069 (3) | 0.037 (2) | 0.055 (3) | −0.027 (2) | −0.018 (2) | 0.001 (2) |
C9 | 0.068 (3) | 0.030 (2) | 0.054 (3) | −0.009 (2) | −0.026 (2) | 0.001 (2) |
C10 | 0.046 (2) | 0.033 (2) | 0.050 (3) | −0.0080 (17) | −0.019 (2) | −0.0043 (19) |
C11 | 0.037 (2) | 0.0273 (18) | 0.035 (2) | −0.0111 (15) | −0.0100 (17) | −0.0014 (16) |
C12 | 0.035 (2) | 0.050 (2) | 0.037 (2) | −0.0076 (18) | −0.0116 (18) | 0.0057 (19) |
C13 | 0.042 (2) | 0.058 (3) | 0.047 (3) | −0.004 (2) | −0.021 (2) | 0.001 (2) |
C14 | 0.064 (3) | 0.046 (3) | 0.039 (3) | 0.002 (2) | −0.023 (2) | 0.000 (2) |
C15 | 0.057 (3) | 0.036 (2) | 0.029 (2) | −0.0072 (19) | −0.002 (2) | −0.0014 (18) |
C16 | 0.040 (2) | 0.033 (2) | 0.037 (2) | −0.0084 (16) | −0.0085 (18) | −0.0025 (17) |
C17 | 0.041 (2) | 0.0256 (18) | 0.031 (2) | −0.0087 (15) | −0.0126 (17) | −0.0012 (16) |
C18 | 0.0319 (19) | 0.0302 (19) | 0.029 (2) | −0.0081 (15) | −0.0077 (16) | −0.0034 (16) |
C19 | 0.0287 (18) | 0.0308 (19) | 0.032 (2) | −0.0051 (15) | −0.0064 (16) | −0.0005 (16) |
C20 | 0.0288 (18) | 0.0264 (18) | 0.037 (2) | −0.0041 (15) | −0.0071 (16) | −0.0027 (16) |
C21 | 0.036 (2) | 0.031 (2) | 0.042 (3) | −0.0163 (17) | −0.0109 (18) | 0.0036 (18) |
C22 | 0.046 (2) | 0.038 (2) | 0.043 (3) | −0.0154 (18) | −0.017 (2) | 0.0094 (19) |
C23 | 0.049 (2) | 0.052 (3) | 0.034 (2) | −0.021 (2) | −0.016 (2) | 0.008 (2) |
C24 | 0.064 (3) | 0.048 (3) | 0.041 (3) | −0.020 (2) | −0.006 (2) | −0.007 (2) |
C25 | 0.059 (3) | 0.046 (3) | 0.062 (4) | −0.013 (2) | −0.007 (3) | −0.002 (2) |
C26 | 0.046 (2) | 0.034 (2) | 0.038 (3) | −0.0121 (18) | −0.014 (2) | −0.0003 (18) |
Cu1—O1 | 1.961 (3) | C8—C9 | 1.382 (6) |
Cu1—O4i | 1.921 (3) | C8—H8A | 0.9300 |
Cu1—O5 | 2.375 (3) | C9—C10 | 1.356 (6) |
Cu1—N1 | 2.029 (3) | C9—H9A | 0.9300 |
Cu1—N2 | 2.028 (3) | C10—C11 | 1.401 (5) |
N1—C1 | 1.336 (5) | C10—H10A | 0.9300 |
N1—C5 | 1.341 (5) | C11—C19 | 1.463 (5) |
N2—C18 | 1.333 (4) | C12—C13 | 1.382 (6) |
N2—N4 | 1.334 (4) | C12—C17 | 1.394 (5) |
N3—C18 | 1.321 (5) | C12—H12A | 0.9300 |
N3—C19 | 1.332 (4) | C13—C14 | 1.371 (6) |
N4—C20 | 1.329 (5) | C13—H13A | 0.9300 |
O1—C21 | 1.283 (5) | C14—C15 | 1.382 (6) |
O2—C21 | 1.235 (4) | C14—H14A | 0.9300 |
O3—C26 | 1.236 (5) | C15—C16 | 1.380 (6) |
O4—C26 | 1.260 (5) | C15—H15A | 0.9300 |
O4—Cu1i | 1.921 (3) | C16—C17 | 1.390 (5) |
O5—H5A | 0.829 (18) | C16—H16A | 0.9300 |
O5—H5B | 0.830 (18) | C17—C20 | 1.477 (5) |
C1—C2 | 1.383 (5) | C19—C20 | 1.438 (5) |
C1—H1A | 0.9300 | C21—C22 | 1.516 (5) |
C2—C3 | 1.367 (6) | C22—C23 | 1.508 (6) |
C2—H2A | 0.9300 | C22—H22A | 0.9700 |
C3—C4 | 1.385 (6) | C22—H22B | 0.9700 |
C3—H3A | 0.9300 | C23—C24 | 1.516 (6) |
C4—C5 | 1.376 (5) | C23—H23A | 0.9700 |
C4—H4A | 0.9300 | C23—H23B | 0.9700 |
C5—C18 | 1.481 (5) | C24—C25 | 1.470 (6) |
C6—C7 | 1.372 (6) | C24—H24A | 0.9700 |
C6—C11 | 1.399 (5) | C24—H24B | 0.9700 |
C6—H6A | 0.9300 | C25—C26 | 1.513 (6) |
C7—C8 | 1.378 (6) | C25—H25A | 0.9700 |
C7—H7A | 0.9300 | C25—H25B | 0.9700 |
O1—Cu1—O5 | 94.47 (11) | C13—C12—H12A | 119.7 |
O1—Cu1—N1 | 164.40 (13) | C17—C12—H12A | 119.7 |
O1—Cu1—N2 | 92.22 (11) | C14—C13—C12 | 120.4 (4) |
O4i—Cu1—O1 | 96.02 (12) | C14—C13—H13A | 119.8 |
O4i—Cu1—O5 | 94.45 (12) | C12—C13—H13A | 119.8 |
O4i—Cu1—N1 | 90.71 (12) | C13—C14—C15 | 119.8 (4) |
O4i—Cu1—N2 | 168.98 (12) | C13—C14—H14A | 120.1 |
N1—Cu1—O5 | 99.04 (12) | C15—C14—H14A | 120.1 |
N2—Cu1—O5 | 92.19 (12) | C16—C15—C14 | 120.1 (4) |
N2—Cu1—N1 | 79.55 (12) | C16—C15—H15A | 120.0 |
C1—N1—C5 | 117.8 (3) | C14—C15—H15A | 120.0 |
C1—N1—Cu1 | 126.9 (3) | C15—C16—C17 | 120.8 (4) |
C5—N1—Cu1 | 115.3 (2) | C15—C16—H16A | 119.6 |
C18—N2—N4 | 117.7 (3) | C17—C16—H16A | 119.6 |
C18—N2—Cu1 | 115.4 (2) | C16—C17—C12 | 118.3 (3) |
N4—N2—Cu1 | 126.0 (2) | C16—C17—C20 | 121.7 (3) |
C18—N3—C19 | 117.8 (3) | C12—C17—C20 | 119.6 (3) |
C20—N4—N2 | 120.5 (3) | N3—C18—N2 | 124.6 (3) |
C21—O1—Cu1 | 104.0 (2) | N3—C18—C5 | 120.5 (3) |
C26—O4—Cu1i | 126.9 (3) | N2—C18—C5 | 114.9 (3) |
Cu1—O5—H5A | 90 (4) | N3—C19—C20 | 118.0 (3) |
Cu1—O5—H5B | 129 (4) | N3—C19—C11 | 115.9 (3) |
H5A—O5—H5B | 108 (3) | C20—C19—C11 | 126.0 (3) |
N1—C1—C2 | 122.4 (4) | N4—C20—C19 | 118.7 (3) |
N1—C1—H1A | 118.8 | N4—C20—C17 | 114.1 (3) |
C2—C1—H1A | 118.8 | C19—C20—C17 | 127.0 (3) |
C3—C2—C1 | 118.8 (4) | O2—C21—O1 | 122.7 (4) |
C3—C2—H2A | 120.6 | O2—C21—C22 | 120.5 (4) |
C1—C2—H2A | 120.6 | O1—C21—C22 | 116.8 (3) |
C2—C3—C4 | 119.8 (4) | C23—C22—C21 | 115.3 (3) |
C2—C3—H3A | 120.1 | C23—C22—H22A | 108.5 |
C4—C3—H3A | 120.1 | C21—C22—H22A | 108.5 |
C5—C4—C3 | 117.6 (4) | C23—C22—H22B | 108.5 |
C5—C4—H4A | 121.2 | C21—C22—H22B | 108.5 |
C3—C4—H4A | 121.2 | H22A—C22—H22B | 107.5 |
N1—C5—C4 | 123.4 (3) | C22—C23—C24 | 115.8 (4) |
N1—C5—C18 | 114.3 (3) | C22—C23—H23A | 108.3 |
C4—C5—C18 | 122.2 (4) | C24—C23—H23A | 108.3 |
C7—C6—C11 | 120.4 (4) | C22—C23—H23B | 108.3 |
C7—C6—H6A | 119.8 | C24—C23—H23B | 108.3 |
C11—C6—H6A | 119.8 | H23A—C23—H23B | 107.4 |
C6—C7—C8 | 120.6 (4) | C25—C24—C23 | 116.0 (4) |
C6—C7—H7A | 119.7 | C25—C24—H24A | 108.3 |
C8—C7—H7A | 119.7 | C23—C24—H24A | 108.3 |
C7—C8—C9 | 119.3 (4) | C25—C24—H24B | 108.3 |
C7—C8—H8A | 120.3 | C23—C24—H24B | 108.3 |
C9—C8—H8A | 120.3 | H24A—C24—H24B | 107.4 |
C10—C9—C8 | 120.9 (4) | C24—C25—C26 | 116.6 (4) |
C10—C9—H9A | 119.6 | C24—C25—H25A | 108.2 |
C8—C9—H9A | 119.6 | C26—C25—H25A | 108.2 |
C9—C10—C11 | 120.7 (4) | C24—C25—H25B | 108.2 |
C9—C10—H10A | 119.6 | C26—C25—H25B | 108.2 |
C11—C10—H10A | 119.6 | H25A—C25—H25B | 107.3 |
C6—C11—C10 | 118.1 (3) | O3—C26—O4 | 125.7 (4) |
C6—C11—C19 | 119.8 (3) | O3—C26—C25 | 120.3 (4) |
C10—C11—C19 | 121.6 (3) | O4—C26—C25 | 113.9 (4) |
C13—C12—C17 | 120.5 (4) |
Symmetry code: (i) −x, −y, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5A···O3i | 0.83 | 1.92 | 2.721 (3) | 161 |
O5—H5B···O1ii | 0.83 | 2.06 | 2.878 (4) | 167 |
Symmetry codes: (i) −x, −y, −z+1; (ii) −x, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Cu2(C6H8O4)2(C20H14N4)2(H2O)2] |
Mr | 1072.08 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 295 |
a, b, c (Å) | 9.4825 (19), 10.616 (2), 13.080 (3) |
α, β, γ (°) | 78.96 (3), 68.76 (3), 76.85 (3) |
V (Å3) | 1186.4 (5) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 0.97 |
Crystal size (mm) | 0.30 × 0.19 × 0.11 |
Data collection | |
Diffractometer | Rigaku R-AXIS RAPID CCD |
Absorption correction | Multi-scan (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.756, 0.863 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11646, 5295, 3207 |
Rint | 0.061 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.057, 0.135, 1.02 |
No. of reflections | 5295 |
No. of parameters | 333 |
No. of restraints | 3 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.61, −0.51 |
Computer programs: RAPID-AUTO (Rigaku, 1998), CrystalStructure (Rigaku/MSC, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5A···O3i | 0.83 | 1.92 | 2.721 (3) | 161 |
O5—H5B···O1ii | 0.83 | 2.06 | 2.878 (4) | 167 |
Symmetry codes: (i) −x, −y, −z+1; (ii) −x, −y+1, −z+1. |
Acknowledgements
This project was sponsored by the K. C. Wong Magna Fund in Ningbo University.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Research on coordination chemistry of triazine–derived ligands has progressed very rapidly during the past two decades (Kawamichi et al., 2009). The 1,2,4–triazine compounds are well–known in natural materials and show intersting biological, pharmacological and medicinal properties (Garcia et al., 1995). The 3–(2–pyridyl)–5,6–diphenyl–1,2,4–triazine (PDPT) represents a principal class of N–donor heterocyclic ligands that exhibit interesting pharmacological properties such as blood platelet aggregation inhibition, significant activity towards leukemia and ovarian cancer, and anti–HIV activity (Mashaly et al., 1999; Soudi et al., 2005). It also has been widely used as an sensitive reagent for the determination of Fe(II) by spectrophotometric methods, in natural and waste water (Croot & Hunter, 2000). The title complex, was recently prepared and its crystal structure is reported here.
The title compound crystal structure is composed of centrosymmetric binuclear [Cu2(H2O)2(PDPT)2(C6H8O4)2] complex molecule (Fig. 1). The dinuclear complex molecules are centered at the crystallographic 2e positions. Each Cu atom is coordinated by two N atoms of the chelating PDPT ligand and three O atoms of one H2O molecule and two bis–monodentate adipato ligands to form a slightly distorted square–pyramidal coordination with H2O molecule located at the apical position (d(Cu–N) = 2.028 (3)Å, 2.029 (3)Å, the basal d(Cu–O) = 1.921 (3)Å, 1.961 (3)Å, the axial d(Cu–O) = 2.375 (3)Å). Through the adipato ligands, the square–pyramidally coordinated Cu atoms are linked to form centrosymmetric dinuclear. As expected, the Cu atom is slightly shifted toward the apical water O atom by 0.026 (2)Å from the least–squares plane defined by the four equatorial coordinating atoms. The triazine ring adopts a slight twist conformation. The dihedral angle between the two phenyl rings is 61.9 (2)°.
As shown in the Fig. 2 and Table 1, within the crystal structure, the water molecule O5 forms a strong intramolecular hydrogen bond to the uncoordinated carboxyl O3i with O5···O3i = 2.721 (3)Å and angle O5—H5A···O3i = 161°. Moreover, it forms an intermolecular hydrogen bond to the coordinated carboxyl O1ii atoms with O5···O1ii = 2.878 (4)Å and angle O5—H5B···O1ii = 167° to connect the dinuclear complexes along the [0 1 0] direction. Symmetry codes: (i) -x, -y, -z+1; (ii) -x, -y+1, -z+1.