organic compounds
9-[(2-Methoxybenzyl)amino]-5-(3,4,5-trimethoxyphenyl)-5,5a,8a,9-tetrahydrofuro[3′,4′:6,7]naphtho[2,3-d][1,3]dioxol-6(8H)-one
aSchool of Pharmaceutical Sciences, Tianjin Medical University, Tianjin 300071, People's Republic of China, and bRoom of Pharmacognosy, Medical College of Chinese People's Armed Police Forces, Tianjin 300162, People's Republic of China
*Correspondence e-mail: tjch2010@yahoo.cn
In the title compound, C30H31NO8, the tetrahydrofuran ring and the six-membered ring fused to it both display envelope conformations, both having the same C atom as the flap. The dihedral angles between the benzene ring of the benzo[d][1,3]dioxole ring system and the other two benzene rings are 53.73 (3) and 83.30 (2)°. An intramolecular N—H⋯O hydrogen bond is present. In the crystal, weak intermolecular C—H⋯O hydrogen bonds link the molecules into chains parallel to the c axis.
Related literature
For the crystal structures of related podophyllotoxin derivatives, see: Luo et al. (2011); Li et al. (2011).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku, 2007); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S160053681202572X/rz2767sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S160053681202572X/rz2767Isup2.hkl
4β-Aminopodophyllotoxin (1.0 mmol), 2-methoxybenaldehyde (1.0 mmol) and ethylic acid (0.01 mmol) were dissolved in 95% ethanol. The mixture was stirred at room temperature for 6 h. The residue was purified by on silica gel using petroleum ether/ethyl acetate (1:1 v/v) as Then the obtained compound (1 mmol) and NaBH4 (4 mmol) were dissolved in dry methanol. The mixture was stirred at 0°C for 3 h. The residue was purified by on silica gel using petroleum ether/ethyl acetate (1:1 v/v) as Single crystals suitable for X-ray diffraction were prepared by evaporation of the solution at room temperature.
The amine H atom was located in a difference Fourier map and refined isotropically with the N—H distance constrained to be 0.91 (1) Å. All other H atoms were found on difference maps, and included in the final cycles of
using a riding model, with C—H = 0.93–0.98 Å and with Uiso(H) = 1.2Ueq(C) for aryl and methylene H atoms and 1.5Ueq(C) for the methyl H atoms. In the absence of significant anomalous scatterers in the molecule, 877 Friedel pairs were merged before the final refinement.Podophyllotoxin is well known for its antitumor activity. Based on the structure-activity relationships of podophyllotoxins and in order to find compounds with superior bioactivity and overcoming multidrug resistance, in continuation of our structural study of new derivatives of podophyllotoxin (Luo et al., 2011; Li et al., 2011), we report here the
of title compound.In title compound (Fig. 1), bond lengths and angles are normal and in good agreement with those reported previously for related compounds (Luo et al., 2011; Li et al., 2011). The tetrahydrofuran ring (C18—C21/O4) and the six-membered ring (C9—C10/C16—C18/C21) fused to it both display envelope conformations, with atom C21 displaced by 0.590 (4) and 0.614 (4) Å from the mean planes through O4/C18–C20 and C9/C10/C16–C18, respectively. The dihedral angles between the benzene ring (C10—C16) of the benzo[d]-[1,3]dioxole ring system and the other two benzene rings (C2—C7 and C22—C27) are 53.73 (3) and 83.30 (2) °, respectively. The
is enforced by an intramolecular N—H···O hydrogen bond (Table 1). There are weaker C—H···O intermolecular interactions, linking molecules into chains parallel to [0 0 1].For the crystal structures of related podophyllotoxin derivatives, see: Luo et al. (2011); Li et al. (2011).
Data collection: CrystalClear (Rigaku, 2007); cell
CrystalClear (Rigaku, 2007); data reduction: CrystalClear (Rigaku, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. View of the title compound, with displacement ellipsoids drawn at the 30% probability level. |
C30H31NO8 | F(000) = 1128 |
Mr = 533.56 | Dx = 1.349 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 6120 reflections |
a = 9.6203 (19) Å | θ = 2.5–28.0° |
b = 12.870 (3) Å | µ = 0.10 mm−1 |
c = 21.227 (4) Å | T = 293 K |
V = 2628.1 (9) Å3 | Prism, colorless |
Z = 4 | 0.30 × 0.20 × 0.10 mm |
Rigaku Saturn diffractometer | 2641 independent reflections |
Radiation source: rotating anode | 1618 reflections with I > 2σ(I) |
Confocal monochromator | Rint = 0.088 |
ω scans | θmax = 25.0°, θmin = 2.5° |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2007) | h = −11→11 |
Tmin = 0.971, Tmax = 0.990 | k = −15→15 |
22214 measured reflections | l = −25→25 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.050 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.114 | w = 1/[σ2(Fo2) + (0.0574P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.89 | (Δ/σ)max < 0.001 |
2641 reflections | Δρmax = 0.23 e Å−3 |
361 parameters | Δρmin = −0.26 e Å−3 |
1 restraint | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0157 (16) |
C30H31NO8 | V = 2628.1 (9) Å3 |
Mr = 533.56 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 9.6203 (19) Å | µ = 0.10 mm−1 |
b = 12.870 (3) Å | T = 293 K |
c = 21.227 (4) Å | 0.30 × 0.20 × 0.10 mm |
Rigaku Saturn diffractometer | 2641 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2007) | 1618 reflections with I > 2σ(I) |
Tmin = 0.971, Tmax = 0.990 | Rint = 0.088 |
22214 measured reflections |
R[F2 > 2σ(F2)] = 0.050 | 1 restraint |
wR(F2) = 0.114 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.89 | Δρmax = 0.23 e Å−3 |
2641 reflections | Δρmin = −0.26 e Å−3 |
361 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 1.3087 (4) | 0.1036 (3) | 0.80717 (14) | 0.0614 (9) | |
O2 | 0.8443 (3) | 0.0045 (3) | 0.74461 (14) | 0.0665 (10) | |
O3 | 0.6445 (3) | 0.0879 (3) | 0.77780 (14) | 0.0571 (9) | |
O4 | 1.0753 (4) | 0.0957 (3) | 1.12178 (13) | 0.0585 (9) | |
O5 | 0.8792 (4) | 0.1874 (3) | 1.13695 (14) | 0.0635 (10) | |
O6 | 0.5983 (3) | −0.2184 (2) | 1.02072 (14) | 0.0537 (8) | |
O7 | 0.4290 (3) | −0.1483 (2) | 1.11232 (14) | 0.0531 (8) | |
O8 | 0.4348 (3) | 0.0507 (2) | 1.14883 (12) | 0.0443 (8) | |
N1 | 1.1935 (4) | 0.1096 (3) | 0.93580 (16) | 0.0435 (9) | |
C1 | 1.3003 (7) | 0.1341 (5) | 0.7425 (2) | 0.0874 (19) | |
H1A | 1.3867 | 0.1190 | 0.7219 | 0.131* | |
H1B | 1.2819 | 0.2073 | 0.7400 | 0.131* | |
H1C | 1.2266 | 0.0965 | 0.7223 | 0.131* | |
C2 | 1.3413 (4) | 0.0025 (4) | 0.8201 (2) | 0.0456 (11) | |
C3 | 1.3595 (5) | −0.0736 (4) | 0.7748 (2) | 0.0631 (14) | |
H3 | 1.3507 | −0.0577 | 0.7323 | 0.076* | |
C4 | 1.3908 (6) | −0.1730 (5) | 0.7937 (3) | 0.0794 (18) | |
H4 | 1.4017 | −0.2248 | 0.7635 | 0.095* | |
C5 | 1.4062 (6) | −0.1971 (4) | 0.8552 (3) | 0.0763 (17) | |
H5 | 1.4290 | −0.2644 | 0.8674 | 0.092* | |
C6 | 1.3874 (5) | −0.1201 (4) | 0.8997 (2) | 0.0609 (14) | |
H6 | 1.3970 | −0.1369 | 0.9421 | 0.073* | |
C7 | 1.3549 (4) | −0.0195 (3) | 0.8835 (2) | 0.0433 (11) | |
C8 | 1.3346 (4) | 0.0647 (4) | 0.93241 (19) | 0.0481 (12) | |
H8A | 1.3578 | 0.0362 | 0.9734 | 0.058* | |
H8B | 1.3999 | 0.1203 | 0.9237 | 0.058* | |
C9 | 1.0832 (4) | 0.0336 (3) | 0.94942 (18) | 0.0382 (10) | |
H9 | 1.1187 | −0.0363 | 0.9407 | 0.046* | |
C10 | 0.9577 (4) | 0.0532 (3) | 0.90818 (17) | 0.0332 (9) | |
C11 | 0.9684 (4) | 0.0190 (3) | 0.84537 (18) | 0.0425 (11) | |
H11 | 1.0492 | −0.0123 | 0.8306 | 0.051* | |
C12 | 0.8573 (4) | 0.0331 (4) | 0.80700 (19) | 0.0457 (11) | |
C13 | 0.7038 (5) | 0.0262 (5) | 0.7288 (2) | 0.0695 (16) | |
H13A | 0.6522 | −0.0381 | 0.7243 | 0.083* | |
H13B | 0.6996 | 0.0634 | 0.6891 | 0.083* | |
C14 | 0.7386 (4) | 0.0824 (3) | 0.82683 (19) | 0.0397 (10) | |
C15 | 0.7246 (4) | 0.1178 (3) | 0.88648 (18) | 0.0389 (10) | |
H15 | 0.6439 | 0.1515 | 0.8993 | 0.047* | |
C16 | 0.8360 (4) | 0.1020 (3) | 0.92869 (17) | 0.0333 (9) | |
C17 | 0.8108 (4) | 0.1312 (3) | 0.99722 (17) | 0.0373 (10) | |
H17 | 0.7701 | 0.2010 | 0.9984 | 0.045* | |
C18 | 0.9513 (4) | 0.1347 (3) | 1.03028 (17) | 0.0382 (10) | |
H18 | 1.0016 | 0.1944 | 1.0129 | 0.046* | |
C19 | 0.9569 (5) | 0.1447 (3) | 1.1010 (2) | 0.0493 (12) | |
C20 | 1.1526 (5) | 0.0526 (4) | 1.06892 (19) | 0.0508 (12) | |
H20A | 1.1940 | −0.0137 | 1.0798 | 0.061* | |
H20B | 1.2250 | 0.0998 | 1.0551 | 0.061* | |
C21 | 1.0407 (4) | 0.0397 (3) | 1.01841 (17) | 0.0380 (10) | |
H21 | 0.9859 | −0.0222 | 1.0285 | 0.046* | |
C22 | 0.7088 (4) | 0.0558 (3) | 1.02781 (18) | 0.0376 (10) | |
C23 | 0.7037 (4) | −0.0481 (3) | 1.00894 (19) | 0.0425 (10) | |
H23 | 0.7621 | −0.0718 | 0.9771 | 0.051* | |
C24 | 0.6120 (5) | −0.1156 (3) | 1.03751 (19) | 0.0415 (11) | |
C25 | 0.5238 (4) | −0.0815 (3) | 1.08588 (18) | 0.0395 (10) | |
C26 | 0.5260 (4) | 0.0226 (3) | 1.10325 (18) | 0.0380 (10) | |
C27 | 0.6187 (4) | 0.0907 (3) | 1.07381 (18) | 0.0408 (10) | |
H27 | 0.6197 | 0.1604 | 1.0854 | 0.049* | |
C28 | 0.6889 (5) | −0.2543 (3) | 0.9721 (2) | 0.0652 (15) | |
H28A | 0.6730 | −0.2146 | 0.9344 | 0.098* | |
H28B | 0.6709 | −0.3264 | 0.9638 | 0.098* | |
H28C | 0.7837 | −0.2459 | 0.9852 | 0.098* | |
C29 | 0.4876 (6) | −0.2235 (4) | 1.1542 (3) | 0.0791 (18) | |
H29A | 0.5529 | −0.2659 | 1.1316 | 0.119* | |
H29B | 0.4149 | −0.2665 | 1.1709 | 0.119* | |
H29C | 0.5343 | −0.1886 | 1.1881 | 0.119* | |
C30 | 0.4447 (5) | 0.1544 (4) | 1.1727 (2) | 0.0624 (14) | |
H30A | 0.5374 | 0.1668 | 1.1877 | 0.094* | |
H30B | 0.3800 | 0.1632 | 1.2068 | 0.094* | |
H30C | 0.4233 | 0.2029 | 1.1397 | 0.094* | |
H1 | 1.181 (4) | 0.134 (3) | 0.8961 (8) | 0.034 (11)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.074 (2) | 0.065 (2) | 0.0459 (18) | −0.0055 (19) | −0.0023 (17) | 0.0037 (17) |
O2 | 0.051 (2) | 0.107 (3) | 0.0417 (19) | 0.0120 (19) | −0.0044 (15) | −0.0175 (18) |
O3 | 0.0455 (19) | 0.078 (2) | 0.0483 (17) | 0.0075 (16) | −0.0163 (16) | −0.0041 (17) |
O4 | 0.068 (2) | 0.069 (2) | 0.0390 (17) | 0.0026 (18) | −0.0069 (16) | −0.0055 (16) |
O5 | 0.082 (3) | 0.063 (2) | 0.0452 (19) | 0.003 (2) | 0.0101 (18) | −0.0183 (17) |
O6 | 0.063 (2) | 0.0339 (17) | 0.065 (2) | −0.0061 (15) | 0.0148 (18) | −0.0082 (15) |
O7 | 0.047 (2) | 0.0513 (19) | 0.0613 (19) | −0.0114 (16) | 0.0073 (16) | 0.0073 (16) |
O8 | 0.0394 (18) | 0.0526 (19) | 0.0410 (16) | 0.0017 (15) | 0.0101 (14) | −0.0049 (14) |
N1 | 0.042 (2) | 0.044 (2) | 0.045 (2) | −0.0039 (18) | 0.0038 (18) | −0.0020 (19) |
C1 | 0.094 (5) | 0.108 (5) | 0.060 (3) | −0.016 (4) | −0.017 (3) | 0.025 (3) |
C2 | 0.034 (3) | 0.055 (3) | 0.048 (3) | −0.008 (2) | 0.004 (2) | −0.006 (2) |
C3 | 0.057 (3) | 0.077 (4) | 0.055 (3) | −0.005 (3) | 0.000 (3) | −0.020 (3) |
C4 | 0.066 (4) | 0.074 (4) | 0.098 (5) | 0.005 (3) | −0.006 (4) | −0.041 (4) |
C5 | 0.082 (4) | 0.056 (3) | 0.090 (4) | 0.021 (3) | −0.005 (4) | −0.015 (3) |
C6 | 0.049 (3) | 0.068 (4) | 0.065 (3) | 0.007 (3) | −0.007 (3) | 0.000 (3) |
C7 | 0.034 (2) | 0.055 (3) | 0.042 (2) | −0.003 (2) | −0.003 (2) | −0.005 (2) |
C8 | 0.036 (3) | 0.063 (3) | 0.045 (2) | −0.007 (2) | −0.004 (2) | −0.011 (2) |
C9 | 0.034 (2) | 0.036 (2) | 0.045 (2) | −0.0021 (19) | −0.0015 (19) | −0.007 (2) |
C10 | 0.031 (2) | 0.034 (2) | 0.035 (2) | −0.0017 (19) | 0.0006 (18) | 0.0000 (18) |
C11 | 0.032 (2) | 0.059 (3) | 0.036 (2) | 0.005 (2) | −0.002 (2) | −0.009 (2) |
C12 | 0.042 (3) | 0.060 (3) | 0.035 (2) | 0.000 (2) | 0.001 (2) | −0.006 (2) |
C13 | 0.051 (3) | 0.110 (5) | 0.047 (3) | 0.007 (3) | −0.013 (3) | −0.014 (3) |
C14 | 0.034 (2) | 0.043 (3) | 0.042 (2) | −0.001 (2) | −0.008 (2) | 0.003 (2) |
C15 | 0.035 (2) | 0.041 (2) | 0.041 (2) | 0.0063 (19) | 0.000 (2) | 0.002 (2) |
C16 | 0.039 (2) | 0.029 (2) | 0.032 (2) | −0.0042 (19) | 0.0016 (19) | 0.0005 (18) |
C17 | 0.043 (3) | 0.031 (2) | 0.038 (2) | 0.0038 (19) | 0.0060 (19) | 0.0030 (18) |
C18 | 0.047 (3) | 0.032 (2) | 0.036 (2) | −0.005 (2) | 0.003 (2) | 0.0012 (19) |
C19 | 0.063 (3) | 0.040 (3) | 0.045 (3) | −0.013 (2) | 0.000 (3) | −0.005 (2) |
C20 | 0.057 (3) | 0.055 (3) | 0.040 (2) | 0.002 (2) | −0.002 (2) | −0.003 (2) |
C21 | 0.044 (2) | 0.036 (2) | 0.034 (2) | −0.0007 (19) | −0.003 (2) | 0.002 (2) |
C22 | 0.041 (2) | 0.033 (2) | 0.038 (2) | −0.0031 (19) | 0.003 (2) | −0.003 (2) |
C23 | 0.047 (3) | 0.036 (2) | 0.045 (2) | 0.002 (2) | 0.012 (2) | −0.002 (2) |
C24 | 0.042 (3) | 0.032 (2) | 0.051 (3) | −0.005 (2) | −0.005 (2) | −0.001 (2) |
C25 | 0.035 (2) | 0.043 (3) | 0.040 (2) | −0.006 (2) | 0.000 (2) | 0.002 (2) |
C26 | 0.035 (2) | 0.043 (2) | 0.036 (2) | 0.000 (2) | 0.003 (2) | −0.002 (2) |
C27 | 0.044 (3) | 0.035 (2) | 0.043 (2) | 0.004 (2) | 0.001 (2) | −0.002 (2) |
C28 | 0.086 (4) | 0.037 (3) | 0.073 (4) | −0.004 (3) | 0.020 (3) | −0.017 (2) |
C29 | 0.085 (4) | 0.065 (4) | 0.088 (4) | 0.004 (3) | 0.018 (4) | 0.029 (3) |
C30 | 0.068 (4) | 0.052 (3) | 0.067 (3) | 0.001 (3) | 0.020 (3) | −0.009 (3) |
O1—C2 | 1.367 (5) | C10—C11 | 1.408 (5) |
O1—C1 | 1.429 (5) | C11—C12 | 1.356 (5) |
O2—C12 | 1.381 (5) | C11—H11 | 0.9300 |
O2—C13 | 1.421 (5) | C12—C14 | 1.373 (6) |
O3—C14 | 1.381 (5) | C13—H13A | 0.9700 |
O3—C13 | 1.427 (5) | C13—H13B | 0.9700 |
O4—C19 | 1.375 (6) | C14—C15 | 1.352 (5) |
O4—C20 | 1.456 (5) | C15—C16 | 1.412 (5) |
O5—C19 | 1.200 (5) | C15—H15 | 0.9300 |
O6—C24 | 1.378 (4) | C16—C17 | 1.522 (5) |
O6—C28 | 1.428 (5) | C17—C18 | 1.524 (5) |
O7—C25 | 1.372 (5) | C17—C22 | 1.525 (5) |
O7—C29 | 1.429 (5) | C17—H17 | 0.9800 |
O8—C26 | 1.355 (4) | C18—C19 | 1.509 (5) |
O8—C30 | 1.431 (5) | C18—C21 | 1.516 (5) |
N1—C9 | 1.471 (5) | C18—H18 | 0.9800 |
N1—C8 | 1.477 (5) | C20—C21 | 1.528 (5) |
N1—H1 | 0.907 (10) | C20—H20A | 0.9700 |
C1—H1A | 0.9600 | C20—H20B | 0.9700 |
C1—H1B | 0.9600 | C21—H21 | 0.9800 |
C1—H1C | 0.9600 | C22—C27 | 1.381 (6) |
C2—C7 | 1.382 (6) | C22—C23 | 1.397 (5) |
C2—C3 | 1.383 (6) | C23—C24 | 1.378 (6) |
C3—C4 | 1.375 (7) | C23—H23 | 0.9300 |
C3—H3 | 0.9300 | C24—C25 | 1.402 (5) |
C4—C5 | 1.351 (7) | C25—C26 | 1.390 (5) |
C4—H4 | 0.9300 | C26—C27 | 1.398 (6) |
C5—C6 | 1.380 (7) | C27—H27 | 0.9300 |
C5—H5 | 0.9300 | C28—H28A | 0.9600 |
C6—C7 | 1.375 (6) | C28—H28B | 0.9600 |
C6—H6 | 0.9300 | C28—H28C | 0.9600 |
C7—C8 | 1.512 (6) | C29—H29A | 0.9600 |
C8—H8A | 0.9700 | C29—H29B | 0.9600 |
C8—H8B | 0.9700 | C29—H29C | 0.9600 |
C9—C10 | 1.513 (5) | C30—H30A | 0.9600 |
C9—C21 | 1.522 (5) | C30—H30B | 0.9600 |
C9—H9 | 0.9800 | C30—H30C | 0.9600 |
C10—C16 | 1.398 (5) | ||
C2—O1—C1 | 117.9 (4) | C10—C16—C15 | 120.2 (3) |
C12—O2—C13 | 105.1 (3) | C10—C16—C17 | 122.8 (3) |
C14—O3—C13 | 105.0 (3) | C15—C16—C17 | 116.7 (3) |
C19—O4—C20 | 110.6 (3) | C16—C17—C18 | 107.8 (3) |
C24—O6—C28 | 116.1 (3) | C16—C17—C22 | 110.6 (3) |
C25—O7—C29 | 114.6 (3) | C18—C17—C22 | 113.2 (3) |
C26—O8—C30 | 117.3 (3) | C16—C17—H17 | 108.4 |
C9—N1—C8 | 114.4 (3) | C18—C17—H17 | 108.4 |
C9—N1—H1 | 109 (2) | C22—C17—H17 | 108.4 |
C8—N1—H1 | 102 (2) | C19—C18—C21 | 102.4 (3) |
O1—C1—H1A | 109.5 | C19—C18—C17 | 119.5 (4) |
O1—C1—H1B | 109.5 | C21—C18—C17 | 113.8 (3) |
H1A—C1—H1B | 109.5 | C19—C18—H18 | 106.8 |
O1—C1—H1C | 109.5 | C21—C18—H18 | 106.8 |
H1A—C1—H1C | 109.5 | C17—C18—H18 | 106.8 |
H1B—C1—H1C | 109.5 | O5—C19—O4 | 121.5 (4) |
O1—C2—C7 | 114.3 (4) | O5—C19—C18 | 130.5 (5) |
O1—C2—C3 | 124.3 (4) | O4—C19—C18 | 108.0 (4) |
C7—C2—C3 | 121.4 (5) | O4—C20—C21 | 102.9 (3) |
C4—C3—C2 | 119.0 (5) | O4—C20—H20A | 111.2 |
C4—C3—H3 | 120.5 | C21—C20—H20A | 111.2 |
C2—C3—H3 | 120.5 | O4—C20—H20B | 111.2 |
C5—C4—C3 | 121.2 (5) | C21—C20—H20B | 111.2 |
C5—C4—H4 | 119.4 | H20A—C20—H20B | 109.1 |
C3—C4—H4 | 119.4 | C18—C21—C9 | 110.7 (3) |
C4—C5—C6 | 118.9 (5) | C18—C21—C20 | 101.3 (3) |
C4—C5—H5 | 120.6 | C9—C21—C20 | 119.4 (3) |
C6—C5—H5 | 120.6 | C18—C21—H21 | 108.3 |
C7—C6—C5 | 122.3 (5) | C9—C21—H21 | 108.3 |
C7—C6—H6 | 118.8 | C20—C21—H21 | 108.3 |
C5—C6—H6 | 118.8 | C27—C22—C23 | 119.5 (4) |
C6—C7—C2 | 117.2 (4) | C27—C22—C17 | 119.8 (4) |
C6—C7—C8 | 122.2 (4) | C23—C22—C17 | 120.7 (4) |
C2—C7—C8 | 120.6 (4) | C24—C23—C22 | 120.0 (4) |
N1—C8—C7 | 115.6 (3) | C24—C23—H23 | 120.0 |
N1—C8—H8A | 108.4 | C22—C23—H23 | 120.0 |
C7—C8—H8A | 108.4 | O6—C24—C23 | 123.5 (4) |
N1—C8—H8B | 108.4 | O6—C24—C25 | 115.6 (4) |
C7—C8—H8B | 108.4 | C23—C24—C25 | 120.9 (4) |
H8A—C8—H8B | 107.4 | O7—C25—C26 | 120.3 (4) |
N1—C9—C10 | 110.6 (3) | O7—C25—C24 | 120.4 (4) |
N1—C9—C21 | 110.4 (3) | C26—C25—C24 | 119.1 (4) |
C10—C9—C21 | 109.5 (3) | O8—C26—C25 | 115.9 (4) |
N1—C9—H9 | 108.8 | O8—C26—C27 | 124.4 (4) |
C10—C9—H9 | 108.8 | C25—C26—C27 | 119.7 (4) |
C21—C9—H9 | 108.8 | C22—C27—C26 | 120.8 (4) |
C16—C10—C11 | 119.8 (4) | C22—C27—H27 | 119.6 |
C16—C10—C9 | 124.3 (3) | C26—C27—H27 | 119.6 |
C11—C10—C9 | 116.0 (3) | O6—C28—H28A | 109.5 |
C12—C11—C10 | 118.0 (4) | O6—C28—H28B | 109.5 |
C12—C11—H11 | 121.0 | H28A—C28—H28B | 109.5 |
C10—C11—H11 | 121.0 | O6—C28—H28C | 109.5 |
C11—C12—C14 | 122.3 (4) | H28A—C28—H28C | 109.5 |
C11—C12—O2 | 127.7 (4) | H28B—C28—H28C | 109.5 |
C14—C12—O2 | 110.0 (4) | O7—C29—H29A | 109.5 |
O2—C13—O3 | 108.5 (4) | O7—C29—H29B | 109.5 |
O2—C13—H13A | 110.0 | H29A—C29—H29B | 109.5 |
O3—C13—H13A | 110.0 | O7—C29—H29C | 109.5 |
O2—C13—H13B | 110.0 | H29A—C29—H29C | 109.5 |
O3—C13—H13B | 110.0 | H29B—C29—H29C | 109.5 |
H13A—C13—H13B | 108.4 | O8—C30—H30A | 109.5 |
C15—C14—C12 | 121.7 (4) | O8—C30—H30B | 109.5 |
C15—C14—O3 | 128.5 (4) | H30A—C30—H30B | 109.5 |
C12—C14—O3 | 109.8 (4) | O8—C30—H30C | 109.5 |
C14—C15—C16 | 118.0 (4) | H30A—C30—H30C | 109.5 |
C14—C15—H15 | 121.0 | H30B—C30—H30C | 109.5 |
C16—C15—H15 | 121.0 | ||
C1—O1—C2—C7 | 176.6 (4) | C16—C17—C18—C19 | −170.2 (3) |
C1—O1—C2—C3 | −3.6 (7) | C22—C17—C18—C19 | −47.5 (5) |
O1—C2—C3—C4 | −179.4 (5) | C16—C17—C18—C21 | −49.0 (4) |
C7—C2—C3—C4 | 0.5 (7) | C22—C17—C18—C21 | 73.7 (4) |
C2—C3—C4—C5 | −1.1 (9) | C20—O4—C19—O5 | −178.7 (4) |
C3—C4—C5—C6 | 1.1 (9) | C20—O4—C19—C18 | 0.3 (5) |
C4—C5—C6—C7 | −0.6 (9) | C21—C18—C19—O5 | −157.9 (5) |
C5—C6—C7—C2 | 0.0 (7) | C17—C18—C19—O5 | −31.2 (7) |
C5—C6—C7—C8 | −179.9 (5) | C21—C18—C19—O4 | 23.3 (4) |
O1—C2—C7—C6 | 179.9 (4) | C17—C18—C19—O4 | 150.0 (4) |
C3—C2—C7—C6 | 0.0 (6) | C19—O4—C20—C21 | −23.6 (5) |
O1—C2—C7—C8 | −0.2 (6) | C19—C18—C21—C9 | −163.7 (3) |
C3—C2—C7—C8 | 180.0 (4) | C17—C18—C21—C9 | 66.0 (4) |
C9—N1—C8—C7 | 58.7 (5) | C19—C18—C21—C20 | −36.0 (4) |
C6—C7—C8—N1 | −116.0 (5) | C17—C18—C21—C20 | −166.4 (3) |
C2—C7—C8—N1 | 64.0 (5) | N1—C9—C21—C18 | 75.7 (4) |
C8—N1—C9—C10 | −137.2 (3) | C10—C9—C21—C18 | −46.3 (4) |
C8—N1—C9—C21 | 101.5 (4) | N1—C9—C21—C20 | −41.3 (5) |
N1—C9—C10—C16 | −102.6 (4) | C10—C9—C21—C20 | −163.2 (4) |
C21—C9—C10—C16 | 19.2 (5) | O4—C20—C21—C18 | 36.5 (4) |
N1—C9—C10—C11 | 77.3 (4) | O4—C20—C21—C9 | 158.2 (3) |
C21—C9—C10—C11 | −160.8 (4) | C16—C17—C22—C27 | −147.0 (4) |
C16—C10—C11—C12 | −1.3 (6) | C18—C17—C22—C27 | 91.9 (5) |
C9—C10—C11—C12 | 178.8 (4) | C16—C17—C22—C23 | 31.8 (5) |
C10—C11—C12—C14 | 2.3 (7) | C18—C17—C22—C23 | −89.4 (5) |
C10—C11—C12—O2 | −179.0 (4) | C27—C22—C23—C24 | −1.9 (6) |
C13—O2—C12—C11 | 173.7 (5) | C17—C22—C23—C24 | 179.3 (4) |
C13—O2—C12—C14 | −7.5 (5) | C28—O6—C24—C23 | 1.8 (6) |
C12—O2—C13—O3 | 12.4 (5) | C28—O6—C24—C25 | −179.2 (4) |
C14—O3—C13—O2 | −12.6 (5) | C22—C23—C24—O6 | 178.5 (4) |
C11—C12—C14—C15 | −1.4 (7) | C22—C23—C24—C25 | −0.5 (6) |
O2—C12—C14—C15 | 179.6 (4) | C29—O7—C25—C26 | −110.3 (5) |
C11—C12—C14—O3 | 178.6 (4) | C29—O7—C25—C24 | 74.8 (5) |
O2—C12—C14—O3 | −0.4 (5) | O6—C24—C25—O7 | −1.7 (5) |
C13—O3—C14—C15 | −172.0 (5) | C23—C24—C25—O7 | 177.4 (4) |
C13—O3—C14—C12 | 8.0 (5) | O6—C24—C25—C26 | −176.6 (4) |
C12—C14—C15—C16 | −0.5 (6) | C23—C24—C25—C26 | 2.5 (6) |
O3—C14—C15—C16 | 179.5 (4) | C30—O8—C26—C25 | 173.3 (4) |
C11—C10—C16—C15 | −0.6 (6) | C30—O8—C26—C27 | −6.8 (6) |
C9—C10—C16—C15 | 179.4 (3) | O7—C25—C26—O8 | 2.9 (6) |
C11—C10—C16—C17 | 173.6 (4) | C24—C25—C26—O8 | 177.8 (3) |
C9—C10—C16—C17 | −6.4 (6) | O7—C25—C26—C27 | −177.0 (4) |
C14—C15—C16—C10 | 1.5 (6) | C24—C25—C26—C27 | −2.1 (6) |
C14—C15—C16—C17 | −173.1 (4) | C23—C22—C27—C26 | 2.3 (6) |
C10—C16—C17—C18 | 19.9 (5) | C17—C22—C27—C26 | −178.9 (4) |
C15—C16—C17—C18 | −165.7 (3) | O8—C26—C27—C22 | 179.8 (4) |
C10—C16—C17—C22 | −104.3 (4) | C25—C26—C27—C22 | −0.3 (6) |
C15—C16—C17—C22 | 70.0 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1 | 0.91 (1) | 2.28 (3) | 2.947 (5) | 130 (3) |
C3—H3···O4i | 0.93 | 2.50 | 3.321 (6) | 147 |
Symmetry code: (i) −x+5/2, −y, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C30H31NO8 |
Mr | 533.56 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 293 |
a, b, c (Å) | 9.6203 (19), 12.870 (3), 21.227 (4) |
V (Å3) | 2628.1 (9) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.30 × 0.20 × 0.10 |
Data collection | |
Diffractometer | Rigaku Saturn |
Absorption correction | Multi-scan (CrystalClear; Rigaku, 2007) |
Tmin, Tmax | 0.971, 0.990 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 22214, 2641, 1618 |
Rint | 0.088 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.114, 0.89 |
No. of reflections | 2641 |
No. of parameters | 361 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.23, −0.26 |
Computer programs: CrystalClear (Rigaku, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1 | 0.907 (10) | 2.28 (3) | 2.947 (5) | 130 (3) |
C3—H3···O4i | 0.93 | 2.50 | 3.321 (6) | 147.4 |
Symmetry code: (i) −x+5/2, −y, z−1/2. |
Acknowledgements
This work was supported by the National Natural Science Foundation of China (No. 30873363), the Great Program of the Science Foundation of Tianjin (09ZCKFNC01200) and the Program of the Science Foundation of Tianjin (08JCYBJC070000)
References
Li, Y., Wang, H., Chen, H., Chen, L.-T. & Liu, J. (2011). Acta Cryst. E67, o1538–o1539. Web of Science CSD CrossRef IUCr Journals Google Scholar
Luo, G., Chen, H., Zhou, J., Tian, D.-L. & Zhang, S. (2011). Acta Cryst. E67, o2087. Web of Science CSD CrossRef IUCr Journals Google Scholar
Rigaku. (2007). CrystalClear. Rigaku Corporation, Tokyo, Japan. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
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Podophyllotoxin is well known for its antitumor activity. Based on the structure-activity relationships of podophyllotoxins and in order to find compounds with superior bioactivity and overcoming multidrug resistance, in continuation of our structural study of new derivatives of podophyllotoxin (Luo et al., 2011; Li et al., 2011), we report here the crystal structure of title compound.
In title compound (Fig. 1), bond lengths and angles are normal and in good agreement with those reported previously for related compounds (Luo et al., 2011; Li et al., 2011). The tetrahydrofuran ring (C18—C21/O4) and the six-membered ring (C9—C10/C16—C18/C21) fused to it both display envelope conformations, with atom C21 displaced by 0.590 (4) and 0.614 (4) Å from the mean planes through O4/C18–C20 and C9/C10/C16–C18, respectively. The dihedral angles between the benzene ring (C10—C16) of the benzo[d]-[1,3]dioxole ring system and the other two benzene rings (C2—C7 and C22—C27) are 53.73 (3) and 83.30 (2) °, respectively. The molecular conformation is enforced by an intramolecular N—H···O hydrogen bond (Table 1). There are weaker C—H···O intermolecular interactions, linking molecules into chains parallel to [0 0 1].