organic compounds
(Adamantan-1-yl)(phenylsulfanyl)methanone
aDepartment of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, Riyadh 11451, Saudi Arabia, bDepartment of Organic Chemistry, Faculty of Pharmacy, Al-Azhar University, Cairo 11884, Egypt, cDepartment of Medicinal Chemistry, Faculty of Pharmacy, University of Mansoura, Mansoura 35516, Egypt, dDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia, and eChemistry Department, Faculty of Science, King Abdulaziz University, PO Box 80203 Jeddah, Saudi Arabia
*Correspondence e-mail: Edward.Tiekink@gmail.com
Two independent molecules (A and B) comprises the of the title ester, C17H20OS. The phenyl ring is inclined with respect to the thiocarboxyl group, forming dihedral angles of 58.95 (6) (in molecule A) and 62.28 (6)° (in molecule B). In each independent molecule, one adamantyl methylene C atom is nearly coplanar with the thiocarboxyl group. The major difference between molecules A and B relates to the relationship between the S atom and the coplanar adamantyl methylene C atom [Ca—Cq—Cc—S torsion angles = 178.25 (8) and 6.81 (13)°, respectively; Ca = adamantyl methylene C atom, Cq = quaternary C atom and Cc = carbonyl C atom], whereby the S atom in molecule A has an anti relationship with the methylene C atom and in molecule B, the S atom is syn. In the crystal, C—H⋯π interactions are formed leading to supramolecular layers in the ac plane.
Related literature
For applications of thioesters in organic synthesis, see: Shah et al. (2002); Manabe et al. (2007); Horst et al. (2007). For the synthesis, see: El-Azab & Abdel-Aziz et al. (2012).
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis PRO (Agilent, 2012); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997), DIAMOND (Brandenburg, 2006) and QMol (Gans & Shalloway, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
https://doi.org/10.1107/S1600536812026116/xu5558sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812026116/xu5558Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536812026116/xu5558Isup3.cml
Trifluoroacetic acid (0.4 equiv.) was added drop-wise to a stirred solution of 1-adamantane carboxylic acid (1 equiv.) and thiophenol (1 equiv) in dry CH3CN (0.01 mol/L) over a period of 15 min. at room temperature. After being stirred for 5 h at 333 K, the mixture was quenched by adding ammonium chloride solution (5 ml), extracted with ethylacetate, washed with brine and dried over anhydrous Na2SO4. The product, obtained after evaporation of the solvent, was purified by ═O). 1H NMR (CDCl3): δ 7.42–7.36 (m, 5H), 2.13–2.11 (m, 3H), 2.04–2.02 (m, 6H), 1.82–1.76 (m, 6H). 13C NMR (CDCl3): δ 28.1, 28.3, 36.4, 39.3, 49.1, 128.0, 129.1, 134.8, 135.1, 204.2.
using mixture of hexane and CHCl3 as The crystals were obtained by slow evaporation of the M.pt; 341 K; 86% yield. IR (KBr): 1680 cm-1 (CCarbon-bound H-atoms were placed in calculated positions [C—H = 0.95 to 1.00 Å, Uiso(H) = 1.2Ueq(C)] and were included in the
in the riding model approximation.It is widely known that thioesters are useful building blocks for organic transformations, for example thioesters are important in many areas of organic chemistry, particularly in peptide, protein, and β-lactam synthesis (Shah et al., 2002). Furthermore, they find application in peptide bond formation (Manabe et al., 2007) and in natural product synthesis (Horst et al., 2007). The title compound, S-phenyl adamantane-1-carbothioate (I) was synthesized according to El-Azab & Abdel-Aziz (2012) and herein, we describe its determination.
Two independent molecules comprise the
of (I), Fig. 1. As seen from the overlay diagram, Fig. 2, there are non-trivial differences between the molecules when the S1-containing molecule is superimposed with the inverted S2-containing molecule. The dihedral angle between the plane through the COS atoms and the S-bound phenyl ring is 58.95 (6)° for the S1-containing molecule and 62.28 (6)° for the S2-containing molecule. There is a more dramatic difference in the relative orientations between the COS residue and the adamantyl group. This is best quantified in the values of the C2—C1—C11—S1 and C25—C18—C28—S2 torsion angles of 178.25 (8) and 6.81 (13)°, respectively, i.e. where there is an almost co-planar relationship between the S and one methylene-C atom. The difference arises in the the S1 atom has anti relationship with the co-planar methylene-C atom and the S2 atom has a syn relationship.In the crystal packing, C—H···π interactions are formed with the C12—C17 ring forming two such interactions, Table 1. The result is the formation of a supramolecular layer in the ac plane with the adamantyl groups inter-digitating along the b axis, Fig. 2.
For applications of thioesters in organic synthesis, see: Shah et al. (2002); Manabe et al. (2007); Horst et al. (2007). For the synthesis, see: El-Azab & Abdel-Aziz et al. (2012).
Data collection: CrysAlis PRO (Agilent, 2012); cell
CrysAlis PRO (Agilent, 2012); data reduction: CrysAlis PRO (Agilent, 2012); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997), DIAMOND (Brandenburg, 2006) and QMol (Gans & Shalloway, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).C17H20OS | F(000) = 1168 |
Mr = 272.39 | Dx = 1.286 Mg m−3 |
Monoclinic, P21/c | Cu Kα radiation, λ = 1.54184 Å |
Hall symbol: -P 2ybc | Cell parameters from 7141 reflections |
a = 6.3545 (1) Å | θ = 4.5–76.4° |
b = 39.4559 (5) Å | µ = 1.94 mm−1 |
c = 11.3878 (1) Å | T = 100 K |
β = 99.879 (1)° | Prism, colourless |
V = 2812.84 (6) Å3 | 0.30 × 0.25 × 0.20 mm |
Z = 8 |
Agilent SuperNova Dual diffractometer with an Atlas detector | 5753 independent reflections |
Radiation source: SuperNova (Cu) X-ray Source | 5445 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.015 |
Detector resolution: 10.4041 pixels mm-1 | θmax = 76.6°, θmin = 4.5° |
ω scan | h = −7→7 |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012) | k = −47→48 |
Tmin = 0.881, Tmax = 1.000 | l = −8→14 |
11270 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.033 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.087 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0484P)2 + 1.0716P] where P = (Fo2 + 2Fc2)/3 |
5753 reflections | (Δ/σ)max = 0.001 |
343 parameters | Δρmax = 0.30 e Å−3 |
0 restraints | Δρmin = −0.40 e Å−3 |
C17H20OS | V = 2812.84 (6) Å3 |
Mr = 272.39 | Z = 8 |
Monoclinic, P21/c | Cu Kα radiation |
a = 6.3545 (1) Å | µ = 1.94 mm−1 |
b = 39.4559 (5) Å | T = 100 K |
c = 11.3878 (1) Å | 0.30 × 0.25 × 0.20 mm |
β = 99.879 (1)° |
Agilent SuperNova Dual diffractometer with an Atlas detector | 5753 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012) | 5445 reflections with I > 2σ(I) |
Tmin = 0.881, Tmax = 1.000 | Rint = 0.015 |
11270 measured reflections |
R[F2 > 2σ(F2)] = 0.033 | 0 restraints |
wR(F2) = 0.087 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.30 e Å−3 |
5753 reflections | Δρmin = −0.40 e Å−3 |
343 parameters |
x | y | z | Uiso*/Ueq | ||
S1 | 0.46660 (5) | 0.389463 (8) | 0.15443 (3) | 0.02399 (9) | |
S2 | 0.08761 (5) | 0.329812 (7) | 0.36140 (3) | 0.02206 (9) | |
O1 | 0.76535 (15) | 0.39786 (2) | 0.02056 (8) | 0.0241 (2) | |
O2 | 0.44170 (15) | 0.29759 (2) | 0.45497 (8) | 0.0251 (2) | |
C1 | 0.76163 (18) | 0.44208 (3) | 0.16696 (10) | 0.0137 (2) | |
C2 | 0.95311 (18) | 0.45667 (3) | 0.11779 (10) | 0.0166 (2) | |
H2A | 1.0706 | 0.4399 | 0.1275 | 0.020* | |
H2B | 0.9109 | 0.4616 | 0.0317 | 0.020* | |
C3 | 1.02995 (18) | 0.48936 (3) | 0.18489 (10) | 0.0171 (2) | |
H3 | 1.1546 | 0.4987 | 0.1525 | 0.021* | |
C4 | 1.09809 (19) | 0.48149 (3) | 0.31807 (11) | 0.0190 (2) | |
H4A | 1.2160 | 0.4648 | 0.3291 | 0.023* | |
H4B | 1.1499 | 0.5024 | 0.3616 | 0.023* | |
C5 | 0.90662 (19) | 0.46717 (3) | 0.36777 (10) | 0.0174 (2) | |
H5 | 0.9507 | 0.4621 | 0.4546 | 0.021* | |
C6 | 0.72444 (19) | 0.49318 (3) | 0.35115 (10) | 0.0179 (2) | |
H6A | 0.6010 | 0.4840 | 0.3834 | 0.021* | |
H6B | 0.7723 | 0.5142 | 0.3953 | 0.021* | |
C7 | 0.65749 (18) | 0.50116 (3) | 0.21815 (11) | 0.0168 (2) | |
H7 | 0.5391 | 0.5182 | 0.2075 | 0.020* | |
C8 | 0.58022 (18) | 0.46848 (3) | 0.15095 (10) | 0.0152 (2) | |
H8A | 0.5350 | 0.4735 | 0.0652 | 0.018* | |
H8B | 0.4557 | 0.4593 | 0.1820 | 0.018* | |
C9 | 0.82946 (19) | 0.43447 (3) | 0.30135 (10) | 0.0162 (2) | |
H9A | 0.7068 | 0.4250 | 0.3337 | 0.019* | |
H9B | 0.9456 | 0.4174 | 0.3129 | 0.019* | |
C10 | 0.84922 (19) | 0.51560 (3) | 0.16903 (11) | 0.0182 (2) | |
H10A | 0.8063 | 0.5211 | 0.0835 | 0.022* | |
H10B | 0.8992 | 0.5367 | 0.2121 | 0.022* | |
C11 | 0.68647 (18) | 0.40943 (3) | 0.10050 (10) | 0.0157 (2) | |
C12 | 0.4232 (2) | 0.35256 (3) | 0.06489 (10) | 0.0186 (2) | |
C13 | 0.2217 (2) | 0.34757 (3) | −0.00245 (11) | 0.0219 (3) | |
H13 | 0.1133 | 0.3642 | −0.0035 | 0.026* | |
C14 | 0.1807 (2) | 0.31787 (4) | −0.06838 (12) | 0.0280 (3) | |
H14 | 0.0429 | 0.3141 | −0.1140 | 0.034* | |
C15 | 0.3390 (3) | 0.29386 (3) | −0.06799 (12) | 0.0310 (3) | |
H15 | 0.3103 | 0.2737 | −0.1138 | 0.037* | |
C16 | 0.5399 (3) | 0.29911 (3) | −0.00078 (12) | 0.0298 (3) | |
H16 | 0.6485 | 0.2826 | −0.0010 | 0.036* | |
C17 | 0.5832 (2) | 0.32837 (3) | 0.06684 (11) | 0.0232 (3) | |
H17 | 0.7201 | 0.3318 | 0.1138 | 0.028* | |
C18 | 0.41351 (18) | 0.35295 (3) | 0.54008 (10) | 0.0144 (2) | |
C19 | 0.61791 (19) | 0.36792 (3) | 0.50444 (10) | 0.0169 (2) | |
H19A | 0.7273 | 0.3500 | 0.5068 | 0.020* | |
H19B | 0.5855 | 0.3769 | 0.4221 | 0.020* | |
C20 | 0.70394 (19) | 0.39656 (3) | 0.59103 (11) | 0.0183 (2) | |
H20 | 0.8358 | 0.4063 | 0.5674 | 0.022* | |
C21 | 0.7582 (2) | 0.38215 (3) | 0.71780 (11) | 0.0211 (3) | |
H21A | 0.8683 | 0.3643 | 0.7206 | 0.025* | |
H21B | 0.8163 | 0.4003 | 0.7740 | 0.025* | |
C22 | 0.5563 (2) | 0.36727 (3) | 0.75447 (10) | 0.0197 (2) | |
H22 | 0.5920 | 0.3579 | 0.8370 | 0.024* | |
C23 | 0.3884 (2) | 0.39527 (3) | 0.75166 (11) | 0.0198 (2) | |
H23A | 0.2581 | 0.3859 | 0.7763 | 0.024* | |
H23B | 0.4446 | 0.4135 | 0.8080 | 0.024* | |
C24 | 0.33386 (19) | 0.40958 (3) | 0.62496 (11) | 0.0174 (2) | |
H24 | 0.2234 | 0.4277 | 0.6227 | 0.021* | |
C25 | 0.24680 (19) | 0.38120 (3) | 0.53755 (11) | 0.0183 (2) | |
H25A | 0.1146 | 0.3718 | 0.5597 | 0.022* | |
H25B | 0.2110 | 0.3906 | 0.4559 | 0.022* | |
C26 | 0.4675 (2) | 0.33886 (3) | 0.66795 (10) | 0.0180 (2) | |
H26A | 0.3372 | 0.3292 | 0.6918 | 0.022* | |
H26B | 0.5745 | 0.3205 | 0.6710 | 0.022* | |
C27 | 0.5349 (2) | 0.42451 (3) | 0.58783 (11) | 0.0189 (2) | |
H27A | 0.5915 | 0.4430 | 0.6429 | 0.023* | |
H27B | 0.4996 | 0.4340 | 0.5064 | 0.023* | |
C28 | 0.33992 (19) | 0.32324 (3) | 0.45677 (10) | 0.0164 (2) | |
C29 | 0.0397 (2) | 0.29028 (3) | 0.28765 (11) | 0.0189 (2) | |
C30 | −0.1416 (2) | 0.27231 (3) | 0.30447 (11) | 0.0228 (3) | |
H30 | −0.2272 | 0.2802 | 0.3595 | 0.027* | |
C31 | −0.1958 (2) | 0.24277 (3) | 0.23994 (12) | 0.0257 (3) | |
H31 | −0.3202 | 0.2306 | 0.2502 | 0.031* | |
C32 | −0.0694 (2) | 0.23103 (3) | 0.16072 (11) | 0.0247 (3) | |
H32 | −0.1073 | 0.2108 | 0.1169 | 0.030* | |
C33 | 0.1126 (2) | 0.24884 (3) | 0.14535 (11) | 0.0232 (3) | |
H33 | 0.2001 | 0.2406 | 0.0919 | 0.028* | |
C34 | 0.1671 (2) | 0.27874 (3) | 0.20787 (11) | 0.0213 (3) | |
H34 | 0.2899 | 0.2912 | 0.1963 | 0.026* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.02653 (17) | 0.02207 (16) | 0.02655 (16) | −0.00994 (12) | 0.01353 (13) | −0.01064 (12) |
S2 | 0.02095 (16) | 0.01698 (15) | 0.02578 (16) | 0.00343 (11) | −0.00291 (12) | −0.00611 (11) |
O1 | 0.0261 (5) | 0.0264 (5) | 0.0218 (4) | −0.0040 (4) | 0.0103 (4) | −0.0081 (4) |
O2 | 0.0249 (5) | 0.0175 (4) | 0.0313 (5) | 0.0064 (4) | 0.0003 (4) | −0.0048 (4) |
C1 | 0.0128 (5) | 0.0158 (5) | 0.0128 (5) | −0.0002 (4) | 0.0028 (4) | 0.0004 (4) |
C2 | 0.0142 (5) | 0.0201 (6) | 0.0166 (5) | −0.0003 (4) | 0.0056 (4) | −0.0003 (4) |
C3 | 0.0122 (5) | 0.0201 (6) | 0.0197 (6) | −0.0026 (4) | 0.0049 (4) | 0.0011 (4) |
C4 | 0.0140 (5) | 0.0217 (6) | 0.0200 (6) | −0.0027 (4) | −0.0006 (4) | −0.0001 (5) |
C5 | 0.0187 (6) | 0.0194 (6) | 0.0134 (5) | −0.0034 (5) | 0.0012 (4) | 0.0003 (4) |
C6 | 0.0182 (6) | 0.0177 (6) | 0.0188 (6) | −0.0042 (4) | 0.0063 (4) | −0.0043 (4) |
C7 | 0.0135 (5) | 0.0152 (5) | 0.0222 (6) | 0.0003 (4) | 0.0039 (4) | 0.0001 (4) |
C8 | 0.0118 (5) | 0.0166 (5) | 0.0170 (5) | 0.0000 (4) | 0.0019 (4) | 0.0010 (4) |
C9 | 0.0181 (6) | 0.0158 (5) | 0.0143 (5) | −0.0007 (4) | 0.0011 (4) | 0.0017 (4) |
C10 | 0.0177 (6) | 0.0166 (5) | 0.0208 (6) | −0.0016 (4) | 0.0043 (4) | 0.0031 (4) |
C11 | 0.0150 (5) | 0.0176 (5) | 0.0141 (5) | 0.0010 (4) | 0.0015 (4) | 0.0011 (4) |
C12 | 0.0259 (6) | 0.0151 (5) | 0.0156 (5) | −0.0034 (5) | 0.0056 (5) | −0.0006 (4) |
C13 | 0.0259 (7) | 0.0192 (6) | 0.0207 (6) | −0.0040 (5) | 0.0047 (5) | 0.0023 (5) |
C14 | 0.0381 (8) | 0.0264 (7) | 0.0185 (6) | −0.0132 (6) | 0.0022 (5) | −0.0001 (5) |
C15 | 0.0594 (10) | 0.0170 (6) | 0.0189 (6) | −0.0095 (6) | 0.0129 (6) | −0.0028 (5) |
C16 | 0.0490 (9) | 0.0176 (6) | 0.0266 (7) | 0.0070 (6) | 0.0172 (6) | 0.0043 (5) |
C17 | 0.0282 (7) | 0.0225 (6) | 0.0193 (6) | 0.0025 (5) | 0.0051 (5) | 0.0048 (5) |
C18 | 0.0143 (5) | 0.0132 (5) | 0.0163 (5) | 0.0014 (4) | 0.0045 (4) | 0.0008 (4) |
C19 | 0.0172 (6) | 0.0164 (5) | 0.0188 (5) | 0.0003 (4) | 0.0082 (4) | 0.0011 (4) |
C20 | 0.0148 (6) | 0.0181 (6) | 0.0235 (6) | −0.0023 (4) | 0.0077 (4) | −0.0009 (5) |
C21 | 0.0165 (6) | 0.0226 (6) | 0.0230 (6) | 0.0021 (5) | −0.0005 (5) | −0.0026 (5) |
C22 | 0.0258 (6) | 0.0191 (6) | 0.0142 (5) | 0.0009 (5) | 0.0036 (5) | 0.0022 (4) |
C23 | 0.0211 (6) | 0.0202 (6) | 0.0202 (6) | −0.0018 (5) | 0.0094 (5) | −0.0034 (5) |
C24 | 0.0154 (6) | 0.0144 (5) | 0.0227 (6) | 0.0022 (4) | 0.0040 (4) | −0.0023 (4) |
C25 | 0.0152 (6) | 0.0162 (5) | 0.0226 (6) | 0.0033 (4) | 0.0012 (4) | −0.0025 (4) |
C26 | 0.0228 (6) | 0.0152 (5) | 0.0171 (5) | 0.0007 (4) | 0.0061 (5) | 0.0032 (4) |
C27 | 0.0219 (6) | 0.0135 (5) | 0.0222 (6) | −0.0010 (4) | 0.0064 (5) | 0.0001 (4) |
C28 | 0.0166 (6) | 0.0163 (5) | 0.0173 (5) | 0.0006 (4) | 0.0056 (4) | 0.0015 (4) |
C29 | 0.0226 (6) | 0.0155 (5) | 0.0173 (5) | 0.0011 (5) | −0.0002 (4) | −0.0013 (4) |
C30 | 0.0231 (6) | 0.0239 (6) | 0.0216 (6) | 0.0000 (5) | 0.0042 (5) | −0.0021 (5) |
C31 | 0.0266 (7) | 0.0236 (6) | 0.0271 (7) | −0.0061 (5) | 0.0051 (5) | −0.0014 (5) |
C32 | 0.0355 (7) | 0.0171 (6) | 0.0204 (6) | −0.0037 (5) | 0.0019 (5) | −0.0023 (5) |
C33 | 0.0338 (7) | 0.0190 (6) | 0.0180 (6) | 0.0010 (5) | 0.0078 (5) | 0.0000 (5) |
C34 | 0.0261 (6) | 0.0181 (6) | 0.0203 (6) | −0.0011 (5) | 0.0060 (5) | 0.0024 (5) |
S1—C12 | 1.7717 (12) | C16—C17 | 1.3888 (19) |
S1—C11 | 1.8011 (12) | C16—H16 | 0.9500 |
S2—C29 | 1.7729 (12) | C17—H17 | 0.9500 |
S2—C28 | 1.7944 (12) | C18—C28 | 1.5298 (16) |
O1—C11 | 1.2021 (15) | C18—C25 | 1.5348 (15) |
O2—C28 | 1.2033 (15) | C18—C19 | 1.5432 (15) |
C1—C11 | 1.5284 (15) | C18—C26 | 1.5413 (15) |
C1—C2 | 1.5360 (15) | C19—C20 | 1.5373 (16) |
C1—C8 | 1.5413 (15) | C19—H19A | 0.9900 |
C1—C9 | 1.5465 (15) | C19—H19B | 0.9900 |
C2—C3 | 1.5357 (16) | C20—C21 | 1.5347 (17) |
C2—H2A | 0.9900 | C20—C27 | 1.5356 (16) |
C2—H2B | 0.9900 | C20—H20 | 1.0000 |
C3—C10 | 1.5337 (16) | C21—C22 | 1.5331 (17) |
C3—C4 | 1.5359 (16) | C21—H21A | 0.9900 |
C3—H3 | 1.0000 | C21—H21B | 0.9900 |
C4—C5 | 1.5349 (16) | C22—C26 | 1.5343 (17) |
C4—H4A | 0.9900 | C22—C23 | 1.5322 (17) |
C4—H4B | 0.9900 | C22—H22 | 1.0000 |
C5—C9 | 1.5330 (16) | C23—C24 | 1.5328 (17) |
C5—C6 | 1.5343 (17) | C23—H23A | 0.9900 |
C5—H5 | 1.0000 | C23—H23B | 0.9900 |
C6—C7 | 1.5339 (16) | C24—C27 | 1.5308 (16) |
C6—H6A | 0.9900 | C24—C25 | 1.5368 (16) |
C6—H6B | 0.9900 | C24—H24 | 1.0000 |
C7—C10 | 1.5349 (16) | C25—H25A | 0.9900 |
C7—C8 | 1.5362 (16) | C25—H25B | 0.9900 |
C7—H7 | 1.0000 | C26—H26A | 0.9900 |
C8—H8A | 0.9900 | C26—H26B | 0.9900 |
C8—H8B | 0.9900 | C27—H27A | 0.9900 |
C9—H9A | 0.9900 | C27—H27B | 0.9900 |
C9—H9B | 0.9900 | C29—C30 | 1.3937 (18) |
C10—H10A | 0.9900 | C29—C34 | 1.3926 (18) |
C10—H10B | 0.9900 | C30—C31 | 1.3891 (18) |
C12—C13 | 1.3894 (18) | C30—H30 | 0.9500 |
C12—C17 | 1.3917 (18) | C31—C32 | 1.386 (2) |
C13—C14 | 1.3919 (18) | C31—H31 | 0.9500 |
C13—H13 | 0.9500 | C32—C33 | 1.3902 (19) |
C14—C15 | 1.381 (2) | C32—H32 | 0.9500 |
C14—H14 | 0.9500 | C33—C34 | 1.3907 (18) |
C15—C16 | 1.386 (2) | C33—H33 | 0.9500 |
C15—H15 | 0.9500 | C34—H34 | 0.9500 |
C12—S1—C11 | 102.49 (6) | C12—C17—H17 | 120.4 |
C29—S2—C28 | 102.86 (6) | C28—C18—C25 | 114.10 (10) |
C11—C1—C2 | 109.59 (9) | C28—C18—C19 | 108.16 (9) |
C11—C1—C8 | 110.32 (9) | C25—C18—C19 | 109.05 (9) |
C2—C1—C8 | 109.07 (9) | C28—C18—C26 | 107.72 (9) |
C11—C1—C9 | 109.68 (9) | C25—C18—C26 | 108.69 (9) |
C2—C1—C9 | 109.26 (9) | C19—C18—C26 | 109.00 (9) |
C8—C1—C9 | 108.91 (9) | C20—C19—C18 | 109.60 (9) |
C3—C2—C1 | 109.73 (9) | C20—C19—H19A | 109.8 |
C3—C2—H2A | 109.7 | C18—C19—H19A | 109.8 |
C1—C2—H2A | 109.7 | C20—C19—H19B | 109.8 |
C3—C2—H2B | 109.7 | C18—C19—H19B | 109.8 |
C1—C2—H2B | 109.7 | H19A—C19—H19B | 108.2 |
H2A—C2—H2B | 108.2 | C21—C20—C27 | 109.38 (10) |
C10—C3—C2 | 109.92 (10) | C21—C20—C19 | 109.20 (10) |
C10—C3—C4 | 109.36 (10) | C27—C20—C19 | 110.03 (10) |
C2—C3—C4 | 109.45 (10) | C21—C20—H20 | 109.4 |
C10—C3—H3 | 109.4 | C27—C20—H20 | 109.4 |
C2—C3—H3 | 109.4 | C19—C20—H20 | 109.4 |
C4—C3—H3 | 109.4 | C22—C21—C20 | 109.54 (10) |
C5—C4—C3 | 109.37 (9) | C22—C21—H21A | 109.8 |
C5—C4—H4A | 109.8 | C20—C21—H21A | 109.8 |
C3—C4—H4A | 109.8 | C22—C21—H21B | 109.8 |
C5—C4—H4B | 109.8 | C20—C21—H21B | 109.8 |
C3—C4—H4B | 109.8 | H21A—C21—H21B | 108.2 |
H4A—C4—H4B | 108.2 | C21—C22—C26 | 109.73 (10) |
C9—C5—C6 | 109.35 (9) | C21—C22—C23 | 109.30 (10) |
C9—C5—C4 | 109.55 (10) | C26—C22—C23 | 109.58 (10) |
C6—C5—C4 | 109.72 (10) | C21—C22—H22 | 109.4 |
C9—C5—H5 | 109.4 | C26—C22—H22 | 109.4 |
C6—C5—H5 | 109.4 | C23—C22—H22 | 109.4 |
C4—C5—H5 | 109.4 | C24—C23—C22 | 109.24 (9) |
C7—C6—C5 | 109.55 (9) | C24—C23—H23A | 109.8 |
C7—C6—H6A | 109.8 | C22—C23—H23A | 109.8 |
C5—C6—H6A | 109.8 | C24—C23—H23B | 109.8 |
C7—C6—H6B | 109.8 | C22—C23—H23B | 109.8 |
C5—C6—H6B | 109.8 | H23A—C23—H23B | 108.3 |
H6A—C6—H6B | 108.2 | C27—C24—C23 | 109.71 (10) |
C6—C7—C10 | 109.45 (9) | C27—C24—C25 | 109.04 (10) |
C6—C7—C8 | 109.29 (9) | C23—C24—C25 | 109.83 (10) |
C10—C7—C8 | 109.63 (10) | C27—C24—H24 | 109.4 |
C6—C7—H7 | 109.5 | C23—C24—H24 | 109.4 |
C10—C7—H7 | 109.5 | C25—C24—H24 | 109.4 |
C8—C7—H7 | 109.5 | C18—C25—C24 | 110.28 (9) |
C7—C8—C1 | 109.86 (9) | C18—C25—H25A | 109.6 |
C7—C8—H8A | 109.7 | C24—C25—H25A | 109.6 |
C1—C8—H8A | 109.7 | C18—C25—H25B | 109.6 |
C7—C8—H8B | 109.7 | C24—C25—H25B | 109.6 |
C1—C8—H8B | 109.7 | H25A—C25—H25B | 108.1 |
H8A—C8—H8B | 108.2 | C22—C26—C18 | 109.94 (9) |
C5—C9—C1 | 109.64 (9) | C22—C26—H26A | 109.7 |
C5—C9—H9A | 109.7 | C18—C26—H26A | 109.7 |
C1—C9—H9A | 109.7 | C22—C26—H26B | 109.7 |
C5—C9—H9B | 109.7 | C18—C26—H26B | 109.7 |
C1—C9—H9B | 109.7 | H26A—C26—H26B | 108.2 |
H9A—C9—H9B | 108.2 | C24—C27—C20 | 109.31 (9) |
C3—C10—C7 | 109.37 (9) | C24—C27—H27A | 109.8 |
C3—C10—H10A | 109.8 | C20—C27—H27A | 109.8 |
C7—C10—H10A | 109.8 | C24—C27—H27B | 109.8 |
C3—C10—H10B | 109.8 | C20—C27—H27B | 109.8 |
C7—C10—H10B | 109.8 | H27A—C27—H27B | 108.3 |
H10A—C10—H10B | 108.2 | O2—C28—C18 | 123.17 (11) |
O1—C11—C1 | 124.03 (11) | O2—C28—S2 | 122.56 (9) |
O1—C11—S1 | 122.73 (9) | C18—C28—S2 | 114.26 (8) |
C1—C11—S1 | 113.24 (8) | C30—C29—C34 | 120.65 (11) |
C13—C12—C17 | 120.87 (12) | C30—C29—S2 | 117.47 (10) |
C13—C12—S1 | 118.15 (10) | C34—C29—S2 | 121.66 (10) |
C17—C12—S1 | 120.90 (10) | C31—C30—C29 | 119.34 (12) |
C12—C13—C14 | 119.10 (13) | C31—C30—H30 | 120.3 |
C12—C13—H13 | 120.4 | C29—C30—H30 | 120.3 |
C14—C13—H13 | 120.4 | C32—C31—C30 | 120.40 (12) |
C15—C14—C13 | 120.47 (13) | C32—C31—H31 | 119.8 |
C15—C14—H14 | 119.8 | C30—C31—H31 | 119.8 |
C13—C14—H14 | 119.8 | C31—C32—C33 | 120.01 (12) |
C14—C15—C16 | 120.01 (12) | C31—C32—H32 | 120.0 |
C14—C15—H15 | 120.0 | C33—C32—H32 | 120.0 |
C16—C15—H15 | 120.0 | C34—C33—C32 | 120.26 (12) |
C15—C16—C17 | 120.42 (13) | C34—C33—H33 | 119.9 |
C15—C16—H16 | 119.8 | C32—C33—H33 | 119.9 |
C17—C16—H16 | 119.8 | C33—C34—C29 | 119.33 (12) |
C16—C17—C12 | 119.13 (13) | C33—C34—H34 | 120.3 |
C16—C17—H17 | 120.4 | C29—C34—H34 | 120.3 |
C11—C1—C2—C3 | −179.65 (9) | C28—C18—C19—C20 | −176.73 (9) |
C8—C1—C2—C3 | 59.48 (12) | C25—C18—C19—C20 | 58.66 (12) |
C9—C1—C2—C3 | −59.46 (12) | C26—C18—C19—C20 | −59.87 (12) |
C1—C2—C3—C10 | −59.96 (12) | C18—C19—C20—C21 | 60.67 (12) |
C1—C2—C3—C4 | 60.17 (12) | C18—C19—C20—C27 | −59.40 (12) |
C10—C3—C4—C5 | 60.16 (12) | C27—C20—C21—C22 | 60.01 (13) |
C2—C3—C4—C5 | −60.31 (12) | C19—C20—C21—C22 | −60.45 (12) |
C3—C4—C5—C9 | 60.34 (12) | C20—C21—C22—C26 | 59.90 (13) |
C3—C4—C5—C6 | −59.71 (12) | C20—C21—C22—C23 | −60.30 (13) |
C9—C5—C6—C7 | −60.61 (12) | C21—C22—C23—C24 | 60.27 (12) |
C4—C5—C6—C7 | 59.56 (12) | C26—C22—C23—C24 | −60.02 (12) |
C5—C6—C7—C10 | −59.76 (12) | C22—C23—C24—C27 | −60.40 (12) |
C5—C6—C7—C8 | 60.31 (12) | C22—C23—C24—C25 | 59.43 (12) |
C6—C7—C8—C1 | −60.07 (12) | C28—C18—C25—C24 | 179.25 (9) |
C10—C7—C8—C1 | 59.89 (12) | C19—C18—C25—C24 | −59.70 (12) |
C11—C1—C8—C7 | 179.96 (9) | C26—C18—C25—C24 | 59.03 (12) |
C2—C1—C8—C7 | −59.63 (12) | C27—C24—C25—C18 | 60.66 (12) |
C9—C1—C8—C7 | 59.53 (12) | C23—C24—C25—C18 | −59.58 (13) |
C6—C5—C9—C1 | 60.35 (12) | C21—C22—C26—C18 | −59.45 (13) |
C4—C5—C9—C1 | −59.92 (12) | C23—C22—C26—C18 | 60.57 (12) |
C11—C1—C9—C5 | 179.52 (9) | C28—C18—C26—C22 | 176.34 (9) |
C2—C1—C9—C5 | 59.38 (12) | C25—C18—C26—C22 | −59.56 (12) |
C8—C1—C9—C5 | −59.66 (12) | C19—C18—C26—C22 | 59.20 (12) |
C2—C3—C10—C7 | 59.66 (12) | C23—C24—C27—C20 | 60.11 (12) |
C4—C3—C10—C7 | −60.52 (12) | C25—C24—C27—C20 | −60.21 (12) |
C6—C7—C10—C3 | 60.32 (12) | C21—C20—C27—C24 | −59.75 (13) |
C8—C7—C10—C3 | −59.55 (12) | C19—C20—C27—C24 | 60.20 (12) |
C2—C1—C11—O1 | −1.39 (16) | C25—C18—C28—O2 | −173.14 (11) |
C8—C1—C11—O1 | 118.72 (12) | C19—C18—C28—O2 | 65.32 (14) |
C9—C1—C11—O1 | −121.32 (12) | C26—C18—C28—O2 | −52.37 (15) |
C2—C1—C11—S1 | 178.25 (8) | C25—C18—C28—S2 | 6.81 (13) |
C8—C1—C11—S1 | −61.65 (10) | C19—C18—C28—S2 | −114.73 (9) |
C9—C1—C11—S1 | 58.32 (11) | C26—C18—C28—S2 | 127.58 (9) |
C12—S1—C11—O1 | 1.36 (12) | C29—S2—C28—O2 | 4.68 (12) |
C12—S1—C11—C1 | −178.29 (8) | C29—S2—C28—C18 | −175.27 (8) |
C11—S1—C12—C13 | −122.88 (10) | C28—S2—C29—C30 | 118.64 (10) |
C11—S1—C12—C17 | 60.50 (11) | C28—S2—C29—C34 | −66.73 (11) |
C17—C12—C13—C14 | 0.09 (18) | C34—C29—C30—C31 | −0.55 (19) |
S1—C12—C13—C14 | −176.54 (9) | S2—C29—C30—C31 | 174.15 (10) |
C12—C13—C14—C15 | −0.74 (19) | C29—C30—C31—C32 | 0.8 (2) |
C13—C14—C15—C16 | 0.6 (2) | C30—C31—C32—C33 | −0.1 (2) |
C14—C15—C16—C17 | 0.3 (2) | C31—C32—C33—C34 | −1.0 (2) |
C15—C16—C17—C12 | −0.92 (19) | C32—C33—C34—C29 | 1.24 (19) |
C13—C12—C17—C16 | 0.74 (18) | C30—C29—C34—C33 | −0.48 (19) |
S1—C12—C17—C16 | 177.27 (10) | S2—C29—C34—C33 | −174.95 (10) |
Cg1 and Cg2 are the centroids of the C12–C17 and C29–C34 benzene rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
C22—H22···Cg1i | 1.00 | 2.81 | 3.6129 (13) | 138 |
C34—H34···Cg1 | 0.95 | 2.73 | 3.4234 (14) | 131 |
C15—H15···Cg2ii | 0.95 | 2.86 | 3.6668 (16) | 143 |
Symmetry codes: (i) x, y, z+1; (ii) x, −y−1/2, z−3/2. |
Experimental details
Crystal data | |
Chemical formula | C17H20OS |
Mr | 272.39 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 6.3545 (1), 39.4559 (5), 11.3878 (1) |
β (°) | 99.879 (1) |
V (Å3) | 2812.84 (6) |
Z | 8 |
Radiation type | Cu Kα |
µ (mm−1) | 1.94 |
Crystal size (mm) | 0.30 × 0.25 × 0.20 |
Data collection | |
Diffractometer | Agilent SuperNova Dual diffractometer with an Atlas detector |
Absorption correction | Multi-scan (CrysAlis PRO; Agilent, 2012) |
Tmin, Tmax | 0.881, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11270, 5753, 5445 |
Rint | 0.015 |
(sin θ/λ)max (Å−1) | 0.631 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.033, 0.087, 1.02 |
No. of reflections | 5753 |
No. of parameters | 343 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.30, −0.40 |
Computer programs: CrysAlis PRO (Agilent, 2012), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), DIAMOND (Brandenburg, 2006) and QMol (Gans & Shalloway, 2001), publCIF (Westrip, 2010).
Cg1 and Cg2 are the centroids of the C12–C17 and C29–C34 benzene rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
C22—H22···Cg1i | 1.00 | 2.81 | 3.6129 (13) | 138 |
C34—H34···Cg1 | 0.95 | 2.73 | 3.4234 (14) | 131 |
C15—H15···Cg2ii | 0.95 | 2.86 | 3.6668 (16) | 143 |
Symmetry codes: (i) x, y, z+1; (ii) x, −y−1/2, z−3/2. |
Footnotes
‡Additional correspondence author, e-mail: adelazaba@yahoo.com.
Acknowledgements
We thank the Deanship of Scientific Research and the Research Center of the College of Pharmacy, King Saud University. We also thank the Ministry of Higher Education (Malaysia) for funding structural studies through the High-Impact Research scheme (UM.C/HIR/MOHE/SC/12).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
It is widely known that thioesters are useful building blocks for organic transformations, for example thioesters are important in many areas of organic chemistry, particularly in peptide, protein, and β-lactam synthesis (Shah et al., 2002). Furthermore, they find application in peptide bond formation (Manabe et al., 2007) and in natural product synthesis (Horst et al., 2007). The title compound, S-phenyl adamantane-1-carbothioate (I) was synthesized according to El-Azab & Abdel-Aziz (2012) and herein, we describe its crystal structure determination.
Two independent molecules comprise the asymmetric unit of (I), Fig. 1. As seen from the overlay diagram, Fig. 2, there are non-trivial differences between the molecules when the S1-containing molecule is superimposed with the inverted S2-containing molecule. The dihedral angle between the plane through the COS atoms and the S-bound phenyl ring is 58.95 (6)° for the S1-containing molecule and 62.28 (6)° for the S2-containing molecule. There is a more dramatic difference in the relative orientations between the COS residue and the adamantyl group. This is best quantified in the values of the C2—C1—C11—S1 and C25—C18—C28—S2 torsion angles of 178.25 (8) and 6.81 (13)°, respectively, i.e. where there is an almost co-planar relationship between the S and one methylene-C atom. The difference arises in the the S1 atom has anti relationship with the co-planar methylene-C atom and the S2 atom has a syn relationship.
In the crystal packing, C—H···π interactions are formed with the C12—C17 ring forming two such interactions, Table 1. The result is the formation of a supramolecular layer in the ac plane with the adamantyl groups inter-digitating along the b axis, Fig. 2.