metal-organic compounds
Diaquabis(nitrato-κ2O,O′)bis(pyrazine-2-carboxamide-κN4)cadmium–pyrazine-2-carboxamide (1/2)
aDepartment of Chemistry, Omidieh Branch, Islamic Azad University, Omidieh, Iran
*Correspondence e-mail: sadif.shirvan1@gmail.com
In the title compound, [Cd(NO3)2(C5H5N3O)2(H2O)2]·2C5H5N3O, the CdII cation is located on a twofold rotation axis and is coordinated by two pyrazine-2-carboxamide ligands and two water molecules and chelated by two nitrate anions in a distorted square-antiprismatic geometry. Extensive intermolecular N—H⋯O, N—H⋯N, O—H⋯O and O—H⋯N hydrogen bonds, as well as weak intermolecular C—H⋯N and C—H⋯O interactions occur in the crystal. π–π stacking between between pyrazine rings of coordinating ligands and lattice molecules [centroid–centroid distance = 3.5669 (14) Å] may further stabilize the structure.
Related literature
For related structures, see: Abu-Youssef et al. (2006); Azhdari Tehrani et al. (2010); Goher & Mautner (2000); Kristiansson (2002); Mir Mohammad Sadegh et al. (2010); Munakata et al. (1997); Pacigova et al. (2008); Shirvan & Haydari Dezfuli (2012a,b,c).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536812028577/xu5577sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812028577/xu5577Isup2.hkl
A solution of pyrazine-2-carboxamide (0.50 g, 4.0 mmol) in methanol (10 ml) was added to a solution of Cd(NO3)2.4H2O (0.31 g, 1.0 mmol) in methanol (10 ml) and the resulting colorless solution was stirred for 15 min at room temperature. This solution was left to evaporate slowly at room temperature. After one week, colorless block crystals of the title compound were isolated (yield 0.56 g, 73.2%).
H atoms were positioned geometrically with C—H = 0.93 and N—H = 0.86 Å, and constrained to ride on their parent atoms, Uiso(H) = 1.2Ueq(N,C).
Pyrazine-2-carboxamide (pzc), is a good ligand, and a few complexes with pzc have been prepared, such as that of mercury (Azhdari Tehrani et al., 2010; Mir Mohammad Sadegh et al., 2010), vanadium (Pacigova et al., 2008), manganese (Abu-Youssef et al., 2006), copper (Kristiansson, 2002; Munakata et al., 1997; Goher & Mautner, 2000) and zinc (Shirvan & Haydari Dezfuli, 2012a,b,c). Here, we report the synthesis and structure of the title compound.
The
of the title compound, (Fig. 1), contains one half of CdII atom, one coordinated pyrazine-2-carboxamide ligand, one water molecule, one nitrate anion and one none coordinated pyrazine-2-carboxamide. The CdII atom is eight-coordinated by two N atoms from two pyrazine-2-carboxamide ligands, two O atoms from two water molecules and four O atoms from two nitrate anions. The Cd—O and Cd—N bond lengths and angles are collected in Table 1.In the π-π contacts (Fig. 2) between the pyrazine rings, Cg1—Cg2i [symmetry cods: (i) 1-X,-Y,1-Z, where Cg1 and Cg2 are centroids of the rings (N1/C2—C3/N2/C1/C4) and (N5/C7—C8/N6/C6/C9), respectively] may stabilize the structure, with centroid-centroid distance of 3.5669 (14) Å.
intra and intermolecular N—H···O, N—H···N, O—H···O, C—H···N and C—H···O hydrogen bonds (Table 2) andFor related structures, see: Abu-Youssef et al. (2006); Azhdari Tehrani et al. (2010); Goher & Mautner (2000); Kristiansson (2002); Mir Mohammad Sadegh et al. (2010); Munakata et al. (1997); Pacigova et al. (2008); Shirvan & Haydari Dezfuli (2012a,b,c).
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of the title molecule, with the atom-numbering scheme. Displacement ellipsoids are drawn at the 30% probability level. [Symmetry codes: (a) 1 - x,y,3/2 - z]. | |
Fig. 2. Unit-cell packing diagram for title molecule. Hydrogen bonds are shown as dashed lines. |
[Cd(NO3)2(C5H5N3O)2(H2O)2]·2C5H5N3O | F(000) = 1544 |
Mr = 764.94 | Dx = 1.778 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 15388 reflections |
a = 13.5650 (5) Å | θ = 2.6–29.2° |
b = 6.7845 (3) Å | µ = 0.85 mm−1 |
c = 31.2031 (11) Å | T = 298 K |
β = 95.665 (3)° | Block, colorless |
V = 2857.65 (19) Å3 | 0.22 × 0.21 × 0.20 mm |
Z = 4 |
Bruker APEXII CCD area-detector diffractometer | 3850 independent reflections |
Radiation source: fine-focus sealed tube | 3099 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.067 |
ω scans | θmax = 29.2°, θmin = 2.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −15→18 |
Tmin = 0.835, Tmax = 0.865 | k = −9→9 |
15388 measured reflections | l = −42→42 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.069 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0281P)2] where P = (Fo2 + 2Fc2)/3 |
3850 reflections | (Δ/σ)max = 0.006 |
221 parameters | Δρmax = 0.44 e Å−3 |
2 restraints | Δρmin = −0.51 e Å−3 |
[Cd(NO3)2(C5H5N3O)2(H2O)2]·2C5H5N3O | V = 2857.65 (19) Å3 |
Mr = 764.94 | Z = 4 |
Monoclinic, C2/c | Mo Kα radiation |
a = 13.5650 (5) Å | µ = 0.85 mm−1 |
b = 6.7845 (3) Å | T = 298 K |
c = 31.2031 (11) Å | 0.22 × 0.21 × 0.20 mm |
β = 95.665 (3)° |
Bruker APEXII CCD area-detector diffractometer | 3850 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | 3099 reflections with I > 2σ(I) |
Tmin = 0.835, Tmax = 0.865 | Rint = 0.067 |
15388 measured reflections |
R[F2 > 2σ(F2)] = 0.039 | 2 restraints |
wR(F2) = 0.069 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.44 e Å−3 |
3850 reflections | Δρmin = −0.51 e Å−3 |
221 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.56965 (17) | 0.2539 (3) | 0.65471 (7) | 0.0297 (5) | |
H1 | 0.5493 | 0.1230 | 0.6550 | 0.036* | |
C2 | 0.5882 (2) | 0.5543 (3) | 0.68646 (8) | 0.0360 (6) | |
H2 | 0.5799 | 0.6396 | 0.7092 | 0.043* | |
C3 | 0.6311 (2) | 0.6240 (4) | 0.65109 (8) | 0.0388 (6) | |
H3 | 0.6524 | 0.7543 | 0.6510 | 0.047* | |
C4 | 0.61084 (17) | 0.3260 (3) | 0.61922 (7) | 0.0271 (5) | |
C5 | 0.61752 (18) | 0.1922 (3) | 0.58134 (7) | 0.0309 (5) | |
C6 | 0.6697 (2) | −0.3057 (4) | 0.40570 (8) | 0.0409 (6) | |
H6 | 0.6978 | −0.1827 | 0.4018 | 0.049* | |
C7 | 0.6301 (2) | −0.6120 (4) | 0.38209 (9) | 0.0407 (6) | |
H7 | 0.6307 | −0.7109 | 0.3615 | 0.049* | |
C8 | 0.5894 (2) | −0.6511 (4) | 0.41992 (9) | 0.0401 (6) | |
H8 | 0.5617 | −0.7745 | 0.4237 | 0.048* | |
C9 | 0.63094 (18) | −0.3443 (3) | 0.44398 (7) | 0.0294 (5) | |
C10 | 0.63336 (19) | −0.1919 (3) | 0.47903 (8) | 0.0323 (5) | |
N1 | 0.64298 (17) | 0.5111 (3) | 0.61710 (7) | 0.0349 (5) | |
N2 | 0.55839 (15) | 0.3686 (3) | 0.68886 (6) | 0.0288 (4) | |
N3 | 0.66404 (16) | 0.2610 (3) | 0.54907 (6) | 0.0400 (5) | |
H3B | 0.6688 | 0.1894 | 0.5266 | 0.048* | |
H3C | 0.6895 | 0.3772 | 0.5506 | 0.048* | |
N4 | 0.58381 (19) | −0.2357 (3) | 0.51183 (7) | 0.0473 (6) | |
H4B | 0.5827 | −0.1543 | 0.5329 | 0.057* | |
H4A | 0.5525 | −0.3458 | 0.5122 | 0.057* | |
N5 | 0.58844 (17) | −0.5180 (3) | 0.45120 (7) | 0.0357 (5) | |
N6 | 0.66844 (19) | −0.4378 (4) | 0.37415 (7) | 0.0457 (6) | |
N7 | 0.35495 (17) | −0.0688 (3) | 0.72058 (7) | 0.0381 (5) | |
O1 | 0.57917 (17) | 0.0284 (3) | 0.58187 (6) | 0.0502 (5) | |
O2 | 0.68015 (15) | −0.0373 (3) | 0.47604 (6) | 0.0452 (5) | |
O3 | 0.35625 (17) | 0.3987 (4) | 0.72005 (7) | 0.0526 (5) | |
H3D | 0.341 (3) | 0.410 (5) | 0.6940 (4) | 0.068 (11)* | |
H3E | 0.3053 (18) | 0.407 (6) | 0.7322 (12) | 0.085 (14)* | |
O4 | 0.41705 (19) | −0.0161 (3) | 0.69628 (8) | 0.0698 (7) | |
O5 | 0.3670 (2) | −0.0147 (3) | 0.75901 (7) | 0.0651 (7) | |
O6 | 0.28421 (17) | −0.1698 (3) | 0.70757 (9) | 0.0702 (7) | |
Cd1 | 0.5000 | 0.22584 (4) | 0.7500 | 0.03053 (8) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0371 (12) | 0.0264 (11) | 0.0269 (10) | −0.0051 (9) | 0.0093 (9) | −0.0015 (9) |
C2 | 0.0477 (16) | 0.0323 (12) | 0.0292 (13) | −0.0037 (11) | 0.0087 (11) | −0.0067 (9) |
C3 | 0.0531 (17) | 0.0288 (12) | 0.0356 (14) | −0.0102 (11) | 0.0106 (12) | −0.0035 (10) |
C4 | 0.0290 (12) | 0.0297 (11) | 0.0230 (11) | −0.0047 (9) | 0.0042 (9) | −0.0015 (8) |
C5 | 0.0366 (13) | 0.0343 (12) | 0.0228 (11) | −0.0046 (10) | 0.0078 (10) | −0.0024 (9) |
C6 | 0.0480 (16) | 0.0442 (14) | 0.0325 (13) | −0.0153 (12) | 0.0143 (12) | −0.0046 (11) |
C7 | 0.0437 (16) | 0.0435 (14) | 0.0354 (14) | 0.0006 (12) | 0.0059 (12) | −0.0118 (11) |
C8 | 0.0485 (16) | 0.0320 (12) | 0.0404 (15) | −0.0047 (11) | 0.0071 (13) | −0.0063 (10) |
C9 | 0.0299 (12) | 0.0347 (11) | 0.0238 (11) | −0.0058 (9) | 0.0042 (10) | −0.0018 (9) |
C10 | 0.0366 (13) | 0.0333 (12) | 0.0275 (12) | −0.0060 (10) | 0.0047 (10) | −0.0025 (9) |
N1 | 0.0441 (13) | 0.0321 (10) | 0.0298 (11) | −0.0089 (9) | 0.0102 (10) | 0.0020 (8) |
N2 | 0.0314 (11) | 0.0322 (10) | 0.0237 (10) | −0.0026 (8) | 0.0072 (8) | −0.0028 (7) |
N3 | 0.0525 (13) | 0.0427 (12) | 0.0274 (9) | −0.0133 (10) | 0.0171 (9) | −0.0060 (9) |
N4 | 0.0688 (15) | 0.0409 (12) | 0.0364 (11) | −0.0256 (11) | 0.0254 (11) | −0.0140 (10) |
N5 | 0.0453 (13) | 0.0313 (10) | 0.0318 (11) | −0.0063 (9) | 0.0096 (10) | −0.0002 (8) |
N6 | 0.0517 (15) | 0.0558 (14) | 0.0316 (12) | −0.0092 (11) | 0.0136 (11) | −0.0071 (10) |
N7 | 0.0377 (13) | 0.0308 (11) | 0.0468 (14) | −0.0010 (9) | 0.0088 (11) | −0.0010 (9) |
O1 | 0.0752 (15) | 0.0408 (10) | 0.0390 (11) | −0.0237 (10) | 0.0281 (10) | −0.0141 (8) |
O2 | 0.0569 (13) | 0.0402 (10) | 0.0411 (11) | −0.0225 (9) | 0.0175 (10) | −0.0087 (8) |
O3 | 0.0475 (14) | 0.0815 (15) | 0.0305 (11) | 0.0188 (11) | 0.0128 (10) | 0.0083 (10) |
O4 | 0.0758 (17) | 0.0646 (14) | 0.0773 (17) | −0.0271 (12) | 0.0495 (14) | −0.0193 (12) |
O5 | 0.107 (2) | 0.0472 (12) | 0.0426 (13) | −0.0008 (12) | 0.0159 (13) | −0.0011 (9) |
O6 | 0.0452 (13) | 0.0619 (14) | 0.103 (2) | −0.0182 (11) | 0.0033 (13) | −0.0088 (13) |
Cd1 | 0.03867 (15) | 0.03185 (13) | 0.02309 (12) | 0.000 | 0.01321 (10) | 0.000 |
Cd1—O3 | 2.386 (2) | N3—H3C | 0.8600 |
Cd1—O4 | 2.529 (2) | N4—C10 | 1.313 (3) |
Cd1—O5 | 2.469 (2) | N5—C8 | 1.331 (3) |
Cd1—N2 | 2.3459 (19) | N5—C9 | 1.341 (3) |
Cd1—O3i | 2.386 (2) | N6—C7 | 1.324 (4) |
Cd1—O4i | 2.529 (2) | N6—C6 | 1.330 (4) |
Cd1—O5i | 2.469 (2) | N4—H4B | 0.8600 |
Cd1—N2i | 2.3459 (19) | N4—H4A | 0.8600 |
O1—C5 | 1.228 (3) | C1—C4 | 1.378 (3) |
O4—N7 | 1.240 (3) | C2—C3 | 1.381 (4) |
O5—N7 | 1.249 (3) | C4—C5 | 1.500 (3) |
O6—N7 | 1.216 (3) | C1—H1 | 0.9300 |
O3—H3D | 0.822 (14) | C2—H2 | 0.9300 |
O3—H3E | 0.82 (3) | C3—H3 | 0.9300 |
O2—C10 | 1.234 (3) | C6—C9 | 1.377 (3) |
N1—C3 | 1.331 (3) | C7—C8 | 1.377 (4) |
N1—C4 | 1.333 (3) | C9—C10 | 1.503 (3) |
N2—C2 | 1.328 (3) | C6—H6 | 0.9300 |
N2—C1 | 1.340 (3) | C7—H7 | 0.9300 |
N3—C5 | 1.325 (3) | C8—H8 | 0.9300 |
N3—H3B | 0.8600 | ||
O3—Cd1—O4 | 76.50 (8) | O5—N7—O6 | 120.7 (3) |
O3—Cd1—O5 | 77.96 (8) | H3B—N3—H3C | 120.00 |
O3—Cd1—N2 | 78.87 (7) | C5—N3—H3B | 120.00 |
O3—Cd1—O3i | 121.11 (9) | C5—N3—H3C | 120.00 |
O3—Cd1—O4i | 150.64 (8) | C8—N5—C9 | 116.0 (2) |
O3—Cd1—O5i | 149.14 (8) | C6—N6—C7 | 116.1 (2) |
O3—Cd1—N2i | 77.71 (7) | C10—N4—H4B | 120.00 |
O4—Cd1—O5 | 50.53 (8) | C10—N4—H4A | 120.00 |
O4—Cd1—N2 | 83.85 (7) | H4A—N4—H4B | 120.00 |
O3i—Cd1—O4 | 150.64 (8) | N2—C1—C4 | 121.31 (19) |
O4—Cd1—O4i | 99.08 (7) | N2—C2—C3 | 121.7 (2) |
O4—Cd1—O5i | 77.17 (8) | N1—C3—C2 | 122.2 (2) |
O4—Cd1—N2i | 130.02 (8) | C1—C4—C5 | 118.62 (19) |
O5—Cd1—N2 | 132.42 (7) | N1—C4—C5 | 119.0 (2) |
O3i—Cd1—O5 | 149.14 (8) | N1—C4—C1 | 122.3 (2) |
O4i—Cd1—O5 | 77.17 (8) | N3—C5—C4 | 117.13 (19) |
O5—Cd1—O5i | 97.26 (8) | O1—C5—C4 | 118.6 (2) |
O5—Cd1—N2i | 82.60 (7) | O1—C5—N3 | 124.3 (2) |
O3i—Cd1—N2 | 77.71 (7) | C4—C1—H1 | 119.00 |
O4i—Cd1—N2 | 130.02 (8) | N2—C1—H1 | 119.00 |
O5i—Cd1—N2 | 82.60 (7) | C3—C2—H2 | 119.00 |
N2—Cd1—N2i | 131.23 (7) | N2—C2—H2 | 119.00 |
O3i—Cd1—O4i | 76.50 (8) | C2—C3—H3 | 119.00 |
O3i—Cd1—O5i | 77.96 (8) | N1—C3—H3 | 119.00 |
O3i—Cd1—N2i | 78.87 (7) | N6—C6—C9 | 122.4 (2) |
O4i—Cd1—O5i | 50.53 (8) | N6—C7—C8 | 122.0 (3) |
O4i—Cd1—N2i | 83.85 (7) | N5—C8—C7 | 122.1 (2) |
O5i—Cd1—N2i | 132.42 (7) | C6—C9—C10 | 121.2 (2) |
Cd1—O4—N7 | 93.81 (16) | N5—C9—C6 | 121.4 (2) |
Cd1—O5—N7 | 96.47 (16) | N5—C9—C10 | 117.5 (2) |
H3D—O3—H3E | 108 (4) | O2—C10—N4 | 123.9 (2) |
Cd1—O3—H3D | 123 (3) | O2—C10—C9 | 120.3 (2) |
Cd1—O3—H3E | 123 (3) | N4—C10—C9 | 115.8 (2) |
C3—N1—C4 | 115.9 (2) | N6—C6—H6 | 119.00 |
C1—N2—C2 | 116.5 (2) | C9—C6—H6 | 119.00 |
Cd1—N2—C1 | 118.75 (15) | N6—C7—H7 | 119.00 |
Cd1—N2—C2 | 124.53 (16) | C8—C7—H7 | 119.00 |
O4—N7—O6 | 121.3 (2) | N5—C8—H8 | 119.00 |
O4—N7—O5 | 118.0 (2) | C7—C8—H8 | 119.00 |
O3—Cd1—O4—N7 | −79.22 (16) | Cd1—O4—N7—O6 | 169.2 (2) |
O5—Cd1—O4—N7 | 6.18 (14) | Cd1—O5—N7—O4 | 11.0 (2) |
N2—Cd1—O4—N7 | −159.21 (16) | Cd1—O5—N7—O6 | −168.8 (2) |
O3i—Cd1—O4—N7 | 149.72 (17) | C4—N1—C3—C2 | 0.0 (4) |
O4i—Cd1—O4—N7 | 71.16 (16) | C3—N1—C4—C1 | −1.3 (4) |
O5i—Cd1—O4—N7 | 117.01 (16) | C3—N1—C4—C5 | 177.3 (2) |
N2i—Cd1—O4—N7 | −18.40 (19) | Cd1—N2—C2—C3 | 173.36 (19) |
O3—Cd1—O5—N7 | 76.16 (16) | C1—N2—C2—C3 | −1.7 (4) |
O4—Cd1—O5—N7 | −6.16 (14) | Cd1—N2—C1—C4 | −174.91 (17) |
N2—Cd1—O5—N7 | 13.7 (2) | C2—N2—C1—C4 | 0.5 (3) |
O3i—Cd1—O5—N7 | −151.55 (16) | C8—N5—C9—C10 | −178.6 (2) |
O4i—Cd1—O5—N7 | −119.56 (17) | C9—N5—C8—C7 | −1.0 (4) |
O5i—Cd1—O5—N7 | −72.90 (16) | C8—N5—C9—C6 | 2.3 (4) |
N2i—Cd1—O5—N7 | 155.10 (17) | C6—N6—C7—C8 | 3.1 (4) |
O3—Cd1—N2—C1 | −104.80 (18) | C7—N6—C6—C9 | −1.9 (4) |
O4—Cd1—N2—C1 | −27.40 (17) | N2—C1—C4—C5 | −177.5 (2) |
O5—Cd1—N2—C1 | −42.7 (2) | N2—C1—C4—N1 | 1.1 (4) |
O3i—Cd1—N2—C1 | 129.63 (18) | N2—C2—C3—N1 | 1.6 (4) |
O4i—Cd1—N2—C1 | 69.30 (19) | N1—C4—C5—N3 | 6.2 (3) |
O5i—Cd1—N2—C1 | 50.41 (17) | C1—C4—C5—O1 | 5.6 (3) |
N2i—Cd1—N2—C1 | −167.35 (15) | N1—C4—C5—O1 | −173.1 (2) |
O3—Cd1—N2—C2 | 80.2 (2) | C1—C4—C5—N3 | −175.1 (2) |
O4—Cd1—N2—C2 | 157.6 (2) | N6—C6—C9—N5 | −0.9 (4) |
O5—Cd1—N2—C2 | 142.32 (19) | N6—C6—C9—C10 | −179.9 (2) |
O3i—Cd1—N2—C2 | −45.4 (2) | N6—C7—C8—N5 | −1.8 (4) |
O4i—Cd1—N2—C2 | −105.7 (2) | N5—C9—C10—O2 | 172.7 (2) |
O5i—Cd1—N2—C2 | −124.6 (2) | N5—C9—C10—N4 | −7.1 (3) |
N2i—Cd1—N2—C2 | 17.7 (2) | C6—C9—C10—O2 | −8.2 (4) |
Cd1—O4—N7—O5 | −10.7 (2) | C6—C9—C10—N4 | 172.0 (2) |
Symmetry code: (i) −x+1, y, −z+3/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3D···N6ii | 0.82 (1) | 2.13 (1) | 2.937 (3) | 169 (4) |
O3—H3E···O5iii | 0.82 (3) | 2.44 (3) | 3.215 (4) | 158 (3) |
O3—H3E···O6iii | 0.82 (3) | 2.39 (3) | 3.130 (3) | 150 (3) |
N3—H3B···O2 | 0.86 | 2.22 | 3.072 (3) | 170 |
N3—H3C···O2iv | 0.86 | 2.30 | 2.987 (3) | 137 |
N4—H4A···N5v | 0.86 | 2.50 | 3.180 (3) | 137 |
N4—H4B···O1 | 0.86 | 1.97 | 2.832 (3) | 179 |
C6—H6···N1iv | 0.93 | 2.57 | 3.364 (4) | 143 |
C8—H8···O1v | 0.93 | 2.57 | 3.429 (3) | 155 |
Symmetry codes: (ii) −x+1, −y, −z+1; (iii) −x+1/2, y+1/2, −z+3/2; (iv) −x+3/2, −y+1/2, −z+1; (v) −x+1, −y−1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Cd(NO3)2(C5H5N3O)2(H2O)2]·2C5H5N3O |
Mr | 764.94 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 298 |
a, b, c (Å) | 13.5650 (5), 6.7845 (3), 31.2031 (11) |
β (°) | 95.665 (3) |
V (Å3) | 2857.65 (19) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.85 |
Crystal size (mm) | 0.22 × 0.21 × 0.20 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2001) |
Tmin, Tmax | 0.835, 0.865 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 15388, 3850, 3099 |
Rint | 0.067 |
(sin θ/λ)max (Å−1) | 0.685 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.069, 1.02 |
No. of reflections | 3850 |
No. of parameters | 221 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.44, −0.51 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3D···N6i | 0.822 (14) | 2.126 (13) | 2.937 (3) | 169 (4) |
O3—H3E···O5ii | 0.82 (3) | 2.44 (3) | 3.215 (4) | 158 (3) |
O3—H3E···O6ii | 0.82 (3) | 2.39 (3) | 3.130 (3) | 150 (3) |
N3—H3B···O2 | 0.8600 | 2.2200 | 3.072 (3) | 170.00 |
N3—H3C···O2iii | 0.8600 | 2.3000 | 2.987 (3) | 137.00 |
N4—H4A···N5iv | 0.8600 | 2.5000 | 3.180 (3) | 137.00 |
N4—H4B···O1 | 0.8600 | 1.9700 | 2.832 (3) | 179.00 |
C6—H6···N1iii | 0.9300 | 2.5700 | 3.364 (4) | 143.00 |
C8—H8···O1iv | 0.9300 | 2.5700 | 3.429 (3) | 155.00 |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x+1/2, y+1/2, −z+3/2; (iii) −x+3/2, −y+1/2, −z+1; (iv) −x+1, −y−1, −z+1. |
Acknowledgements
We are grateful to the Islamic Azad University, Omidieh Branch, for financial support.
References
Abu-Youssef, M. A. M., Escuer, A. & Langer, V. (2006). Eur. J. Inorg. Chem. pp. 3177–3184. Google Scholar
Azhdari Tehrani, A., Mir Mohammad Sadegh, B. & Khavasi, H. R. (2010). Acta Cryst. E66, m261. Web of Science CSD CrossRef IUCr Journals Google Scholar
Bruker (2001). SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Bruker (2007). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Goher, M. A. S. & Mautner, F. A. (2000). Polyhedron, 19, 601–606. Web of Science CSD CrossRef CAS Google Scholar
Kristiansson, O. (2002). Acta Cryst. E58, m130–m132. Web of Science CSD CrossRef IUCr Journals Google Scholar
Mir Mohammad Sadegh, B., Azhdari Tehrani, A. & Khavasi, H. R. (2010). Acta Cryst. E66, m158. Web of Science CSD CrossRef IUCr Journals Google Scholar
Munakata, M., Wu, L. P., Sowa, T. K., Maekawa, M., Moriwaki, K. & Kitagawa, S. (1997). Inorg. Chem. 36, 5416–5418. CSD CrossRef CAS Web of Science Google Scholar
Pacigova, S., Gyepes, R., Tatiersky, J. & Sivak, M. (2008). Dalton Trans. pp. 121–130. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Shirvan, S. A. & Haydari Dezfuli, S. (2012a). Acta Cryst. E68, m527. CSD CrossRef IUCr Journals Google Scholar
Shirvan, S. A. & Haydari Dezfuli, S. (2012b). Acta Cryst. E68, m627–m628. CSD CrossRef IUCr Journals Google Scholar
Shirvan, S. A. & Haydari Dezfuli, S. (2012c). Acta Cryst. E68, m546. CSD CrossRef IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Pyrazine-2-carboxamide (pzc), is a good ligand, and a few complexes with pzc have been prepared, such as that of mercury (Azhdari Tehrani et al., 2010; Mir Mohammad Sadegh et al., 2010), vanadium (Pacigova et al., 2008), manganese (Abu-Youssef et al., 2006), copper (Kristiansson, 2002; Munakata et al., 1997; Goher & Mautner, 2000) and zinc (Shirvan & Haydari Dezfuli, 2012a,b,c). Here, we report the synthesis and structure of the title compound.
The asymmetric unit of the title compound, (Fig. 1), contains one half of CdII atom, one coordinated pyrazine-2-carboxamide ligand, one water molecule, one nitrate anion and one none coordinated pyrazine-2-carboxamide. The CdII atom is eight-coordinated by two N atoms from two pyrazine-2-carboxamide ligands, two O atoms from two water molecules and four O atoms from two nitrate anions. The Cd—O and Cd—N bond lengths and angles are collected in Table 1.
In the crystal structure, intra and intermolecular N—H···O, N—H···N, O—H···O, C—H···N and C—H···O hydrogen bonds (Table 2) and π-π contacts (Fig. 2) between the pyrazine rings, Cg1—Cg2i [symmetry cods: (i) 1-X,-Y,1-Z, where Cg1 and Cg2 are centroids of the rings (N1/C2—C3/N2/C1/C4) and (N5/C7—C8/N6/C6/C9), respectively] may stabilize the structure, with centroid-centroid distance of 3.5669 (14) Å.