organic compounds
1,6-Bis[(2,2′:6′,2′′-terpyridin-4′-yl)oxy]hexane
aUniversity of KwaZulu-Natal, School of Chemistry and Physics, Private Bag X01, Scottsville 3209, Pietermaritzburg, South Africa
*Correspondence e-mail: 207513620@stu.ukzn.ac.za
The molecule of the title compound, C36H32N6O2, lies about an inversion center, located at the mid-point of the central C—C bond of the diether bridge. The terminal pyridine rings form dihedral angles of 4.67 (7) and 26.23 (7)° with the central ring. In the crystal, weak C—H⋯N and C—H⋯O interactions link the molecules into a three-dimensional network.
Related literature
For the structure of the unsubstituted 2,2′:6′,2"-terpyridine, see: Bessel et al. (1992). For the structure of the precursor to the title compound, 4′-chloro-2,2′:6′,2"-terpyridine, see: Beves et al. (2006). For the structure of the 1,4-bis[(2,2′:6′,2"-terpyridin-4′-yl)oxy]-butane, see: Akerman et al. (2011). For a full review of functionalized 2,2′:6′,2"-terpyridine complexes, see: Fallahpour (2003); Heller & Schubert (2003). For a comprehensive summary of platinum(II) terpyridine complexes, see: Newkome et al. (2008). For the structure of bis(2,2′:6′,2"-terpyridyl)ether, see: Constable et al. (1995). For the structure of related bis(terpyridine) compounds, linked by an alkoxy spacer, see: Constable et al. (2006). For the synthetic procedure, see: Constable et al. (2005); Van der Schilden (2006).
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis CCD (Oxford Diffraction, 2008); cell CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1999); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
https://doi.org/10.1107/S1600536812029017/yk2063sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812029017/yk2063Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536812029017/yk2063Isup3.cml
The title compound was prepared by an adaptation of a previously described method (Van der Schilden, 2006; Constable et al., 2005). Hexanediol (1.13 mmol) was added to a suspension of ground potassium hydroxide (6.69 mmol) in DMSO (30 ml). The solution was heated to reflux for 1 h after which 4'-chloro-2,2':6',2''-terpyridine (2.23 mmol) was added. The mixture was again brought to reflux for an additional 24 h. After cooling to room temperature, the brown mixture was added to cold water (100 ml). The resulting off-white precipitate was filtered, rinsed with cold ethanol and air dried. Single crystals were grown by slow liquid diffusion of n-hexane into a chloroform solution of the compound.
All non-hydrogen atoms were located in the difference Fourier map and refined anisotropically. The positions of all hydrogen atoms were calculated using the riding model with C—H(aromatic) and C—H(methylene) distances of 0.93 Å and Uiso = 1.2 Ueq.
The title compound is the second in a series of ligands developed in an effort to harness multifunctional activity. Coordination of these ligands to platinum(II) should enable covalent binding of DNA through both metal centres, thus increasing the number of adducts formed. Furthermore the presence of the flexible diol derived linkage will provide the complex with the potential to engage in long range interactions with DNA.
The ligand crystallized in the orthorhombic
Pbca, with a half molecule in the and Z = 4. Crystallographically imposed inversion symmetry relates two halves of the ligand. The inversion center is located at the mid-point of the diol linkage. The three pyridine rings adopt a trans, conformation. The same configuration is observed in the parent 4'-chloro-2,2': 6',2''- terpyridine (Beves et al., 2006) and is a common feature of uncoordinated terpyridine ligands in general (Akerman et al., 2011; Bessel et al., 1992).The central pyridine ring of the terpyridine fragment lie in the same plane as the bridging chain. The terminal pyridine rings are, however, canted relative to the central ring. The C7–C6–C5–N1 torsion angle is -25.8 (2)°, while the C9–C10–C11–N3 torsion angle is 4.9 (2)° (Fig. 1). The large torsion angle formed by one of terminal pyridine groups with the central ring is seemingly to allow for interaction between the pyridine N1 atom and the hydrogen atom H4 of an adjacent molecule, with the distance of 2.65 Å. There are also other short contacts C—H···O and C—H···N, ranging from 2.65 to 2.71 Å. These contacts link the molecules into a herringbone pattern (Figure 2). There is no indication of meaningful π··· π or C–H··· π interactions in the lattice, which are often observed in terpyridine structures (Beves et al. 2006).
For the structure of the unsubstituted 2,2':6',2"-terpyridine, see: Bessel et al. (1992). For the structure of the precursor to the title compound, 4'-chloro-2,2':6',2"-terpyridine, see: Beves et al. (2006). For the structure of the 1,4-bis[(2,2':6',2"-terpyridin-4'-yl)oxy]-butane, see: Akerman et al. (2011). For a full review of functionalized 2,2':6',2"-terpyridine complexes, see: Fallahpour (2003); Heller & Schubert (2003). For a comprehensive summary of platinum(II) terpyridine complexes, see: Newkome et al. (2008). For the structure of bis(2,2':6',2"-terpyridyl)ether, see: Constable et al. (1995). For the structure of related bis(terpyridine) compounds, linked by an alkoxy spacer, see: Constable et al. (2006). For the synthetic procedure, see: Constable et al. (2005); Van der Schilden (2006).
Data collection: CrysAlis CCD (Oxford Diffraction, 2008); cell
CrysAlis CCD (Oxford Diffraction, 2008); data reduction: CrysAlis RED (Oxford Diffraction, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1999); software used to prepare material for publication: publCIF (Westrip, 2010).C36H32N6O2 | F(000) = 1224 |
Mr = 580.7 | Dx = 1.330 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 2098 reflections |
a = 15.139 (5) Å | θ = 3.2–26.0° |
b = 11.428 (5) Å | µ = 0.09 mm−1 |
c = 16.760 (5) Å | T = 100 K |
V = 2899.6 (18) Å3 | Needle, colourless |
Z = 4 | 0.40 × 0.20 × 0.20 mm |
Oxford Diffraction Xcalibur 2 CCD diffractometer | 2859 independent reflections |
Radiation source: fine-focus sealed tube | 2098 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.064 |
ω scans at fixed θ angles | θmax = 26.1°, θmin = 3.2° |
Absorption correction: multi-scan (Blessing, 1995) | h = −18→18 |
Tmin = 0.967, Tmax = 0.983 | k = −12→14 |
20354 measured reflections | l = −20→20 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.038 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.100 | H-atom parameters constrained |
S = 0.94 | w = 1/[σ2(Fo2) + (0.0644P)2 + 0.P] where P = (Fo2 + 2Fc2)/3 |
2859 reflections | (Δ/σ)max = 0.001 |
199 parameters | Δρmax = 0.17 e Å−3 |
0 restraints | Δρmin = −0.26 e Å−3 |
C36H32N6O2 | V = 2899.6 (18) Å3 |
Mr = 580.7 | Z = 4 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 15.139 (5) Å | µ = 0.09 mm−1 |
b = 11.428 (5) Å | T = 100 K |
c = 16.760 (5) Å | 0.40 × 0.20 × 0.20 mm |
Oxford Diffraction Xcalibur 2 CCD diffractometer | 2859 independent reflections |
Absorption correction: multi-scan (Blessing, 1995) | 2098 reflections with I > 2σ(I) |
Tmin = 0.967, Tmax = 0.983 | Rint = 0.064 |
20354 measured reflections |
R[F2 > 2σ(F2)] = 0.038 | 0 restraints |
wR(F2) = 0.100 | H-atom parameters constrained |
S = 0.94 | Δρmax = 0.17 e Å−3 |
2859 reflections | Δρmin = −0.26 e Å−3 |
199 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.33229 (9) | 0.02089 (12) | 0.29739 (9) | 0.0207 (3) | |
H1 | 0.3600 | −0.0452 | 0.2738 | 0.025* | |
C2 | 0.34439 (10) | 0.13004 (12) | 0.26216 (9) | 0.0251 (4) | |
H2 | 0.3790 | 0.1379 | 0.2152 | 0.030* | |
C3 | 0.30541 (10) | 0.22649 (12) | 0.29648 (9) | 0.0242 (3) | |
H3 | 0.3124 | 0.3019 | 0.2734 | 0.029* | |
C4 | 0.25569 (9) | 0.21180 (12) | 0.36541 (8) | 0.0203 (3) | |
H4 | 0.2288 | 0.2770 | 0.3907 | 0.024* | |
C5 | 0.24615 (9) | 0.10061 (12) | 0.39646 (8) | 0.0168 (3) | |
C6 | 0.19174 (9) | 0.07961 (12) | 0.46867 (8) | 0.0165 (3) | |
C7 | 0.15172 (9) | −0.02860 (12) | 0.48099 (8) | 0.0176 (3) | |
H7 | 0.1608 | −0.0915 | 0.4448 | 0.021* | |
C8 | 0.09834 (9) | −0.04198 (12) | 0.54744 (8) | 0.0171 (3) | |
C9 | 0.08764 (9) | 0.05263 (12) | 0.59918 (8) | 0.0181 (3) | |
H9 | 0.0506 | 0.0462 | 0.6447 | 0.022* | |
C10 | 0.13161 (9) | 0.15523 (12) | 0.58311 (8) | 0.0169 (3) | |
C11 | 0.12409 (9) | 0.25867 (12) | 0.63712 (8) | 0.0183 (3) | |
C12 | 0.16340 (10) | 0.36471 (12) | 0.61690 (9) | 0.0210 (3) | |
H12 | 0.1964 | 0.3725 | 0.5690 | 0.025* | |
C13 | 0.15333 (10) | 0.45889 (13) | 0.66836 (9) | 0.0249 (4) | |
H13 | 0.1788 | 0.5327 | 0.6559 | 0.030* | |
C14 | 0.10571 (10) | 0.44385 (13) | 0.73784 (9) | 0.0251 (4) | |
H14 | 0.0972 | 0.5071 | 0.7738 | 0.030* | |
C15 | 0.07083 (10) | 0.33492 (13) | 0.75376 (9) | 0.0248 (4) | |
H15 | 0.0398 | 0.3245 | 0.8025 | 0.030* | |
C16 | 0.06992 (9) | −0.24153 (11) | 0.51510 (9) | 0.0194 (3) | |
H16A | 0.1330 | −0.2642 | 0.5175 | 0.023* | |
H16B | 0.0554 | −0.2212 | 0.4592 | 0.023* | |
C17 | 0.01309 (10) | −0.34175 (11) | 0.54245 (9) | 0.0197 (3) | |
H17A | −0.0499 | −0.3192 | 0.5396 | 0.024* | |
H17B | 0.0272 | −0.3612 | 0.5986 | 0.024* | |
C18 | 0.02948 (9) | −0.44830 (11) | 0.48956 (9) | 0.0194 (3) | |
H18A | 0.0192 | −0.4263 | 0.4332 | 0.023* | |
H18B | 0.0920 | −0.4722 | 0.4948 | 0.023* | |
N1 | 0.28336 (8) | 0.00494 (10) | 0.36295 (7) | 0.0196 (3) | |
N2 | 0.18298 (8) | 0.17077 (9) | 0.51806 (7) | 0.0176 (3) | |
N3 | 0.07781 (8) | 0.24306 (10) | 0.70493 (7) | 0.0205 (3) | |
O | 0.05447 (6) | −0.14203 (8) | 0.56613 (6) | 0.0204 (2) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0226 (8) | 0.0216 (8) | 0.0178 (7) | −0.0008 (6) | 0.0034 (6) | −0.0049 (6) |
C2 | 0.0274 (9) | 0.0297 (9) | 0.0183 (8) | −0.0054 (6) | 0.0059 (6) | −0.0001 (7) |
C3 | 0.0310 (8) | 0.0187 (7) | 0.0230 (8) | −0.0061 (6) | 0.0010 (7) | 0.0019 (6) |
C4 | 0.0230 (8) | 0.0180 (7) | 0.0198 (7) | −0.0019 (6) | −0.0002 (6) | −0.0025 (6) |
C5 | 0.0176 (7) | 0.0190 (7) | 0.0137 (7) | −0.0016 (6) | −0.0026 (6) | −0.0010 (6) |
C6 | 0.0175 (7) | 0.0164 (7) | 0.0155 (7) | 0.0008 (5) | −0.0018 (6) | 0.0011 (6) |
C7 | 0.0202 (8) | 0.0157 (7) | 0.0168 (7) | 0.0005 (5) | −0.0006 (6) | −0.0014 (6) |
C8 | 0.0175 (7) | 0.0149 (7) | 0.0189 (7) | −0.0013 (5) | −0.0029 (6) | 0.0024 (6) |
C9 | 0.0203 (8) | 0.0199 (7) | 0.0141 (7) | 0.0011 (6) | −0.0001 (6) | 0.0000 (6) |
C10 | 0.0173 (7) | 0.0184 (7) | 0.0150 (7) | 0.0019 (5) | −0.0017 (6) | 0.0000 (6) |
C11 | 0.0185 (7) | 0.0194 (7) | 0.0172 (7) | 0.0015 (6) | −0.0016 (6) | −0.0023 (6) |
C12 | 0.0228 (8) | 0.0210 (8) | 0.0191 (8) | −0.0016 (6) | 0.0006 (6) | −0.0015 (6) |
C13 | 0.0268 (8) | 0.0179 (8) | 0.0299 (8) | −0.0012 (6) | −0.0026 (7) | −0.0035 (6) |
C14 | 0.0265 (8) | 0.0243 (8) | 0.0246 (8) | 0.0020 (6) | −0.0016 (7) | −0.0090 (7) |
C15 | 0.0251 (8) | 0.0284 (8) | 0.0209 (8) | 0.0028 (7) | 0.0015 (7) | −0.0047 (7) |
C16 | 0.0237 (7) | 0.0146 (7) | 0.0198 (7) | −0.0008 (6) | 0.0020 (6) | −0.0018 (6) |
C17 | 0.0228 (8) | 0.0164 (7) | 0.0199 (8) | −0.0006 (6) | 0.0014 (6) | −0.0002 (6) |
C18 | 0.0212 (8) | 0.0163 (7) | 0.0208 (7) | −0.0008 (6) | 0.0023 (6) | −0.0004 (6) |
N1 | 0.0215 (6) | 0.0190 (6) | 0.0184 (6) | 0.0003 (5) | 0.0008 (5) | −0.0016 (5) |
N2 | 0.0205 (6) | 0.0165 (6) | 0.0159 (6) | 0.0007 (5) | −0.0010 (5) | −0.0004 (5) |
N3 | 0.0226 (6) | 0.0214 (6) | 0.0175 (6) | 0.0001 (5) | 0.0023 (5) | −0.0025 (5) |
O | 0.0262 (6) | 0.0146 (5) | 0.0203 (5) | −0.0041 (4) | 0.0044 (4) | −0.0012 (4) |
C1—N1 | 1.3374 (18) | C10—N2 | 1.3508 (18) |
C1—C2 | 1.392 (2) | C10—C11 | 1.4934 (19) |
C2—C3 | 1.377 (2) | C11—N3 | 1.3467 (18) |
C3—C4 | 1.389 (2) | C11—C12 | 1.391 (2) |
C4—C5 | 1.380 (2) | C12—C13 | 1.388 (2) |
C5—N1 | 1.3527 (18) | C13—C14 | 1.380 (2) |
C5—C6 | 1.4833 (19) | C14—C15 | 1.378 (2) |
C6—N2 | 1.3374 (18) | C15—N3 | 1.3354 (18) |
C6—C7 | 1.3917 (19) | C16—O | 1.4422 (17) |
C7—C8 | 1.3845 (19) | C16—C17 | 1.5031 (19) |
C8—O | 1.3581 (17) | C17—C18 | 1.527 (2) |
C8—C9 | 1.395 (2) | C18—C18i | 1.521 (3) |
C9—C10 | 1.374 (2) | ||
N1—C1—C2 | 122.88 (13) | N2—C10—C11 | 115.45 (12) |
C3—C2—C1 | 118.96 (14) | C9—C10—C11 | 121.29 (12) |
C2—C3—C4 | 118.91 (13) | N3—C11—C12 | 122.87 (13) |
C5—C4—C3 | 118.73 (13) | N3—C11—C10 | 116.54 (12) |
N1—C5—C4 | 122.98 (13) | C12—C11—C10 | 120.59 (13) |
N1—C5—C6 | 116.09 (12) | C13—C12—C11 | 118.48 (14) |
C4—C5—C6 | 120.91 (12) | C14—C13—C12 | 119.06 (14) |
N2—C6—C7 | 123.83 (13) | C15—C14—C13 | 118.38 (14) |
N2—C6—C5 | 115.77 (12) | N3—C15—C14 | 124.12 (14) |
C7—C6—C5 | 120.39 (12) | O—C16—C17 | 109.06 (11) |
C8—C7—C6 | 118.09 (13) | C16—C17—C18 | 109.71 (12) |
O—C8—C7 | 124.28 (12) | C18i—C18—C17 | 112.98 (15) |
O—C8—C9 | 116.87 (12) | C1—N1—C5 | 117.52 (12) |
C7—C8—C9 | 118.86 (13) | C6—N2—C10 | 117.06 (11) |
C10—C9—C8 | 118.87 (13) | C15—N3—C11 | 117.05 (12) |
N2—C10—C9 | 123.26 (13) | C8—O—C16 | 116.58 (11) |
N1—C1—C2—C3 | 0.8 (2) | N3—C11—C12—C13 | −1.0 (2) |
C1—C2—C3—C4 | 0.4 (2) | C10—C11—C12—C13 | 178.92 (12) |
C2—C3—C4—C5 | −0.9 (2) | C11—C12—C13—C14 | 0.7 (2) |
C3—C4—C5—N1 | 0.3 (2) | C12—C13—C14—C15 | 0.7 (2) |
C3—C4—C5—C6 | −178.31 (13) | C13—C14—C15—N3 | −2.1 (2) |
N1—C5—C6—N2 | 155.72 (12) | O—C16—C17—C18 | −179.36 (11) |
C4—C5—C6—N2 | −25.62 (19) | C16—C17—C18—C18i | −176.75 (15) |
N1—C5—C6—C7 | −25.77 (19) | C2—C1—N1—C5 | −1.4 (2) |
C4—C5—C6—C7 | 152.89 (13) | C4—C5—N1—C1 | 0.9 (2) |
N2—C6—C7—C8 | 1.3 (2) | C6—C5—N1—C1 | 179.51 (12) |
C5—C6—C7—C8 | −177.08 (12) | C7—C6—N2—C10 | −0.4 (2) |
C6—C7—C8—O | 179.13 (13) | C5—C6—N2—C10 | 178.08 (12) |
C6—C7—C8—C9 | −0.5 (2) | C9—C10—N2—C6 | −1.4 (2) |
O—C8—C9—C10 | 179.26 (12) | C11—C10—N2—C6 | 179.51 (12) |
C7—C8—C9—C10 | −1.1 (2) | C14—C15—N3—C11 | 1.8 (2) |
C8—C9—C10—N2 | 2.1 (2) | C12—C11—N3—C15 | −0.2 (2) |
C8—C9—C10—C11 | −178.83 (12) | C10—C11—N3—C15 | 179.86 (12) |
N2—C10—C11—N3 | −175.94 (12) | C7—C8—O—C16 | 3.91 (19) |
C9—C10—C11—N3 | 4.92 (19) | C9—C8—O—C16 | −176.42 (12) |
N2—C10—C11—C12 | 4.17 (19) | C17—C16—O—C8 | −177.42 (11) |
C9—C10—C11—C12 | −174.98 (14) |
Symmetry code: (i) −x, −y−1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
C15—H15···Oii | 0.95 | 2.65 | 3.575 (2) | 164 |
C1—H1···N3iii | 0.95 | 2.71 | 3.654 (2) | 174 |
C4—H4···N1iv | 0.95 | 2.65 | 3.402 (2) | 136 |
C2—H2···Oiii | 0.95 | 2.69 | 3.627 (2) | 168 |
Symmetry codes: (ii) −x, y+1/2, −z+3/2; (iii) −x+1/2, −y, z−1/2; (iv) −x+1/2, y+1/2, z. |
Experimental details
Crystal data | |
Chemical formula | C36H32N6O2 |
Mr | 580.7 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 100 |
a, b, c (Å) | 15.139 (5), 11.428 (5), 16.760 (5) |
V (Å3) | 2899.6 (18) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.40 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur 2 CCD |
Absorption correction | Multi-scan (Blessing, 1995) |
Tmin, Tmax | 0.967, 0.983 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 20354, 2859, 2098 |
Rint | 0.064 |
(sin θ/λ)max (Å−1) | 0.618 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.038, 0.100, 0.94 |
No. of reflections | 2859 |
No. of parameters | 199 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.17, −0.26 |
Computer programs: CrysAlis CCD (Oxford Diffraction, 2008), CrysAlis RED (Oxford Diffraction, 2008), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1999), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
C15—H15···Oi | 0.950 | 2.652 | 3.575 (2) | 164 |
C1—H1···N3ii | 0.950 | 2.708 | 3.654 (2) | 174 |
C4—H4···N1iii | 0.949 | 2.652 | 3.402 (2) | 136 |
C2—H2···Oii | 0.950 | 2.694 | 3.627 (2) | 168 |
Symmetry codes: (i) −x, y+1/2, −z+3/2; (ii) −x+1/2, −y, z−1/2; (iii) −x+1/2, y+1/2, z. |
Acknowledgements
We wish to thank the Univeristy of Kwazulu-Natal for supporting this research by providing both funding and facilities.
References
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The title compound is the second in a series of ligands developed in an effort to harness multifunctional activity. Coordination of these ligands to platinum(II) should enable covalent binding of DNA through both metal centres, thus increasing the number of adducts formed. Furthermore the presence of the flexible diol derived linkage will provide the complex with the potential to engage in long range interactions with DNA.
The ligand crystallized in the orthorhombic space group Pbca, with a half molecule in the asymmetric unit and Z = 4. Crystallographically imposed inversion symmetry relates two halves of the ligand. The inversion center is located at the mid-point of the diol linkage. The three pyridine rings adopt a trans, trans conformation. The same configuration is observed in the parent 4'-chloro-2,2': 6',2''- terpyridine (Beves et al., 2006) and is a common feature of uncoordinated terpyridine ligands in general (Akerman et al., 2011; Bessel et al., 1992).
The central pyridine ring of the terpyridine fragment lie in the same plane as the bridging chain. The terminal pyridine rings are, however, canted relative to the central ring. The C7–C6–C5–N1 torsion angle is -25.8 (2)°, while the C9–C10–C11–N3 torsion angle is 4.9 (2)° (Fig. 1). The large torsion angle formed by one of terminal pyridine groups with the central ring is seemingly to allow for interaction between the pyridine N1 atom and the hydrogen atom H4 of an adjacent molecule, with the distance of 2.65 Å. There are also other short contacts C—H···O and C—H···N, ranging from 2.65 to 2.71 Å. These contacts link the molecules into a herringbone pattern (Figure 2). There is no indication of meaningful π··· π or C–H··· π interactions in the lattice, which are often observed in terpyridine structures (Beves et al. 2006).