organic compounds
1-(3-Fluorophenyl)-3-(4-nitrophenyl)urea
aSchool of Chinese Materia Medica, Tianjin University of Traditional Chinese Medicine, Tianjin, 300193, People's Republic of China, and bTianjin Key Laboratory of Molecular Design and Drug Discovery, Tianjin Institute of Pharmaceutical Research, Tianjin, 300193, People's Republic of China
*Correspondence e-mail: liyl@tjipr.com
In the title compound, C13H10FN3O3, the dihedral angle between the fluorophenyl and nitrophenyl ring planes is 6.51 (9)°. The features N—H⋯O hydrogen bonds.
Related literature
The title compound is an activated fragment of sorafenib derivatives. Sorafenib is a VEGFR-2 inhibitor (Ferrara et al., 2003; Peruzzi et al., 2006) that has good therapeutic effect for renal carcinoma and liver cancer (Wan et al., 2004; Wilhelm et al., 2004).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: CrystalClear (Rigaku, 2005); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL/PC (Sheldrick, 2008); software used to prepare material for publication: SHELXTL/PC.
Supporting information
https://doi.org/10.1107/S160053681202507X/zj2072sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S160053681202507X/zj2072Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S160053681202507X/zj2072Isup3.cml
A solution of 4-nitroaniline (1.38 g, 10 mmol) in DCM (100 ml) was added dropwise to a stirred solution of bis(trichloromethyl) carbonate (5.92 g, 20 mmol) in DCM (20 ml) at the atmosphere of ice-bath.The reaction mixture was stirred for 2 hrs at 0–5°C. Then the reaction mixture was added drpwise to a refluxed and stirred solution of 3-fluoroaniline (1.11 g, 10 mmol) in DCM (40 ml).The reaction was completed within 2 hrs at the reflux temperature.The solvent was removed under reduced pressure.Acetone (100 ml) and H2O (300 ml) was added to the mixture. The solid was collected and washed with H2O,then gave a yellow solid. The yield was 2.08 g (75.6%). Put about 0.3 g of the product in the ampoule bottle and add 10 ml absolute ethyl alcohol, yellow single crystals suitable for X-ray
were obtained by slow evaporation of the solvent at room temperature after 3 weeks.All H atoms were detected in a difference map, nevertheless, the H-atoms attached to the nitrogen atoms were refined freely, and the H-atoms attached to the carbon atoms were placed in calculated positions and refined using a riding motion approximation, with C—H=0.95 Å, with Uiso(H)=1.2Ueq(C).
Sorafenib is a VEGFR-2 inhibitor (Ferrara et al., 2003; Peruzzi et al., 2006) that has good therapeutic effect for renal carcinoma and liver cancer (Wan et al., 2004; Wilhelm et al., 2004). 1-(3-fluorophenyl)-3-(4-nitrophenyl) urea is an important activated fragment of sorafenib derivatives. We present here the structure characterization of the title compound.
In the molecule of the title compound (Fig.1) bond lengths and angles have normal values. The interplanar angle between the fluorobenzyl and nitrobenzyl ring planes is 6.51 (9)°. The
is stabilized by the intermolecular N—H···O hydrogen bonds. The (Fig.2) is stabilized by intermolecular N—H···O hydrogen bonds (table 1).The title compound is an activated fragment of sorafenib derivatives. Sorafenib is a VEGFR-2 inhibitor (Ferrara et al., 2003; Peruzzi et al., 2006) that has good therapeutic effect for renal carcinoma and liver cancer (Wan et al., 2004; Wilhelm et al., 2004).
Data collection: CrystalClear (Rigaku, 2005); cell
CrystalClear (Rigaku, 2005); data reduction: CrystalClear (Rigaku, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL/PC (Sheldrick, 2008); software used to prepare material for publication: SHELXTL/PC (Sheldrick, 2008).C13H10FN3O3 | F(000) = 568 |
Mr = 275.24 | Dx = 1.499 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 4180 reflections |
a = 8.351 (4) Å | θ = 1.6–27.8° |
b = 12.461 (6) Å | µ = 0.12 mm−1 |
c = 11.912 (6) Å | T = 113 K |
β = 100.315 (9)° | Prism, yellow |
V = 1219.5 (11) Å3 | 0.24 × 0.22 × 0.20 mm |
Z = 4 |
Rigaku Saturn CCD area-detector diffractometer | 2900 independent reflections |
Radiation source: rotating anode | 2459 reflections with I > 2σ(I) |
Multilayer monochromator | Rint = 0.045 |
Detector resolution: 14.63 pixels mm-1 | θmax = 27.8°, θmin = 2.4° |
ω and φ scans | h = −10→10 |
Absorption correction: multi-scan CrystalClear | k = −16→16 |
Tmin = 0.972, Tmax = 0.977 | l = −15→15 |
12466 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.052 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.131 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | w = 1/[σ2(Fo2) + (0.063P)2 + 0.1263P] where P = (Fo2 + 2Fc2)/3 |
2900 reflections | (Δ/σ)max = 0.003 |
189 parameters | Δρmax = 0.30 e Å−3 |
2 restraints | Δρmin = −0.26 e Å−3 |
C13H10FN3O3 | V = 1219.5 (11) Å3 |
Mr = 275.24 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 8.351 (4) Å | µ = 0.12 mm−1 |
b = 12.461 (6) Å | T = 113 K |
c = 11.912 (6) Å | 0.24 × 0.22 × 0.20 mm |
β = 100.315 (9)° |
Rigaku Saturn CCD area-detector diffractometer | 2900 independent reflections |
Absorption correction: multi-scan CrystalClear | 2459 reflections with I > 2σ(I) |
Tmin = 0.972, Tmax = 0.977 | Rint = 0.045 |
12466 measured reflections |
R[F2 > 2σ(F2)] = 0.052 | 2 restraints |
wR(F2) = 0.131 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | Δρmax = 0.30 e Å−3 |
2900 reflections | Δρmin = −0.26 e Å−3 |
189 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
F1 | 0.29184 (14) | 0.96861 (8) | −0.02312 (9) | 0.0449 (3) | |
O1 | −0.04969 (14) | 0.17411 (10) | 0.34582 (10) | 0.0322 (3) | |
O2 | 0.01132 (14) | 0.04318 (10) | 0.24132 (10) | 0.0340 (3) | |
O3 | 0.19105 (13) | 0.60131 (9) | 0.05581 (9) | 0.0277 (3) | |
N1 | 0.01105 (16) | 0.13960 (12) | 0.26533 (12) | 0.0265 (3) | |
N2 | 0.26220 (16) | 0.43681 (11) | −0.00884 (11) | 0.0255 (3) | |
N3 | 0.32644 (17) | 0.58967 (11) | −0.09569 (11) | 0.0258 (3) | |
C1 | 0.20093 (18) | 0.36633 (13) | 0.06336 (13) | 0.0236 (3) | |
C2 | 0.19815 (19) | 0.25683 (13) | 0.03495 (13) | 0.0252 (4) | |
H2 | 0.2380 | 0.2346 | −0.0312 | 0.030* | |
C3 | 0.13910 (19) | 0.18127 (13) | 0.10071 (14) | 0.0264 (4) | |
H3 | 0.1371 | 0.1074 | 0.0808 | 0.032* | |
C4 | 0.08209 (18) | 0.21605 (13) | 0.19783 (13) | 0.0232 (3) | |
C5 | 0.08776 (19) | 0.32275 (13) | 0.22924 (14) | 0.0258 (4) | |
H5 | 0.0505 | 0.3439 | 0.2967 | 0.031* | |
C6 | 0.14717 (19) | 0.39910 (13) | 0.16335 (13) | 0.0258 (4) | |
H6 | 0.1517 | 0.4725 | 0.1852 | 0.031* | |
C7 | 0.25437 (18) | 0.54780 (13) | −0.01016 (13) | 0.0234 (3) | |
C8 | 0.35025 (18) | 0.69898 (13) | −0.11978 (13) | 0.0246 (4) | |
C9 | 0.42473 (19) | 0.72135 (14) | −0.21284 (14) | 0.0268 (4) | |
H9 | 0.4554 | 0.6642 | −0.2573 | 0.032* | |
C10 | 0.4543 (2) | 0.82664 (14) | −0.24089 (14) | 0.0297 (4) | |
H10 | 0.5056 | 0.8406 | −0.3044 | 0.036* | |
C11 | 0.4106 (2) | 0.91169 (15) | −0.17805 (15) | 0.0327 (4) | |
H11 | 0.4305 | 0.9840 | −0.1969 | 0.039* | |
C12 | 0.3367 (2) | 0.88660 (13) | −0.08702 (15) | 0.0307 (4) | |
C13 | 0.30351 (19) | 0.78355 (14) | −0.05540 (14) | 0.0274 (4) | |
H13 | 0.2509 | 0.7705 | 0.0077 | 0.033* | |
H2A | 0.314 (2) | 0.4069 (14) | −0.0618 (13) | 0.037 (5)* | |
H3A | 0.372 (2) | 0.5429 (15) | −0.1377 (15) | 0.056 (7)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F1 | 0.0653 (8) | 0.0268 (6) | 0.0451 (7) | −0.0026 (5) | 0.0172 (6) | −0.0077 (5) |
O1 | 0.0318 (6) | 0.0391 (7) | 0.0288 (7) | −0.0028 (5) | 0.0136 (5) | 0.0027 (5) |
O2 | 0.0370 (7) | 0.0269 (6) | 0.0393 (7) | −0.0018 (5) | 0.0096 (5) | 0.0044 (5) |
O3 | 0.0300 (6) | 0.0275 (6) | 0.0278 (6) | 0.0027 (5) | 0.0116 (5) | −0.0012 (5) |
N1 | 0.0231 (7) | 0.0283 (7) | 0.0281 (7) | −0.0001 (6) | 0.0044 (5) | 0.0032 (6) |
N2 | 0.0292 (7) | 0.0241 (7) | 0.0265 (7) | 0.0010 (6) | 0.0141 (6) | 0.0009 (6) |
N3 | 0.0303 (7) | 0.0235 (7) | 0.0265 (7) | 0.0016 (6) | 0.0130 (6) | 0.0012 (6) |
C1 | 0.0206 (7) | 0.0276 (8) | 0.0236 (8) | 0.0013 (6) | 0.0060 (6) | 0.0015 (6) |
C2 | 0.0259 (8) | 0.0284 (8) | 0.0228 (8) | 0.0016 (6) | 0.0084 (6) | −0.0001 (6) |
C3 | 0.0257 (8) | 0.0250 (8) | 0.0287 (9) | 0.0008 (6) | 0.0056 (7) | −0.0005 (6) |
C4 | 0.0213 (7) | 0.0262 (8) | 0.0228 (8) | −0.0009 (6) | 0.0057 (6) | 0.0044 (6) |
C5 | 0.0259 (8) | 0.0285 (9) | 0.0250 (8) | 0.0023 (6) | 0.0097 (6) | −0.0002 (6) |
C6 | 0.0281 (8) | 0.0245 (8) | 0.0267 (8) | 0.0002 (6) | 0.0099 (7) | −0.0007 (6) |
C7 | 0.0205 (7) | 0.0257 (8) | 0.0239 (8) | 0.0009 (6) | 0.0042 (6) | 0.0006 (6) |
C8 | 0.0208 (7) | 0.0254 (8) | 0.0266 (8) | 0.0015 (6) | 0.0018 (6) | 0.0022 (6) |
C9 | 0.0250 (8) | 0.0292 (9) | 0.0263 (8) | 0.0008 (6) | 0.0051 (6) | 0.0037 (7) |
C10 | 0.0278 (8) | 0.0320 (9) | 0.0287 (9) | −0.0021 (7) | 0.0032 (7) | 0.0051 (7) |
C11 | 0.0352 (9) | 0.0275 (9) | 0.0342 (9) | −0.0054 (7) | 0.0027 (7) | 0.0030 (7) |
C12 | 0.0344 (9) | 0.0250 (8) | 0.0315 (9) | −0.0005 (7) | 0.0029 (7) | −0.0035 (7) |
C13 | 0.0286 (8) | 0.0279 (8) | 0.0257 (8) | −0.0018 (7) | 0.0048 (7) | 0.0011 (7) |
F1—C12 | 1.366 (2) | C3—H3 | 0.9500 |
O1—N1 | 1.2392 (18) | C4—C5 | 1.380 (2) |
O2—N1 | 1.235 (2) | C5—C6 | 1.381 (2) |
O3—C7 | 1.2209 (19) | C5—H5 | 0.9500 |
N1—C4 | 1.441 (2) | C6—H6 | 0.9500 |
N2—C7 | 1.384 (2) | C8—C9 | 1.393 (2) |
N2—C1 | 1.389 (2) | C8—C13 | 1.399 (2) |
N2—H2A | 0.907 (9) | C9—C10 | 1.387 (2) |
N3—C7 | 1.376 (2) | C9—H9 | 0.9500 |
N3—C8 | 1.413 (2) | C10—C11 | 1.384 (2) |
N3—H3A | 0.897 (9) | C10—H10 | 0.9500 |
C1—C2 | 1.405 (2) | C11—C12 | 1.376 (3) |
C1—C6 | 1.407 (2) | C11—H11 | 0.9500 |
C2—C3 | 1.372 (2) | C12—C13 | 1.380 (2) |
C2—H2 | 0.9500 | C13—H13 | 0.9500 |
C3—C4 | 1.397 (2) | ||
O2—N1—O1 | 122.33 (14) | C5—C6—C1 | 118.87 (16) |
O2—N1—C4 | 119.72 (14) | C5—C6—H6 | 120.6 |
O1—N1—C4 | 117.95 (14) | C1—C6—H6 | 120.6 |
C7—N2—C1 | 128.07 (14) | O3—C7—N3 | 124.54 (16) |
C7—N2—H2A | 115.5 (12) | O3—C7—N2 | 124.28 (15) |
C1—N2—H2A | 116.4 (12) | N3—C7—N2 | 111.18 (14) |
C7—N3—C8 | 127.73 (14) | C9—C8—C13 | 119.58 (15) |
C7—N3—H3A | 116.9 (14) | C9—C8—N3 | 116.97 (15) |
C8—N3—H3A | 115.1 (14) | C13—C8—N3 | 123.46 (15) |
N2—C1—C2 | 117.18 (14) | C10—C9—C8 | 120.35 (16) |
N2—C1—C6 | 123.33 (15) | C10—C9—H9 | 119.8 |
C2—C1—C6 | 119.47 (15) | C8—C9—H9 | 119.8 |
C3—C2—C1 | 121.41 (15) | C11—C10—C9 | 121.22 (16) |
C3—C2—H2 | 119.3 | C11—C10—H10 | 119.4 |
C1—C2—H2 | 119.3 | C9—C10—H10 | 119.4 |
C2—C3—C4 | 118.09 (15) | C12—C11—C10 | 116.83 (16) |
C2—C3—H3 | 121.0 | C12—C11—H11 | 121.6 |
C4—C3—H3 | 121.0 | C10—C11—H11 | 121.6 |
C5—C4—C3 | 121.57 (15) | F1—C12—C11 | 118.40 (15) |
C5—C4—N1 | 118.89 (14) | F1—C12—C13 | 117.07 (15) |
C3—C4—N1 | 119.51 (15) | C11—C12—C13 | 124.52 (16) |
C4—C5—C6 | 120.54 (15) | C12—C13—C8 | 117.49 (16) |
C4—C5—H5 | 119.7 | C12—C13—H13 | 121.3 |
C6—C5—H5 | 119.7 | C8—C13—H13 | 121.3 |
C7—N2—C1—C2 | 168.79 (15) | C8—N3—C7—O3 | 4.1 (3) |
C7—N2—C1—C6 | −13.1 (2) | C8—N3—C7—N2 | −176.20 (14) |
N2—C1—C2—C3 | −179.65 (14) | C1—N2—C7—O3 | 0.8 (3) |
C6—C1—C2—C3 | 2.2 (2) | C1—N2—C7—N3 | −178.89 (14) |
C1—C2—C3—C4 | −0.3 (2) | C7—N3—C8—C9 | −179.05 (15) |
C2—C3—C4—C5 | −1.5 (2) | C7—N3—C8—C13 | 1.1 (3) |
C2—C3—C4—N1 | 176.62 (13) | C13—C8—C9—C10 | 0.8 (2) |
O2—N1—C4—C5 | −176.89 (14) | N3—C8—C9—C10 | −179.09 (14) |
O1—N1—C4—C5 | 3.6 (2) | C8—C9—C10—C11 | −0.2 (2) |
O2—N1—C4—C3 | 4.9 (2) | C9—C10—C11—C12 | 0.0 (2) |
O1—N1—C4—C3 | −174.56 (13) | C10—C11—C12—F1 | −179.98 (14) |
C3—C4—C5—C6 | 1.5 (2) | C10—C11—C12—C13 | −0.3 (3) |
N1—C4—C5—C6 | −176.63 (14) | F1—C12—C13—C8 | −179.49 (14) |
C4—C5—C6—C1 | 0.4 (2) | C11—C12—C13—C8 | 0.8 (3) |
N2—C1—C6—C5 | 179.79 (14) | C9—C8—C13—C12 | −1.0 (2) |
C2—C1—C6—C5 | −2.1 (2) | N3—C8—C13—C12 | 178.82 (15) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O1i | 0.91 (1) | 1.99 (1) | 2.890 (2) | 170 (2) |
N3—H3A···O2i | 0.90 (1) | 2.28 (1) | 3.157 (2) | 168 (2) |
Symmetry code: (i) x+1/2, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C13H10FN3O3 |
Mr | 275.24 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 113 |
a, b, c (Å) | 8.351 (4), 12.461 (6), 11.912 (6) |
β (°) | 100.315 (9) |
V (Å3) | 1219.5 (11) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.12 |
Crystal size (mm) | 0.24 × 0.22 × 0.20 |
Data collection | |
Diffractometer | Rigaku Saturn CCD area-detector |
Absorption correction | Multi-scan CrystalClear |
Tmin, Tmax | 0.972, 0.977 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12466, 2900, 2459 |
Rint | 0.045 |
(sin θ/λ)max (Å−1) | 0.657 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.052, 0.131, 1.12 |
No. of reflections | 2900 |
No. of parameters | 189 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.30, −0.26 |
Computer programs: CrystalClear (Rigaku, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL/PC (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O1i | 0.907 (9) | 1.993 (10) | 2.890 (2) | 169.5 (17) |
N3—H3A···O2i | 0.897 (9) | 2.275 (10) | 3.157 (2) | 168 (2) |
Symmetry code: (i) x+1/2, −y+1/2, z−1/2. |
Acknowledgements
This work was supported by the Tianjin Natural Science Foundation (09JCZDJC21700).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Sorafenib is a VEGFR-2 inhibitor (Ferrara et al., 2003; Peruzzi et al., 2006) that has good therapeutic effect for renal carcinoma and liver cancer (Wan et al., 2004; Wilhelm et al., 2004). 1-(3-fluorophenyl)-3-(4-nitrophenyl) urea is an important activated fragment of sorafenib derivatives. We present here the structure characterization of the title compound.
In the molecule of the title compound (Fig.1) bond lengths and angles have normal values. The interplanar angle between the fluorobenzyl and nitrobenzyl ring planes is 6.51 (9)°. The crystal structure is stabilized by the intermolecular N—H···O hydrogen bonds. The crystal structure (Fig.2) is stabilized by intermolecular N—H···O hydrogen bonds (table 1).