organic compounds
2-[3,5-Bis(4-methoxyphenyl)-4,5-dihydro-1H-pyrazol-1-yl]-4,6-bis(4-methoxyphenyl)pyrimidine
aX-ray Crystallography Laboratory, Post-Graduate Department of Physics and Electronics, University of Jammu, Jammu Tawi 180 006, India, and bDepartment of Studies in Chemistry, Mangalore University, Mangalagangotri 574 199, India
*Correspondence e-mail: rkvk.paper11@gmail.com
In the title compound, C35H32N4O4, the pyrazole ring forms a dihedral angle of 15.04 (8)° with the adjacent pyrimidine ring. The pyrimidine ring forms dihedral angles of 9.95 (8) and 1.86 (7)° with its adjacent methoxy-substituted benzene rings, whereas the equivalent angles are 80.24 (9) and 11.55 (9)° for the pyrazole ring and its adjacent benzene rings. The crystal packing features π–π interactions, the centroid–centroid distance between the pyrimidine and methoxyphenyl rings being 3.604 (1) Å. The pyrazole ring is nearly planar, with a maximum deviation of 0.020 (3) Å for the –CH2– carbon.
Related literature
For biological importance of substituted pyrimidines, see: Fun et al. (2010); Jasinski et al. (2010); Baktır et al. (2011); Samshuddin et al. (2011); Betz et al. (2012). For related literature on substituted pyrimidines and their derivatives, see: Calabresi et al. (1975); El-Hashash et al. (1993); Fun et al. (2012).
Experimental
Crystal data
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Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536812030516/bh2441sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812030516/bh2441Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536812030516/bh2441Isup3.cml
A mixture of 4,4'-dimethoxy chalcone (2.68 g, 0.01 mol) and amino guanidine hydrochloride (0.065 g, 0.005 mol) in 25 ml e thanol was refluxed for 24 hrs in the presence of sodium ethoxide (2 ml). The reaction mixture was cooled to room temperature and refrigerated overnight. The solid product obtained was filtered and recrystallized from ethanol, affording a yellow powder. Single crystals were grown from DMF by slow evaporation method and the yield of the compound was 64% (m.p. 502 K).
All H atoms were positioned geometrically and were treated as riding on their parent C atoms, with C—H distances of 0.93–0.98 Å and with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(methyl C).
The importance of pyrimidines and analogous compounds in pharmaceutical and biological fields is well known. Some substituted pyrimidines and their derivatives have been reported to possess antimicrobial and antifungal activities (El-Hashash et al., 1993). It has incidental antiviral activity against herpes and vaccinia infections (Calabresi et al., 1975). With the development of clinically useful pyrimidine based antitumor and antiviral drugs there has been noticeable interest in synthetic manipulations of pyrimidines. In view of the biological importance of pyrimidines and in continuation of work on synthesis of various derivatives of chalcone (Samshuddin et al., 2011; Fun et al., 2010; Jasinski et al., 2010; Baktır et al., 2011; Betz et al., 2012), the title compound is prepared and its
is reported.The molecule comprises of the pyrimidine ring, pyrazole ring, and four methoxy substituted benzene rings. All bond lengths and angles are normal and correspond to those observed in related structure (Fun et al., 2012). The six bond lengths in the pyrimidine ring lie in the range 1.337 (2)–1.396 (3) Å. The pyrimidine ring and pyrazole ring are individually planar with maximum deviations from the respective least-squares planes of: 0.010 (2) Å for C1 and 0.021 (3) Å for C26. Three intramolecular interactions C8—H8···N2, C20—H20···N6 and C41—H41···N24 are observed which lock the π–π interaction between the pyrimidine ring of the molecule at (x, y, z) and benzene ring (C7···C12) at (1 - x, -y, 1 - z) [centroid separation = 3.604 (1) Å, = 3.45 Å and centroid shift = 1.06 Å].
and thus eliminating conformational flexibility (Fig. 1). The pyrazole ring forms a dihedral angle of 15.04 (8)° with the adjacent pyrimidine ring (maximum deviation = -0.0176 (2) Å at atom C27). The pyrimidine ring forms dihedral angles of 9.95 (8) and 1.86 (7)° with its adjacent methoxy-substituted benzene rings (C15···C20 & C7···C12, respectively), whereas for pyrazole ring these angles are 80.24 (9) and 11.55 (9)° (C28···C33 & C36···C41, respectively). Molecules in the crystal are packed together to form layers, which appear to be extending diagonally along the ac plane (Fig. 2). Examination of non-bonded contacts reveals no classical intermolecular hydrogen bonds. The is stabilized byFor the synthesis of different derivatives of
see: Fun et al. (2010); Jasinski et al. (2010); Baktır et al. (2011); Samshuddin et al. (2011); Betz et al. (2012). For related literature, see: Calabresi et al. (1975); El-Hashash et al. (1993); Fun et al. (2012).Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell
CrysAlis PRO (Oxford Diffraction, 2010); data reduction: CrysAlis PRO (Oxford Diffraction, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: PLATON (Spek, 2009).C35H32N4O4 | F(000) = 1208 |
Mr = 572.65 | Dx = 1.266 Mg m−3 |
Monoclinic, P21/n | Melting point: 502 K |
Hall symbol: -P 2yn | Mo Kα radiation, λ = 0.71073 Å |
a = 21.637 (2) Å | Cell parameters from 4664 reflections |
b = 5.9532 (4) Å | θ = 3.1–32.2° |
c = 24.749 (2) Å | µ = 0.08 mm−1 |
β = 109.519 (10)° | T = 293 K |
V = 3004.7 (5) Å3 | Needle, white |
Z = 4 | 0.3 × 0.2 × 0.2 mm |
Agilent Xcalibur Sapphire3 diffractometer | 5824 independent reflections |
Radiation source: fine-focus sealed tube | 3423 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.028 |
Detector resolution: 16.1049 pixels mm-1 | θmax = 26.0°, θmin = 3.1° |
ω scan | h = −26→22 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) | k = −7→7 |
Tmin = 0.887, Tmax = 1.000 | l = −30→29 |
12486 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.052 | H-atom parameters constrained |
wR(F2) = 0.145 | w = 1/[σ2(Fo2) + (0.0751P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max = 0.001 |
5824 reflections | Δρmax = 0.16 e Å−3 |
393 parameters | Δρmin = −0.15 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
0 constraints | Extinction coefficient: 0.0036 (7) |
Primary atom site location: structure-invariant direct methods |
C35H32N4O4 | V = 3004.7 (5) Å3 |
Mr = 572.65 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 21.637 (2) Å | µ = 0.08 mm−1 |
b = 5.9532 (4) Å | T = 293 K |
c = 24.749 (2) Å | 0.3 × 0.2 × 0.2 mm |
β = 109.519 (10)° |
Agilent Xcalibur Sapphire3 diffractometer | 5824 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) | 3423 reflections with I > 2σ(I) |
Tmin = 0.887, Tmax = 1.000 | Rint = 0.028 |
12486 measured reflections |
R[F2 > 2σ(F2)] = 0.052 | 0 restraints |
wR(F2) = 0.145 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.16 e Å−3 |
5824 reflections | Δρmin = −0.15 e Å−3 |
393 parameters |
x | y | z | Uiso*/Ueq | ||
C1 | 0.94094 (10) | 0.2692 (3) | 0.65771 (9) | 0.0460 (5) | |
N2 | 0.97976 (8) | 0.4493 (3) | 0.66528 (7) | 0.0468 (4) | |
C3 | 0.97863 (9) | 0.5581 (3) | 0.61747 (8) | 0.0435 (5) | |
C4 | 0.93798 (10) | 0.4855 (3) | 0.56368 (9) | 0.0501 (5) | |
H4 | 0.9372 | 0.5613 | 0.5306 | 0.060* | |
C5 | 0.89887 (9) | 0.2986 (3) | 0.56049 (8) | 0.0443 (5) | |
N6 | 0.89964 (8) | 0.1872 (3) | 0.60806 (7) | 0.0475 (4) | |
C7 | 1.02191 (9) | 0.7565 (3) | 0.62675 (8) | 0.0440 (5) | |
C8 | 1.05920 (11) | 0.8194 (4) | 0.68218 (9) | 0.0607 (6) | |
H8 | 1.0567 | 0.7329 | 0.7127 | 0.073* | |
C9 | 1.09970 (12) | 1.0049 (4) | 0.69371 (9) | 0.0619 (6) | |
H9 | 1.1234 | 1.0428 | 0.7314 | 0.074* | |
C10 | 1.10489 (10) | 1.1338 (3) | 0.64922 (9) | 0.0486 (5) | |
C11 | 1.06833 (11) | 1.0755 (4) | 0.59376 (9) | 0.0590 (6) | |
H11 | 1.0710 | 1.1626 | 0.5634 | 0.071* | |
C12 | 1.02815 (10) | 0.8910 (3) | 0.58281 (9) | 0.0547 (6) | |
H12 | 1.0044 | 0.8546 | 0.5450 | 0.066* | |
O13 | 1.14306 (8) | 1.3213 (3) | 0.65618 (6) | 0.0673 (5) | |
C14 | 1.17755 (15) | 1.3895 (5) | 0.71345 (11) | 0.0891 (9) | |
H14A | 1.1475 | 1.4002 | 0.7344 | 0.134* | |
H14B | 1.1975 | 1.5333 | 0.7131 | 0.134* | |
H14C | 1.2109 | 1.2810 | 0.7315 | 0.134* | |
C15 | 0.85339 (10) | 0.2065 (3) | 0.50591 (8) | 0.0467 (5) | |
C16 | 0.83848 (11) | 0.3217 (4) | 0.45394 (9) | 0.0578 (6) | |
H16 | 0.8589 | 0.4583 | 0.4527 | 0.069* | |
C17 | 0.79427 (12) | 0.2366 (4) | 0.40474 (10) | 0.0656 (7) | |
H17 | 0.7852 | 0.3163 | 0.3707 | 0.079* | |
C18 | 0.76293 (11) | 0.0351 (4) | 0.40476 (9) | 0.0565 (6) | |
C19 | 0.77751 (12) | −0.0839 (4) | 0.45515 (10) | 0.0634 (6) | |
H19 | 0.7574 | −0.2215 | 0.4558 | 0.076* | |
C20 | 0.82231 (11) | 0.0022 (3) | 0.50497 (9) | 0.0589 (6) | |
H20 | 0.8318 | −0.0796 | 0.5388 | 0.071* | |
O21 | 0.71861 (9) | −0.0292 (3) | 0.35312 (7) | 0.0772 (5) | |
C22 | 0.68206 (15) | −0.2275 (5) | 0.35211 (12) | 0.0921 (9) | |
H22A | 0.7113 | −0.3538 | 0.3622 | 0.138* | |
H22B | 0.6511 | −0.2491 | 0.3143 | 0.138* | |
H22C | 0.6591 | −0.2140 | 0.3791 | 0.138* | |
N23 | 0.94146 (8) | 0.1510 (3) | 0.70559 (7) | 0.0532 (5) | |
C27 | 0.90703 (10) | −0.0654 (3) | 0.70347 (8) | 0.0497 (5) | |
H27 | 0.9161 | −0.1646 | 0.6754 | 0.060* | |
C26 | 0.94213 (11) | −0.1561 (4) | 0.76440 (9) | 0.0589 (6) | |
H26A | 0.9112 | −0.1843 | 0.7844 | 0.071* | |
H26B | 0.9658 | −0.2936 | 0.7633 | 0.071* | |
C25 | 0.98826 (10) | 0.0304 (3) | 0.79219 (9) | 0.0512 (5) | |
N24 | 0.98766 (9) | 0.1968 (3) | 0.75857 (7) | 0.0516 (4) | |
C28 | 0.83408 (10) | −0.0386 (3) | 0.68865 (8) | 0.0466 (5) | |
C29 | 0.79248 (11) | −0.1969 (4) | 0.65509 (10) | 0.0594 (6) | |
H29 | 0.8099 | −0.3149 | 0.6402 | 0.071* | |
C30 | 0.72521 (12) | −0.1855 (4) | 0.64285 (10) | 0.0668 (7) | |
H30 | 0.6980 | −0.2946 | 0.6200 | 0.080* | |
C31 | 0.69907 (11) | −0.0116 (4) | 0.66471 (9) | 0.0562 (6) | |
C32 | 0.73989 (12) | 0.1499 (4) | 0.69814 (9) | 0.0603 (6) | |
H32 | 0.7223 | 0.2685 | 0.7127 | 0.072* | |
C33 | 0.80649 (11) | 0.1356 (3) | 0.70990 (9) | 0.0550 (6) | |
H33 | 0.8336 | 0.2452 | 0.7326 | 0.066* | |
O34 | 0.63314 (8) | 0.0149 (3) | 0.65443 (8) | 0.0832 (6) | |
C35 | 0.59055 (14) | −0.1475 (6) | 0.61983 (16) | 0.1181 (12) | |
H35A | 0.5895 | −0.1317 | 0.5809 | 0.177* | |
H35B | 0.5472 | −0.1264 | 0.6215 | 0.177* | |
H35C | 0.6059 | −0.2950 | 0.6335 | 0.177* | |
C36 | 1.03203 (11) | 0.0316 (3) | 0.85193 (9) | 0.0538 (6) | |
C37 | 1.02482 (14) | −0.1251 (5) | 0.89076 (11) | 0.0897 (9) | |
H37 | 0.9925 | −0.2346 | 0.8786 | 0.108* | |
C38 | 1.06520 (16) | −0.1204 (5) | 0.94740 (11) | 0.1114 (13) | |
H38 | 1.0594 | −0.2262 | 0.9729 | 0.134* | |
C39 | 1.11359 (13) | 0.0376 (4) | 0.96645 (10) | 0.0758 (7) | |
C40 | 1.12168 (12) | 0.1934 (4) | 0.92856 (10) | 0.0691 (7) | |
H40 | 1.1545 | 0.3014 | 0.9409 | 0.083* | |
C41 | 1.08110 (12) | 0.1895 (4) | 0.87217 (10) | 0.0639 (6) | |
H41 | 1.0870 | 0.2966 | 0.8470 | 0.077* | |
O42 | 1.15190 (11) | 0.0266 (4) | 1.02335 (8) | 0.1112 (8) | |
C43 | 1.20421 (18) | 0.1810 (5) | 1.04362 (12) | 0.1177 (13) | |
H43A | 1.2342 | 0.1608 | 1.0229 | 0.177* | |
H43B | 1.2267 | 0.1557 | 1.0837 | 0.177* | |
H43C | 1.1873 | 0.3314 | 1.0380 | 0.177* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0467 (12) | 0.0489 (11) | 0.0462 (12) | 0.0054 (10) | 0.0206 (10) | 0.0098 (9) |
N2 | 0.0513 (10) | 0.0458 (9) | 0.0446 (10) | −0.0002 (8) | 0.0177 (8) | 0.0078 (8) |
C3 | 0.0433 (11) | 0.0430 (11) | 0.0447 (12) | 0.0081 (9) | 0.0155 (9) | 0.0088 (9) |
C4 | 0.0552 (13) | 0.0519 (12) | 0.0435 (12) | 0.0034 (10) | 0.0169 (10) | 0.0124 (9) |
C5 | 0.0438 (12) | 0.0453 (11) | 0.0441 (12) | 0.0104 (9) | 0.0149 (9) | 0.0071 (9) |
N6 | 0.0482 (10) | 0.0526 (9) | 0.0419 (10) | 0.0018 (8) | 0.0155 (8) | 0.0061 (8) |
C7 | 0.0402 (11) | 0.0468 (11) | 0.0455 (12) | 0.0065 (9) | 0.0150 (9) | 0.0073 (9) |
C8 | 0.0665 (15) | 0.0661 (14) | 0.0468 (13) | −0.0097 (12) | 0.0153 (11) | 0.0152 (11) |
C9 | 0.0662 (15) | 0.0674 (14) | 0.0475 (13) | −0.0134 (12) | 0.0127 (11) | 0.0052 (11) |
C10 | 0.0464 (12) | 0.0481 (12) | 0.0526 (13) | 0.0012 (9) | 0.0182 (10) | 0.0058 (10) |
C11 | 0.0711 (15) | 0.0593 (13) | 0.0480 (13) | −0.0093 (12) | 0.0218 (11) | 0.0112 (10) |
C12 | 0.0629 (14) | 0.0584 (13) | 0.0411 (12) | −0.0061 (11) | 0.0152 (10) | 0.0063 (10) |
O13 | 0.0763 (11) | 0.0639 (10) | 0.0612 (10) | −0.0188 (8) | 0.0222 (9) | 0.0029 (7) |
C14 | 0.104 (2) | 0.0834 (17) | 0.0679 (18) | −0.0364 (16) | 0.0122 (16) | −0.0077 (14) |
C15 | 0.0478 (12) | 0.0482 (11) | 0.0442 (12) | 0.0069 (10) | 0.0155 (10) | 0.0061 (9) |
C16 | 0.0634 (14) | 0.0560 (12) | 0.0500 (13) | −0.0029 (11) | 0.0134 (11) | 0.0090 (11) |
C17 | 0.0752 (16) | 0.0707 (15) | 0.0461 (14) | 0.0014 (13) | 0.0137 (12) | 0.0164 (11) |
C18 | 0.0568 (14) | 0.0633 (14) | 0.0434 (13) | 0.0049 (11) | 0.0089 (11) | 0.0014 (10) |
C19 | 0.0789 (17) | 0.0503 (12) | 0.0550 (14) | −0.0058 (12) | 0.0145 (12) | 0.0029 (11) |
C20 | 0.0714 (16) | 0.0534 (12) | 0.0470 (13) | 0.0014 (11) | 0.0134 (11) | 0.0087 (10) |
O21 | 0.0823 (12) | 0.0822 (11) | 0.0512 (10) | −0.0099 (10) | 0.0010 (9) | 0.0016 (8) |
C22 | 0.105 (2) | 0.0825 (19) | 0.0681 (18) | −0.0162 (17) | 0.0016 (16) | −0.0098 (14) |
N23 | 0.0575 (11) | 0.0594 (10) | 0.0409 (10) | −0.0143 (9) | 0.0140 (9) | 0.0064 (8) |
C27 | 0.0565 (13) | 0.0490 (12) | 0.0466 (12) | −0.0042 (10) | 0.0212 (10) | 0.0023 (9) |
C26 | 0.0574 (14) | 0.0606 (13) | 0.0562 (14) | −0.0063 (11) | 0.0155 (11) | 0.0113 (11) |
C25 | 0.0530 (13) | 0.0541 (12) | 0.0490 (13) | −0.0014 (10) | 0.0204 (10) | 0.0089 (10) |
N24 | 0.0581 (11) | 0.0560 (10) | 0.0401 (10) | −0.0057 (9) | 0.0158 (8) | 0.0038 (8) |
C28 | 0.0556 (13) | 0.0496 (11) | 0.0373 (11) | −0.0038 (10) | 0.0191 (10) | 0.0021 (9) |
C29 | 0.0582 (15) | 0.0548 (12) | 0.0684 (15) | −0.0033 (11) | 0.0252 (12) | −0.0180 (11) |
C30 | 0.0598 (15) | 0.0649 (14) | 0.0764 (17) | −0.0112 (12) | 0.0236 (13) | −0.0224 (12) |
C31 | 0.0538 (14) | 0.0636 (13) | 0.0544 (13) | 0.0031 (11) | 0.0223 (11) | −0.0043 (11) |
C32 | 0.0676 (16) | 0.0597 (13) | 0.0557 (14) | 0.0069 (12) | 0.0234 (12) | −0.0110 (11) |
C33 | 0.0622 (15) | 0.0533 (12) | 0.0472 (13) | −0.0055 (11) | 0.0153 (11) | −0.0088 (10) |
O34 | 0.0555 (11) | 0.0960 (13) | 0.0997 (14) | 0.0022 (9) | 0.0278 (10) | −0.0225 (10) |
C35 | 0.0585 (18) | 0.125 (3) | 0.166 (3) | −0.0159 (18) | 0.032 (2) | −0.044 (2) |
C36 | 0.0547 (13) | 0.0593 (13) | 0.0459 (13) | −0.0015 (11) | 0.0149 (10) | 0.0080 (10) |
C37 | 0.092 (2) | 0.0934 (19) | 0.0640 (17) | −0.0369 (16) | 0.0006 (15) | 0.0306 (14) |
C38 | 0.122 (3) | 0.125 (2) | 0.0598 (18) | −0.052 (2) | −0.0063 (18) | 0.0448 (17) |
C39 | 0.0825 (19) | 0.0872 (17) | 0.0469 (14) | −0.0161 (15) | 0.0075 (13) | 0.0133 (13) |
C40 | 0.0721 (16) | 0.0742 (15) | 0.0548 (15) | −0.0168 (13) | 0.0128 (12) | 0.0081 (12) |
C41 | 0.0732 (16) | 0.0665 (14) | 0.0499 (14) | −0.0136 (13) | 0.0177 (12) | 0.0128 (11) |
O42 | 0.1200 (17) | 0.1355 (17) | 0.0529 (11) | −0.0441 (14) | −0.0047 (11) | 0.0269 (11) |
C43 | 0.137 (3) | 0.123 (2) | 0.0618 (19) | −0.050 (2) | −0.0081 (19) | 0.0032 (17) |
C1—N2 | 1.337 (2) | N23—N24 | 1.385 (2) |
C1—N6 | 1.347 (2) | N23—C27 | 1.480 (2) |
C1—N23 | 1.375 (2) | C27—C28 | 1.505 (3) |
N2—C3 | 1.342 (2) | C27—C26 | 1.542 (3) |
C3—C4 | 1.396 (3) | C27—H27 | 0.9800 |
C3—C7 | 1.477 (3) | C26—C25 | 1.498 (3) |
C4—C5 | 1.384 (3) | C26—H26A | 0.9700 |
C4—H4 | 0.9300 | C26—H26B | 0.9700 |
C5—N6 | 1.346 (2) | C25—N24 | 1.291 (2) |
C5—C15 | 1.485 (3) | C25—C36 | 1.465 (3) |
C7—C8 | 1.390 (3) | C28—C29 | 1.374 (3) |
C7—C12 | 1.393 (3) | C28—C33 | 1.385 (3) |
C8—C9 | 1.379 (3) | C29—C30 | 1.386 (3) |
C8—H8 | 0.9300 | C29—H29 | 0.9300 |
C9—C10 | 1.377 (3) | C30—C31 | 1.374 (3) |
C9—H9 | 0.9300 | C30—H30 | 0.9300 |
C10—O13 | 1.364 (2) | C31—O34 | 1.372 (3) |
C10—C11 | 1.380 (3) | C31—C32 | 1.379 (3) |
C11—C12 | 1.371 (3) | C32—C33 | 1.374 (3) |
C11—H11 | 0.9300 | C32—H32 | 0.9300 |
C12—H12 | 0.9300 | C33—H33 | 0.9300 |
O13—C14 | 1.423 (3) | O34—C35 | 1.411 (3) |
C14—H14A | 0.9600 | C35—H35A | 0.9600 |
C14—H14B | 0.9600 | C35—H35B | 0.9600 |
C14—H14C | 0.9600 | C35—H35C | 0.9600 |
C15—C20 | 1.386 (3) | C36—C41 | 1.381 (3) |
C15—C16 | 1.397 (3) | C36—C37 | 1.385 (3) |
C16—C17 | 1.370 (3) | C37—C38 | 1.382 (3) |
C16—H16 | 0.9300 | C37—H37 | 0.9300 |
C17—C18 | 1.378 (3) | C38—C39 | 1.369 (4) |
C17—H17 | 0.9300 | C38—H38 | 0.9300 |
C18—O21 | 1.372 (2) | C39—C40 | 1.371 (3) |
C18—C19 | 1.376 (3) | C39—O42 | 1.376 (3) |
C19—C20 | 1.387 (3) | C40—C41 | 1.379 (3) |
C19—H19 | 0.9300 | C40—H40 | 0.9300 |
C20—H20 | 0.9300 | C41—H41 | 0.9300 |
O21—C22 | 1.416 (3) | O42—C43 | 1.414 (3) |
C22—H22A | 0.9600 | C43—H43A | 0.9600 |
C22—H22B | 0.9600 | C43—H43B | 0.9600 |
C22—H22C | 0.9600 | C43—H43C | 0.9600 |
N2—C1—N6 | 127.81 (18) | N23—C27—C28 | 113.01 (16) |
N2—C1—N23 | 117.79 (18) | N23—C27—C26 | 101.11 (15) |
N6—C1—N23 | 114.39 (17) | C28—C27—C26 | 114.17 (17) |
C1—N2—C3 | 115.99 (17) | N23—C27—H27 | 109.4 |
N2—C3—C4 | 120.76 (18) | C28—C27—H27 | 109.4 |
N2—C3—C7 | 115.14 (17) | C26—C27—H27 | 109.4 |
C4—C3—C7 | 124.09 (17) | C25—C26—C27 | 102.96 (16) |
C5—C4—C3 | 118.79 (18) | C25—C26—H26A | 111.2 |
C5—C4—H4 | 120.6 | C27—C26—H26A | 111.2 |
C3—C4—H4 | 120.6 | C25—C26—H26B | 111.2 |
N6—C5—C4 | 121.15 (18) | C27—C26—H26B | 111.2 |
N6—C5—C15 | 115.10 (18) | H26A—C26—H26B | 109.1 |
C4—C5—C15 | 123.74 (18) | N24—C25—C36 | 120.68 (19) |
C5—N6—C1 | 115.48 (17) | N24—C25—C26 | 114.29 (18) |
C8—C7—C12 | 116.12 (19) | C36—C25—C26 | 125.03 (18) |
C8—C7—C3 | 119.82 (18) | C25—N24—N23 | 107.92 (17) |
C12—C7—C3 | 124.06 (18) | C29—C28—C33 | 117.68 (19) |
C9—C8—C7 | 122.6 (2) | C29—C28—C27 | 119.77 (18) |
C9—C8—H8 | 118.7 | C33—C28—C27 | 122.47 (18) |
C7—C8—H8 | 118.7 | C28—C29—C30 | 121.8 (2) |
C10—C9—C8 | 119.8 (2) | C28—C29—H29 | 119.1 |
C10—C9—H9 | 120.1 | C30—C29—H29 | 119.1 |
C8—C9—H9 | 120.1 | C31—C30—C29 | 119.4 (2) |
O13—C10—C9 | 124.22 (19) | C31—C30—H30 | 120.3 |
O13—C10—C11 | 116.93 (18) | C29—C30—H30 | 120.3 |
C9—C10—C11 | 118.8 (2) | O34—C31—C30 | 123.6 (2) |
C12—C11—C10 | 120.9 (2) | O34—C31—C32 | 116.7 (2) |
C12—C11—H11 | 119.6 | C30—C31—C32 | 119.7 (2) |
C10—C11—H11 | 119.6 | C33—C32—C31 | 120.0 (2) |
C11—C12—C7 | 121.8 (2) | C33—C32—H32 | 120.0 |
C11—C12—H12 | 119.1 | C31—C32—H32 | 120.0 |
C7—C12—H12 | 119.1 | C32—C33—C28 | 121.36 (19) |
C10—O13—C14 | 116.95 (18) | C32—C33—H33 | 119.3 |
O13—C14—H14A | 109.5 | C28—C33—H33 | 119.3 |
O13—C14—H14B | 109.5 | C31—O34—C35 | 117.50 (19) |
H14A—C14—H14B | 109.5 | O34—C35—H35A | 109.5 |
O13—C14—H14C | 109.5 | O34—C35—H35B | 109.5 |
H14A—C14—H14C | 109.5 | H35A—C35—H35B | 109.5 |
H14B—C14—H14C | 109.5 | O34—C35—H35C | 109.5 |
C20—C15—C16 | 117.00 (19) | H35A—C35—H35C | 109.5 |
C20—C15—C5 | 120.63 (18) | H35B—C35—H35C | 109.5 |
C16—C15—C5 | 122.34 (18) | C41—C36—C37 | 117.3 (2) |
C17—C16—C15 | 121.0 (2) | C41—C36—C25 | 121.93 (19) |
C17—C16—H16 | 119.5 | C37—C36—C25 | 120.8 (2) |
C15—C16—H16 | 119.5 | C38—C37—C36 | 120.7 (2) |
C16—C17—C18 | 121.3 (2) | C38—C37—H37 | 119.6 |
C16—C17—H17 | 119.4 | C36—C37—H37 | 119.6 |
C18—C17—H17 | 119.4 | C39—C38—C37 | 121.0 (2) |
O21—C18—C19 | 125.3 (2) | C39—C38—H38 | 119.5 |
O21—C18—C17 | 115.70 (19) | C37—C38—H38 | 119.5 |
C19—C18—C17 | 119.0 (2) | C38—C39—C40 | 119.2 (2) |
C18—C19—C20 | 119.7 (2) | C38—C39—O42 | 116.7 (2) |
C18—C19—H19 | 120.1 | C40—C39—O42 | 124.1 (2) |
C20—C19—H19 | 120.1 | C39—C40—C41 | 119.8 (2) |
C15—C20—C19 | 122.0 (2) | C39—C40—H40 | 120.1 |
C15—C20—H20 | 119.0 | C41—C40—H40 | 120.1 |
C19—C20—H20 | 119.0 | C40—C41—C36 | 122.1 (2) |
C18—O21—C22 | 117.49 (18) | C40—C41—H41 | 119.0 |
O21—C22—H22A | 109.5 | C36—C41—H41 | 119.0 |
O21—C22—H22B | 109.5 | C39—O42—C43 | 118.0 (2) |
H22A—C22—H22B | 109.5 | O42—C43—H43A | 109.5 |
O21—C22—H22C | 109.5 | O42—C43—H43B | 109.5 |
H22A—C22—H22C | 109.5 | H43A—C43—H43B | 109.5 |
H22B—C22—H22C | 109.5 | O42—C43—H43C | 109.5 |
C1—N23—N24 | 120.71 (17) | H43A—C43—H43C | 109.5 |
C1—N23—C27 | 123.77 (16) | H43B—C43—H43C | 109.5 |
N24—N23—C27 | 113.61 (14) | ||
N6—C1—N2—C3 | −1.9 (3) | N2—C1—N23—C27 | −172.80 (17) |
N23—C1—N2—C3 | 179.00 (17) | N6—C1—N23—C27 | 8.0 (3) |
C1—N2—C3—C4 | 1.0 (3) | C1—N23—C27—C28 | −75.8 (2) |
C1—N2—C3—C7 | −179.94 (16) | N24—N23—C27—C28 | 119.86 (18) |
N2—C3—C4—C5 | −0.1 (3) | C1—N23—C27—C26 | 161.72 (19) |
C7—C3—C4—C5 | −179.10 (17) | N24—N23—C27—C26 | −2.6 (2) |
C3—C4—C5—N6 | −0.1 (3) | N23—C27—C26—C25 | 3.1 (2) |
C3—C4—C5—C15 | 179.57 (18) | C28—C27—C26—C25 | −118.58 (19) |
C4—C5—N6—C1 | −0.5 (3) | C27—C26—C25—N24 | −3.1 (3) |
C15—C5—N6—C1 | 179.76 (16) | C27—C26—C25—C36 | 177.7 (2) |
N2—C1—N6—C5 | 1.6 (3) | C36—C25—N24—N23 | −179.24 (18) |
N23—C1—N6—C5 | −179.23 (17) | C26—C25—N24—N23 | 1.5 (3) |
N2—C3—C7—C8 | −0.9 (3) | C1—N23—N24—C25 | −164.00 (19) |
C4—C3—C7—C8 | 178.11 (19) | C27—N23—N24—C25 | 0.8 (2) |
N2—C3—C7—C12 | 179.56 (19) | N23—C27—C28—C29 | 143.75 (19) |
C4—C3—C7—C12 | −1.4 (3) | C26—C27—C28—C29 | −101.4 (2) |
C12—C7—C8—C9 | 0.7 (3) | N23—C27—C28—C33 | −39.5 (3) |
C3—C7—C8—C9 | −178.9 (2) | C26—C27—C28—C33 | 75.3 (2) |
C7—C8—C9—C10 | −0.9 (4) | C33—C28—C29—C30 | −0.4 (3) |
C8—C9—C10—O13 | 179.4 (2) | C27—C28—C29—C30 | 176.5 (2) |
C8—C9—C10—C11 | 1.0 (3) | C28—C29—C30—C31 | 0.0 (4) |
O13—C10—C11—C12 | −179.4 (2) | C29—C30—C31—O34 | 179.3 (2) |
C9—C10—C11—C12 | −0.9 (3) | C29—C30—C31—C32 | 0.4 (4) |
C10—C11—C12—C7 | 0.7 (3) | O34—C31—C32—C33 | −179.5 (2) |
C8—C7—C12—C11 | −0.5 (3) | C30—C31—C32—C33 | −0.5 (3) |
C3—C7—C12—C11 | 179.02 (19) | C31—C32—C33—C28 | 0.2 (3) |
C9—C10—O13—C14 | −2.3 (3) | C29—C28—C33—C32 | 0.3 (3) |
C11—C10—O13—C14 | 176.2 (2) | C27—C28—C33—C32 | −176.56 (19) |
N6—C5—C15—C20 | −9.0 (3) | C30—C31—O34—C35 | 0.5 (4) |
C4—C5—C15—C20 | 171.3 (2) | C32—C31—O34—C35 | 179.4 (3) |
N6—C5—C15—C16 | 169.18 (19) | N24—C25—C36—C41 | −10.5 (3) |
C4—C5—C15—C16 | −10.5 (3) | C26—C25—C36—C41 | 168.6 (2) |
C20—C15—C16—C17 | 1.0 (3) | N24—C25—C36—C37 | 168.4 (2) |
C5—C15—C16—C17 | −177.3 (2) | C26—C25—C36—C37 | −12.5 (3) |
C15—C16—C17—C18 | 0.1 (4) | C41—C36—C37—C38 | 0.4 (4) |
C16—C17—C18—O21 | 178.4 (2) | C25—C36—C37—C38 | −178.5 (3) |
C16—C17—C18—C19 | −1.2 (4) | C36—C37—C38—C39 | −0.5 (5) |
O21—C18—C19—C20 | −178.5 (2) | C37—C38—C39—C40 | 0.2 (5) |
C17—C18—C19—C20 | 1.1 (4) | C37—C38—C39—O42 | −179.0 (3) |
C16—C15—C20—C19 | −1.0 (3) | C38—C39—C40—C41 | 0.2 (4) |
C5—C15—C20—C19 | 177.3 (2) | O42—C39—C40—C41 | 179.4 (3) |
C18—C19—C20—C15 | 0.0 (4) | C39—C40—C41—C36 | −0.3 (4) |
C19—C18—O21—C22 | 3.8 (3) | C37—C36—C41—C40 | 0.0 (4) |
C17—C18—O21—C22 | −175.8 (2) | C25—C36—C41—C40 | 178.9 (2) |
N2—C1—N23—N24 | −9.5 (3) | C38—C39—O42—C43 | 177.1 (3) |
N6—C1—N23—N24 | 171.21 (17) | C40—C39—O42—C43 | −2.1 (4) |
Experimental details
Crystal data | |
Chemical formula | C35H32N4O4 |
Mr | 572.65 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 21.637 (2), 5.9532 (4), 24.749 (2) |
β (°) | 109.519 (10) |
V (Å3) | 3004.7 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.3 × 0.2 × 0.2 |
Data collection | |
Diffractometer | Agilent Xcalibur Sapphire3 |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) |
Tmin, Tmax | 0.887, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12486, 5824, 3423 |
Rint | 0.028 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.052, 0.145, 1.05 |
No. of reflections | 5824 |
No. of parameters | 393 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.16, −0.15 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2010), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), PLATON (Spek, 2009).
Acknowledgements
RK acknowledges the Department of Science and Technology for access to the single-crystal X-ray diffractometer sanctioned as a national facility under project No. SR/S2/CMP-47/2003. BN thanks the UGC for financial assistance through a BSR one-time grant for the purchase of chemicals.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The importance of pyrimidines and analogous compounds in pharmaceutical and biological fields is well known. Some substituted pyrimidines and their derivatives have been reported to possess antimicrobial and antifungal activities (El-Hashash et al., 1993). It has incidental antiviral activity against herpes and vaccinia infections (Calabresi et al., 1975). With the development of clinically useful pyrimidine based antitumor and antiviral drugs there has been noticeable interest in synthetic manipulations of pyrimidines. In view of the biological importance of pyrimidines and in continuation of work on synthesis of various derivatives of chalcone (Samshuddin et al., 2011; Fun et al., 2010; Jasinski et al., 2010; Baktır et al., 2011; Betz et al., 2012), the title compound is prepared and its crystal structure is reported.
The molecule comprises of the pyrimidine ring, pyrazole ring, and four methoxy substituted benzene rings. All bond lengths and angles are normal and correspond to those observed in related structure (Fun et al., 2012). The six bond lengths in the pyrimidine ring lie in the range 1.337 (2)–1.396 (3) Å. The pyrimidine ring and pyrazole ring are individually planar with maximum deviations from the respective least-squares planes of: 0.010 (2) Å for C1 and 0.021 (3) Å for C26. Three intramolecular interactions C8—H8···N2, C20—H20···N6 and C41—H41···N24 are observed which lock the molecular conformation and thus eliminating conformational flexibility (Fig. 1). The pyrazole ring forms a dihedral angle of 15.04 (8)° with the adjacent pyrimidine ring (maximum deviation = -0.0176 (2) Å at atom C27). The pyrimidine ring forms dihedral angles of 9.95 (8) and 1.86 (7)° with its adjacent methoxy-substituted benzene rings (C15···C20 & C7···C12, respectively), whereas for pyrazole ring these angles are 80.24 (9) and 11.55 (9)° (C28···C33 & C36···C41, respectively). Molecules in the crystal are packed together to form layers, which appear to be extending diagonally along the ac plane (Fig. 2). Examination of non-bonded contacts reveals no classical intermolecular hydrogen bonds. The crystal structure is stabilized by π–π interaction between the pyrimidine ring of the molecule at (x, y, z) and benzene ring (C7···C12) at (1 - x, -y, 1 - z) [centroid separation = 3.604 (1) Å, interplanar spacing = 3.45 Å and centroid shift = 1.06 Å].