organic compounds
(Z)-3-Benzyl-1,5-benzothiazepin-4(5H)-one
aDepartment of Physics, Presidency College (Autonomous), Chennai 600 005, India, and bDepartment of Organic Chemistry, University of Madras, Chennai 600 025, India
*Correspondence e-mail: aravindhanpresidency@gmail.com
In the 16H13NOS, molecules are linked into cyclic centrosymmetric R22(8) dimers via pairs of N—H⋯O hydrogen bonds. The seven-membered ring adopts a boat conformation.
of the title compound, CRelated literature
For the pharmaceutical properties of thiazepin derivatives, see: Tomascovic et al. (2000); Rajsner et al. (1971); Metys et al. (1965). For conformations of thiazepin derivatives, see: Huang et al. (2011). For a related structure, see: Sabari et al. (2012).For graph-set analysis of hydrogen bonds, see: Bernstein et al. (1995).
Experimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536812029054/bt5942sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812029054/bt5942Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536812029054/bt5942Isup3.cml
A mixture of (Z)-methyl 2-(bromomethyl)-3-phenylacrylate (2 mmol) and o-aminothiophenol (2 mmol) in the presence of potassium tert-butoxide (4.8 mmol) in dry THF (10 ml) was stirred at room temperature for 1 h. After the completion of the reaction as indicated by TLC, the reaction mixture was concentrated and the resulting crude mass was diluted with water (20 ml) and extracted with ethyl acetate (3 x 20 ml). The organic layer was washed with brine (2 x 20 ml) and dried over anhydrous sodium sulfate. The organic layer was concentrated, which successfully provide the crude final product ((Z)-3-benzylbenzo[b][1,4]thiazepin-4(5H)-one). The final product was purified by
on silica gel to afford the title compound 41% yields.The title compound is used as an intermediate for the synthesis of dosulepin, which is an antidepressant of the tricyclic family. Dosulepin prevents reabsorbing of serotonin and noradrenaline in the brain, helps to prolong the mood lightening effect of any released noradrenaline and serotonin, thus relieving depression. The dibenzo[c,e]thiazepin derivatives exhibit chiroptical properties (Tomascovic et al., 2000). Dibenzo[b,e]thiazepin-5,5-dioxide derivatives possess antihistaminic and antiallergenic activities (Rajsner et al., 1971). Benzene thiazepin derivatives are identified as a new type of effective antihistaminic compounds (Metys et al., 1965). Considering the wide range of biological activities of the thiazepin derivatives, we determined the
of the title compound.X-Ray analysis confirms the molecular structure and atom connectivity as illustrated in Fig. 1. The seven membered thiazepin ring adopts a boat conformation (Huang et al., 2011). The atom O1 deviates by 1.0431 (11) Å from the least-squares plane of the thiazepin ring. The sum of the bond angles around the N1 atom (357.73°) of the thiazepin ring is in agreement with sp2
The molecules are linked into cyclic centrosymmetric dimers via N—H···O hydrogen bonds with the motif R22(8) (Bernstein et al., 1995).For the pharmaceutical properties of thiazepin derivatives, see: Tomascovic et al. (2000); Rajsner et al. (1971); Metys et al. (1965). For a related structure, see: Sabari <it> et al.</it> (2012). For conformations of thiazepin derivatives, see: Huang et al. (2011). For graph-set analysis of hydrogen bonds, see: Bernstein et al. (1995).
Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).C16H13NOS | F(000) = 560 |
Mr = 267.33 | Dx = 1.368 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 8725 reflections |
a = 9.3409 (6) Å | θ = 2.8–29.1° |
b = 11.7876 (7) Å | µ = 0.24 mm−1 |
c = 11.8310 (6) Å | T = 293 K |
β = 94.727 (3)° | Monoclinic, colourless |
V = 1298.24 (13) Å3 | 0.32 × 0.20 × 0.10 mm |
Z = 4 |
Bruker SMART APEXII CCD diffractometer | 3220 independent reflections |
Radiation source: fine-focus sealed tube | 2700 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
Detector resolution: 15.9948 pixels mm-1 | θmax = 28.3°, θmin = 2.2° |
ω and φ scans | h = −12→12 |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | k = −12→15 |
Tmin = 0.980, Tmax = 0.990 | l = −15→15 |
11696 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.100 | All H-atom parameters refined |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0473P)2 + 0.3853P] where P = (Fo2 + 2Fc2)/3 |
3220 reflections | (Δ/σ)max = 0.001 |
224 parameters | Δρmax = 0.25 e Å−3 |
0 restraints | Δρmin = −0.31 e Å−3 |
C16H13NOS | V = 1298.24 (13) Å3 |
Mr = 267.33 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 9.3409 (6) Å | µ = 0.24 mm−1 |
b = 11.7876 (7) Å | T = 293 K |
c = 11.8310 (6) Å | 0.32 × 0.20 × 0.10 mm |
β = 94.727 (3)° |
Bruker SMART APEXII CCD diffractometer | 3220 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 2700 reflections with I > 2σ(I) |
Tmin = 0.980, Tmax = 0.990 | Rint = 0.024 |
11696 measured reflections |
R[F2 > 2σ(F2)] = 0.036 | 0 restraints |
wR(F2) = 0.100 | All H-atom parameters refined |
S = 1.03 | Δρmax = 0.25 e Å−3 |
3220 reflections | Δρmin = −0.31 e Å−3 |
224 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
H10A | 0.9319 (19) | 0.4199 (16) | 1.0576 (15) | 0.054 (5)* | |
H14 | 1.158 (2) | 0.0216 (19) | 1.2706 (18) | 0.071 (6)* | |
H13 | 1.253 (3) | 0.210 (2) | 1.287 (2) | 0.090 (7)* | |
H2 | 0.520 (2) | 0.0349 (17) | 0.7510 (18) | 0.067 (6)* | |
H4 | 0.264 (2) | 0.0652 (19) | 1.0082 (18) | 0.075 (6)* | |
H3 | 0.341 (2) | −0.0401 (19) | 0.8584 (18) | 0.078 (6)* | |
H5 | 0.367 (2) | 0.2445 (15) | 1.0477 (16) | 0.051 (5)* | |
H9 | 0.906 (2) | 0.2452 (13) | 0.8225 (15) | 0.047 (4)* | |
H12 | 1.152 (2) | 0.3537 (18) | 1.1720 (16) | 0.066 (6)* | |
H16 | 0.8605 (18) | 0.1324 (14) | 1.0263 (14) | 0.048 (4)* | |
H15 | 0.960 (2) | −0.0149 (19) | 1.1441 (18) | 0.075 (6)* | |
H | 0.4802 (19) | 0.4003 (15) | 0.9656 (14) | 0.050 (5)* | |
H10B | 1.0195 (19) | 0.3709 (15) | 0.9641 (15) | 0.053 (5)* | |
S1 | 0.67169 (4) | 0.23482 (4) | 0.74334 (3) | 0.04629 (13) | |
O1 | 0.69525 (11) | 0.49768 (9) | 1.00015 (11) | 0.0515 (3) | |
N1 | 0.54541 (12) | 0.35755 (9) | 0.94400 (10) | 0.0376 (3) | |
C9 | 0.81284 (15) | 0.27217 (12) | 0.84256 (12) | 0.0377 (3) | |
C1 | 0.54547 (14) | 0.18101 (11) | 0.83286 (11) | 0.0361 (3) | |
C8 | 0.80771 (13) | 0.33382 (10) | 0.93653 (11) | 0.0326 (3) | |
C7 | 0.67881 (14) | 0.40033 (11) | 0.96316 (11) | 0.0345 (3) | |
C10 | 0.94322 (15) | 0.35387 (12) | 1.01201 (13) | 0.0397 (3) | |
C6 | 0.49997 (14) | 0.24447 (10) | 0.92206 (11) | 0.0332 (3) | |
C11 | 0.99742 (13) | 0.25642 (11) | 1.08739 (11) | 0.0335 (3) | |
C16 | 0.94145 (15) | 0.14763 (12) | 1.08123 (12) | 0.0396 (3) | |
C12 | 1.11413 (16) | 0.27689 (16) | 1.16571 (13) | 0.0490 (4) | |
C5 | 0.39623 (16) | 0.20069 (14) | 0.98728 (14) | 0.0448 (3) | |
C14 | 1.11727 (19) | 0.08314 (19) | 1.22626 (15) | 0.0599 (5) | |
C13 | 1.17296 (18) | 0.1913 (2) | 1.23380 (15) | 0.0628 (5) | |
C2 | 0.48567 (18) | 0.07488 (14) | 0.80956 (15) | 0.0511 (4) | |
C15 | 1.00050 (19) | 0.06142 (15) | 1.15013 (14) | 0.0508 (4) | |
C4 | 0.33594 (18) | 0.09600 (16) | 0.96179 (17) | 0.0568 (4) | |
C3 | 0.37969 (19) | 0.03362 (15) | 0.87283 (18) | 0.0613 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0532 (2) | 0.0562 (2) | 0.02983 (18) | −0.00076 (17) | 0.00540 (15) | −0.00396 (14) |
O1 | 0.0427 (6) | 0.0312 (5) | 0.0809 (8) | 0.0002 (4) | 0.0071 (5) | −0.0154 (5) |
N1 | 0.0322 (6) | 0.0297 (5) | 0.0512 (7) | 0.0043 (4) | 0.0054 (5) | −0.0075 (5) |
C9 | 0.0372 (7) | 0.0390 (7) | 0.0381 (7) | 0.0021 (5) | 0.0096 (5) | 0.0012 (5) |
C1 | 0.0350 (6) | 0.0356 (7) | 0.0370 (6) | 0.0033 (5) | −0.0019 (5) | −0.0029 (5) |
C8 | 0.0327 (6) | 0.0275 (6) | 0.0382 (6) | −0.0004 (5) | 0.0067 (5) | 0.0038 (5) |
C7 | 0.0363 (6) | 0.0280 (6) | 0.0396 (6) | 0.0018 (5) | 0.0054 (5) | −0.0013 (5) |
C10 | 0.0339 (7) | 0.0322 (7) | 0.0530 (8) | −0.0054 (5) | 0.0037 (6) | −0.0020 (6) |
C6 | 0.0301 (6) | 0.0311 (6) | 0.0377 (6) | 0.0021 (5) | −0.0018 (5) | −0.0018 (5) |
C11 | 0.0258 (6) | 0.0411 (7) | 0.0340 (6) | −0.0021 (5) | 0.0057 (5) | −0.0062 (5) |
C16 | 0.0374 (7) | 0.0402 (7) | 0.0403 (7) | −0.0027 (6) | −0.0011 (5) | 0.0001 (6) |
C12 | 0.0338 (7) | 0.0670 (10) | 0.0457 (8) | −0.0105 (7) | 0.0010 (6) | −0.0089 (7) |
C5 | 0.0367 (7) | 0.0492 (8) | 0.0489 (8) | −0.0044 (6) | 0.0063 (6) | −0.0045 (7) |
C14 | 0.0478 (9) | 0.0839 (13) | 0.0477 (9) | 0.0169 (9) | 0.0033 (7) | 0.0187 (9) |
C13 | 0.0374 (8) | 0.1029 (16) | 0.0461 (9) | −0.0014 (9) | −0.0081 (7) | 0.0013 (9) |
C2 | 0.0507 (9) | 0.0421 (8) | 0.0593 (9) | 0.0009 (7) | −0.0025 (7) | −0.0175 (7) |
C15 | 0.0534 (9) | 0.0482 (9) | 0.0509 (8) | 0.0051 (7) | 0.0045 (7) | 0.0096 (7) |
C4 | 0.0458 (9) | 0.0543 (10) | 0.0705 (11) | −0.0141 (7) | 0.0066 (8) | 0.0015 (8) |
C3 | 0.0529 (10) | 0.0412 (9) | 0.0888 (13) | −0.0142 (7) | −0.0001 (9) | −0.0104 (9) |
S1—C9 | 1.7479 (15) | C11—C12 | 1.392 (2) |
S1—C1 | 1.7663 (14) | C16—C15 | 1.388 (2) |
O1—C7 | 1.2332 (16) | C16—H16 | 0.972 (17) |
N1—C7 | 1.3460 (17) | C12—C13 | 1.377 (3) |
N1—C6 | 1.4165 (16) | C12—H12 | 0.97 (2) |
N1—H | 0.846 (18) | C5—C4 | 1.379 (2) |
C9—C8 | 1.3324 (19) | C5—H5 | 0.942 (19) |
C9—H9 | 0.976 (18) | C14—C13 | 1.377 (3) |
C1—C2 | 1.388 (2) | C14—C15 | 1.380 (3) |
C1—C6 | 1.3885 (18) | C14—H14 | 0.96 (2) |
C8—C7 | 1.4920 (17) | C13—H13 | 0.96 (3) |
C8—C10 | 1.5064 (19) | C2—C3 | 1.378 (3) |
C10—C11 | 1.515 (2) | C2—H2 | 0.92 (2) |
C10—H10A | 0.958 (19) | C15—H15 | 0.98 (2) |
C10—H10B | 0.968 (18) | C4—C3 | 1.373 (3) |
C6—C5 | 1.387 (2) | C4—H4 | 0.97 (2) |
C11—C16 | 1.3845 (19) | C3—H3 | 0.95 (2) |
C9—S1—C1 | 101.05 (6) | C11—C16—C15 | 121.13 (14) |
C7—N1—C6 | 129.99 (11) | C11—C16—H16 | 118.4 (10) |
C7—N1—H | 114.0 (12) | C15—C16—H16 | 120.4 (10) |
C6—N1—H | 113.8 (12) | C13—C12—C11 | 121.01 (17) |
C8—C9—S1 | 128.37 (11) | C13—C12—H12 | 120.7 (12) |
C8—C9—H9 | 118.4 (10) | C11—C12—H12 | 118.2 (12) |
S1—C9—H9 | 113.2 (10) | C4—C5—C6 | 120.17 (15) |
C2—C1—C6 | 119.54 (13) | C4—C5—H5 | 121.1 (11) |
C2—C1—S1 | 118.81 (11) | C6—C5—H5 | 118.7 (11) |
C6—C1—S1 | 121.57 (10) | C13—C14—C15 | 119.21 (16) |
C9—C8—C7 | 123.22 (12) | C13—C14—H14 | 122.2 (13) |
C9—C8—C10 | 119.61 (12) | C15—C14—H14 | 118.5 (13) |
C7—C8—C10 | 116.46 (12) | C14—C13—C12 | 120.67 (16) |
O1—C7—N1 | 119.66 (12) | C14—C13—H13 | 121.2 (15) |
O1—C7—C8 | 119.00 (12) | C12—C13—H13 | 118.1 (15) |
N1—C7—C8 | 121.30 (11) | C3—C2—C1 | 120.36 (15) |
C8—C10—C11 | 116.97 (11) | C3—C2—H2 | 122.7 (13) |
C8—C10—H10A | 109.6 (11) | C1—C2—H2 | 117.0 (13) |
C11—C10—H10A | 109.4 (11) | C14—C15—C16 | 120.12 (17) |
C8—C10—H10B | 107.9 (10) | C14—C15—H15 | 120.0 (12) |
C11—C10—H10B | 106.0 (11) | C16—C15—H15 | 119.9 (13) |
H10A—C10—H10B | 106.3 (15) | C3—C4—C5 | 120.30 (16) |
C5—C6—C1 | 119.61 (13) | C3—C4—H4 | 119.7 (13) |
C5—C6—N1 | 117.44 (12) | C5—C4—H4 | 120.0 (13) |
C1—C6—N1 | 122.71 (12) | C4—C3—C2 | 119.98 (16) |
C16—C11—C12 | 117.84 (14) | C4—C3—H3 | 119.7 (13) |
C16—C11—C10 | 124.38 (12) | C2—C3—H3 | 120.2 (13) |
C12—C11—C10 | 117.75 (13) | ||
C1—S1—C9—C8 | −49.95 (14) | C7—N1—C6—C1 | −56.6 (2) |
C9—S1—C1—C2 | −128.63 (12) | C8—C10—C11—C16 | 8.3 (2) |
C9—S1—C1—C6 | 54.52 (12) | C8—C10—C11—C12 | −173.77 (12) |
S1—C9—C8—C7 | −11.3 (2) | C12—C11—C16—C15 | −0.6 (2) |
S1—C9—C8—C10 | 178.70 (10) | C10—C11—C16—C15 | 177.38 (14) |
C6—N1—C7—O1 | −167.26 (14) | C16—C11—C12—C13 | 0.8 (2) |
C6—N1—C7—C8 | 15.0 (2) | C10—C11—C12—C13 | −177.31 (14) |
C9—C8—C7—O1 | −135.97 (15) | C1—C6—C5—C4 | −1.7 (2) |
C10—C8—C7—O1 | 34.35 (18) | N1—C6—C5—C4 | 172.74 (14) |
C9—C8—C7—N1 | 41.8 (2) | C15—C14—C13—C12 | −0.6 (3) |
C10—C8—C7—N1 | −147.91 (13) | C11—C12—C13—C14 | −0.2 (3) |
C9—C8—C10—C11 | −76.59 (17) | C6—C1—C2—C3 | 1.4 (2) |
C7—C8—C10—C11 | 112.72 (14) | S1—C1—C2—C3 | −175.52 (14) |
C2—C1—C6—C5 | 0.5 (2) | C13—C14—C15—C16 | 0.8 (3) |
S1—C1—C6—C5 | 177.32 (11) | C11—C16—C15—C14 | −0.2 (2) |
C2—C1—C6—N1 | −173.63 (13) | C6—C5—C4—C3 | 1.0 (3) |
S1—C1—C6—N1 | 3.20 (18) | C5—C4—C3—C2 | 0.9 (3) |
C7—N1—C6—C5 | 129.13 (16) | C1—C2—C3—C4 | −2.1 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H···O1i | 0.847 (18) | 2.098 (19) | 2.9407 (15) | 173.1 (16) |
Symmetry code: (i) −x+1, −y+1, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C16H13NOS |
Mr | 267.33 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 9.3409 (6), 11.7876 (7), 11.8310 (6) |
β (°) | 94.727 (3) |
V (Å3) | 1298.24 (13) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.24 |
Crystal size (mm) | 0.32 × 0.20 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2008) |
Tmin, Tmax | 0.980, 0.990 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11696, 3220, 2700 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.667 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.036, 0.100, 1.03 |
No. of reflections | 3220 |
No. of parameters | 224 |
H-atom treatment | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.25, −0.31 |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SHELXS97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H···O1i | 0.847 (18) | 2.098 (19) | 2.9407 (15) | 173.1 (16) |
Symmetry code: (i) −x+1, −y+1, −z+2. |
Acknowledgements
SA thanks the UGC, India, for financial support.
References
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The title compound is used as an intermediate for the synthesis of dosulepin, which is an antidepressant of the tricyclic family. Dosulepin prevents reabsorbing of serotonin and noradrenaline in the brain, helps to prolong the mood lightening effect of any released noradrenaline and serotonin, thus relieving depression. The dibenzo[c,e]thiazepin derivatives exhibit chiroptical properties (Tomascovic et al., 2000). Dibenzo[b,e]thiazepin-5,5-dioxide derivatives possess antihistaminic and antiallergenic activities (Rajsner et al., 1971). Benzene thiazepin derivatives are identified as a new type of effective antihistaminic compounds (Metys et al., 1965). Considering the wide range of biological activities of the thiazepin derivatives, we determined the crystal structure of the title compound.
X-Ray analysis confirms the molecular structure and atom connectivity as illustrated in Fig. 1. The seven membered thiazepin ring adopts a boat conformation (Huang et al., 2011). The atom O1 deviates by 1.0431 (11) Å from the least-squares plane of the thiazepin ring. The sum of the bond angles around the N1 atom (357.73°) of the thiazepin ring is in agreement with sp2 hybridization. The molecules are linked into cyclic centrosymmetric dimers via N—H···O hydrogen bonds with the motif R22(8) (Bernstein et al., 1995).