organic compounds
N-(2-{[5-Bromo-2-(morpholin-4-yl)pyrimidin-4-yl]sulfanyl}-4-methoxyphenyl)-4-methylbenzenesulfonamide
aX-ray Crystallography Laboratory, Post-Graduate Department of Physics & Electronics, University of Jammu, Jammu Tawi 180 006, India, bDepartment of Studies in Physics, Manasagangotri, University of Mysore, Mysore 570 006, India, and cPG Department of Studies in Chemistry, JSS College of Arts Commerce and Science, Ooty Road Mysore 570 025, India
*Correspondence e-mail: rkvk.paper11@gmail.com
In the title compound, C22H23BrN4O4S2, the benzene rings bridged by the sulfonamide group are tilted relative to each other by 68.9 (1)° and the dihedral angle between the sulfur-bridged pyrimidine and benzene rings is 69.7 (1)°. The molecular conformation is stabilized by a weak intramolecular π–π stacking interaction between the pyrimidine and the 4-methylbenzene rings [centroid–centroid distance = 3.934 (2) Å]. The morpholine ring adopts a chair conformation and is disordered over two positions with an occupancy ratio of 0.853 (6):0.147 (6). In the crystal, molecules are linked by N—H⋯O hydrogen bonds into chains extending along the a axis and further, through C—H⋯N and C—H⋯O interactions, into a three-dimensional supramolecular structure.
Related literature
For the crystal structures of et al. (2011); Akkurt et al. (2011). For their biological activity, see: Gao & Pederson (2005). For bond-length data, see: Allen et al. (1987). For ring asymmetry parameters and conformations, see: Duax & Norton (1975).
see: RodriguesExperimental
Crystal data
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Refinement
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Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536812033375/gk2516sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812033375/gk2516Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536812033375/gk2516Isup3.cml
The reaction of N-[2-(5-bromo-2-chloro-pyrimidin-4-ylsulfanyl)-4-methoxy-phenyl]- 4-methyl-benzenesulfonamide (5.01 g, 0.01 mol) with morpholine (0.88g, 0.01) were carried out in the presence of triethylamine and the reaction mixture was allowed to stir at room temperature for 6-7 h in dry dichloromethane. The progress of the reaction was monitored by TLC. Upon completion, the solvent was removed under reduced pressure and the residue was extracted with ethyl acetate. The compound was purified by successive recrystallization from methanol (yield 84%, m.p. 485-487 K).
The N-bound H atom was located in a difference Fourier map and constrained to lie 0.86 (1) Å from the parent atom. All other H atoms were positioned geometrically and were treated as riding on their parent C atoms, with C—H distances of 0.93–0.97 Å with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(methyl C).
The amide and sulfonamide moieties are the constituents of many biologically significant compounds. Sulfonamide compounds are well known as antimicrobial agents (Gao & Pederson, 2005). In the present work, the
of N-[2-(5-bromo-2-morpholin-4-yl-pyrimidin-4-ylsulfanyl)-4-methoxy-phenyl]-4- methyl-benzenesulfonamide has been determined.Bond lengths and angles in the title compound (Fig. 1) have normal values (Allen et al., 1987) and are comparable with the similar crystal structures (Rodrigues et al., 2011; Akkurt et al., 2011). The morpholine ring is disordered over two positions with the occupancy ratio of 0.853 (6):0.147 (6) and adopts chair conformation (asymmetry parameters:ΔCs(C24A—C27A) = 1.30; ΔC2(C24A—C25A) = 1.59; ΔCs(C25B—C28B) = 2.37; ΔC2(C25B—O26B) = 3.65 (Duax & Norton, 1975). The two benzene rings are tilted relative to each other by 68.9 (1)°. The dihedral angle formed by the pyrimidine ring with two benzene rings (C9—C14/C1—C6) are 69.7 (1) and 2.2 (1)°, respectively. In the crystal, molecules are connected via N—H···O, C—H···N and C—H···O hydrogen bonds.
For the crystal structures of
see: Rodrigues et al. (2011); Akkurt et al. (2011). For their biological activity, see: Gao & Pederson (2005). For bond-length data, see: Allen et al. (1987). For ring asymmetry parameters and conformations, see: Duax & Norton (1975).Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell
CrysAlis PRO (Oxford Diffraction, 2010); data reduction: CrysAlis PRO (Oxford Diffraction, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: PLATON (Spek, 2009).C22H23BrN4O4S2 | F(000) = 1128 |
Mr = 551.47 | Dx = 1.502 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 7219 reflections |
a = 10.0321 (3) Å | θ = 3.5–29.0° |
b = 17.4842 (6) Å | µ = 1.89 mm−1 |
c = 13.9095 (4) Å | T = 293 K |
β = 91.699 (3)° | Block, brown |
V = 2438.70 (13) Å3 | 0.3 × 0.2 × 0.1 mm |
Z = 4 |
Oxford Diffraction Xcalibur Sapphire3 diffractometer | 4783 independent reflections |
Radiation source: fine-focus sealed tube | 3361 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.040 |
Detector resolution: 16.1049 pixels mm-1 | θmax = 26.0°, θmin = 3.7° |
ω scans | h = −12→12 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) | k = −21→21 |
Tmin = 0.557, Tmax = 1.000 | l = −17→17 |
21500 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.041 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.086 | w = 1/[σ2(Fo2) + (0.0237P)2 + 2.0098P] where P = (Fo2 + 2Fc2)/3 |
S = 1.01 | (Δ/σ)max = 0.001 |
4783 reflections | Δρmax = 0.53 e Å−3 |
321 parameters | Δρmin = −0.46 e Å−3 |
1 restraint | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0044 (3) |
C22H23BrN4O4S2 | V = 2438.70 (13) Å3 |
Mr = 551.47 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 10.0321 (3) Å | µ = 1.89 mm−1 |
b = 17.4842 (6) Å | T = 293 K |
c = 13.9095 (4) Å | 0.3 × 0.2 × 0.1 mm |
β = 91.699 (3)° |
Oxford Diffraction Xcalibur Sapphire3 diffractometer | 4783 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) | 3361 reflections with I > 2σ(I) |
Tmin = 0.557, Tmax = 1.000 | Rint = 0.040 |
21500 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | 1 restraint |
wR(F2) = 0.086 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.01 | Δρmax = 0.53 e Å−3 |
4783 reflections | Δρmin = −0.46 e Å−3 |
321 parameters |
Experimental. CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27–08-2010 CrysAlis171. NET) (compiled Aug 27 2010,11:50:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Br1 | 0.83360 (4) | 0.11861 (2) | 0.46770 (3) | 0.06867 (15) | |
S1 | 0.87974 (10) | 0.20496 (6) | 0.92605 (6) | 0.0704 (3) | |
S2 | 0.80399 (7) | 0.25279 (5) | 0.62864 (5) | 0.0479 (2) | |
O1 | 1.0028 (3) | 0.16380 (17) | 0.9297 (2) | 0.0948 (9) | |
O2 | 0.8356 (3) | 0.24415 (16) | 1.00940 (17) | 0.0942 (9) | |
C1 | 0.7515 (3) | 0.14086 (19) | 0.8915 (2) | 0.0580 (9) | |
C2 | 0.7717 (4) | 0.0890 (2) | 0.8185 (3) | 0.0658 (9) | |
H2 | 0.8513 | 0.0896 | 0.7858 | 0.079* | |
C3 | 0.6747 (4) | 0.0365 (2) | 0.7942 (3) | 0.0705 (10) | |
H3 | 0.6889 | 0.0025 | 0.7441 | 0.085* | |
C4 | 0.5572 (4) | 0.0332 (2) | 0.8422 (3) | 0.0750 (11) | |
C5 | 0.5381 (4) | 0.0859 (3) | 0.9135 (3) | 0.0899 (13) | |
H5 | 0.4585 | 0.0852 | 0.9462 | 0.108* | |
C6 | 0.6332 (4) | 0.1399 (2) | 0.9384 (3) | 0.0805 (11) | |
H6 | 0.6173 | 0.1754 | 0.9865 | 0.097* | |
C7 | 0.4547 (5) | −0.0272 (3) | 0.8165 (4) | 0.1122 (16) | |
H71 | 0.3785 | −0.0209 | 0.8559 | 0.168* | |
H72 | 0.4926 | −0.0770 | 0.8274 | 0.168* | |
H73 | 0.4279 | −0.0222 | 0.7500 | 0.168* | |
N8 | 0.8941 (3) | 0.26764 (16) | 0.84004 (19) | 0.0557 (7) | |
C9 | 0.7866 (3) | 0.31561 (17) | 0.8096 (2) | 0.0451 (7) | |
C10 | 0.7358 (3) | 0.31454 (16) | 0.71564 (19) | 0.0415 (7) | |
C11 | 0.6332 (3) | 0.36306 (17) | 0.6863 (2) | 0.0465 (7) | |
H11 | 0.6023 | 0.3627 | 0.6226 | 0.056* | |
C12 | 0.5771 (3) | 0.41192 (18) | 0.7516 (2) | 0.0510 (8) | |
C13 | 0.6270 (3) | 0.41381 (19) | 0.8452 (2) | 0.0575 (9) | |
H13 | 0.5896 | 0.4468 | 0.8894 | 0.069* | |
C14 | 0.7313 (3) | 0.36729 (19) | 0.8733 (2) | 0.0552 (8) | |
H14 | 0.7657 | 0.3704 | 0.9361 | 0.066* | |
O15 | 0.4760 (2) | 0.46199 (13) | 0.72933 (18) | 0.0700 (7) | |
C16 | 0.4322 (4) | 0.4661 (2) | 0.6311 (3) | 0.0917 (13) | |
H161 | 0.5074 | 0.4750 | 0.5915 | 0.138* | |
H162 | 0.3695 | 0.5072 | 0.6229 | 0.138* | |
H163 | 0.3902 | 0.4187 | 0.6127 | 0.138* | |
C17 | 0.6708 (3) | 0.18839 (16) | 0.61096 (18) | 0.0383 (6) | |
N18 | 0.5635 (2) | 0.19533 (13) | 0.66305 (15) | 0.0399 (5) | |
C19 | 0.4636 (3) | 0.14544 (17) | 0.6460 (2) | 0.0435 (7) | |
N20 | 0.4648 (3) | 0.08807 (15) | 0.5818 (2) | 0.0587 (7) | |
C21 | 0.5749 (3) | 0.08278 (19) | 0.5312 (2) | 0.0606 (9) | |
H21 | 0.5801 | 0.0439 | 0.4858 | 0.073* | |
C22 | 0.6803 (3) | 0.13110 (17) | 0.5425 (2) | 0.0471 (7) | |
N23 | 0.3546 (2) | 0.15296 (15) | 0.70003 (19) | 0.0545 (7) | |
C24A | 0.2340 (5) | 0.1087 (3) | 0.6840 (4) | 0.0640 (14) | 0.853 (6) |
H241 | 0.2103 | 0.0832 | 0.7430 | 0.077* | 0.853 (6) |
H242 | 0.2484 | 0.0699 | 0.6355 | 0.077* | 0.853 (6) |
C25A | 0.1230 (4) | 0.1615 (3) | 0.6511 (4) | 0.0714 (15) | 0.853 (6) |
H251 | 0.1428 | 0.1825 | 0.5886 | 0.086* | 0.853 (6) |
H252 | 0.0403 | 0.1329 | 0.6447 | 0.086* | 0.853 (6) |
O26A | 0.1073 (7) | 0.2244 (3) | 0.7210 (6) | 0.093 (2) | 0.853 (6) |
C27A | 0.2260 (4) | 0.2649 (3) | 0.7336 (4) | 0.0690 (14) | 0.853 (6) |
H271 | 0.2130 | 0.3061 | 0.7791 | 0.083* | 0.853 (6) |
H272 | 0.2497 | 0.2876 | 0.6728 | 0.083* | 0.853 (6) |
C28A | 0.3385 (5) | 0.2149 (3) | 0.7696 (3) | 0.0578 (14) | 0.853 (6) |
H281 | 0.4202 | 0.2444 | 0.7759 | 0.069* | 0.853 (6) |
H282 | 0.3184 | 0.1940 | 0.8321 | 0.069* | 0.853 (6) |
C24B | 0.217 (4) | 0.128 (2) | 0.650 (3) | 0.0640 (14) | 0.147 (6) |
H243 | 0.2028 | 0.1556 | 0.5906 | 0.077* | 0.147 (6) |
H244 | 0.2195 | 0.0735 | 0.6355 | 0.077* | 0.147 (6) |
C25B | 0.117 (3) | 0.143 (2) | 0.711 (3) | 0.0714 (15) | 0.147 (6) |
H253 | 0.0360 | 0.1206 | 0.6835 | 0.086* | 0.147 (6) |
H254 | 0.1368 | 0.1154 | 0.7708 | 0.086* | 0.147 (6) |
O26B | 0.097 (5) | 0.195 (3) | 0.728 (4) | 0.093 (2) | 0.147 (6) |
C27B | 0.215 (2) | 0.2360 (18) | 0.795 (2) | 0.0690 (14) | 0.147 (6) |
H273 | 0.1920 | 0.2885 | 0.8100 | 0.083* | 0.147 (6) |
H274 | 0.2302 | 0.2082 | 0.8549 | 0.083* | 0.147 (6) |
C28B | 0.333 (4) | 0.233 (2) | 0.735 (2) | 0.0578 (14) | 0.147 (6) |
H283 | 0.4109 | 0.2495 | 0.7721 | 0.069* | 0.147 (6) |
H284 | 0.3206 | 0.2667 | 0.6805 | 0.069* | 0.147 (6) |
H8 | 0.945 (2) | 0.2490 (16) | 0.7983 (17) | 0.056 (10)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0627 (2) | 0.0822 (3) | 0.0620 (2) | 0.00876 (19) | 0.01777 (17) | −0.02139 (19) |
S1 | 0.0824 (7) | 0.0747 (7) | 0.0529 (5) | 0.0012 (5) | −0.0187 (5) | 0.0044 (5) |
S2 | 0.0329 (4) | 0.0586 (5) | 0.0525 (4) | −0.0022 (4) | 0.0058 (3) | −0.0169 (4) |
O1 | 0.0833 (19) | 0.094 (2) | 0.104 (2) | 0.0119 (17) | −0.0426 (16) | 0.0176 (17) |
O2 | 0.146 (3) | 0.095 (2) | 0.0411 (13) | −0.0125 (19) | −0.0076 (14) | −0.0056 (13) |
C1 | 0.065 (2) | 0.057 (2) | 0.0509 (19) | 0.0106 (18) | −0.0055 (16) | 0.0103 (16) |
C2 | 0.056 (2) | 0.064 (2) | 0.077 (2) | 0.0132 (19) | −0.0008 (18) | −0.001 (2) |
C3 | 0.071 (2) | 0.054 (2) | 0.086 (3) | 0.014 (2) | −0.008 (2) | −0.0039 (19) |
C4 | 0.070 (3) | 0.069 (3) | 0.086 (3) | 0.002 (2) | −0.007 (2) | 0.018 (2) |
C5 | 0.071 (3) | 0.107 (4) | 0.093 (3) | −0.004 (3) | 0.018 (2) | 0.015 (3) |
C6 | 0.091 (3) | 0.086 (3) | 0.066 (2) | 0.003 (3) | 0.014 (2) | −0.001 (2) |
C7 | 0.092 (3) | 0.094 (4) | 0.150 (5) | −0.019 (3) | −0.017 (3) | 0.018 (3) |
N8 | 0.0513 (16) | 0.0634 (19) | 0.0523 (16) | 0.0050 (14) | −0.0011 (13) | −0.0056 (14) |
C9 | 0.0397 (16) | 0.0506 (19) | 0.0454 (17) | −0.0066 (14) | 0.0055 (13) | −0.0053 (14) |
C10 | 0.0342 (15) | 0.0445 (18) | 0.0461 (16) | −0.0066 (13) | 0.0063 (12) | −0.0112 (13) |
C11 | 0.0386 (16) | 0.0492 (19) | 0.0515 (17) | −0.0026 (14) | −0.0006 (13) | −0.0106 (14) |
C12 | 0.0408 (17) | 0.0457 (19) | 0.067 (2) | −0.0020 (15) | 0.0113 (15) | −0.0096 (16) |
C13 | 0.060 (2) | 0.054 (2) | 0.060 (2) | −0.0027 (18) | 0.0227 (17) | −0.0143 (17) |
C14 | 0.068 (2) | 0.058 (2) | 0.0398 (16) | −0.0088 (18) | 0.0082 (15) | −0.0064 (15) |
O15 | 0.0602 (14) | 0.0639 (16) | 0.0861 (18) | 0.0172 (13) | 0.0062 (13) | −0.0164 (13) |
C16 | 0.078 (3) | 0.088 (3) | 0.108 (3) | 0.036 (2) | −0.021 (2) | −0.021 (3) |
C17 | 0.0350 (15) | 0.0425 (17) | 0.0371 (15) | 0.0052 (13) | −0.0036 (12) | −0.0042 (13) |
N18 | 0.0323 (12) | 0.0437 (14) | 0.0435 (13) | 0.0020 (11) | −0.0002 (10) | −0.0055 (11) |
C19 | 0.0349 (15) | 0.0416 (17) | 0.0540 (17) | 0.0031 (14) | −0.0006 (13) | −0.0026 (14) |
N20 | 0.0505 (16) | 0.0478 (16) | 0.0780 (19) | −0.0068 (13) | 0.0068 (14) | −0.0197 (14) |
C21 | 0.063 (2) | 0.050 (2) | 0.069 (2) | −0.0033 (18) | 0.0038 (17) | −0.0260 (17) |
C22 | 0.0452 (17) | 0.0495 (19) | 0.0466 (17) | 0.0032 (15) | 0.0032 (13) | −0.0120 (14) |
N23 | 0.0362 (13) | 0.0539 (17) | 0.0735 (18) | −0.0021 (13) | 0.0045 (12) | −0.0110 (14) |
C24A | 0.047 (2) | 0.064 (4) | 0.081 (4) | −0.014 (2) | 0.002 (3) | 0.004 (3) |
C25A | 0.040 (2) | 0.105 (4) | 0.069 (3) | 0.007 (2) | −0.007 (2) | −0.031 (3) |
O26A | 0.0384 (19) | 0.119 (5) | 0.120 (3) | 0.016 (4) | −0.0075 (17) | −0.068 (5) |
C27A | 0.063 (3) | 0.090 (4) | 0.054 (3) | 0.020 (2) | −0.004 (2) | −0.030 (3) |
C28A | 0.0385 (18) | 0.088 (4) | 0.047 (3) | 0.003 (2) | 0.004 (2) | −0.009 (3) |
C24B | 0.047 (2) | 0.064 (4) | 0.081 (4) | −0.014 (2) | 0.002 (3) | 0.004 (3) |
C25B | 0.040 (2) | 0.105 (4) | 0.069 (3) | 0.007 (2) | −0.007 (2) | −0.031 (3) |
O26B | 0.0384 (19) | 0.119 (5) | 0.120 (3) | 0.016 (4) | −0.0075 (17) | −0.068 (5) |
C27B | 0.063 (3) | 0.090 (4) | 0.054 (3) | 0.020 (2) | −0.004 (2) | −0.030 (3) |
C28B | 0.0385 (18) | 0.088 (4) | 0.047 (3) | 0.003 (2) | 0.004 (2) | −0.009 (3) |
Br1—C22 | 1.894 (3) | C17—N18 | 1.321 (3) |
S1—O2 | 1.428 (3) | C17—C22 | 1.388 (4) |
S1—O1 | 1.428 (3) | N18—C19 | 1.344 (3) |
S1—N8 | 1.632 (3) | C19—N20 | 1.343 (4) |
S1—C1 | 1.762 (4) | C19—N23 | 1.351 (3) |
S2—C17 | 1.759 (3) | N20—C21 | 1.330 (4) |
S2—C10 | 1.774 (3) | C21—C22 | 1.359 (4) |
C1—C6 | 1.370 (5) | C21—H21 | 0.9300 |
C1—C2 | 1.382 (5) | N23—C24A | 1.448 (6) |
C2—C3 | 1.372 (5) | N23—C28A | 1.464 (6) |
C2—H2 | 0.9300 | N23—C28B | 1.49 (4) |
C3—C4 | 1.373 (5) | N23—C24B | 1.58 (4) |
C3—H3 | 0.9300 | C24A—C25A | 1.508 (8) |
C4—C5 | 1.372 (6) | C24A—H241 | 0.9700 |
C4—C7 | 1.509 (5) | C24A—H242 | 0.9700 |
C5—C6 | 1.380 (6) | C25A—O26A | 1.480 (8) |
C5—H5 | 0.9300 | C25A—H251 | 0.9700 |
C6—H6 | 0.9300 | C25A—H252 | 0.9700 |
C7—H71 | 0.9600 | O26A—C27A | 1.392 (8) |
C7—H72 | 0.9600 | C27A—C28A | 1.502 (7) |
C7—H73 | 0.9600 | C27A—H271 | 0.9700 |
N8—C9 | 1.421 (4) | C27A—H272 | 0.9700 |
N8—H8 | 0.850 (10) | C28A—H281 | 0.9700 |
C9—C10 | 1.389 (4) | C28A—H282 | 0.9700 |
C9—C14 | 1.392 (4) | C24B—C25B | 1.36 (5) |
C10—C11 | 1.385 (4) | C24B—H243 | 0.9700 |
C11—C12 | 1.379 (4) | C24B—H244 | 0.9700 |
C11—H11 | 0.9300 | C25B—O26B | 0.97 (4) |
C12—O15 | 1.369 (4) | C25B—H253 | 0.9700 |
C12—C13 | 1.381 (4) | C25B—H254 | 0.9700 |
C13—C14 | 1.373 (4) | O26B—C27B | 1.65 (5) |
C13—H13 | 0.9300 | C27B—C28B | 1.47 (4) |
C14—H14 | 0.9300 | C27B—H273 | 0.9700 |
O15—C16 | 1.424 (4) | C27B—H274 | 0.9700 |
C16—H161 | 0.9600 | C28B—H283 | 0.9700 |
C16—H162 | 0.9600 | C28B—H284 | 0.9700 |
C16—H163 | 0.9600 | ||
O2—S1—O1 | 120.06 (17) | C21—N20—C19 | 115.3 (3) |
O2—S1—N8 | 108.00 (16) | N20—C21—C22 | 123.5 (3) |
O1—S1—N8 | 105.63 (16) | N20—C21—H21 | 118.3 |
O2—S1—C1 | 106.56 (18) | C22—C21—H21 | 118.3 |
O1—S1—C1 | 108.22 (17) | C21—C22—C17 | 117.3 (3) |
N8—S1—C1 | 107.88 (14) | C21—C22—Br1 | 120.4 (2) |
C17—S2—C10 | 100.27 (12) | C17—C22—Br1 | 122.3 (2) |
C6—C1—C2 | 119.3 (4) | C19—N23—C24A | 123.2 (3) |
C6—C1—S1 | 120.9 (3) | C19—N23—C28A | 123.1 (3) |
C2—C1—S1 | 119.7 (3) | C24A—N23—C28A | 112.9 (4) |
C3—C2—C1 | 120.1 (3) | C19—N23—C28B | 113.6 (14) |
C3—C2—H2 | 120.0 | C24A—N23—C28B | 114.9 (14) |
C1—C2—H2 | 120.0 | C19—N23—C24B | 115.9 (16) |
C2—C3—C4 | 121.4 (4) | C28A—N23—C24B | 112.5 (17) |
C2—C3—H3 | 119.3 | C28B—N23—C24B | 106 (2) |
C4—C3—H3 | 119.3 | N23—C24A—C25A | 109.0 (4) |
C5—C4—C3 | 117.6 (4) | N23—C24A—H241 | 109.9 |
C5—C4—C7 | 122.1 (4) | C25A—C24A—H241 | 109.9 |
C3—C4—C7 | 120.2 (4) | N23—C24A—H242 | 109.9 |
C4—C5—C6 | 122.0 (4) | C25A—C24A—H242 | 109.9 |
C4—C5—H5 | 119.0 | H241—C24A—H242 | 108.3 |
C6—C5—H5 | 119.0 | O26A—C25A—C24A | 110.4 (5) |
C1—C6—C5 | 119.4 (4) | O26A—C25A—H251 | 109.6 |
C1—C6—H6 | 120.3 | C24A—C25A—H251 | 109.6 |
C5—C6—H6 | 120.3 | O26A—C25A—H252 | 109.6 |
C4—C7—H71 | 109.5 | C24A—C25A—H252 | 109.6 |
C4—C7—H72 | 109.5 | H251—C25A—H252 | 108.1 |
H71—C7—H72 | 109.5 | C27A—O26A—C25A | 110.7 (6) |
C4—C7—H73 | 109.5 | O26A—C27A—C28A | 112.2 (5) |
H71—C7—H73 | 109.5 | O26A—C27A—H271 | 109.2 |
H72—C7—H73 | 109.5 | C28A—C27A—H271 | 109.2 |
C9—N8—S1 | 122.1 (2) | O26A—C27A—H272 | 109.2 |
C9—N8—H8 | 119 (2) | C28A—C27A—H272 | 109.2 |
S1—N8—H8 | 108 (2) | H271—C27A—H272 | 107.9 |
C10—C9—C14 | 117.8 (3) | N23—C28A—C27A | 107.8 (4) |
C10—C9—N8 | 121.8 (3) | N23—C28A—H281 | 110.1 |
C14—C9—N8 | 120.4 (3) | C27A—C28A—H281 | 110.1 |
C11—C10—C9 | 121.2 (3) | N23—C28A—H282 | 110.1 |
C11—C10—S2 | 118.0 (2) | C27A—C28A—H282 | 110.1 |
C9—C10—S2 | 120.8 (2) | H281—C28A—H282 | 108.5 |
C12—C11—C10 | 120.0 (3) | C25B—C24B—N23 | 109 (3) |
C12—C11—H11 | 120.0 | C25B—C24B—H243 | 109.9 |
C10—C11—H11 | 120.0 | N23—C24B—H243 | 109.9 |
O15—C12—C11 | 124.1 (3) | C25B—C24B—H244 | 109.9 |
O15—C12—C13 | 116.3 (3) | N23—C24B—H244 | 109.9 |
C11—C12—C13 | 119.5 (3) | H243—C24B—H244 | 108.3 |
C14—C13—C12 | 120.4 (3) | O26B—C25B—C24B | 119 (5) |
C14—C13—H13 | 119.8 | O26B—C25B—H253 | 107.5 |
C12—C13—H13 | 119.8 | C24B—C25B—H253 | 107.5 |
C13—C14—C9 | 121.2 (3) | O26B—C25B—H254 | 107.5 |
C13—C14—H14 | 119.4 | C24B—C25B—H254 | 107.5 |
C9—C14—H14 | 119.4 | H253—C25B—H254 | 107.0 |
C12—O15—C16 | 117.0 (3) | C25B—O26B—C27B | 114 (5) |
O15—C16—H161 | 109.5 | C28B—C27B—O26B | 104 (3) |
O15—C16—H162 | 109.5 | C28B—C27B—H273 | 111.0 |
H161—C16—H162 | 109.5 | O26B—C27B—H273 | 111.0 |
O15—C16—H163 | 109.5 | C28B—C27B—H274 | 111.0 |
H161—C16—H163 | 109.5 | O26B—C27B—H274 | 111.0 |
H162—C16—H163 | 109.5 | H273—C27B—H274 | 109.0 |
N18—C17—C22 | 121.1 (3) | C27B—C28B—N23 | 111 (3) |
N18—C17—S2 | 119.5 (2) | C27B—C28B—H283 | 109.5 |
C22—C17—S2 | 119.4 (2) | N23—C28B—H283 | 109.5 |
C17—N18—C19 | 117.3 (2) | C27B—C28B—H284 | 109.5 |
N20—C19—N18 | 125.4 (3) | N23—C28B—H284 | 109.5 |
N20—C19—N23 | 117.8 (3) | H283—C28B—H284 | 108.1 |
N18—C19—N23 | 116.8 (3) | ||
O2—S1—C1—C6 | 4.6 (3) | C17—N18—C19—N23 | 179.8 (3) |
O1—S1—C1—C6 | 135.0 (3) | N18—C19—N20—C21 | −1.1 (5) |
N8—S1—C1—C6 | −111.2 (3) | N23—C19—N20—C21 | −179.3 (3) |
O2—S1—C1—C2 | −173.2 (3) | C19—N20—C21—C22 | 0.1 (5) |
O1—S1—C1—C2 | −42.8 (3) | N20—C21—C22—C17 | 0.3 (5) |
N8—S1—C1—C2 | 71.1 (3) | N20—C21—C22—Br1 | 179.6 (3) |
C6—C1—C2—C3 | −0.8 (5) | N18—C17—C22—C21 | 0.1 (4) |
S1—C1—C2—C3 | 177.0 (3) | S2—C17—C22—C21 | −179.9 (2) |
C1—C2—C3—C4 | −1.2 (5) | N18—C17—C22—Br1 | −179.1 (2) |
C2—C3—C4—C5 | 2.1 (6) | S2—C17—C22—Br1 | 0.8 (3) |
C2—C3—C4—C7 | −177.5 (4) | N20—C19—N23—C24A | −7.8 (5) |
C3—C4—C5—C6 | −1.1 (6) | N18—C19—N23—C24A | 173.8 (3) |
C7—C4—C5—C6 | 178.5 (4) | N20—C19—N23—C28A | −177.4 (3) |
C2—C1—C6—C5 | 1.8 (6) | N18—C19—N23—C28A | 4.2 (5) |
S1—C1—C6—C5 | −176.0 (3) | N20—C19—N23—C28B | −154.3 (14) |
C4—C5—C6—C1 | −0.8 (6) | N18—C19—N23—C28B | 27.2 (15) |
O2—S1—N8—C9 | −55.5 (3) | N20—C19—N23—C24B | −31.8 (17) |
O1—S1—N8—C9 | 174.9 (2) | N18—C19—N23—C24B | 149.8 (16) |
C1—S1—N8—C9 | 59.3 (3) | C19—N23—C24A—C25A | −113.5 (5) |
S1—N8—C9—C10 | −120.3 (3) | C28A—N23—C24A—C25A | 57.0 (6) |
S1—N8—C9—C14 | 61.8 (4) | C28B—N23—C24A—C25A | 32.7 (16) |
C14—C9—C10—C11 | −0.3 (4) | C24B—N23—C24A—C25A | −37 (5) |
N8—C9—C10—C11 | −178.3 (3) | N23—C24A—C25A—O26A | −55.1 (7) |
C14—C9—C10—S2 | 177.9 (2) | C24A—C25A—O26A—C27A | 57.5 (8) |
N8—C9—C10—S2 | −0.1 (4) | C25A—O26A—C27A—C28A | −59.4 (8) |
C17—S2—C10—C11 | −70.7 (2) | C19—N23—C28A—C27A | 113.4 (4) |
C17—S2—C10—C9 | 111.1 (2) | C24A—N23—C28A—C27A | −57.2 (6) |
C9—C10—C11—C12 | −2.0 (4) | C28B—N23—C28A—C27A | 43 (4) |
S2—C10—C11—C12 | 179.9 (2) | C24B—N23—C28A—C27A | −33.3 (16) |
C10—C11—C12—O15 | 179.7 (3) | O26A—C27A—C28A—N23 | 58.2 (6) |
C10—C11—C12—C13 | 2.2 (4) | C19—N23—C24B—C25B | −177 (2) |
O15—C12—C13—C14 | −178.0 (3) | C24A—N23—C24B—C25B | 68 (4) |
C11—C12—C13—C14 | −0.2 (5) | C28A—N23—C24B—C25B | −27 (3) |
C12—C13—C14—C9 | −2.0 (5) | C28B—N23—C24B—C25B | −50 (4) |
C10—C9—C14—C13 | 2.3 (4) | N23—C24B—C25B—O26B | 65 (7) |
N8—C9—C14—C13 | −179.7 (3) | C24B—C25B—O26B—C27B | −69 (7) |
C11—C12—O15—C16 | −3.6 (5) | C25B—O26B—C27B—C28B | 60 (7) |
C13—C12—O15—C16 | 174.1 (3) | O26B—C27B—C28B—N23 | −52 (4) |
C10—S2—C17—N18 | −3.3 (3) | C19—N23—C28B—C27B | −178.5 (19) |
C10—S2—C17—C22 | 176.7 (2) | C24A—N23—C28B—C27B | 32 (3) |
C22—C17—N18—C19 | −0.9 (4) | C28A—N23—C28B—C27B | −58 (3) |
S2—C17—N18—C19 | 179.1 (2) | C24B—N23—C28B—C27B | 53 (3) |
C17—N18—C19—N20 | 1.5 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N8—H8···O26Ai | 0.85 (2) | 2.02 (2) | 2.846 (8) | 163 (2) |
N8—H8···O26Bi | 0.85 (2) | 2.06 (6) | 2.895 (5) | 165 (3) |
C21—H21···N20ii | 0.93 | 2.53 | 3.394 (4) | 155 |
C25A—H251···O2iii | 0.97 | 2.59 | 3.377 (6) | 138 |
C27A—H272···O2iii | 0.97 | 2.52 | 3.341 (6) | 143 |
Symmetry codes: (i) x+1, y, z; (ii) −x+1, −y, −z+1; (iii) x−1/2, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C22H23BrN4O4S2 |
Mr | 551.47 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 10.0321 (3), 17.4842 (6), 13.9095 (4) |
β (°) | 91.699 (3) |
V (Å3) | 2438.70 (13) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.89 |
Crystal size (mm) | 0.3 × 0.2 × 0.1 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur Sapphire3 |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) |
Tmin, Tmax | 0.557, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 21500, 4783, 3361 |
Rint | 0.040 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.086, 1.01 |
No. of reflections | 4783 |
No. of parameters | 321 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.53, −0.46 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2010), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N8—H8···O26Ai | 0.85 (2) | 2.02 (2) | 2.846 (8) | 163 (2) |
N8—H8···O26Bi | 0.85 (2) | 2.06 (6) | 2.895 (5) | 165 (3) |
C21—H21···N20ii | 0.93 | 2.53 | 3.394 (4) | 155 |
C25A—H251···O2iii | 0.97 | 2.59 | 3.377 (6) | 138 |
C27A—H272···O2iii | 0.97 | 2.52 | 3.341 (6) | 143 |
Symmetry codes: (i) x+1, y, z; (ii) −x+1, −y, −z+1; (iii) x−1/2, −y+1/2, z−1/2. |
Acknowledgements
RK acknowledges the Department of Science & Technology for the single-crystal X-ray diffractometer sanctioned as a National Facility under project No. SR/S2/CMP-47/2003.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The amide and sulfonamide moieties are the constituents of many biologically significant compounds. Sulfonamide compounds are well known as antimicrobial agents (Gao & Pederson, 2005). In the present work, the crystal structure of N-[2-(5-bromo-2-morpholin-4-yl-pyrimidin-4-ylsulfanyl)-4-methoxy-phenyl]-4- methyl-benzenesulfonamide has been determined.
Bond lengths and angles in the title compound (Fig. 1) have normal values (Allen et al., 1987) and are comparable with the similar crystal structures (Rodrigues et al., 2011; Akkurt et al., 2011). The morpholine ring is disordered over two positions with the occupancy ratio of 0.853 (6):0.147 (6) and adopts chair conformation (asymmetry parameters:ΔCs(C24A—C27A) = 1.30; ΔC2(C24A—C25A) = 1.59; ΔCs(C25B—C28B) = 2.37; ΔC2(C25B—O26B) = 3.65 (Duax & Norton, 1975). The two benzene rings are tilted relative to each other by 68.9 (1)°. The dihedral angle formed by the pyrimidine ring with two benzene rings (C9—C14/C1—C6) are 69.7 (1) and 2.2 (1)°, respectively. In the crystal, molecules are connected via N—H···O, C—H···N and C—H···O hydrogen bonds.