metal-organic compounds
Aquachloridobis[2-(1,3-thiazol-4-yl-κN)-1H-benzimidazole-κN3]nickel(II) nitrate
aDepartment of Chemistry and Chemical Engineering, Guangxi University for Nationalities, Nanning 530006, People's Republic of China
*Correspondence e-mail: 6628yxh@163.com
In the title compound, [NiCl(C10H7N3S)2(H2O)]NO3, the NiII ion is coordinated by four N atoms from two chelating 2-(1,3-thiazol-4-yl)-1H-benzimidazole ligands, one Cl atom and one water molecule in a distorted octahedral geometry. In the crystal, O—H⋯O, N—H⋯O and N—H⋯Cl hydrogen bonds link the complex cations and nitrate anions into a three-dimensional network. π–π interactions between the thiazole and imidazole rings and between the thiazole and benzene rings are observed [centroid–centroid distances = 3.592 (3) and 3.735 (3) Å].
Related literature
For background to the synthesis and properties of benzimidazole derivatives, see: Agh-Atabay et al. (2003); Devereux et al. (2004); Inoue et al. (2002). For a related structure, see: Mothilal et al. (2004).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 1999); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).
Supporting information
https://doi.org/10.1107/S1600536812029728/hy2553sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812029728/hy2553Isup2.hkl
A solution of TBZ (0.201 g, 1 mmol) in 3 ml DMF was added dropwise with stirring at room temperature to a solution of Ni(NO3)2.6H2O (0.290 g, 1 mmol) and NiCl2.6H2O (0.237 g, 1 mmol) in a mixture of 10 ml water and 5 ml ethanol. Then an aqueous solution of sodium hydroxide was added dropwise with stirring to adjust the pH value of the solution being 6. The resulting mixture was sealed in a 23 ml Teflon-lined stainless reactor, kept under autogenous pressure at 403 K for 72 h, and then slowly cooled to room temperature at a rate of 5 K per hour. Dark-green block crystals suitable for X-ray diffraction were isolated, washed with ethanol and dried in air (yield: 65% based on Ni).
H atoms on C and N atoms were positioned geometrically and refined as riding atoms, with C—H = 0.93 and N—H = 0.86 Å and with Uiso(H) = 1.2Ueq(C, N). The water H atoms were located from a difference Fourier map and refined as riding with Uiso(H) = 0.079 Å2.
Thiabendazole (TBZ) aroused considerable interest in biology and medicine due to its antiproliferative activities. It is an antimicrobial drug belonging to the benzimidazole derivatives and exhibits wide applications in human and veterinary medicine (Agh-Atabay et al., 2003; Devereux et al., 2004; Inoue et al., 2002). As part of our studies of the synthesis and characterization of these compounds, we report here the synthesis and
of the title compound (Fig. 1).In the crystal, intermolecular O—H···O, N—H···O and N—H···Cl hydrogen bonds link the complex cations and nitrate anions into a three-dimensional network (Table 1, Fig. 2) (Mothilal et al., 2004). π–π interactions between the thiazole and imidazole rings and between the thiazole and benzene rings are observed [centroid–centroid distances = 3.592 (3) and 3.735 (3) Å]. In the complex cation, the two ligand planes are nearly perpendicular to each other, with a dihedral angle of 89.14 (7)°.
For background to the synthesis and properties of benzimidazole derivatives, see: Agh-Atabay et al. (2003); Devereux et al. (2004); Inoue et al. (2002). For a related structure, see: Mothilal et al. (2004).
Data collection: SMART (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 1999); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The Molecular structure of the title compound. Displacement ellipsoids are drawn at the 50% probability level. H atoms have been omitted for clarity. | |
Fig. 2. Crystal packing of the title compound. Dashed lines denote hydrogen bonds. |
[NiCl(C10H7N3S)2(H2O)]NO3 | F(000) = 1176 |
Mr = 576.68 | Dx = 1.662 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 2584 reflections |
a = 16.091 (5) Å | θ = 2.3–26.6° |
b = 11.189 (3) Å | µ = 1.18 mm−1 |
c = 13.931 (3) Å | T = 296 K |
β = 113.275 (3)° | Block, green |
V = 2304.1 (11) Å3 | 0.26 × 0.25 × 0.24 mm |
Z = 4 |
Bruker SMART APEX CCD diffractometer | 4050 independent reflections |
Radiation source: fine-focus sealed tube | 3129 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.072 |
φ and ω scans | θmax = 25.0°, θmin = 1.4° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −18→19 |
Tmin = 0.748, Tmax = 0.764 | k = −13→13 |
11654 measured reflections | l = −14→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.054 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.174 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.083P)2 + 1.4424P] where P = (Fo2 + 2Fc2)/3 |
4050 reflections | (Δ/σ)max = 0.045 |
316 parameters | Δρmax = 0.80 e Å−3 |
0 restraints | Δρmin = −0.53 e Å−3 |
[NiCl(C10H7N3S)2(H2O)]NO3 | V = 2304.1 (11) Å3 |
Mr = 576.68 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 16.091 (5) Å | µ = 1.18 mm−1 |
b = 11.189 (3) Å | T = 296 K |
c = 13.931 (3) Å | 0.26 × 0.25 × 0.24 mm |
β = 113.275 (3)° |
Bruker SMART APEX CCD diffractometer | 4050 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 3129 reflections with I > 2σ(I) |
Tmin = 0.748, Tmax = 0.764 | Rint = 0.072 |
11654 measured reflections |
R[F2 > 2σ(F2)] = 0.054 | 0 restraints |
wR(F2) = 0.174 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.80 e Å−3 |
4050 reflections | Δρmin = −0.53 e Å−3 |
316 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Ni1 | 0.26114 (3) | 0.47368 (5) | 0.32612 (4) | 0.0352 (2) | |
Cl1 | 0.31740 (8) | 0.27662 (10) | 0.40665 (10) | 0.0490 (4) | |
S1 | 0.36620 (9) | 0.71229 (11) | 0.62788 (10) | 0.0507 (4) | |
S2 | 0.13043 (9) | 0.27528 (12) | 0.00588 (11) | 0.0552 (4) | |
O1 | 0.13949 (19) | 0.4517 (3) | 0.3478 (3) | 0.0412 (7) | |
O3 | 1.0666 (2) | 0.6635 (3) | 0.3784 (3) | 0.0606 (10) | |
O4 | 1.0018 (2) | 0.8339 (3) | 0.3421 (3) | 0.0693 (11) | |
O2 | 0.9808 (3) | 0.7045 (5) | 0.2204 (3) | 0.0964 (18) | |
N3 | 0.2001 (2) | 0.3971 (3) | 0.1739 (3) | 0.0344 (8) | |
N5 | 0.3884 (2) | 0.5240 (3) | 0.3241 (3) | 0.0313 (8) | |
N6 | 0.3205 (2) | 0.5777 (3) | 0.4687 (3) | 0.0324 (8) | |
N2 | 0.2024 (2) | 0.6272 (3) | 0.2292 (3) | 0.0343 (8) | |
N7 | 0.5158 (2) | 0.6289 (3) | 0.3975 (3) | 0.0370 (9) | |
H7 | 0.5562 | 0.6742 | 0.4414 | 0.044* | |
N4 | 0.1133 (2) | 0.6929 (3) | 0.0713 (3) | 0.0430 (9) | |
H4 | 0.0801 | 0.6916 | 0.0054 | 0.052* | |
N1 | 1.0157 (2) | 0.7334 (4) | 0.3117 (3) | 0.0447 (10) | |
C8 | 0.4375 (3) | 0.5129 (4) | 0.2623 (3) | 0.0343 (10) | |
C15 | 0.1532 (3) | 0.4763 (4) | 0.0953 (4) | 0.0368 (10) | |
C20 | 0.5192 (3) | 0.5792 (4) | 0.3096 (4) | 0.0371 (10) | |
C7 | 0.1553 (3) | 0.5995 (4) | 0.1300 (3) | 0.0339 (9) | |
C19 | 0.4372 (2) | 0.5941 (3) | 0.4029 (3) | 0.0321 (9) | |
C17 | 0.4038 (2) | 0.6273 (3) | 0.4827 (3) | 0.0327 (9) | |
C6 | 0.1899 (3) | 0.7514 (4) | 0.2356 (4) | 0.0388 (10) | |
C13 | 0.1927 (3) | 0.2884 (4) | 0.1364 (4) | 0.0419 (11) | |
H13 | 0.2196 | 0.2229 | 0.1783 | 0.050* | |
C5 | 0.1327 (3) | 0.7920 (4) | 0.1353 (4) | 0.0441 (11) | |
C18 | 0.4377 (3) | 0.7027 (4) | 0.5649 (4) | 0.0421 (11) | |
H18 | 0.4923 | 0.7435 | 0.5842 | 0.051* | |
C11 | 0.5629 (4) | 0.5228 (5) | 0.1731 (5) | 0.0571 (14) | |
H11 | 0.6040 | 0.5248 | 0.1412 | 0.069* | |
C1 | 0.2222 (3) | 0.8290 (4) | 0.3202 (4) | 0.0495 (12) | |
H1 | 0.2602 | 0.8024 | 0.3862 | 0.059* | |
C12 | 0.5820 (3) | 0.5849 (5) | 0.2636 (5) | 0.0540 (14) | |
H12 | 0.6349 | 0.6294 | 0.2935 | 0.065* | |
C14 | 0.1106 (3) | 0.4261 (5) | −0.0009 (4) | 0.0467 (12) | |
H14 | 0.0759 | 0.4676 | −0.0613 | 0.056* | |
C10 | 0.4830 (4) | 0.4559 (5) | 0.1265 (4) | 0.0507 (12) | |
H10 | 0.4723 | 0.4144 | 0.0649 | 0.061* | |
C9 | 0.4209 (3) | 0.4511 (4) | 0.1705 (4) | 0.0443 (11) | |
H9 | 0.3681 | 0.4069 | 0.1392 | 0.053* | |
C16 | 0.2942 (3) | 0.6140 (4) | 0.5385 (4) | 0.0412 (11) | |
H16 | 0.2400 | 0.5892 | 0.5412 | 0.049* | |
C4 | 0.1057 (4) | 0.9106 (5) | 0.1180 (5) | 0.0562 (14) | |
H4A | 0.0679 | 0.9375 | 0.0520 | 0.067* | |
C2 | 0.1958 (4) | 0.9471 (4) | 0.3023 (5) | 0.0612 (15) | |
H2 | 0.2169 | 1.0019 | 0.3569 | 0.073* | |
C3 | 0.1367 (4) | 0.9856 (4) | 0.2012 (6) | 0.0661 (18) | |
H3 | 0.1186 | 1.0652 | 0.1916 | 0.079* | |
H1A | 0.1016 | 0.5069 | 0.3358 | 0.079* | |
H1B | 0.1000 | 0.4040 | 0.3241 | 0.079* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ni1 | 0.0293 (3) | 0.0361 (3) | 0.0344 (4) | −0.0022 (2) | 0.0065 (3) | −0.0048 (2) |
Cl1 | 0.0429 (6) | 0.0411 (6) | 0.0506 (8) | 0.0038 (5) | 0.0053 (5) | 0.0024 (5) |
S1 | 0.0636 (8) | 0.0451 (6) | 0.0402 (8) | −0.0015 (5) | 0.0170 (6) | −0.0142 (5) |
S2 | 0.0516 (7) | 0.0592 (8) | 0.0476 (8) | −0.0047 (6) | 0.0119 (6) | −0.0238 (6) |
O1 | 0.0344 (15) | 0.0363 (15) | 0.051 (2) | −0.0037 (12) | 0.0148 (14) | −0.0003 (14) |
O3 | 0.072 (2) | 0.054 (2) | 0.046 (2) | 0.0172 (18) | 0.0134 (19) | 0.0004 (17) |
O4 | 0.059 (2) | 0.057 (2) | 0.093 (3) | 0.0218 (18) | 0.032 (2) | 0.011 (2) |
O2 | 0.090 (3) | 0.159 (5) | 0.025 (2) | −0.052 (3) | 0.006 (2) | −0.010 (2) |
N3 | 0.0294 (16) | 0.0339 (17) | 0.034 (2) | −0.0017 (14) | 0.0065 (15) | −0.0072 (15) |
N5 | 0.0255 (16) | 0.0344 (17) | 0.029 (2) | −0.0029 (13) | 0.0058 (15) | −0.0020 (15) |
N6 | 0.0306 (17) | 0.0380 (18) | 0.025 (2) | 0.0000 (14) | 0.0077 (15) | −0.0059 (15) |
N2 | 0.0346 (17) | 0.0303 (17) | 0.035 (2) | −0.0006 (14) | 0.0104 (16) | −0.0017 (15) |
N7 | 0.0291 (16) | 0.0394 (18) | 0.036 (2) | −0.0067 (14) | 0.0055 (16) | 0.0033 (16) |
N4 | 0.042 (2) | 0.045 (2) | 0.036 (2) | 0.0034 (17) | 0.0087 (17) | 0.0068 (18) |
N1 | 0.0357 (19) | 0.061 (3) | 0.038 (2) | −0.0123 (18) | 0.0146 (18) | 0.001 (2) |
C8 | 0.032 (2) | 0.035 (2) | 0.033 (2) | 0.0016 (17) | 0.0102 (19) | 0.0018 (18) |
C15 | 0.032 (2) | 0.045 (2) | 0.032 (3) | −0.0053 (17) | 0.0113 (19) | −0.0058 (19) |
C20 | 0.034 (2) | 0.034 (2) | 0.044 (3) | 0.0039 (17) | 0.0153 (19) | 0.010 (2) |
C7 | 0.0296 (19) | 0.040 (2) | 0.033 (2) | 0.0007 (17) | 0.0126 (18) | 0.0016 (18) |
C19 | 0.0265 (18) | 0.033 (2) | 0.033 (2) | 0.0024 (16) | 0.0076 (18) | 0.0031 (18) |
C17 | 0.0296 (19) | 0.0275 (18) | 0.032 (2) | −0.0016 (16) | 0.0032 (17) | 0.0002 (17) |
C6 | 0.033 (2) | 0.030 (2) | 0.054 (3) | −0.0005 (17) | 0.017 (2) | 0.004 (2) |
C13 | 0.031 (2) | 0.044 (2) | 0.046 (3) | −0.0004 (18) | 0.010 (2) | −0.009 (2) |
C5 | 0.039 (2) | 0.045 (3) | 0.054 (3) | 0.0063 (19) | 0.024 (2) | 0.018 (2) |
C18 | 0.042 (2) | 0.037 (2) | 0.040 (3) | −0.0067 (18) | 0.007 (2) | −0.0074 (19) |
C11 | 0.069 (3) | 0.057 (3) | 0.062 (4) | 0.013 (3) | 0.043 (3) | 0.017 (3) |
C1 | 0.048 (3) | 0.035 (2) | 0.065 (3) | 0.001 (2) | 0.021 (2) | −0.003 (2) |
C12 | 0.040 (2) | 0.053 (3) | 0.071 (4) | 0.003 (2) | 0.024 (3) | 0.023 (3) |
C14 | 0.045 (2) | 0.057 (3) | 0.033 (3) | −0.002 (2) | 0.010 (2) | 0.001 (2) |
C10 | 0.064 (3) | 0.055 (3) | 0.040 (3) | 0.004 (2) | 0.028 (3) | 0.006 (2) |
C9 | 0.046 (3) | 0.043 (2) | 0.043 (3) | 0.001 (2) | 0.018 (2) | −0.001 (2) |
C16 | 0.036 (2) | 0.046 (2) | 0.038 (3) | −0.0030 (19) | 0.012 (2) | −0.004 (2) |
C4 | 0.060 (3) | 0.045 (3) | 0.071 (4) | 0.016 (2) | 0.035 (3) | 0.022 (3) |
C2 | 0.069 (3) | 0.038 (2) | 0.092 (5) | −0.002 (2) | 0.048 (3) | −0.005 (3) |
C3 | 0.067 (3) | 0.034 (2) | 0.116 (6) | 0.011 (2) | 0.057 (4) | 0.013 (3) |
Ni1—O1 | 2.109 (3) | C8—C9 | 1.383 (6) |
Ni1—N3 | 2.133 (3) | C8—C20 | 1.424 (6) |
Ni1—N5 | 2.134 (3) | C15—C14 | 1.361 (6) |
Ni1—N2 | 2.159 (3) | C15—C7 | 1.456 (6) |
Ni1—N6 | 2.171 (3) | C20—C12 | 1.396 (7) |
Ni1—Cl1 | 2.4772 (13) | C19—C17 | 1.461 (6) |
S1—C18 | 1.704 (5) | C17—C18 | 1.351 (6) |
S1—C16 | 1.721 (4) | C6—C1 | 1.389 (7) |
S2—C13 | 1.700 (5) | C6—C5 | 1.410 (6) |
S2—C14 | 1.713 (5) | C13—H13 | 0.9300 |
O1—H1A | 0.8372 | C5—C4 | 1.387 (7) |
O1—H1B | 0.7947 | C18—H18 | 0.9300 |
O3—N1 | 1.244 (5) | C11—C12 | 1.364 (8) |
O4—N1 | 1.252 (5) | C11—C10 | 1.406 (8) |
O2—N1 | 1.214 (5) | C11—H11 | 0.9300 |
N3—C13 | 1.310 (5) | C1—C2 | 1.381 (7) |
N3—C15 | 1.380 (5) | C1—H1 | 0.9300 |
N5—C19 | 1.326 (5) | C12—H12 | 0.9300 |
N5—C8 | 1.386 (6) | C14—H14 | 0.9300 |
N6—C16 | 1.271 (6) | C10—C9 | 1.364 (7) |
N6—C17 | 1.391 (5) | C10—H10 | 0.9300 |
N2—C7 | 1.324 (5) | C9—H9 | 0.9300 |
N2—C6 | 1.412 (5) | C16—H16 | 0.9300 |
N7—C19 | 1.354 (5) | C4—C3 | 1.356 (8) |
N7—C20 | 1.367 (6) | C4—H4A | 0.9300 |
N7—H7 | 0.8600 | C2—C3 | 1.420 (8) |
N4—C7 | 1.335 (5) | C2—H2 | 0.9300 |
N4—C5 | 1.379 (6) | C3—H3 | 0.9300 |
N4—H4 | 0.8600 | ||
O1—Ni1—N3 | 90.37 (13) | N2—C7—C15 | 119.8 (4) |
O1—Ni1—N5 | 169.10 (12) | N4—C7—C15 | 126.7 (4) |
N3—Ni1—N5 | 99.19 (13) | N5—C19—N7 | 112.6 (4) |
O1—Ni1—N2 | 88.88 (12) | N5—C19—C17 | 120.3 (3) |
N3—Ni1—N2 | 77.42 (13) | N7—C19—C17 | 127.0 (4) |
N5—Ni1—N2 | 88.12 (13) | C18—C17—N6 | 114.4 (4) |
O1—Ni1—N6 | 91.69 (12) | C18—C17—C19 | 131.0 (4) |
N3—Ni1—N6 | 171.22 (14) | N6—C17—C19 | 114.5 (3) |
N5—Ni1—N6 | 78.08 (13) | C1—C6—C5 | 121.2 (4) |
N2—Ni1—N6 | 94.09 (13) | C1—C6—N2 | 130.8 (4) |
O1—Ni1—Cl1 | 91.44 (9) | C5—C6—N2 | 107.9 (4) |
N3—Ni1—Cl1 | 91.99 (10) | N3—C13—S2 | 115.4 (4) |
N5—Ni1—Cl1 | 93.43 (9) | N3—C13—H13 | 122.3 |
N2—Ni1—Cl1 | 169.41 (10) | S2—C13—H13 | 122.3 |
N6—Ni1—Cl1 | 96.48 (10) | N4—C5—C4 | 132.9 (5) |
C18—S1—C16 | 89.2 (2) | N4—C5—C6 | 105.9 (4) |
C13—S2—C14 | 89.5 (2) | C4—C5—C6 | 121.1 (5) |
Ni1—O1—H1A | 122.0 | C17—C18—S1 | 110.3 (3) |
Ni1—O1—H1B | 130.8 | C17—C18—H18 | 124.9 |
H1A—O1—H1B | 90.7 | S1—C18—H18 | 124.9 |
C13—N3—C15 | 110.2 (4) | C12—C11—C10 | 121.9 (5) |
C13—N3—Ni1 | 134.7 (3) | C12—C11—H11 | 119.0 |
C15—N3—Ni1 | 115.1 (3) | C10—C11—H11 | 119.0 |
C19—N5—C8 | 105.7 (3) | C2—C1—C6 | 117.4 (5) |
C19—N5—Ni1 | 113.7 (3) | C2—C1—H1 | 121.3 |
C8—N5—Ni1 | 140.4 (3) | C6—C1—H1 | 121.3 |
C16—N6—C17 | 111.0 (4) | C11—C12—C20 | 117.5 (5) |
C16—N6—Ni1 | 135.5 (3) | C11—C12—H12 | 121.3 |
C17—N6—Ni1 | 113.2 (3) | C20—C12—H12 | 121.3 |
C7—N2—C6 | 105.0 (3) | C15—C14—S2 | 110.0 (4) |
C7—N2—Ni1 | 113.3 (3) | C15—C14—H14 | 125.0 |
C6—N2—Ni1 | 141.4 (3) | S2—C14—H14 | 125.0 |
C19—N7—C20 | 107.6 (3) | C9—C10—C11 | 120.8 (5) |
C19—N7—H7 | 126.2 | C9—C10—H10 | 119.6 |
C20—N7—H7 | 126.2 | C11—C10—H10 | 119.6 |
C7—N4—C5 | 107.6 (4) | C10—C9—C8 | 119.2 (5) |
C7—N4—H4 | 126.2 | C10—C9—H9 | 120.4 |
C5—N4—H4 | 126.2 | C8—C9—H9 | 120.4 |
O2—N1—O3 | 120.7 (5) | N6—C16—S1 | 115.2 (3) |
O2—N1—O4 | 121.6 (5) | N6—C16—H16 | 122.4 |
O3—N1—O4 | 117.7 (4) | S1—C16—H16 | 122.4 |
C9—C8—N5 | 132.1 (4) | C3—C4—C5 | 117.4 (5) |
C9—C8—C20 | 119.5 (4) | C3—C4—H4A | 121.3 |
N5—C8—C20 | 108.4 (4) | C5—C4—H4A | 121.3 |
C14—C15—N3 | 114.9 (4) | C1—C2—C3 | 120.5 (5) |
C14—C15—C7 | 130.8 (4) | C1—C2—H2 | 119.8 |
N3—C15—C7 | 114.3 (4) | C3—C2—H2 | 119.8 |
N7—C20—C12 | 133.3 (4) | C4—C3—C2 | 122.4 (5) |
N7—C20—C8 | 105.7 (4) | C4—C3—H3 | 118.8 |
C12—C20—C8 | 121.0 (5) | C2—C3—H3 | 118.8 |
N2—C7—N4 | 113.5 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···O3i | 0.84 | 2.00 | 2.751 (5) | 149 |
O1—H1B···O2ii | 0.79 | 2.53 | 3.293 (6) | 160 |
O1—H1B···O4ii | 0.79 | 2.38 | 3.025 (5) | 139 |
N4—H4···O3iii | 0.86 | 2.35 | 2.962 (5) | 129 |
N4—H4···O4iii | 0.86 | 2.14 | 2.996 (5) | 173 |
N7—H7···Cl1iv | 0.86 | 2.35 | 3.159 (4) | 157 |
Symmetry codes: (i) x−1, y, z; (ii) −x+1, y−1/2, −z+1/2; (iii) x−1, −y+3/2, z−1/2; (iv) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [NiCl(C10H7N3S)2(H2O)]NO3 |
Mr | 576.68 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 296 |
a, b, c (Å) | 16.091 (5), 11.189 (3), 13.931 (3) |
β (°) | 113.275 (3) |
V (Å3) | 2304.1 (11) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.18 |
Crystal size (mm) | 0.26 × 0.25 × 0.24 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.748, 0.764 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11654, 4050, 3129 |
Rint | 0.072 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.054, 0.174, 1.07 |
No. of reflections | 4050 |
No. of parameters | 316 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.80, −0.53 |
Computer programs: SMART (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), DIAMOND (Brandenburg, 1999), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···O3i | 0.84 | 2.00 | 2.751 (5) | 149 |
O1—H1B···O2ii | 0.79 | 2.53 | 3.293 (6) | 160 |
O1—H1B···O4ii | 0.79 | 2.38 | 3.025 (5) | 139 |
N4—H4···O3iii | 0.86 | 2.35 | 2.962 (5) | 129 |
N4—H4···O4iii | 0.86 | 2.14 | 2.996 (5) | 173 |
N7—H7···Cl1iv | 0.86 | 2.35 | 3.159 (4) | 157 |
Symmetry codes: (i) x−1, y, z; (ii) −x+1, y−1/2, −z+1/2; (iii) x−1, −y+3/2, z−1/2; (iv) −x+1, −y+1, −z+1. |
Acknowledgements
This work was supported by the Key Scientific Research Projects of Guangxi University for Nationalities (2009MDZD42) and the Innovation Project of Guangxi University for Nationalities (gxun-chx2011092).
References
Agh-Atabay, N. M., Dulger, B. & Gucin, F. (2003). Eur. J. Med. Chem. 38, 875–881. Web of Science CrossRef PubMed CAS Google Scholar
Brandenburg, K. (1999). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
Bruker (2007). SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Devereux, M., McCann, M., Shea, D. O., Kelly, R., Egan, D., Deegan, C., Kavanagh, K., McKee, V. & Finn, G. (2004). J. Inorg. Biochem. 98, 1023–1031. CSD CrossRef PubMed CAS Google Scholar
Inoue, Y., Hoshino, M., Takahashi, H., Noguchi, T., Murata, T., Kanzaki, Y., Hamashima, H. & Sasatru, M. (2002). J. Inorg. Biochem. 92, 37–42. Web of Science CrossRef PubMed CAS Google Scholar
Mothilal, K. K., Karunakaran, C., Rajendran, A. & Murugesan, R. (2004). J. Inorg. Biochem. 98, 322–332. Web of Science CSD CrossRef PubMed CAS Google Scholar
Sheldrick, G. M. (1996). SADABS. University of Göttingen, Germany. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Thiabendazole (TBZ) aroused considerable interest in biology and medicine due to its antiproliferative activities. It is an antimicrobial drug belonging to the benzimidazole derivatives and exhibits wide applications in human and veterinary medicine (Agh-Atabay et al., 2003; Devereux et al., 2004; Inoue et al., 2002). As part of our studies of the synthesis and characterization of these compounds, we report here the synthesis and crystal structure of the title compound (Fig. 1).
In the crystal, intermolecular O—H···O, N—H···O and N—H···Cl hydrogen bonds link the complex cations and nitrate anions into a three-dimensional network (Table 1, Fig. 2) (Mothilal et al., 2004). π–π interactions between the thiazole and imidazole rings and between the thiazole and benzene rings are observed [centroid–centroid distances = 3.592 (3) and 3.735 (3) Å]. In the complex cation, the two ligand planes are nearly perpendicular to each other, with a dihedral angle of 89.14 (7)°.