organic compounds
Andirobin from X. moluccensis
aDepartment of Chemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand, bDepartment of Chemistry, Faculty of Science, Mahanakorn University of Technology, Bangkok 10530, Thailand, cResearch Centre of Bioorganic Chemistry, Department of Chemistry, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand, and dCenter for Petroleum, Petrochemicals, and Advanced Materials, Chulalongkorn University, Bangkok 10330, Thailand
*Correspondence e-mail: nongnuj.j@chula.ac.th
The title compound (systematic name: methyl 2-{(1R,2R)-2-[(1aS,4S,4aS,8aS)-4-(furan-3-yl)-4a-methyl-8-methylene-2-oxooctahydrooxireno[2,3-d]isochromen-7-yl]-2,6,6-trimethyl-5-oxocyclohex-3-en-1-yl}acetate), C27H32O7, was isolated from X. moluccensis seeds from Thailand. The conformations of the six-membered rings are distorted half-chair, chair and half-chair for the isolated cyclohexane, fused cyclohexane and lactone rings, respectively. In addition, the lactone ring bears in an equatorial orientation an essentially planar furan ring (r.m.s. deviation = 0.004 Å), which forms an angle of 63.87 (13)° with the mean plane defined by the ten atoms of the two fused six-membered rings (r.m.s. deviation = 0.213 Å). The was fixed on the basis of literature data.
Related literature
For general background to limonoids and their activities, see: Alvi et al. (1991); Yu et al. (2007); Li et al. (2009). For related structures, see: Chanin et al. (2010); Pudhom et al. (2009, 2010). For the bioactivity of limonoids, see: Koul et al. (2004); Endo et al. (2002); Nakagawa et al. (2001); Ravangpai et al. (2011). For puckering parameters, see: Cremer & Pople (1975).
Experimental
Crystal data
|
Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997; software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
https://doi.org/10.1107/S1600536812027705/lr2061sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812027705/lr2061Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536812027705/lr2061Isup3.cml
General Experiment Procedures. Melting point was measured using a Fisher-Johns melting point apparatus. NMR spectra were recorded with a Bruker AV400 (1H, 400 MHz; 13C, 100 MHz) spectrometer using tetramethylsilane as an internal standard. Mass spectra were obtained from a Bruker micrOTOF mass spectrometer.
Plant Material. Fruits of X. moluccensis were collected from Surat Thani province, Thailand, in January 2010. Plant materials were identified by Royal Forest Department, Bangkok, Thailand.
Extraction and Isolation of Andirobin (1). Air-dried powdered seeds of X. moluccensis (2 kg) were extracted with MeOH (5L x 2, each for two days) at room temperature. Extracts were pooled and the solvent were removed under reduced pressure. The combined MeOH extract was then suspended in water and partitioned with EtOAc. The EtOAc crude extract obtained (30 g) was chromatographed on a sililca gel column eluted with a gradient of acetone-hexane (from 1:9 to 1:0) to yield 12 fractions. Fraction 2 was further purified by silica gel
eluting with a 1:9 mixture of acetone-hexane and recrystallized from MeOH to afford the title compound (1, 25.0 mg).Andirobin (1): colorless crystals; 1H NMR (400 MHz, CDCl3) d 7.34 (1H, s, H-23), 7.33 (1H, s, H-21), 7.07 (1H, d, J = 10.4 Hz, H-1), 6.27 (1H, s, H-22), 5.99 (1H, d, J = 10.4 Hz, H-2), 5.41 (1H, s, H-17), 5.30 (1H, s, H-30a), 5.20 (1H, s, H-30b), 3.97 (1H, s, H-15), 3.64 (3H, s, 7-COOCH3), 2.62 (1H, dd, J = 3.2, 6.8 Hz, H-5), 2.44 (1H, dd, J = 7.2, 17.2 Hz, H-6a), 2.39 (1H, d, J = 6.8 Hz, H-9), 2.28 (1H, dd, J = 3.2, 17.2 Hz, H-6 b), 1.90 (1H, m, H-11a), 1.73 (1H, m, H-11b), 1.60 (1H, m, H-12a), 1.16 (1H, m, H-12b), 1.04 (3H, s, 28-CH3), 1.01 (3H, s, 29-CH3), 0.90 (3H, s, 19-CH3), 0.87 (3H, s, 18-CH3);
13C NMR (100 MHz, CDCl3) d 203.7 (C=O, C-3), 174.3 (C=O, C-7), 166.7 (C=O, C-16), 153.5 (CH, C-1), 143.2 (CH, C-23), 140.9 (CH, C-21), 138.9 (C, C-8), 125.7 (CH, C-2), 122.3 (CH2, C-30), 119.8 (C, C-20), 109.7 (CH, C-22), 77.4 (CH, C-15), 67.8 (C, C-14), 55.5 (CH, C-17), 52.1 (CH3, 7-COOCH3), 48.8 (CH, C-9), 46.1 (C, C-4), 43.1 (C, C-10), 42.8 (CH, C-5), 38.6 (C, C-13), 31.5 (CH2, C-6), 29.5 (CH2, C-12), 22.7 (CH3, C-29), 22.5 (CH3, C-28), 21.3 (CH2, C-11), 20.2 (CH3, C-19), 14.6 (CH3, C-18).
All H atoms were geometrically positioned and treated as riding atoms with distances C—H = 0.96 Å (CH3), 0.97 Å (CH2), 0.93 Å (CH), and Uiso(H) = 1.20 Ueq(C) for methylene and aromatic, 1.50 Ueq(C) for methyl. The
could not be determined from the X-ray analysis, but it was known from earlier work on related compounds (e.g. Alvi et al., 1991, Yu et al., 2007 and Li et al., 2009). 2388 Friedel pairs were therefore merged before the final refinement.The maximum residual density ( 0.68 eÅ3) is larger than normally expected. However, the nearest atom to the corresponding minimum is O5 at 2.74 Å, which seems to indicate that de residual density can be associated to unmodeled disordered solvent molecules.
Limonoids are triterpene derivatives from a precursor with a 4,4,8-trimethyl-17-furanylsteroid skeleton. Limonoid examination of the Meliaceae family is of growing interest due to a range of biological activities, such as insect antifeedants and growth regulators, antibacterial, antifungal, antimalarial, anticancer, antiviral and anti-inflammatory activities (Koul et al., 2004; Endo et al., 2002; Nakagawa et al., 2001; Ravangpai, et al., 2011). The genus Xylocarpus (Meliaceae) has proved to be a rich source of an array of structurally diverse limonoids, including gedunin, andirobin, mexicanolide and phragmalin type limonoids, with a broad range of biological activities (Alvi et al., 1991; Yu et al., 2007; Li et al., 2009). We have recently reported the isolation and identification a number of limonoids from three Thai mangroves in this genus, X. granatum, X. moluccensis and X. rumphii (Chanin et al., 2010; Pudhom et al., 2009; Pudhom et al., 2010). Herein, we report the complete assignments of NMR and the
of the title compound isolated from X. moluccensis seeds.In the molecular structure, the conformation of the six-membered rings are distorted half-chair, chair and half-chair for the isolated cyclohenane, fused cyclohexane and lactone ring respectively (Cremer & Pople, 1975). In addition, the lactone ring bears in equatorial orientation a planar furan ring (r.m.s. deviation= 0.004 Å) which form an angle of 63.87 (13)o with the mean square plane (r.m.s. deviation Å) defined by the ten atoms of the two fused six-membered rings.
For general background to limonoids and their activities, see: Alvi et al. (1991); Yu et al. (2007); Li et al. (2009). For related structures, see: Chanin et al. (2010); Pudhom et al. (2009, 2010). For the bioactivity of limonoids, see: Koul et al. (2004); Endo et al. (2002); Nakagawa et al. (2001); Ravangpai, et al. (2011). For puckering parameters, see:Cremer & Pople (1975).
Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997; software used to prepare material for publication: publCIF (Westrip, 2010).Fig. 1. The molecular structure of the title compound with ellipsoids drawn at the 30% probability level. |
C27H32O7 | Z = 4 |
Mr = 468.53 | F(000) = 1000 |
Orthorhombic, P212121 | Dx = 1.278 Mg m−3 |
Hall symbol: P 2ac 2ab | Mo Kα radiation, λ = 0.71073 Å |
a = 8.8125 (5) Å | µ = 0.09 mm−1 |
b = 12.5907 (7) Å | T = 296 K |
c = 21.9393 (11) Å | Prism, colourless |
V = 2434.3 (2) Å3 | 0.48 × 0.40 × 0.36 mm |
Bruker SMART APEXII CCD area-detector diffractometer | 2725 reflections with I > 2σ(I) |
Radiation source: Mo Kα | Rint = 0.020 |
Graphite monochromator | θmax = 27.5°, θmin = 1.9° |
φ and ω scans | h = −11→7 |
13719 measured reflections | k = −15→15 |
3132 independent reflections | l = −28→19 |
Refinement on F2 | 0 restraints |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.041 | w = 1/[σ2(Fo2) + (0.0714P)2 + 0.1995P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.117 | (Δ/σ)max = 0.014 |
S = 1.11 | Δρmax = 0.68 e Å−3 |
5520 reflections | Δρmin = −0.18 e Å−3 |
312 parameters |
C27H32O7 | V = 2434.3 (2) Å3 |
Mr = 468.53 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 8.8125 (5) Å | µ = 0.09 mm−1 |
b = 12.5907 (7) Å | T = 296 K |
c = 21.9393 (11) Å | 0.48 × 0.40 × 0.36 mm |
Bruker SMART APEXII CCD area-detector diffractometer | 2725 reflections with I > 2σ(I) |
13719 measured reflections | Rint = 0.020 |
3132 independent reflections |
R[F2 > 2σ(F2)] = 0.041 | 0 restraints |
wR(F2) = 0.117 | H-atom parameters constrained |
S = 1.11 | Δρmax = 0.68 e Å−3 |
5520 reflections | Δρmin = −0.18 e Å−3 |
312 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.8749 (3) | 0.19440 (18) | 0.08892 (10) | 0.0410 (5) | |
H1 | 0.7868 | 0.1870 | 0.0660 | 0.049* | |
C2 | 0.9926 (3) | 0.2397 (2) | 0.06213 (12) | 0.0504 (6) | |
H2 | 0.9842 | 0.2570 | 0.0211 | 0.060* | |
C3 | 1.1348 (3) | 0.2640 (2) | 0.09316 (12) | 0.0487 (6) | |
C4 | 1.1303 (3) | 0.25998 (19) | 0.16248 (12) | 0.0427 (5) | |
C5 | 1.0339 (2) | 0.16189 (17) | 0.18228 (10) | 0.0344 (4) | |
H5 | 1.0890 | 0.1003 | 0.1664 | 0.041* | |
C6 | 1.0335 (3) | 0.1469 (2) | 0.25150 (11) | 0.0417 (5) | |
H6A | 1.0424 | 0.2159 | 0.2708 | 0.050* | |
H6B | 0.9369 | 0.1166 | 0.2636 | 0.050* | |
C7 | 1.1586 (3) | 0.07683 (19) | 0.27427 (10) | 0.0406 (5) | |
C8 | 0.6587 (2) | 0.00557 (17) | 0.15184 (10) | 0.0352 (4) | |
C9 | 0.8277 (2) | 0.03182 (16) | 0.15559 (9) | 0.0324 (4) | |
H9 | 0.8598 | 0.0073 | 0.1960 | 0.039* | |
C10 | 0.8716 (2) | 0.15387 (17) | 0.15342 (10) | 0.0338 (4) | |
C11 | 0.9130 (2) | −0.04026 (19) | 0.10972 (10) | 0.0377 (5) | |
H11A | 1.0170 | −0.0156 | 0.1068 | 0.045* | |
H11B | 0.9156 | −0.1118 | 0.1261 | 0.045* | |
C12 | 0.8468 (2) | −0.04512 (19) | 0.04580 (10) | 0.0364 (4) | |
H12A | 0.9024 | −0.0975 | 0.0223 | 0.044* | |
H12B | 0.8606 | 0.0233 | 0.0262 | 0.044* | |
C13 | 0.6761 (2) | −0.07398 (16) | 0.04482 (9) | 0.0321 (4) | |
C14 | 0.5934 (2) | −0.00153 (17) | 0.08910 (10) | 0.0338 (4) | |
C15 | 0.4320 (2) | 0.0194 (2) | 0.07674 (11) | 0.0436 (5) | |
H15 | 0.3670 | 0.0315 | 0.1123 | 0.052* | |
C16 | 0.3595 (3) | −0.0313 (2) | 0.02300 (11) | 0.0466 (6) | |
C17 | 0.6142 (2) | −0.05036 (19) | −0.01938 (10) | 0.0369 (5) | |
H17 | 0.6351 | 0.0243 | −0.0288 | 0.044* | |
C18 | 0.6499 (3) | −0.18975 (18) | 0.06402 (11) | 0.0447 (5) | |
H18A | 0.5447 | −0.2074 | 0.0588 | 0.067* | |
H18B | 0.6776 | −0.1984 | 0.1060 | 0.067* | |
H18C | 0.7109 | −0.2358 | 0.0392 | 0.067* | |
C19 | 0.7500 (3) | 0.21722 (19) | 0.18871 (12) | 0.0447 (6) | |
H19A | 0.7865 | 0.2878 | 0.1964 | 0.067* | |
H19B | 0.7291 | 0.1825 | 0.2267 | 0.067* | |
H19C | 0.6587 | 0.2208 | 0.1649 | 0.067* | |
C20 | 0.6791 (3) | −0.11713 (19) | −0.06933 (10) | 0.0394 (5) | |
C21 | 0.7912 (3) | −0.0869 (2) | −0.10764 (12) | 0.0569 (7) | |
H21 | 0.8380 | −0.0207 | −0.1070 | 0.068* | |
C22 | 0.6448 (4) | −0.2222 (2) | −0.08653 (13) | 0.0603 (7) | |
H22 | 0.5727 | −0.2659 | −0.0684 | 0.072* | |
C23 | 0.7334 (4) | −0.2479 (3) | −0.13315 (12) | 0.0614 (8) | |
H23 | 0.7318 | −0.3129 | −0.1533 | 0.074* | |
C28 | 1.0646 (3) | 0.3679 (2) | 0.18309 (17) | 0.0640 (8) | |
H28A | 1.0457 | 0.3662 | 0.2262 | 0.096* | |
H28B | 0.9713 | 0.3813 | 0.1618 | 0.096* | |
H28C | 1.1360 | 0.4233 | 0.1741 | 0.096* | |
C29 | 1.2920 (3) | 0.2503 (2) | 0.18786 (14) | 0.0534 (6) | |
H29A | 1.3322 | 0.1816 | 0.1780 | 0.080* | |
H29B | 1.2898 | 0.2590 | 0.2313 | 0.080* | |
H29C | 1.3549 | 0.3043 | 0.1701 | 0.080* | |
C30 | 0.5775 (3) | −0.0189 (2) | 0.20065 (11) | 0.0503 (6) | |
H30A | 0.4774 | −0.0411 | 0.1963 | 0.060* | |
H30B | 0.6205 | −0.0139 | 0.2392 | 0.060* | |
C31 | 1.3128 (4) | 0.0371 (3) | 0.35953 (15) | 0.0744 (9) | |
H31A | 1.2729 | −0.0330 | 0.3658 | 0.112* | |
H31B | 1.3411 | 0.0674 | 0.3980 | 0.112* | |
H31C | 1.4004 | 0.0333 | 0.3336 | 0.112* | |
O1 | 0.8261 (3) | −0.1661 (2) | −0.14718 (10) | 0.0712 (6) | |
O2 | 0.44932 (17) | −0.06685 (16) | −0.02238 (8) | 0.0484 (4) | |
O3 | 0.54407 (18) | 0.09958 (13) | 0.06392 (8) | 0.0427 (4) | |
O4 | 0.22495 (19) | −0.0432 (2) | 0.01901 (10) | 0.0681 (6) | |
O5 | 1.2467 (2) | 0.2941 (2) | 0.06570 (11) | 0.0795 (7) | |
O6 | 1.2129 (2) | 0.00409 (15) | 0.24700 (8) | 0.0535 (4) | |
O7 | 1.1985 (2) | 0.10284 (18) | 0.33109 (8) | 0.0591 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0448 (12) | 0.0358 (11) | 0.0423 (12) | 0.0015 (10) | −0.0057 (10) | 0.0053 (9) |
C2 | 0.0575 (14) | 0.0491 (14) | 0.0446 (13) | −0.0022 (12) | 0.0010 (11) | 0.0135 (11) |
C3 | 0.0472 (13) | 0.0420 (12) | 0.0571 (15) | −0.0019 (11) | 0.0068 (12) | 0.0113 (11) |
C4 | 0.0369 (10) | 0.0364 (11) | 0.0549 (14) | −0.0032 (9) | 0.0027 (10) | −0.0047 (10) |
C5 | 0.0313 (9) | 0.0342 (10) | 0.0377 (11) | 0.0007 (9) | 0.0029 (9) | −0.0039 (9) |
C6 | 0.0383 (11) | 0.0486 (13) | 0.0380 (11) | 0.0017 (10) | 0.0011 (10) | −0.0083 (10) |
C7 | 0.0340 (10) | 0.0505 (13) | 0.0373 (11) | −0.0068 (10) | 0.0002 (9) | −0.0020 (10) |
C8 | 0.0333 (9) | 0.0357 (10) | 0.0368 (10) | 0.0013 (9) | 0.0054 (9) | −0.0015 (9) |
C9 | 0.0317 (9) | 0.0339 (10) | 0.0316 (9) | 0.0027 (8) | 0.0000 (8) | 0.0026 (8) |
C10 | 0.0317 (9) | 0.0330 (10) | 0.0368 (10) | 0.0028 (8) | 0.0011 (9) | −0.0006 (8) |
C11 | 0.0320 (9) | 0.0398 (11) | 0.0414 (11) | 0.0074 (9) | −0.0018 (9) | −0.0077 (10) |
C12 | 0.0293 (9) | 0.0411 (11) | 0.0386 (10) | 0.0025 (9) | 0.0041 (9) | −0.0052 (9) |
C13 | 0.0306 (9) | 0.0333 (10) | 0.0325 (10) | −0.0015 (8) | 0.0019 (8) | 0.0001 (8) |
C14 | 0.0295 (9) | 0.0351 (10) | 0.0367 (10) | 0.0001 (8) | 0.0056 (8) | 0.0020 (9) |
C15 | 0.0309 (10) | 0.0559 (14) | 0.0438 (12) | 0.0045 (10) | 0.0045 (9) | −0.0038 (11) |
C16 | 0.0320 (10) | 0.0609 (15) | 0.0470 (13) | 0.0008 (11) | 0.0005 (10) | 0.0015 (11) |
C17 | 0.0299 (9) | 0.0444 (11) | 0.0365 (10) | −0.0002 (9) | 0.0006 (8) | 0.0017 (10) |
C18 | 0.0554 (13) | 0.0355 (11) | 0.0433 (12) | −0.0041 (11) | 0.0017 (11) | 0.0028 (9) |
C19 | 0.0380 (11) | 0.0396 (12) | 0.0565 (14) | 0.0083 (10) | 0.0023 (11) | −0.0089 (11) |
C20 | 0.0365 (10) | 0.0490 (12) | 0.0327 (10) | −0.0007 (10) | −0.0034 (9) | 0.0000 (10) |
C21 | 0.0575 (15) | 0.0646 (16) | 0.0486 (14) | −0.0055 (14) | 0.0143 (13) | −0.0092 (13) |
C22 | 0.0700 (18) | 0.0625 (16) | 0.0485 (14) | −0.0169 (15) | 0.0043 (14) | −0.0103 (13) |
C23 | 0.079 (2) | 0.0610 (17) | 0.0440 (14) | 0.0081 (16) | −0.0053 (14) | −0.0161 (13) |
C28 | 0.0568 (16) | 0.0386 (13) | 0.097 (2) | −0.0021 (12) | 0.0090 (16) | −0.0122 (14) |
C29 | 0.0393 (11) | 0.0538 (15) | 0.0671 (16) | −0.0080 (12) | −0.0017 (12) | −0.0075 (13) |
C30 | 0.0443 (12) | 0.0640 (16) | 0.0426 (12) | −0.0058 (12) | 0.0092 (11) | 0.0043 (12) |
C31 | 0.0599 (16) | 0.102 (3) | 0.0610 (17) | 0.0075 (19) | −0.0247 (15) | −0.0005 (18) |
O1 | 0.0636 (12) | 0.0953 (17) | 0.0548 (11) | 0.0116 (13) | 0.0136 (10) | −0.0144 (11) |
O2 | 0.0303 (7) | 0.0707 (12) | 0.0441 (9) | −0.0009 (8) | −0.0025 (7) | −0.0084 (8) |
O3 | 0.0379 (7) | 0.0408 (8) | 0.0493 (9) | 0.0077 (7) | −0.0028 (7) | 0.0008 (7) |
O4 | 0.0308 (8) | 0.1065 (17) | 0.0671 (12) | −0.0061 (10) | 0.0017 (9) | −0.0101 (13) |
O5 | 0.0559 (12) | 0.110 (2) | 0.0727 (13) | −0.0154 (12) | 0.0136 (11) | 0.0291 (14) |
O6 | 0.0519 (10) | 0.0581 (11) | 0.0504 (10) | 0.0105 (9) | −0.0017 (8) | −0.0012 (9) |
O7 | 0.0537 (10) | 0.0788 (13) | 0.0450 (10) | 0.0036 (10) | −0.0149 (8) | −0.0079 (9) |
C1—C2 | 1.321 (3) | C14—C15 | 1.471 (3) |
C1—C10 | 1.505 (3) | C15—O3 | 1.440 (3) |
C1—H1 | 0.9300 | C15—C16 | 1.485 (3) |
C2—C3 | 1.459 (4) | C15—H15 | 0.9800 |
C2—H2 | 0.9300 | C16—O4 | 1.198 (3) |
C3—O5 | 1.215 (3) | C16—O2 | 1.348 (3) |
C3—C4 | 1.522 (4) | C17—O2 | 1.469 (2) |
C4—C29 | 1.534 (3) | C17—C20 | 1.495 (3) |
C4—C28 | 1.545 (3) | C17—H17 | 0.9800 |
C4—C5 | 1.561 (3) | C18—H18A | 0.9600 |
C5—C6 | 1.530 (3) | C18—H18B | 0.9600 |
C5—C10 | 1.567 (3) | C18—H18C | 0.9600 |
C5—H5 | 0.9800 | C19—H19A | 0.9600 |
C6—C7 | 1.498 (3) | C19—H19B | 0.9600 |
C6—H6A | 0.9700 | C19—H19C | 0.9600 |
C6—H6B | 0.9700 | C20—C21 | 1.351 (4) |
C7—O6 | 1.194 (3) | C20—C22 | 1.408 (4) |
C7—O7 | 1.336 (3) | C21—O1 | 1.358 (3) |
C8—C30 | 1.324 (3) | C21—H21 | 0.9300 |
C8—C14 | 1.495 (3) | C22—C23 | 1.327 (4) |
C8—C9 | 1.528 (3) | C22—H22 | 0.9300 |
C9—C11 | 1.550 (3) | C23—O1 | 1.350 (4) |
C9—C10 | 1.585 (3) | C23—H23 | 0.9300 |
C9—H9 | 0.9800 | C28—H28A | 0.9600 |
C10—C19 | 1.545 (3) | C28—H28B | 0.9600 |
C11—C12 | 1.520 (3) | C28—H28C | 0.9600 |
C11—H11A | 0.9700 | C29—H29A | 0.9600 |
C11—H11B | 0.9700 | C29—H29B | 0.9600 |
C12—C13 | 1.547 (3) | C29—H29C | 0.9600 |
C12—H12A | 0.9700 | C30—H30A | 0.9300 |
C12—H12B | 0.9700 | C30—H30B | 0.9300 |
C13—C14 | 1.519 (3) | C31—O7 | 1.445 (4) |
C13—C18 | 1.535 (3) | C31—H31A | 0.9600 |
C13—C17 | 1.540 (3) | C31—H31B | 0.9600 |
C14—O3 | 1.454 (3) | C31—H31C | 0.9600 |
C2—C1—C10 | 125.4 (2) | C15—C14—C13 | 116.97 (19) |
C2—C1—H1 | 117.3 | C8—C14—C13 | 116.10 (17) |
C10—C1—H1 | 117.3 | O3—C15—C14 | 59.93 (13) |
C1—C2—C3 | 123.9 (2) | O3—C15—C16 | 116.2 (2) |
C1—C2—H2 | 118.1 | C14—C15—C16 | 119.0 (2) |
C3—C2—H2 | 118.1 | O3—C15—H15 | 116.5 |
O5—C3—C2 | 122.1 (2) | C14—C15—H15 | 116.5 |
O5—C3—C4 | 121.8 (3) | C16—C15—H15 | 116.5 |
C2—C3—C4 | 115.9 (2) | O4—C16—O2 | 119.0 (2) |
C3—C4—C29 | 109.9 (2) | O4—C16—C15 | 122.5 (2) |
C3—C4—C28 | 105.8 (2) | O2—C16—C15 | 118.41 (18) |
C29—C4—C28 | 108.2 (2) | O2—C17—C20 | 105.46 (18) |
C3—C4—C5 | 108.59 (19) | O2—C17—C13 | 111.37 (17) |
C29—C4—C5 | 110.0 (2) | C20—C17—C13 | 115.22 (18) |
C28—C4—C5 | 114.23 (19) | O2—C17—H17 | 108.2 |
C6—C5—C4 | 112.02 (19) | C20—C17—H17 | 108.2 |
C6—C5—C10 | 113.03 (17) | C13—C17—H17 | 108.2 |
C4—C5—C10 | 115.81 (18) | C13—C18—H18A | 109.5 |
C6—C5—H5 | 104.9 | C13—C18—H18B | 109.5 |
C4—C5—H5 | 104.9 | H18A—C18—H18B | 109.5 |
C10—C5—H5 | 104.9 | C13—C18—H18C | 109.5 |
C7—C6—C5 | 113.70 (19) | H18A—C18—H18C | 109.5 |
C7—C6—H6A | 108.8 | H18B—C18—H18C | 109.5 |
C5—C6—H6A | 108.8 | C10—C19—H19A | 109.5 |
C7—C6—H6B | 108.8 | C10—C19—H19B | 109.5 |
C5—C6—H6B | 108.8 | H19A—C19—H19B | 109.5 |
H6A—C6—H6B | 107.7 | C10—C19—H19C | 109.5 |
O6—C7—O7 | 123.4 (2) | H19A—C19—H19C | 109.5 |
O6—C7—C6 | 125.4 (2) | H19B—C19—H19C | 109.5 |
O7—C7—C6 | 111.1 (2) | C21—C20—C22 | 104.8 (2) |
C30—C8—C14 | 121.5 (2) | C21—C20—C17 | 125.2 (2) |
C30—C8—C9 | 122.2 (2) | C22—C20—C17 | 130.0 (2) |
C14—C8—C9 | 115.96 (17) | C20—C21—O1 | 110.9 (3) |
C8—C9—C11 | 108.14 (17) | C20—C21—H21 | 124.6 |
C8—C9—C10 | 116.50 (17) | O1—C21—H21 | 124.6 |
C11—C9—C10 | 115.45 (17) | C23—C22—C20 | 108.0 (3) |
C8—C9—H9 | 105.2 | C23—C22—H22 | 126.0 |
C11—C9—H9 | 105.2 | C20—C22—H22 | 126.0 |
C10—C9—H9 | 105.2 | C22—C23—O1 | 110.2 (3) |
C1—C10—C19 | 108.03 (19) | C22—C23—H23 | 124.9 |
C1—C10—C5 | 109.93 (18) | O1—C23—H23 | 124.9 |
C19—C10—C5 | 113.42 (18) | C4—C28—H28A | 109.5 |
C1—C10—C9 | 111.20 (17) | C4—C28—H28B | 109.5 |
C19—C10—C9 | 108.42 (17) | H28A—C28—H28B | 109.5 |
C5—C10—C9 | 105.86 (16) | C4—C28—H28C | 109.5 |
C12—C11—C9 | 115.89 (17) | H28A—C28—H28C | 109.5 |
C12—C11—H11A | 108.3 | H28B—C28—H28C | 109.5 |
C9—C11—H11A | 108.3 | C4—C29—H29A | 109.5 |
C12—C11—H11B | 108.3 | C4—C29—H29B | 109.5 |
C9—C11—H11B | 108.3 | H29A—C29—H29B | 109.5 |
H11A—C11—H11B | 107.4 | C4—C29—H29C | 109.5 |
C11—C12—C13 | 113.28 (18) | H29A—C29—H29C | 109.5 |
C11—C12—H12A | 108.9 | H29B—C29—H29C | 109.5 |
C13—C12—H12A | 108.9 | C8—C30—H30A | 120.0 |
C11—C12—H12B | 108.9 | C8—C30—H30B | 120.0 |
C13—C12—H12B | 108.9 | H30A—C30—H30B | 120.0 |
H12A—C12—H12B | 107.7 | O7—C31—H31A | 109.5 |
C14—C13—C18 | 108.80 (18) | O7—C31—H31B | 109.5 |
C14—C13—C17 | 107.38 (17) | H31A—C31—H31B | 109.5 |
C18—C13—C17 | 112.39 (18) | O7—C31—H31C | 109.5 |
C14—C13—C12 | 108.47 (17) | H31A—C31—H31C | 109.5 |
C18—C13—C12 | 111.46 (19) | H31B—C31—H31C | 109.5 |
C17—C13—C12 | 108.19 (17) | C23—O1—C21 | 106.1 (2) |
O3—C14—C15 | 58.98 (15) | C16—O2—C17 | 120.06 (18) |
O3—C14—C8 | 114.37 (18) | C15—O3—C14 | 61.09 (14) |
C15—C14—C8 | 122.08 (19) | C7—O7—C31 | 116.5 (2) |
O3—C14—C13 | 115.22 (17) | ||
C10—C1—C2—C3 | −4.6 (4) | C9—C8—C14—C15 | −153.4 (2) |
C1—C2—C3—O5 | 171.1 (3) | C30—C8—C14—C13 | −122.1 (2) |
C1—C2—C3—C4 | −14.6 (4) | C9—C8—C14—C13 | 52.1 (3) |
O5—C3—C4—C29 | −24.3 (4) | C18—C13—C14—O3 | −151.59 (18) |
C2—C3—C4—C29 | 161.4 (2) | C17—C13—C14—O3 | −29.7 (2) |
O5—C3—C4—C28 | 92.2 (3) | C12—C13—C14—O3 | 87.0 (2) |
C2—C3—C4—C28 | −82.1 (3) | C18—C13—C14—C15 | −85.1 (2) |
O5—C3—C4—C5 | −144.7 (3) | C17—C13—C14—C15 | 36.8 (3) |
C2—C3—C4—C5 | 41.0 (3) | C12—C13—C14—C15 | 153.5 (2) |
C3—C4—C5—C6 | 175.64 (19) | C18—C13—C14—C8 | 70.8 (2) |
C29—C4—C5—C6 | 55.3 (3) | C17—C13—C14—C8 | −167.32 (18) |
C28—C4—C5—C6 | −66.5 (3) | C12—C13—C14—C8 | −50.6 (2) |
C3—C4—C5—C10 | −52.7 (2) | C8—C14—C15—O3 | 101.0 (2) |
C29—C4—C5—C10 | −173.07 (19) | C13—C14—C15—O3 | −104.6 (2) |
C28—C4—C5—C10 | 65.1 (3) | O3—C14—C15—C16 | 105.2 (2) |
C4—C5—C6—C7 | −90.5 (2) | C8—C14—C15—C16 | −153.8 (2) |
C10—C5—C6—C7 | 136.50 (19) | C13—C14—C15—C16 | 0.6 (3) |
C5—C6—C7—O6 | −31.4 (3) | O3—C15—C16—O4 | −132.8 (3) |
C5—C6—C7—O7 | 151.5 (2) | C14—C15—C16—O4 | 158.6 (3) |
C30—C8—C9—C11 | 127.1 (2) | O3—C15—C16—O2 | 48.4 (3) |
C14—C8—C9—C11 | −47.0 (2) | C14—C15—C16—O2 | −20.2 (4) |
C30—C8—C9—C10 | −100.9 (3) | C14—C13—C17—O2 | −58.0 (2) |
C14—C8—C9—C10 | 84.9 (2) | C18—C13—C17—O2 | 61.6 (2) |
C2—C1—C10—C19 | 118.2 (3) | C12—C13—C17—O2 | −174.94 (18) |
C2—C1—C10—C5 | −6.1 (3) | C14—C13—C17—C20 | −178.09 (18) |
C2—C1—C10—C9 | −123.0 (3) | C18—C13—C17—C20 | −58.5 (3) |
C6—C5—C10—C1 | 166.66 (19) | C12—C13—C17—C20 | 65.0 (2) |
C4—C5—C10—C1 | 35.5 (2) | O2—C17—C20—C21 | 137.5 (3) |
C6—C5—C10—C19 | 45.6 (3) | C13—C17—C20—C21 | −99.2 (3) |
C4—C5—C10—C19 | −85.6 (2) | O2—C17—C20—C22 | −44.4 (3) |
C6—C5—C10—C9 | −73.1 (2) | C13—C17—C20—C22 | 78.9 (3) |
C4—C5—C10—C9 | 155.70 (18) | C22—C20—C21—O1 | 0.5 (3) |
C8—C9—C10—C1 | −81.7 (2) | C17—C20—C21—O1 | 179.0 (2) |
C11—C9—C10—C1 | 46.8 (2) | C21—C20—C22—C23 | −0.9 (3) |
C8—C9—C10—C19 | 36.9 (3) | C17—C20—C22—C23 | −179.3 (3) |
C11—C9—C10—C19 | 165.38 (18) | C20—C22—C23—O1 | 0.9 (4) |
C8—C9—C10—C5 | 158.90 (17) | C22—C23—O1—C21 | −0.6 (4) |
C11—C9—C10—C5 | −72.6 (2) | C20—C21—O1—C23 | 0.0 (3) |
C8—C9—C11—C12 | 48.3 (3) | O4—C16—O2—C17 | 178.2 (3) |
C10—C9—C11—C12 | −84.2 (2) | C15—C16—O2—C17 | −3.0 (4) |
C9—C11—C12—C13 | −53.0 (3) | C20—C17—O2—C16 | 169.0 (2) |
C11—C12—C13—C14 | 50.4 (2) | C13—C17—O2—C16 | 43.4 (3) |
C11—C12—C13—C18 | −69.3 (2) | C16—C15—O3—C14 | −109.9 (2) |
C11—C12—C13—C17 | 166.60 (19) | C8—C14—O3—C15 | −114.1 (2) |
C30—C8—C14—O3 | 99.9 (3) | C13—C14—O3—C15 | 107.6 (2) |
C9—C8—C14—O3 | −85.9 (2) | O6—C7—O7—C31 | −0.4 (4) |
C30—C8—C14—C15 | 32.5 (3) | C6—C7—O7—C31 | 176.7 (2) |
Experimental details
Crystal data | |
Chemical formula | C27H32O7 |
Mr | 468.53 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 296 |
a, b, c (Å) | 8.8125 (5), 12.5907 (7), 21.9393 (11) |
V (Å3) | 2434.3 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.48 × 0.40 × 0.36 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13719, 3132, 2725 |
Rint | 0.020 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.117, 1.11 |
No. of reflections | 5520 |
No. of parameters | 312 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.68, −0.18 |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997, publCIF (Westrip, 2010).
Acknowledgements
Financial support from the 90th Anniversary of Chulalongkorn University Fund (Ratchadaphisek Somphot Endowment Fund) and the Higher Education Research Promotion and National Research University Project of Thailand, Office of the Higher Education Commission (AS613A), is gratefully acknowledged. The authors are also grateful for research funding from the Thai Government Stimulus Package 2 (TKK2555), under the Project for Establishment of a Comprehensive Center for Innovative Food, Health Products and Agriculture.
References
Alvi, K. A., Crews, P., Aalbergsberg, B., Prasad, R., Simpson, J. & Weavers, R. T. (1991). Tetrahedron, 47, 8943–8948. CrossRef CAS Web of Science Google Scholar
Bruker (2008). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Chanin, S., Nuanyai, T., Teerawatananond, T., Pengpreecha, S., Muangsin, N. & Pudhom, K. (2010). J. Nat. Prod. 73, 1456–1459. Web of Science PubMed Google Scholar
Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358. CrossRef CAS Web of Science Google Scholar
Endo, T., Kita, M., Shimada, T., Moriguchi, T., Hidaki, T., Matsumoto, R., Hasegawa, S. & Omura, M. (2002). Plant Biotechnol. 19, 397–403. CrossRef CAS Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Koul, O., Sing, G., Singh, R., Daniewski, W. M. & Berlozecki, S. (2004). J. Biosci. 29, 409–416. Web of Science CrossRef PubMed CAS Google Scholar
Li, M.-Y., Yang, X.-B., Pan, J.-Y., Feng, G., Xiao, Q., Sinkkonen, J., Satyanandamurty, T. & Wu, J. (2009). J. Nat. Prod. 72, 2110–2114. Web of Science CrossRef PubMed CAS Google Scholar
Nakagawa, H., Duan, H. & Takaishi, Y. (2001). Chem. Pharm. Bull. 49, 649–651. Web of Science CrossRef PubMed CAS Google Scholar
Pudhom, K., Sommit, D., Nuclear, P., Ngamrojanavanich, N. & Petsom, A. (2009). J. Nat. Prod. 72, 2188–2191. Web of Science CrossRef PubMed CAS Google Scholar
Pudhom, K., Sommit, D., Nuclear, P., Ngamrojanavanich, N. & Petsom, A. (2010). J. Nat. Prod. 73, 263–269. Web of Science CrossRef CAS PubMed Google Scholar
Ravangpai, W., Sommit, D., Teerawatananond, T., Sinpranee, N., Palaga, T., Pengpreecha, S., Muangsin, N. & Pudhom, K. (2011). Bioorg. Med. Chem. Lett. 21, 4485–4489. Web of Science CSD CrossRef CAS PubMed Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
Yu, S., Wang, X.-N., Fan, C.-Q., Lin, L.-P., Ding, J. & Yue, J.-M. (2007). J. Nat. Prod. 70, 682–685. Web of Science PubMed Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Limonoids are triterpene derivatives from a precursor with a 4,4,8-trimethyl-17-furanylsteroid skeleton. Limonoid examination of the Meliaceae family is of growing interest due to a range of biological activities, such as insect antifeedants and growth regulators, antibacterial, antifungal, antimalarial, anticancer, antiviral and anti-inflammatory activities (Koul et al., 2004; Endo et al., 2002; Nakagawa et al., 2001; Ravangpai, et al., 2011). The genus Xylocarpus (Meliaceae) has proved to be a rich source of an array of structurally diverse limonoids, including gedunin, andirobin, mexicanolide and phragmalin type limonoids, with a broad range of biological activities (Alvi et al., 1991; Yu et al., 2007; Li et al., 2009). We have recently reported the isolation and identification a number of limonoids from three Thai mangroves in this genus, X. granatum, X. moluccensis and X. rumphii (Chanin et al., 2010; Pudhom et al., 2009; Pudhom et al., 2010). Herein, we report the complete assignments of NMR and the crystal structure of the title compound isolated from X. moluccensis seeds.
In the molecular structure, the conformation of the six-membered rings are distorted half-chair, chair and half-chair for the isolated cyclohenane, fused cyclohexane and lactone ring respectively (Cremer & Pople, 1975). In addition, the lactone ring bears in equatorial orientation a planar furan ring (r.m.s. deviation= 0.004 Å) which form an angle of 63.87 (13)o with the mean square plane (r.m.s. deviation Å) defined by the ten atoms of the two fused six-membered rings.