organic compounds
Methyl 4-benzyloxy-7-methoxy-1-methyl-1H-indole-2-carboxylate
aSchool of Pharmaceutical Sciences, Shandong University, Jinan 250012, People's Republic of China
*Correspondence e-mail: guisenzhao@sdu.edu.cn
There are two independent molecules in the 19H19NO4. The indole unit in each molecule is essentially planar, with mean deviations of 0.017 (1) and 0.013 (1) Å and forms dihedral angles of 50.17 (7) and 26.05 (6)° with the phenyl ring. In the crystal, molecules are linked by weak C–H⋯π interactions.
of the title compound, CRelated literature
For the antitumor activity of substituted indole compounds, see: Ziedan et al. (2010). For the crystal structures of related compounds, see: Butcher et al. (2006, 2007); Harrison et al. (2006); Hu et al. (2005). For the synthesis of 5-benzyloxy-7-bromo-1H-indole-2-carboxylic acid, see: Fresneda et al.(2001).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2008); software used to prepare material for publication: PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536812031236/lx2234sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812031236/lx2234Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536812031236/lx2234Isup3.cml
A mixture of 4-(benzyloxy)-7-bromo-1H-indole-2-carboxylic acid (Fresneda et al., 2001) (0.35 g, 1 mmol), CuI (0.19 g, 1 mmol), CH3ONa (0.38 g, 7 mmol) in anhydrous CH3OH (2 ml) and DMF (4 ml) under N2 atmosphere was heated to reflux for 5 h. After cooling to r.t., the mixture was poured into water (50 ml) and acidified with aq. HCl (6 N) to pH 1-2. The precipitate was filtered, washed several times with water, dried under vacuum, and then dissolved in anhydrous DMF. NaH (0.04 g, 1.5 mmol) was added to the solution under 0 oC followed by dimethyl sulfate (0.19 g, 1.5 mmol). The mixture was stired at r.t. for 4 h, and then was poured into ice-cold water. The precipitate was filtered, washed several times with water, and further purified by
(10% EtOAc/ Petroleum ether) and recrystallization from 10% EtOAc/Petroleum ether gave 0.21 g (64%) of white crystals. Crystals of X-ray diffraction quality were obtained by recrystallization from CH2Cl2/n-hexane mixture (4:1).All H atoms were placed geometrically and treated as riding on their parent atoms with C–H = 0.96 Å (methyl) or 0.93 Å (aromatic and methenyl), 0.82 Å (hydroxyl) and Uiso(H) = 1.2Ueq(C or O).
Substituted indole derivatives have attracted much attention due to their biological properties such as antitumor activities (Ziedan et al. 2010). Recently, the crystal structures of methyl 5-halo-1H-indole-2-carboxylate analogues were reported (Butcher et al., 2006, 2007; Harrison et al., 2006). We report herein the
of the title compound.The π interactions (Table 1 & Fig. 2, Cg1, Cg2, Cg3 and Cg4 are the centroids of C20-C25 pheny ring, C1-C6 pheny ring, C27-C32 pheny ring and C12-C15/N1 pyrrol ring, respectively.
of the title compound is shown in Fig. 1. There are two independent unique molecules [labelled A & B] in which the indole unit is essentially planar, with mean deviations of 0.017 (1) Å for A and 0.013 (1) Å for B, respectively, from the least-squares plane defined by the nine constituent atoms. The crystal packing is stabilized by weak intermolecular C–H···For the antitumor activity of substituted indole compounds, see: Ziedan et al. (2010). For the crystal structures of related compounds, see: Butcher et al. (2006, 2007); Harrison et al. (2006); Hu et al. (2005). For the synthesis of 5-benzyloxy-7-bromo-1H-indole-2-carboxylic acid, see: Fresneda et al.(2001).
Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2008); software used to prepare material for publication: PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are presented as small spheres of arbitrary radius. | |
Fig. 2. A view of the C–H···π interactions (dotted lines) in the crystal structure of the title compound. Cg denotes the ring centroids. [Symmetrycodes: (i) -x+1, -y+1, -z+1; (ii) x-1, y, z; (iii) x+1, y, z.] |
C19H19NO4 | Z = 4 |
Mr = 325.35 | F(000) = 688 |
Triclinic, P1 | Dx = 1.329 Mg m−3 |
Hall symbol: -P 1 | Melting point = 373.1–374.8 K |
a = 7.622 (2) Å | Mo Kα radiation, λ = 0.71069 Å |
b = 12.871 (4) Å | Cell parameters from 6012 reflections |
c = 16.928 (5) Å | θ = 2.5–27.2° |
α = 93.831 (3)° | µ = 0.09 mm−1 |
β = 100.158 (3)° | T = 293 K |
γ = 93.456 (3)° | Block, colourless |
V = 1626.6 (8) Å3 | 0.38 × 0.36 × 0.25 mm |
Bruker APEXII CCD area-detector diffractometer | 7421 independent reflections |
Radiation source: fine-focus sealed tube | 5286 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.023 |
φ and ω scans | θmax = 27.7°, θmin = 1.2° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −9→9 |
Tmin = 0.965, Tmax = 0.977 | k = −16→16 |
19234 measured reflections | l = −21→22 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.044 | H-atom parameters constrained |
wR(F2) = 0.134 | w = 1/[σ2(Fo2) + (0.0655P)2 + 0.2116P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max < 0.001 |
7421 reflections | Δρmax = 0.24 e Å−3 |
440 parameters | Δρmin = −0.17 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0035 (9) |
C19H19NO4 | γ = 93.456 (3)° |
Mr = 325.35 | V = 1626.6 (8) Å3 |
Triclinic, P1 | Z = 4 |
a = 7.622 (2) Å | Mo Kα radiation |
b = 12.871 (4) Å | µ = 0.09 mm−1 |
c = 16.928 (5) Å | T = 293 K |
α = 93.831 (3)° | 0.38 × 0.36 × 0.25 mm |
β = 100.158 (3)° |
Bruker APEXII CCD area-detector diffractometer | 7421 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 5286 reflections with I > 2σ(I) |
Tmin = 0.965, Tmax = 0.977 | Rint = 0.023 |
19234 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.134 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.24 e Å−3 |
7421 reflections | Δρmin = −0.17 e Å−3 |
440 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.3201 (2) | 0.71878 (13) | 0.71353 (9) | 0.0534 (4) | |
H1 | 0.2474 | 0.6626 | 0.7240 | 0.064* | |
C2 | 0.3716 (3) | 0.80075 (15) | 0.77138 (10) | 0.0667 (5) | |
H2 | 0.3344 | 0.7992 | 0.8208 | 0.080* | |
C3 | 0.4770 (3) | 0.88439 (14) | 0.75641 (11) | 0.0694 (5) | |
H3 | 0.5113 | 0.9396 | 0.7955 | 0.083* | |
C4 | 0.5321 (3) | 0.88654 (14) | 0.68313 (11) | 0.0650 (5) | |
H4 | 0.6029 | 0.9436 | 0.6727 | 0.078* | |
C5 | 0.4826 (2) | 0.80460 (12) | 0.62552 (9) | 0.0544 (4) | |
H5 | 0.5210 | 0.8063 | 0.5764 | 0.065* | |
C6 | 0.37566 (19) | 0.71944 (11) | 0.64011 (8) | 0.0443 (3) | |
C7 | 0.3246 (2) | 0.62797 (12) | 0.57930 (8) | 0.0493 (4) | |
H7A | 0.4215 | 0.5820 | 0.5825 | 0.059* | |
H7B | 0.2198 | 0.5888 | 0.5901 | 0.059* | |
C8 | 0.23533 (19) | 0.59066 (11) | 0.43789 (8) | 0.0437 (3) | |
C9 | 0.2426 (2) | 0.48538 (12) | 0.44087 (9) | 0.0511 (4) | |
H9 | 0.2843 | 0.4582 | 0.4897 | 0.061* | |
C10 | 0.1877 (2) | 0.41722 (11) | 0.37112 (9) | 0.0505 (4) | |
H10 | 0.1968 | 0.3459 | 0.3749 | 0.061* | |
C11 | 0.12125 (19) | 0.45221 (10) | 0.29780 (8) | 0.0423 (3) | |
C12 | 0.10795 (17) | 0.56092 (10) | 0.29461 (8) | 0.0385 (3) | |
C13 | 0.16855 (18) | 0.63004 (10) | 0.36340 (8) | 0.0396 (3) | |
C14 | 0.14128 (19) | 0.73230 (11) | 0.34046 (8) | 0.0434 (3) | |
H14 | 0.1698 | 0.7939 | 0.3734 | 0.052* | |
C15 | 0.06500 (19) | 0.72338 (11) | 0.26068 (8) | 0.0427 (3) | |
C16 | 0.1099 (3) | 0.28331 (12) | 0.23069 (10) | 0.0602 (4) | |
H16A | 0.2371 | 0.2812 | 0.2450 | 0.090* | |
H16B | 0.0687 | 0.2469 | 0.1787 | 0.090* | |
H16C | 0.0536 | 0.2505 | 0.2700 | 0.090* | |
C17 | −0.0428 (2) | 0.57773 (12) | 0.15155 (8) | 0.0530 (4) | |
H17A | −0.0089 | 0.5081 | 0.1415 | 0.079* | |
H17B | −0.0071 | 0.6212 | 0.1124 | 0.079* | |
H17C | −0.1700 | 0.5764 | 0.1478 | 0.079* | |
C18 | 0.0067 (2) | 0.80779 (12) | 0.21026 (9) | 0.0494 (4) | |
C19 | −0.0144 (4) | 0.98951 (14) | 0.21080 (13) | 0.0948 (8) | |
H19A | 0.0385 | 0.9929 | 0.1635 | 0.142* | |
H19B | 0.0219 | 1.0519 | 0.2456 | 0.142* | |
H19C | −0.1423 | 0.9833 | 0.1955 | 0.142* | |
C20 | 0.8907 (2) | 0.78348 (12) | 0.49954 (9) | 0.0503 (4) | |
H20 | 0.9494 | 0.7222 | 0.5012 | 0.060* | |
C21 | 0.9458 (2) | 0.86294 (13) | 0.55865 (9) | 0.0571 (4) | |
H21 | 1.0398 | 0.8545 | 0.6004 | 0.069* | |
C22 | 0.8629 (2) | 0.95491 (14) | 0.55648 (10) | 0.0606 (4) | |
H22 | 0.9003 | 1.0087 | 0.5965 | 0.073* | |
C23 | 0.7236 (2) | 0.96653 (14) | 0.49423 (11) | 0.0623 (4) | |
H23 | 0.6681 | 1.0289 | 0.4919 | 0.075* | |
C24 | 0.6664 (2) | 0.88617 (13) | 0.43554 (10) | 0.0567 (4) | |
H24 | 0.5714 | 0.8945 | 0.3943 | 0.068* | |
C25 | 0.74889 (19) | 0.79327 (12) | 0.43736 (8) | 0.0463 (3) | |
C26 | 0.6865 (2) | 0.70257 (12) | 0.37704 (9) | 0.0519 (4) | |
H26A | 0.7848 | 0.6594 | 0.3727 | 0.062* | |
H26B | 0.5928 | 0.6604 | 0.3944 | 0.062* | |
C27 | 0.5479 (2) | 0.66508 (12) | 0.24058 (8) | 0.0466 (3) | |
C28 | 0.5498 (2) | 0.55956 (12) | 0.24361 (9) | 0.0527 (4) | |
H28 | 0.6048 | 0.5323 | 0.2905 | 0.063* | |
C29 | 0.4701 (2) | 0.49140 (12) | 0.17701 (9) | 0.0529 (4) | |
H29 | 0.4747 | 0.4199 | 0.1811 | 0.064* | |
C30 | 0.3858 (2) | 0.52585 (11) | 0.10641 (9) | 0.0478 (3) | |
C31 | 0.38111 (19) | 0.63503 (11) | 0.10291 (8) | 0.0432 (3) | |
C32 | 0.46230 (19) | 0.70394 (11) | 0.16862 (8) | 0.0438 (3) | |
C33 | 0.4334 (2) | 0.80607 (12) | 0.14658 (9) | 0.0482 (3) | |
H33 | 0.4731 | 0.8677 | 0.1782 | 0.058* | |
C34 | 0.3362 (2) | 0.79755 (11) | 0.06999 (8) | 0.0466 (3) | |
C35 | 0.3145 (3) | 0.35453 (13) | 0.04259 (11) | 0.0668 (5) | |
H35A | 0.4376 | 0.3388 | 0.0539 | 0.100* | |
H35B | 0.2579 | 0.3197 | −0.0082 | 0.100* | |
H35C | 0.2549 | 0.3311 | 0.0843 | 0.100* | |
C36 | 0.1910 (3) | 0.65126 (14) | −0.03299 (10) | 0.0663 (5) | |
H36A | 0.2483 | 0.5958 | −0.0566 | 0.099* | |
H36B | 0.1735 | 0.7054 | −0.0693 | 0.099* | |
H36C | 0.0774 | 0.6248 | −0.0227 | 0.099* | |
C37 | 0.2737 (2) | 0.88262 (12) | 0.02112 (9) | 0.0518 (4) | |
C38 | 0.2686 (3) | 1.06634 (14) | 0.02114 (13) | 0.0808 (6) | |
H38A | 0.3072 | 1.0631 | −0.0299 | 0.121* | |
H38B | 0.3242 | 1.1278 | 0.0533 | 0.121* | |
H38C | 0.1411 | 1.0689 | 0.0128 | 0.121* | |
N1 | 0.04466 (15) | 0.61930 (9) | 0.23182 (6) | 0.0408 (3) | |
N2 | 0.30332 (16) | 0.69353 (9) | 0.04256 (7) | 0.0461 (3) | |
O1 | 0.28763 (15) | 0.66482 (8) | 0.50106 (6) | 0.0538 (3) | |
O2 | 0.06565 (15) | 0.38876 (7) | 0.22827 (6) | 0.0517 (3) | |
O3 | −0.06518 (19) | 0.79859 (9) | 0.14086 (7) | 0.0740 (4) | |
O4 | 0.0436 (2) | 0.90008 (8) | 0.25245 (7) | 0.0729 (4) | |
O5 | 0.62046 (16) | 0.73933 (8) | 0.30083 (6) | 0.0570 (3) | |
O6 | 0.30467 (18) | 0.46313 (9) | 0.03939 (7) | 0.0664 (3) | |
O7 | 0.1933 (2) | 0.87380 (10) | −0.04683 (7) | 0.0833 (4) | |
O8 | 0.31871 (19) | 0.97476 (9) | 0.06225 (7) | 0.0706 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0610 (9) | 0.0577 (9) | 0.0429 (8) | 0.0109 (7) | 0.0091 (7) | 0.0090 (7) |
C2 | 0.0911 (13) | 0.0698 (12) | 0.0413 (9) | 0.0209 (10) | 0.0138 (8) | 0.0030 (8) |
C3 | 0.0982 (14) | 0.0530 (10) | 0.0510 (10) | 0.0162 (10) | −0.0025 (9) | −0.0069 (8) |
C4 | 0.0822 (12) | 0.0496 (9) | 0.0588 (10) | 0.0031 (8) | −0.0005 (9) | 0.0087 (8) |
C5 | 0.0671 (10) | 0.0535 (9) | 0.0430 (8) | 0.0084 (8) | 0.0074 (7) | 0.0098 (7) |
C6 | 0.0488 (8) | 0.0478 (8) | 0.0353 (7) | 0.0145 (6) | −0.0011 (6) | 0.0094 (6) |
C7 | 0.0604 (9) | 0.0511 (9) | 0.0346 (7) | 0.0122 (7) | −0.0008 (6) | 0.0093 (6) |
C8 | 0.0506 (8) | 0.0450 (8) | 0.0334 (7) | 0.0081 (6) | 0.0000 (6) | 0.0049 (6) |
C9 | 0.0663 (10) | 0.0472 (8) | 0.0381 (7) | 0.0113 (7) | −0.0010 (7) | 0.0117 (6) |
C10 | 0.0667 (10) | 0.0371 (7) | 0.0470 (8) | 0.0084 (7) | 0.0042 (7) | 0.0098 (6) |
C11 | 0.0480 (8) | 0.0365 (7) | 0.0406 (7) | 0.0024 (6) | 0.0039 (6) | 0.0033 (6) |
C12 | 0.0411 (7) | 0.0389 (7) | 0.0347 (7) | 0.0050 (5) | 0.0027 (5) | 0.0065 (5) |
C13 | 0.0447 (7) | 0.0389 (7) | 0.0340 (7) | 0.0048 (6) | 0.0021 (5) | 0.0054 (5) |
C14 | 0.0553 (8) | 0.0374 (7) | 0.0352 (7) | 0.0057 (6) | 0.0006 (6) | 0.0032 (6) |
C15 | 0.0516 (8) | 0.0382 (7) | 0.0365 (7) | 0.0050 (6) | 0.0017 (6) | 0.0048 (6) |
C16 | 0.0812 (12) | 0.0400 (8) | 0.0578 (10) | 0.0107 (8) | 0.0073 (8) | 0.0002 (7) |
C17 | 0.0698 (10) | 0.0472 (9) | 0.0358 (7) | 0.0045 (7) | −0.0061 (7) | 0.0002 (6) |
C18 | 0.0644 (10) | 0.0424 (8) | 0.0387 (8) | 0.0060 (7) | −0.0004 (7) | 0.0074 (6) |
C19 | 0.158 (2) | 0.0454 (10) | 0.0725 (13) | 0.0247 (12) | −0.0136 (13) | 0.0174 (9) |
C20 | 0.0536 (9) | 0.0557 (9) | 0.0411 (8) | 0.0099 (7) | 0.0023 (6) | 0.0125 (7) |
C21 | 0.0607 (10) | 0.0669 (11) | 0.0409 (8) | 0.0036 (8) | −0.0011 (7) | 0.0114 (7) |
C22 | 0.0721 (11) | 0.0587 (10) | 0.0494 (9) | −0.0009 (8) | 0.0093 (8) | 0.0030 (8) |
C23 | 0.0698 (11) | 0.0544 (10) | 0.0645 (11) | 0.0141 (8) | 0.0117 (9) | 0.0097 (8) |
C24 | 0.0536 (9) | 0.0617 (10) | 0.0535 (9) | 0.0142 (8) | −0.0007 (7) | 0.0139 (8) |
C25 | 0.0485 (8) | 0.0547 (9) | 0.0367 (7) | 0.0058 (7) | 0.0060 (6) | 0.0125 (6) |
C26 | 0.0571 (9) | 0.0560 (9) | 0.0404 (8) | 0.0066 (7) | −0.0019 (6) | 0.0146 (7) |
C27 | 0.0513 (8) | 0.0490 (8) | 0.0373 (7) | 0.0040 (6) | 0.0008 (6) | 0.0070 (6) |
C28 | 0.0612 (9) | 0.0512 (9) | 0.0439 (8) | 0.0076 (7) | −0.0005 (7) | 0.0148 (7) |
C29 | 0.0634 (10) | 0.0421 (8) | 0.0527 (9) | 0.0066 (7) | 0.0050 (7) | 0.0108 (7) |
C30 | 0.0539 (9) | 0.0416 (8) | 0.0455 (8) | 0.0029 (6) | 0.0030 (6) | 0.0040 (6) |
C31 | 0.0466 (8) | 0.0441 (8) | 0.0381 (7) | 0.0040 (6) | 0.0039 (6) | 0.0077 (6) |
C32 | 0.0481 (8) | 0.0437 (8) | 0.0386 (7) | 0.0039 (6) | 0.0032 (6) | 0.0072 (6) |
C33 | 0.0597 (9) | 0.0419 (8) | 0.0397 (7) | 0.0034 (7) | −0.0011 (6) | 0.0051 (6) |
C34 | 0.0563 (9) | 0.0429 (8) | 0.0387 (7) | 0.0060 (6) | 0.0013 (6) | 0.0058 (6) |
C35 | 0.0804 (12) | 0.0481 (9) | 0.0675 (11) | 0.0063 (8) | 0.0030 (9) | 0.0002 (8) |
C36 | 0.0839 (12) | 0.0567 (10) | 0.0470 (9) | −0.0044 (9) | −0.0161 (8) | 0.0048 (8) |
C37 | 0.0668 (10) | 0.0470 (9) | 0.0395 (8) | 0.0093 (7) | 0.0008 (7) | 0.0062 (6) |
C38 | 0.1103 (16) | 0.0470 (10) | 0.0798 (13) | 0.0149 (10) | −0.0062 (12) | 0.0201 (9) |
N1 | 0.0491 (7) | 0.0377 (6) | 0.0332 (6) | 0.0037 (5) | 0.0001 (5) | 0.0040 (5) |
N2 | 0.0556 (7) | 0.0432 (7) | 0.0363 (6) | 0.0041 (5) | −0.0015 (5) | 0.0048 (5) |
O1 | 0.0787 (7) | 0.0457 (6) | 0.0319 (5) | 0.0086 (5) | −0.0060 (5) | 0.0053 (4) |
O2 | 0.0713 (7) | 0.0362 (5) | 0.0436 (6) | 0.0049 (5) | −0.0003 (5) | 0.0008 (4) |
O3 | 0.1119 (10) | 0.0530 (7) | 0.0456 (6) | 0.0096 (7) | −0.0206 (6) | 0.0104 (5) |
O4 | 0.1233 (11) | 0.0381 (6) | 0.0489 (6) | 0.0168 (6) | −0.0125 (7) | 0.0074 (5) |
O5 | 0.0752 (7) | 0.0518 (6) | 0.0374 (5) | 0.0025 (5) | −0.0093 (5) | 0.0096 (5) |
O6 | 0.0916 (9) | 0.0459 (6) | 0.0536 (7) | 0.0038 (6) | −0.0079 (6) | 0.0012 (5) |
O7 | 0.1312 (12) | 0.0600 (8) | 0.0467 (7) | 0.0181 (8) | −0.0221 (7) | 0.0085 (6) |
O8 | 0.1054 (10) | 0.0435 (6) | 0.0539 (7) | 0.0109 (6) | −0.0138 (6) | 0.0084 (5) |
C1—C2 | 1.379 (2) | C20—C21 | 1.374 (2) |
C1—C6 | 1.382 (2) | C20—C25 | 1.388 (2) |
C1—H1 | 0.9300 | C20—H20 | 0.9300 |
C2—C3 | 1.368 (3) | C21—C22 | 1.375 (2) |
C2—H2 | 0.9300 | C21—H21 | 0.9300 |
C3—C4 | 1.380 (3) | C22—C23 | 1.380 (2) |
C3—H3 | 0.9300 | C22—H22 | 0.9300 |
C4—C5 | 1.375 (2) | C23—C24 | 1.379 (2) |
C4—H4 | 0.9300 | C23—H23 | 0.9300 |
C5—C6 | 1.388 (2) | C24—C25 | 1.384 (2) |
C5—H5 | 0.9300 | C24—H24 | 0.9300 |
C6—C7 | 1.496 (2) | C25—C26 | 1.495 (2) |
C7—O1 | 1.4236 (16) | C26—O5 | 1.4222 (17) |
C7—H7A | 0.9700 | C26—H26A | 0.9700 |
C7—H7B | 0.9700 | C26—H26B | 0.9700 |
C8—C9 | 1.363 (2) | C27—C28 | 1.363 (2) |
C8—O1 | 1.3715 (17) | C27—O5 | 1.3661 (17) |
C8—C13 | 1.4129 (18) | C27—C32 | 1.4144 (19) |
C9—C10 | 1.408 (2) | C28—C29 | 1.404 (2) |
C9—H9 | 0.9300 | C28—H28 | 0.9300 |
C10—C11 | 1.371 (2) | C29—C30 | 1.368 (2) |
C10—H10 | 0.9300 | C29—H29 | 0.9300 |
C11—O2 | 1.3732 (16) | C30—O6 | 1.3752 (18) |
C11—C12 | 1.4129 (19) | C30—C31 | 1.413 (2) |
C12—N1 | 1.3772 (16) | C31—N2 | 1.3802 (18) |
C12—C13 | 1.4082 (18) | C31—C32 | 1.4022 (19) |
C13—C14 | 1.4139 (19) | C32—C33 | 1.410 (2) |
C14—C15 | 1.3672 (19) | C33—C34 | 1.369 (2) |
C14—H14 | 0.9300 | C33—H33 | 0.9300 |
C15—N1 | 1.3850 (17) | C34—N2 | 1.3807 (18) |
C15—C18 | 1.4679 (19) | C34—C37 | 1.468 (2) |
C16—O2 | 1.4196 (18) | C35—O6 | 1.409 (2) |
C16—H16A | 0.9600 | C35—H35A | 0.9600 |
C16—H16B | 0.9600 | C35—H35B | 0.9600 |
C16—H16C | 0.9600 | C35—H35C | 0.9600 |
C17—N1 | 1.4551 (17) | C36—N2 | 1.4591 (19) |
C17—H17A | 0.9600 | C36—H36A | 0.9600 |
C17—H17B | 0.9600 | C36—H36B | 0.9600 |
C17—H17C | 0.9600 | C36—H36C | 0.9600 |
C18—O3 | 1.2005 (18) | C37—O7 | 1.1986 (18) |
C18—O4 | 1.3325 (18) | C37—O8 | 1.3287 (18) |
C19—O4 | 1.441 (2) | C38—O8 | 1.446 (2) |
C19—H19A | 0.9600 | C38—H38A | 0.9600 |
C19—H19B | 0.9600 | C38—H38B | 0.9600 |
C19—H19C | 0.9600 | C38—H38C | 0.9600 |
C2—C1—C6 | 120.56 (16) | C21—C22—C23 | 119.26 (16) |
C2—C1—H1 | 119.7 | C21—C22—H22 | 120.4 |
C6—C1—H1 | 119.7 | C23—C22—H22 | 120.4 |
C3—C2—C1 | 120.31 (16) | C24—C23—C22 | 120.38 (16) |
C3—C2—H2 | 119.8 | C24—C23—H23 | 119.8 |
C1—C2—H2 | 119.8 | C22—C23—H23 | 119.8 |
C2—C3—C4 | 119.77 (17) | C23—C24—C25 | 120.72 (15) |
C2—C3—H3 | 120.1 | C23—C24—H24 | 119.6 |
C4—C3—H3 | 120.1 | C25—C24—H24 | 119.6 |
C5—C4—C3 | 120.18 (17) | C24—C25—C20 | 118.19 (14) |
C5—C4—H4 | 119.9 | C24—C25—C26 | 122.53 (13) |
C3—C4—H4 | 119.9 | C20—C25—C26 | 119.24 (14) |
C4—C5—C6 | 120.49 (15) | O5—C26—C25 | 109.67 (12) |
C4—C5—H5 | 119.8 | O5—C26—H26A | 109.7 |
C6—C5—H5 | 119.8 | C25—C26—H26A | 109.7 |
C1—C6—C5 | 118.69 (14) | O5—C26—H26B | 109.7 |
C1—C6—C7 | 119.86 (14) | C25—C26—H26B | 109.7 |
C5—C6—C7 | 121.42 (13) | H26A—C26—H26B | 108.2 |
O1—C7—C6 | 108.96 (12) | C28—C27—O5 | 126.64 (13) |
O1—C7—H7A | 109.9 | C28—C27—C32 | 118.10 (13) |
C6—C7—H7A | 109.9 | O5—C27—C32 | 115.26 (13) |
O1—C7—H7B | 109.9 | C27—C28—C29 | 120.96 (14) |
C6—C7—H7B | 109.9 | C27—C28—H28 | 119.5 |
H7A—C7—H7B | 108.3 | C29—C28—H28 | 119.5 |
C9—C8—O1 | 126.36 (13) | C30—C29—C28 | 122.72 (14) |
C9—C8—C13 | 118.56 (13) | C30—C29—H29 | 118.6 |
O1—C8—C13 | 115.09 (12) | C28—C29—H29 | 118.6 |
C8—C9—C10 | 120.92 (13) | C29—C30—O6 | 125.43 (14) |
C8—C9—H9 | 119.5 | C29—C30—C31 | 116.82 (13) |
C10—C9—H9 | 119.5 | O6—C30—C31 | 117.75 (13) |
C11—C10—C9 | 122.34 (13) | N2—C31—C32 | 108.04 (12) |
C11—C10—H10 | 118.8 | N2—C31—C30 | 130.95 (13) |
C9—C10—H10 | 118.8 | C32—C31—C30 | 121.00 (13) |
C10—C11—O2 | 124.41 (13) | C31—C32—C33 | 107.24 (12) |
C10—C11—C12 | 117.17 (13) | C31—C32—C27 | 120.38 (13) |
O2—C11—C12 | 118.42 (12) | C33—C32—C27 | 132.35 (13) |
N1—C12—C13 | 107.93 (11) | C34—C33—C32 | 107.24 (13) |
N1—C12—C11 | 131.19 (12) | C34—C33—H33 | 126.4 |
C13—C12—C11 | 120.88 (12) | C32—C33—H33 | 126.4 |
C12—C13—C8 | 120.06 (12) | C33—C34—N2 | 109.64 (12) |
C12—C13—C14 | 107.30 (11) | C33—C34—C37 | 127.48 (14) |
C8—C13—C14 | 132.60 (13) | N2—C34—C37 | 122.87 (13) |
C15—C14—C13 | 107.01 (12) | O6—C35—H35A | 109.5 |
C15—C14—H14 | 126.5 | O6—C35—H35B | 109.5 |
C13—C14—H14 | 126.5 | H35A—C35—H35B | 109.5 |
C14—C15—N1 | 109.88 (12) | O6—C35—H35C | 109.5 |
C14—C15—C18 | 127.42 (13) | H35A—C35—H35C | 109.5 |
N1—C15—C18 | 122.69 (12) | H35B—C35—H35C | 109.5 |
O2—C16—H16A | 109.5 | N2—C36—H36A | 109.5 |
O2—C16—H16B | 109.5 | N2—C36—H36B | 109.5 |
H16A—C16—H16B | 109.5 | H36A—C36—H36B | 109.5 |
O2—C16—H16C | 109.5 | N2—C36—H36C | 109.5 |
H16A—C16—H16C | 109.5 | H36A—C36—H36C | 109.5 |
H16B—C16—H16C | 109.5 | H36B—C36—H36C | 109.5 |
N1—C17—H17A | 109.5 | O7—C37—O8 | 122.61 (14) |
N1—C17—H17B | 109.5 | O7—C37—C34 | 126.56 (15) |
H17A—C17—H17B | 109.5 | O8—C37—C34 | 110.83 (13) |
N1—C17—H17C | 109.5 | O8—C38—H38A | 109.5 |
H17A—C17—H17C | 109.5 | O8—C38—H38B | 109.5 |
H17B—C17—H17C | 109.5 | H38A—C38—H38B | 109.5 |
O3—C18—O4 | 122.79 (14) | O8—C38—H38C | 109.5 |
O3—C18—C15 | 126.74 (14) | H38A—C38—H38C | 109.5 |
O4—C18—C15 | 110.46 (12) | H38B—C38—H38C | 109.5 |
O4—C19—H19A | 109.5 | C12—N1—C15 | 107.88 (11) |
O4—C19—H19B | 109.5 | C12—N1—C17 | 125.66 (12) |
H19A—C19—H19B | 109.5 | C15—N1—C17 | 126.24 (11) |
O4—C19—H19C | 109.5 | C31—N2—C34 | 107.83 (11) |
H19A—C19—H19C | 109.5 | C31—N2—C36 | 125.27 (13) |
H19B—C19—H19C | 109.5 | C34—N2—C36 | 126.61 (13) |
C21—C20—C25 | 121.04 (15) | C8—O1—C7 | 116.60 (11) |
C21—C20—H20 | 119.5 | C11—O2—C16 | 116.44 (11) |
C25—C20—H20 | 119.5 | C18—O4—C19 | 116.04 (13) |
C20—C21—C22 | 120.38 (15) | C27—O5—C26 | 116.35 (12) |
C20—C21—H21 | 119.8 | C30—O6—C35 | 117.35 (13) |
C22—C21—H21 | 119.8 | C37—O8—C38 | 117.08 (13) |
C6—C1—C2—C3 | 0.7 (3) | C29—C30—C31—N2 | −177.77 (15) |
C1—C2—C3—C4 | −0.1 (3) | O6—C30—C31—N2 | 1.7 (2) |
C2—C3—C4—C5 | −0.5 (3) | C29—C30—C31—C32 | 1.1 (2) |
C3—C4—C5—C6 | 0.5 (3) | O6—C30—C31—C32 | −179.44 (13) |
C2—C1—C6—C5 | −0.6 (2) | N2—C31—C32—C33 | −0.50 (16) |
C2—C1—C6—C7 | 177.57 (14) | C30—C31—C32—C33 | −179.63 (14) |
C4—C5—C6—C1 | 0.0 (2) | N2—C31—C32—C27 | 177.89 (13) |
C4—C5—C6—C7 | −178.14 (14) | C30—C31—C32—C27 | −1.2 (2) |
C1—C6—C7—O1 | 142.32 (14) | C28—C27—C32—C31 | 0.4 (2) |
C5—C6—C7—O1 | −39.53 (19) | O5—C27—C32—C31 | −179.26 (13) |
O1—C8—C9—C10 | −178.78 (14) | C28—C27—C32—C33 | 178.38 (16) |
C13—C8—C9—C10 | 1.1 (2) | O5—C27—C32—C33 | −1.3 (2) |
C8—C9—C10—C11 | −1.4 (2) | C31—C32—C33—C34 | 0.52 (17) |
C9—C10—C11—O2 | −179.80 (14) | C27—C32—C33—C34 | −177.60 (16) |
C9—C10—C11—C12 | −0.6 (2) | C32—C33—C34—N2 | −0.35 (18) |
C10—C11—C12—N1 | −178.50 (14) | C32—C33—C34—C37 | −179.86 (15) |
O2—C11—C12—N1 | 0.8 (2) | C33—C34—C37—O7 | 177.51 (18) |
C10—C11—C12—C13 | 2.9 (2) | N2—C34—C37—O7 | −1.9 (3) |
O2—C11—C12—C13 | −177.83 (12) | C33—C34—C37—O8 | −2.2 (2) |
N1—C12—C13—C8 | 177.81 (13) | N2—C34—C37—O8 | 178.31 (14) |
C11—C12—C13—C8 | −3.3 (2) | C13—C12—N1—C15 | −0.05 (15) |
N1—C12—C13—C14 | −0.37 (15) | C11—C12—N1—C15 | −178.80 (14) |
C11—C12—C13—C14 | 178.54 (13) | C13—C12—N1—C17 | −174.95 (13) |
C9—C8—C13—C12 | 1.2 (2) | C11—C12—N1—C17 | 6.3 (2) |
O1—C8—C13—C12 | −178.89 (12) | C14—C15—N1—C12 | 0.47 (16) |
C9—C8—C13—C14 | 178.88 (15) | C18—C15—N1—C12 | −178.30 (14) |
O1—C8—C13—C14 | −1.3 (2) | C14—C15—N1—C17 | 175.33 (14) |
C12—C13—C14—C15 | 0.64 (16) | C18—C15—N1—C17 | −3.4 (2) |
C8—C13—C14—C15 | −177.22 (16) | C32—C31—N2—C34 | 0.29 (16) |
C13—C14—C15—N1 | −0.69 (17) | C30—C31—N2—C34 | 179.30 (15) |
C13—C14—C15—C18 | 178.00 (15) | C32—C31—N2—C36 | −173.88 (14) |
C14—C15—C18—O3 | −177.52 (17) | C30—C31—N2—C36 | 5.1 (3) |
N1—C15—C18—O3 | 1.0 (3) | C33—C34—N2—C31 | 0.04 (17) |
C14—C15—C18—O4 | 2.1 (2) | C37—C34—N2—C31 | 179.58 (14) |
N1—C15—C18—O4 | −179.32 (13) | C33—C34—N2—C36 | 174.12 (15) |
C25—C20—C21—C22 | −1.1 (2) | C37—C34—N2—C36 | −6.3 (2) |
C20—C21—C22—C23 | 0.0 (3) | C9—C8—O1—C7 | −11.2 (2) |
C21—C22—C23—C24 | 1.0 (3) | C13—C8—O1—C7 | 168.92 (13) |
C22—C23—C24—C25 | −0.9 (3) | C6—C7—O1—C8 | −178.88 (12) |
C23—C24—C25—C20 | −0.2 (2) | C10—C11—O2—C16 | −11.5 (2) |
C23—C24—C25—C26 | 177.36 (15) | C12—C11—O2—C16 | 169.30 (13) |
C21—C20—C25—C24 | 1.2 (2) | O3—C18—O4—C19 | 2.4 (3) |
C21—C20—C25—C26 | −176.43 (14) | C15—C18—O4—C19 | −177.29 (18) |
C24—C25—C26—O5 | 34.3 (2) | C28—C27—O5—C26 | −7.6 (2) |
C20—C25—C26—O5 | −148.11 (14) | C32—C27—O5—C26 | 172.04 (13) |
O5—C27—C28—C29 | −179.94 (14) | C25—C26—O5—C27 | −175.97 (12) |
C32—C27—C28—C29 | 0.4 (2) | C29—C30—O6—C35 | −2.4 (2) |
C27—C28—C29—C30 | −0.5 (3) | C31—C30—O6—C35 | 178.20 (15) |
C28—C29—C30—O6 | −179.67 (15) | O7—C37—O8—C38 | −0.8 (3) |
C28—C29—C30—C31 | −0.3 (2) | C34—C37—O8—C38 | 178.94 (17) |
Cg1, Cg2, Cg3 and Cg4 are the centroids of the C20–C25 phenyl ring, C1–C6 phenyl ring, C27–C32 phenyl ring and C12–C15/N1 pyrrole ring, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···Cg1 | 0.93 | 2.88 | 3.6778 (7) | 145 |
C16—H16A···Cg2i | 0.96 | 2.87 | 3.7812 (9) | 158 |
C17—H17C···Cg3ii | 0.96 | 2.90 | 3.845 (1) | 167 |
C26—H26A···Cg4iii | 0.96 | 2.94 | 3.7442 (8) | 141 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x−1, y, z; (iii) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C19H19NO4 |
Mr | 325.35 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 7.622 (2), 12.871 (4), 16.928 (5) |
α, β, γ (°) | 93.831 (3), 100.158 (3), 93.456 (3) |
V (Å3) | 1626.6 (8) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.38 × 0.36 × 0.25 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.965, 0.977 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 19234, 7421, 5286 |
Rint | 0.023 |
(sin θ/λ)max (Å−1) | 0.653 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.134, 1.05 |
No. of reflections | 7421 |
No. of parameters | 440 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.24, −0.17 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), DIAMOND (Brandenburg, 2008), PLATON (Spek, 2009).
Cg1, Cg2, Cg3 and Cg4 are the centroids of the C20–C25 phenyl ring, C1–C6 phenyl ring, C27–C32 phenyl ring and C12–C15/N1 pyrrole ring, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···Cg1 | 0.9300 | 2.876 | 3.6778 (7) | 145.1 |
C16—H16A···Cg2i | 0.9600 | 2.873 | 3.7812 (9) | 158.2 |
C17—H17C···Cg3ii | 0.9600 | 2.904 | 3.845 (1) | 166.8 |
C26—H26A···Cg4iii | 0.9600 | 2.944 | 3.7442 (8) | 140.6 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x−1, y, z; (iii) x+1, y, z. |
Acknowledgements
This work was supported by the National Natural Science Foundation of China (grant No. 21072115) and Shandong Natural Science Foundation (grant No. ZR2011HM042).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Substituted indole derivatives have attracted much attention due to their biological properties such as antitumor activities (Ziedan et al. 2010). Recently, the crystal structures of methyl 5-halo-1H-indole-2-carboxylate analogues were reported (Butcher et al., 2006, 2007; Harrison et al., 2006). We report herein the crystal structure of the title compound.
The asymmetric unit of the title compound is shown in Fig. 1. There are two independent unique molecules [labelled A & B] in which the indole unit is essentially planar, with mean deviations of 0.017 (1) Å for A and 0.013 (1) Å for B, respectively, from the least-squares plane defined by the nine constituent atoms. The crystal packing is stabilized by weak intermolecular C–H···π interactions (Table 1 & Fig. 2, Cg1, Cg2, Cg3 and Cg4 are the centroids of C20-C25 pheny ring, C1-C6 pheny ring, C27-C32 pheny ring and C12-C15/N1 pyrrol ring, respectively.