organic compounds
Methyl 2,6-diphenyl-1-p-tolyl-4-(p-tolylamino)-1,2,5,6-tetrahydropyridine-3-carboxylate
aDepartment of Biotechnology and Food Technology, Durban University of Technology, Durban 4001, South Africa, and bCenter for Nano Science and Technology at PoliMi, Istituto Italiano di Tecnologia, Via Pascoli 70/3, 20133 Milan, Italy
*Correspondence e-mail: katharigattav@dut.ac.za, nksusa@gmail.com
In the title compound, C33H32N2O2, the tetrahydropyridine ring adopts a boat conformation with the carbonyl group in an s-cis conformation with respect to the C=C bond of the six-membered tetrahydropyridine ring. The molecular conformation is stabilized by intramolecular N—H⋯O, C—H⋯O and C—H⋯π interactions. Formation of centrosymmetric head-to-head dimers is observed through pairwise intermolecular N—H⋯O hydrogen bonds. Additional weak C—H⋯O and C—H⋯π interactions stabilize the three-dimensional molecular assembly.
Related literature
For background to the applications of piperidines, see: Pearson et al. (2005); Sakai et al. (1986); Nayak et al. (2011); Mishra & Ghosh (2011). For ring-puckering parameters, see: Cremer & Pople (1975).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008a); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008a); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and Mercury (Macrae et al., 2008); software used to prepare material for publication: PLATON (Spek, 2009) and PARST (Nardelli, 1995).
Supporting information
https://doi.org/10.1107/S1600536812030309/zl2490sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812030309/zl2490Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536812030309/zl2490Isup3.cml
To a mixture of p-toluidine (0.01 mol), methylacetoacetate (0.005 mmol), ZnCl2 (0.01 mol) and ethanol (10 ml) in a 50 ml round bottom flask was added benzaldehyde (0.01 mol). The reaction mixture was stirred at room temperature for 16 h, as monitored by TLC and then cooled to room temperature. The solid precipitate obtained was filtered and washed with aqueous ethanol to obtain a crude product (Yield 60 %; m. p. 222 (2) °C). Suitable crystals for X-ray analysis were grown from a mixture of ACN:THF (V/V;1:1) solvent by slow evaporation at room temperature.
All H atoms were positioned geometrically, C—H = 0.95 Å, 0.98 Å, 0.99 Å, 1.0 Å for aromatic, methyl, methylene and methine hydrogen respectively and N—H = 0.88 Å, and were refined using a riding model with Uiso(H)= 1.2 Ueq(C, N) for aromatic, methylene, methine and amine hydrogens, and 1.5 Ueq(C) for methyl H atoms respectively.
Piperidine iminocyclitols have shown significant pharmacological results against HIV and in cancer therapy. Two deoxynojirimycin derivatives have already found clinical applications in treatment of type-II diabetes and Gaucher's disease (Pearson et al., 2005).
containing the piperidine nucleus exhibited a promising wide range of biological activities such as antimicrobial, antiparasitic, cytotoxicity, anti-inflammatory, pesticidal and anti-HIV-1 properties (Sakai et al., 1986; Mishra & Ghosh, 2011). We have been investigating conformational and packing features of on tetrahyropyrimidine derivatives of compound (Nayak et al., 2011). In the extension of our recent work, we have been focusing on the synthesis and biological properties of piperidine analogues. Here, we determined and analyzed the single-crystal structure of the title compoundIn the title molecule, the tetrahydropyridine ring adopts a boat conformation. The Cremer & Pople (1975) parameters are Q = 0.603 (2)Å, θ = 98.16 (15)° and φ = 65.53 (15)° respectively. The carbonyl group is in a s-cis conformation with respect to the C═C bond of the six-membered tetrahydropyridine ring. The is stabilized by intramolecular N—H···O, C—H···O and C—H···π [C27—H27···Cg1 (centroid of C29—C34)] interactions (Fig.1, Table 1). Bifurcated N—H···O hydrogen bond patterns are observed with both intra- and intermolecular interactions. Pairwise intermolecular N—H···O interactions lead to formation of centrosymmetric head to head dimers (Fig. 2a). Further, weak C—H···O and C—H···π [C13—H13B···Cg2 (centroid of C7—C12); C21—H21C···Cg3 (centroid of C22—C27)] interactions stabilize the 3-dimensional molecular assembly (Fig. 2b).
For background to the applications of piperidines, see: Pearson et al. (2005); Sakai et al. (1986); Nayak et al. (2011); Mishra & Ghosh (2011). For ring-puckering parameters, see: Cremer & Pople (1975).
Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008a); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008a); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and Mercury (Macrae et al., 2008); software used to prepare material for publication: PLATON (Spek, 2009) and PARST (Nardelli, 1995).Fig. 1. View of the molecular structure showing the atom labelling scheme with displacement ellipsoids for non-H atoms at the 30% probability level. Hydrogen atoms are shown as spheres of arbitrary radius. Dotted lines indicate intramolecular N—H···O, C—H···O, and C—H···π interactions. | |
Fig. 2. (a) Bifurcated N—H···O hydrogen bonds with both intra- and intermolecular interactions, where the later interactions lead to formation of centrosymmetric head to head dimers, (b) Weak C—H···π and C—H···O interactions further stabilize the 3-dimensional molecular assembly. |
C33H32N2O2 | F(000) = 1040 |
Mr = 488.61 | Dx = 1.236 Mg m−3 |
Monoclinic, P21/c | Melting point: 495(2) K |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 13.3701 (11) Å | Cell parameters from 16734 reflections |
b = 6.1744 (5) Å | θ = 1.5–26.0° |
c = 31.797 (2) Å | µ = 0.08 mm−1 |
β = 90.381 (2)° | T = 173 K |
V = 2624.8 (4) Å3 | Plate, yellow |
Z = 4 | 0.29 × 0.13 × 0.05 mm |
Bruker Kappa DUO APEXII diffractometer | 5175 independent reflections |
Radiation source: fine-focus sealed tube | 3513 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.041 |
0.5° φ scans and ω scans | θmax = 26.0°, θmin = 1.5° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2008b) | h = −15→16 |
Tmin = 0.978, Tmax = 0.996 | k = −7→7 |
16243 measured reflections | l = −39→37 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.112 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0564P)2 + 0.077P] where P = (Fo2 + 2Fc2)/3 |
5175 reflections | (Δ/σ)max = 0.001 |
337 parameters | Δρmax = 0.18 e Å−3 |
0 restraints | Δρmin = −0.25 e Å−3 |
C33H32N2O2 | V = 2624.8 (4) Å3 |
Mr = 488.61 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 13.3701 (11) Å | µ = 0.08 mm−1 |
b = 6.1744 (5) Å | T = 173 K |
c = 31.797 (2) Å | 0.29 × 0.13 × 0.05 mm |
β = 90.381 (2)° |
Bruker Kappa DUO APEXII diffractometer | 5175 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2008b) | 3513 reflections with I > 2σ(I) |
Tmin = 0.978, Tmax = 0.996 | Rint = 0.041 |
16243 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.112 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.18 e Å−3 |
5175 reflections | Δρmin = −0.25 e Å−3 |
337 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.39224 (9) | 1.07628 (18) | 0.01596 (3) | 0.0325 (3) | |
O2 | 0.25859 (9) | 1.23990 (17) | 0.04498 (3) | 0.0329 (3) | |
N1 | 0.26268 (10) | 0.8892 (2) | 0.15100 (4) | 0.0282 (3) | |
N2 | 0.47196 (10) | 0.7370 (2) | 0.06014 (4) | 0.0300 (3) | |
H2 | 0.4771 | 0.8083 | 0.0363 | 0.036* | |
C2 | 0.23238 (12) | 0.9440 (3) | 0.10784 (5) | 0.0273 (4) | |
H2A | 0.2120 | 1.0998 | 0.1082 | 0.033* | |
C3 | 0.31945 (12) | 0.9271 (2) | 0.07746 (5) | 0.0263 (4) | |
C4 | 0.38851 (12) | 0.7657 (2) | 0.08314 (5) | 0.0266 (4) | |
C5 | 0.36664 (13) | 0.6094 (2) | 0.11802 (5) | 0.0290 (4) | |
H5A | 0.4256 | 0.5155 | 0.1229 | 0.035* | |
H5B | 0.3097 | 0.5159 | 0.1098 | 0.035* | |
C6 | 0.34127 (12) | 0.7301 (2) | 0.15878 (5) | 0.0272 (4) | |
H6 | 0.3153 | 0.6218 | 0.1794 | 0.033* | |
C7 | 0.21331 (12) | 0.9795 (3) | 0.18521 (5) | 0.0274 (4) | |
C8 | 0.14302 (14) | 1.1459 (3) | 0.18094 (5) | 0.0408 (4) | |
H8 | 0.1251 | 1.1947 | 0.1536 | 0.049* | |
C9 | 0.09902 (15) | 1.2410 (3) | 0.21542 (6) | 0.0479 (5) | |
H9 | 0.0531 | 1.3564 | 0.2111 | 0.057* | |
C10 | 0.11944 (14) | 1.1743 (3) | 0.25632 (5) | 0.0410 (4) | |
C11 | 0.18535 (14) | 1.0036 (3) | 0.26032 (5) | 0.0400 (4) | |
H11 | 0.1992 | 0.9487 | 0.2876 | 0.048* | |
C12 | 0.23208 (13) | 0.9092 (3) | 0.22634 (5) | 0.0360 (4) | |
H12 | 0.2780 | 0.7940 | 0.2310 | 0.043* | |
C13 | 0.07216 (17) | 1.2833 (4) | 0.29375 (6) | 0.0606 (6) | |
H13A | 0.0836 | 1.1951 | 0.3190 | 0.091* | |
H13B | 0.0001 | 1.2988 | 0.2888 | 0.091* | |
H13C | 0.1021 | 1.4267 | 0.2978 | 0.091* | |
C14 | 0.14036 (12) | 0.8157 (3) | 0.09319 (5) | 0.0299 (4) | |
C15 | 0.10575 (14) | 0.6362 (3) | 0.11428 (6) | 0.0430 (5) | |
H15 | 0.1383 | 0.5919 | 0.1395 | 0.052* | |
C16 | 0.02464 (16) | 0.5192 (3) | 0.09954 (7) | 0.0570 (6) | |
H16 | 0.0031 | 0.3944 | 0.1144 | 0.068* | |
C17 | −0.02498 (16) | 0.5812 (4) | 0.06370 (6) | 0.0561 (6) | |
H17 | −0.0810 | 0.5011 | 0.0537 | 0.067* | |
C18 | 0.00758 (16) | 0.7605 (4) | 0.04252 (7) | 0.0678 (7) | |
H18 | −0.0262 | 0.8057 | 0.0177 | 0.081* | |
C19 | 0.08925 (15) | 0.8762 (3) | 0.05708 (6) | 0.0541 (6) | |
H19 | 0.1108 | 1.0002 | 0.0419 | 0.065* | |
C20 | 0.32894 (12) | 1.0818 (2) | 0.04374 (5) | 0.0267 (4) | |
C21 | 0.26050 (14) | 1.3986 (3) | 0.01188 (5) | 0.0377 (4) | |
H21A | 0.3238 | 1.4786 | 0.0131 | 0.057* | |
H21B | 0.2046 | 1.4996 | 0.0154 | 0.057* | |
H21C | 0.2544 | 1.3258 | −0.0154 | 0.057* | |
C22 | 0.55320 (12) | 0.5962 (3) | 0.07236 (5) | 0.0275 (4) | |
C23 | 0.56248 (13) | 0.3923 (3) | 0.05468 (5) | 0.0316 (4) | |
H23 | 0.5148 | 0.3442 | 0.0344 | 0.038* | |
C24 | 0.64064 (13) | 0.2587 (3) | 0.06633 (5) | 0.0352 (4) | |
H24 | 0.6460 | 0.1193 | 0.0539 | 0.042* | |
C25 | 0.71143 (13) | 0.3237 (3) | 0.09577 (5) | 0.0348 (4) | |
C26 | 0.70173 (14) | 0.5291 (3) | 0.11301 (5) | 0.0378 (4) | |
H26 | 0.7497 | 0.5776 | 0.1331 | 0.045* | |
C27 | 0.62366 (13) | 0.6650 (3) | 0.10161 (5) | 0.0337 (4) | |
H27 | 0.6184 | 0.8049 | 0.1138 | 0.040* | |
C28 | 0.79502 (15) | 0.1731 (3) | 0.10946 (7) | 0.0528 (5) | |
H28A | 0.8358 | 0.2441 | 0.1312 | 0.079* | |
H28B | 0.8370 | 0.1383 | 0.0852 | 0.079* | |
H28C | 0.7664 | 0.0395 | 0.1209 | 0.079* | |
C29 | 0.43611 (12) | 0.8289 (3) | 0.17719 (5) | 0.0277 (4) | |
C30 | 0.46725 (13) | 1.0365 (3) | 0.16685 (5) | 0.0341 (4) | |
H30 | 0.4250 | 1.1271 | 0.1504 | 0.041* | |
C31 | 0.55940 (15) | 1.1125 (3) | 0.18032 (6) | 0.0474 (5) | |
H31 | 0.5804 | 1.2539 | 0.1726 | 0.057* | |
C32 | 0.62073 (16) | 0.9851 (4) | 0.20476 (6) | 0.0553 (6) | |
H32 | 0.6846 | 1.0367 | 0.2134 | 0.066* | |
C33 | 0.58895 (15) | 0.7814 (4) | 0.21667 (6) | 0.0534 (6) | |
H33 | 0.6300 | 0.6947 | 0.2344 | 0.064* | |
C34 | 0.49762 (14) | 0.7035 (3) | 0.20290 (5) | 0.0387 (4) | |
H34 | 0.4766 | 0.5627 | 0.2111 | 0.046* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0322 (7) | 0.0414 (7) | 0.0238 (6) | −0.0024 (5) | 0.0044 (5) | 0.0027 (5) |
O2 | 0.0369 (7) | 0.0333 (6) | 0.0287 (6) | 0.0033 (5) | 0.0057 (5) | 0.0072 (5) |
N1 | 0.0286 (8) | 0.0339 (7) | 0.0220 (7) | 0.0044 (6) | 0.0020 (6) | 0.0012 (6) |
N2 | 0.0305 (8) | 0.0362 (7) | 0.0234 (7) | 0.0005 (6) | 0.0046 (6) | 0.0017 (6) |
C2 | 0.0296 (9) | 0.0290 (8) | 0.0232 (8) | 0.0006 (7) | 0.0018 (7) | 0.0027 (7) |
C3 | 0.0269 (9) | 0.0295 (8) | 0.0226 (8) | −0.0039 (7) | 0.0014 (6) | −0.0016 (7) |
C4 | 0.0297 (9) | 0.0281 (8) | 0.0218 (8) | −0.0054 (7) | 0.0006 (7) | −0.0035 (7) |
C5 | 0.0315 (10) | 0.0259 (8) | 0.0299 (9) | −0.0030 (7) | 0.0044 (7) | 0.0007 (7) |
C6 | 0.0319 (9) | 0.0251 (8) | 0.0245 (8) | 0.0011 (7) | 0.0045 (7) | 0.0042 (7) |
C7 | 0.0243 (9) | 0.0328 (8) | 0.0252 (8) | −0.0034 (7) | 0.0028 (6) | −0.0015 (7) |
C8 | 0.0444 (12) | 0.0486 (11) | 0.0295 (9) | 0.0122 (9) | 0.0045 (8) | 0.0043 (8) |
C9 | 0.0477 (12) | 0.0536 (12) | 0.0424 (11) | 0.0182 (10) | 0.0075 (9) | −0.0021 (9) |
C10 | 0.0340 (10) | 0.0565 (11) | 0.0325 (9) | 0.0013 (9) | 0.0060 (8) | −0.0097 (9) |
C11 | 0.0349 (11) | 0.0594 (11) | 0.0258 (9) | 0.0009 (9) | 0.0020 (7) | −0.0012 (9) |
C12 | 0.0351 (10) | 0.0446 (10) | 0.0284 (9) | 0.0073 (8) | 0.0025 (7) | 0.0010 (8) |
C13 | 0.0560 (14) | 0.0836 (16) | 0.0422 (11) | 0.0148 (12) | 0.0087 (10) | −0.0185 (11) |
C14 | 0.0268 (9) | 0.0357 (9) | 0.0273 (8) | 0.0029 (7) | 0.0027 (7) | 0.0051 (7) |
C15 | 0.0372 (11) | 0.0499 (11) | 0.0416 (10) | −0.0104 (9) | −0.0085 (8) | 0.0179 (9) |
C16 | 0.0508 (14) | 0.0558 (12) | 0.0640 (14) | −0.0208 (10) | −0.0177 (11) | 0.0249 (11) |
C17 | 0.0398 (12) | 0.0696 (14) | 0.0586 (13) | −0.0189 (11) | −0.0161 (10) | 0.0163 (11) |
C18 | 0.0499 (14) | 0.0917 (17) | 0.0614 (14) | −0.0244 (13) | −0.0290 (11) | 0.0386 (13) |
C19 | 0.0430 (12) | 0.0645 (13) | 0.0547 (12) | −0.0165 (10) | −0.0146 (10) | 0.0326 (11) |
C20 | 0.0259 (9) | 0.0311 (8) | 0.0230 (8) | −0.0055 (7) | −0.0022 (7) | −0.0028 (7) |
C21 | 0.0422 (11) | 0.0378 (9) | 0.0330 (9) | 0.0016 (8) | 0.0017 (8) | 0.0115 (8) |
C22 | 0.0271 (9) | 0.0309 (8) | 0.0245 (8) | −0.0020 (7) | 0.0051 (7) | 0.0014 (7) |
C23 | 0.0358 (10) | 0.0322 (9) | 0.0269 (9) | −0.0057 (8) | 0.0019 (7) | −0.0018 (7) |
C24 | 0.0416 (11) | 0.0285 (8) | 0.0356 (9) | −0.0011 (8) | 0.0065 (8) | −0.0003 (8) |
C25 | 0.0309 (10) | 0.0366 (9) | 0.0369 (9) | −0.0015 (8) | 0.0056 (8) | 0.0093 (8) |
C26 | 0.0352 (11) | 0.0418 (10) | 0.0365 (10) | −0.0067 (8) | −0.0057 (8) | 0.0005 (8) |
C27 | 0.0384 (11) | 0.0323 (9) | 0.0305 (9) | −0.0025 (8) | −0.0007 (8) | −0.0057 (7) |
C28 | 0.0395 (12) | 0.0491 (11) | 0.0697 (14) | 0.0027 (9) | −0.0011 (10) | 0.0114 (11) |
C29 | 0.0301 (9) | 0.0328 (8) | 0.0204 (8) | 0.0037 (7) | 0.0043 (7) | −0.0019 (7) |
C30 | 0.0369 (10) | 0.0326 (9) | 0.0330 (9) | 0.0000 (8) | 0.0053 (8) | −0.0043 (8) |
C31 | 0.0419 (12) | 0.0509 (11) | 0.0495 (12) | −0.0120 (10) | 0.0110 (10) | −0.0199 (10) |
C32 | 0.0337 (12) | 0.0867 (16) | 0.0457 (12) | −0.0020 (11) | 0.0016 (9) | −0.0338 (12) |
C33 | 0.0404 (12) | 0.0858 (16) | 0.0339 (10) | 0.0226 (12) | −0.0071 (9) | −0.0114 (11) |
C34 | 0.0423 (11) | 0.0455 (10) | 0.0282 (9) | 0.0132 (9) | 0.0058 (8) | 0.0018 (8) |
O1—C20 | 1.2277 (18) | C15—H15 | 0.9500 |
O2—C20 | 1.3562 (19) | C16—C17 | 1.369 (3) |
O2—C21 | 1.4385 (18) | C16—H16 | 0.9500 |
N1—C7 | 1.393 (2) | C17—C18 | 1.368 (3) |
N1—C6 | 1.458 (2) | C17—H17 | 0.9500 |
N1—C2 | 1.4679 (19) | C18—C19 | 1.382 (3) |
N2—C4 | 1.3498 (19) | C18—H18 | 0.9500 |
N2—C22 | 1.443 (2) | C19—H19 | 0.9500 |
N2—H2 | 0.8800 | C21—H21A | 0.9800 |
C2—C3 | 1.521 (2) | C21—H21B | 0.9800 |
C2—C14 | 1.533 (2) | C21—H21C | 0.9800 |
C2—H2A | 1.0000 | C22—C23 | 1.384 (2) |
C3—C4 | 1.370 (2) | C22—C27 | 1.386 (2) |
C3—C20 | 1.442 (2) | C23—C24 | 1.380 (2) |
C4—C5 | 1.500 (2) | C23—H23 | 0.9500 |
C5—C6 | 1.535 (2) | C24—C25 | 1.386 (2) |
C5—H5A | 0.9900 | C24—H24 | 0.9500 |
C5—H5B | 0.9900 | C25—C26 | 1.388 (2) |
C6—C29 | 1.521 (2) | C25—C28 | 1.516 (2) |
C6—H6 | 1.0000 | C26—C27 | 1.385 (2) |
C7—C8 | 1.398 (2) | C26—H26 | 0.9500 |
C7—C12 | 1.399 (2) | C27—H27 | 0.9500 |
C8—C9 | 1.379 (2) | C28—H28A | 0.9800 |
C8—H8 | 0.9500 | C28—H28B | 0.9800 |
C9—C10 | 1.389 (2) | C28—H28C | 0.9800 |
C9—H9 | 0.9500 | C29—C30 | 1.388 (2) |
C10—C11 | 1.379 (3) | C29—C34 | 1.391 (2) |
C10—C13 | 1.510 (2) | C30—C31 | 1.384 (3) |
C11—C12 | 1.381 (2) | C30—H30 | 0.9500 |
C11—H11 | 0.9500 | C31—C32 | 1.373 (3) |
C12—H12 | 0.9500 | C31—H31 | 0.9500 |
C13—H13A | 0.9800 | C32—C33 | 1.381 (3) |
C13—H13B | 0.9800 | C32—H32 | 0.9500 |
C13—H13C | 0.9800 | C33—C34 | 1.381 (3) |
C14—C15 | 1.377 (2) | C33—H33 | 0.9500 |
C14—C19 | 1.384 (2) | C34—H34 | 0.9500 |
C15—C16 | 1.382 (3) | ||
C20—O2—C21 | 116.96 (12) | C17—C16—H16 | 119.6 |
C7—N1—C6 | 118.83 (12) | C15—C16—H16 | 119.6 |
C7—N1—C2 | 120.57 (13) | C18—C17—C16 | 118.79 (19) |
C6—N1—C2 | 120.52 (12) | C18—C17—H17 | 120.6 |
C4—N2—C22 | 123.83 (13) | C16—C17—H17 | 120.6 |
C4—N2—H2 | 118.1 | C17—C18—C19 | 120.44 (18) |
C22—N2—H2 | 118.1 | C17—C18—H18 | 119.8 |
N1—C2—C3 | 111.74 (13) | C19—C18—H18 | 119.8 |
N1—C2—C14 | 112.39 (13) | C18—C19—C14 | 121.54 (18) |
C3—C2—C14 | 112.80 (13) | C18—C19—H19 | 119.2 |
N1—C2—H2A | 106.5 | C14—C19—H19 | 119.2 |
C3—C2—H2A | 106.5 | O1—C20—O2 | 121.50 (14) |
C14—C2—H2A | 106.5 | O1—C20—C3 | 125.50 (15) |
C4—C3—C20 | 121.17 (14) | O2—C20—C3 | 113.00 (13) |
C4—C3—C2 | 118.95 (13) | O2—C21—H21A | 109.5 |
C20—C3—C2 | 119.88 (14) | O2—C21—H21B | 109.5 |
N2—C4—C3 | 125.65 (14) | H21A—C21—H21B | 109.5 |
N2—C4—C5 | 118.82 (14) | O2—C21—H21C | 109.5 |
C3—C4—C5 | 115.53 (14) | H21A—C21—H21C | 109.5 |
C4—C5—C6 | 110.94 (12) | H21B—C21—H21C | 109.5 |
C4—C5—H5A | 109.5 | C23—C22—C27 | 119.24 (15) |
C6—C5—H5A | 109.5 | C23—C22—N2 | 120.53 (14) |
C4—C5—H5B | 109.5 | C27—C22—N2 | 120.23 (14) |
C6—C5—H5B | 109.5 | C24—C23—C22 | 120.29 (16) |
H5A—C5—H5B | 108.0 | C24—C23—H23 | 119.9 |
N1—C6—C29 | 113.15 (13) | C22—C23—H23 | 119.9 |
N1—C6—C5 | 110.29 (12) | C23—C24—C25 | 121.36 (16) |
C29—C6—C5 | 109.36 (13) | C23—C24—H24 | 119.3 |
N1—C6—H6 | 108.0 | C25—C24—H24 | 119.3 |
C29—C6—H6 | 108.0 | C24—C25—C26 | 117.78 (16) |
C5—C6—H6 | 108.0 | C24—C25—C28 | 121.00 (16) |
N1—C7—C8 | 122.69 (14) | C26—C25—C28 | 121.20 (17) |
N1—C7—C12 | 121.50 (15) | C27—C26—C25 | 121.48 (16) |
C8—C7—C12 | 115.80 (15) | C27—C26—H26 | 119.3 |
C9—C8—C7 | 121.71 (16) | C25—C26—H26 | 119.3 |
C9—C8—H8 | 119.1 | C26—C27—C22 | 119.84 (16) |
C7—C8—H8 | 119.1 | C26—C27—H27 | 120.1 |
C8—C9—C10 | 122.38 (18) | C22—C27—H27 | 120.1 |
C8—C9—H9 | 118.8 | C25—C28—H28A | 109.5 |
C10—C9—H9 | 118.8 | C25—C28—H28B | 109.5 |
C11—C10—C9 | 115.75 (16) | H28A—C28—H28B | 109.5 |
C11—C10—C13 | 122.59 (17) | C25—C28—H28C | 109.5 |
C9—C10—C13 | 121.65 (18) | H28A—C28—H28C | 109.5 |
C10—C11—C12 | 122.88 (17) | H28B—C28—H28C | 109.5 |
C10—C11—H11 | 118.6 | C30—C29—C34 | 118.43 (16) |
C12—C11—H11 | 118.6 | C30—C29—C6 | 122.00 (14) |
C11—C12—C7 | 121.39 (16) | C34—C29—C6 | 119.41 (15) |
C11—C12—H12 | 119.3 | C31—C30—C29 | 120.52 (17) |
C7—C12—H12 | 119.3 | C31—C30—H30 | 119.7 |
C10—C13—H13A | 109.5 | C29—C30—H30 | 119.7 |
C10—C13—H13B | 109.5 | C32—C31—C30 | 120.53 (19) |
H13A—C13—H13B | 109.5 | C32—C31—H31 | 119.7 |
C10—C13—H13C | 109.5 | C30—C31—H31 | 119.7 |
H13A—C13—H13C | 109.5 | C31—C32—C33 | 119.53 (19) |
H13B—C13—H13C | 109.5 | C31—C32—H32 | 120.2 |
C15—C14—C19 | 117.11 (16) | C33—C32—H32 | 120.2 |
C15—C14—C2 | 122.64 (14) | C34—C33—C32 | 120.22 (19) |
C19—C14—C2 | 120.24 (15) | C34—C33—H33 | 119.9 |
C14—C15—C16 | 121.39 (17) | C32—C33—H33 | 119.9 |
C14—C15—H15 | 119.3 | C33—C34—C29 | 120.68 (18) |
C16—C15—H15 | 119.3 | C33—C34—H34 | 119.7 |
C17—C16—C15 | 120.71 (18) | C29—C34—H34 | 119.7 |
C7—N1—C2—C3 | 151.62 (14) | C3—C2—C14—C19 | −65.7 (2) |
C6—N1—C2—C3 | −31.79 (19) | C19—C14—C15—C16 | 1.2 (3) |
C7—N1—C2—C14 | −80.38 (18) | C2—C14—C15—C16 | −177.72 (19) |
C6—N1—C2—C14 | 96.20 (17) | C14—C15—C16—C17 | −1.2 (3) |
N1—C2—C3—C4 | 36.66 (19) | C15—C16—C17—C18 | 0.4 (4) |
C14—C2—C3—C4 | −91.11 (17) | C16—C17—C18—C19 | 0.2 (4) |
N1—C2—C3—C20 | −142.40 (14) | C17—C18—C19—C14 | −0.1 (4) |
C14—C2—C3—C20 | 89.83 (17) | C15—C14—C19—C18 | −0.6 (3) |
C22—N2—C4—C3 | 166.10 (15) | C2—C14—C19—C18 | 178.4 (2) |
C22—N2—C4—C5 | −14.4 (2) | C21—O2—C20—O1 | 1.0 (2) |
C20—C3—C4—N2 | 2.5 (2) | C21—O2—C20—C3 | −178.39 (13) |
C2—C3—C4—N2 | −176.52 (14) | C4—C3—C20—O1 | 5.7 (2) |
C20—C3—C4—C5 | −176.98 (13) | C2—C3—C20—O1 | −175.28 (15) |
C2—C3—C4—C5 | 4.0 (2) | C4—C3—C20—O2 | −174.94 (13) |
N2—C4—C5—C6 | 131.03 (15) | C2—C3—C20—O2 | 4.1 (2) |
C3—C4—C5—C6 | −49.43 (18) | C4—N2—C22—C23 | 100.73 (18) |
C7—N1—C6—C29 | −71.72 (18) | C4—N2—C22—C27 | −80.1 (2) |
C2—N1—C6—C29 | 111.64 (15) | C27—C22—C23—C24 | 0.5 (2) |
C7—N1—C6—C5 | 165.43 (13) | N2—C22—C23—C24 | 179.67 (15) |
C2—N1—C6—C5 | −11.21 (19) | C22—C23—C24—C25 | 0.0 (2) |
C4—C5—C6—N1 | 52.06 (17) | C23—C24—C25—C26 | −0.5 (2) |
C4—C5—C6—C29 | −72.98 (16) | C23—C24—C25—C28 | 177.92 (16) |
C6—N1—C7—C8 | 174.53 (15) | C24—C25—C26—C27 | 0.5 (3) |
C2—N1—C7—C8 | −8.8 (2) | C28—C25—C26—C27 | −177.91 (17) |
C6—N1—C7—C12 | −5.0 (2) | C25—C26—C27—C22 | 0.0 (3) |
C2—N1—C7—C12 | 171.68 (15) | C23—C22—C27—C26 | −0.5 (2) |
N1—C7—C8—C9 | −176.44 (17) | N2—C22—C27—C26 | −179.67 (15) |
C12—C7—C8—C9 | 3.1 (3) | N1—C6—C29—C30 | −33.1 (2) |
C7—C8—C9—C10 | −1.8 (3) | C5—C6—C29—C30 | 90.31 (17) |
C8—C9—C10—C11 | −1.1 (3) | N1—C6—C29—C34 | 151.50 (14) |
C8—C9—C10—C13 | 178.74 (19) | C5—C6—C29—C34 | −85.13 (17) |
C9—C10—C11—C12 | 2.7 (3) | C34—C29—C30—C31 | 2.9 (2) |
C13—C10—C11—C12 | −177.19 (19) | C6—C29—C30—C31 | −172.61 (15) |
C10—C11—C12—C7 | −1.3 (3) | C29—C30—C31—C32 | −1.2 (3) |
N1—C7—C12—C11 | 177.96 (16) | C30—C31—C32—C33 | −1.4 (3) |
C8—C7—C12—C11 | −1.6 (3) | C31—C32—C33—C34 | 2.2 (3) |
N1—C2—C14—C15 | −14.2 (2) | C32—C33—C34—C29 | −0.5 (3) |
C3—C2—C14—C15 | 113.24 (18) | C30—C29—C34—C33 | −2.1 (2) |
N1—C2—C14—C19 | 166.88 (16) | C6—C29—C34—C33 | 173.55 (15) |
Cg1, Cg2 and Cg3 are the centroids of the C29–C34, C7–C12 and C29–C34 rings, respectively. [Cg3 and Cg1 are the same ring (information taken from Comment section)?] |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O1 | 0.88 | 2.11 | 2.7343 (17) | 128 |
C19—H19···O2 | 0.95 | 2.47 | 3.213 (3) | 135 |
N2—H2···O1i | 0.88 | 2.52 | 3.2471 (17) | 140 |
C23—H23···O1ii | 0.95 | 2.40 | 3.236 (2) | 147 |
C24—H24···O1iii | 0.95 | 2.58 | 3.363 (2) | 140 |
C27—H27···Cg1 | 0.95 | 2.83 | 3.476 (2) | 126 |
C13—H13B···Cg2iv | 0.98 | 2.81 | 3.679 (2) | 148 |
C21—H21C···Cg3v | 0.98 | 2.97 | 3.487 (2) | 114 |
Symmetry codes: (i) −x+1, −y+2, −z; (ii) x, y−1, z; (iii) −x+1, −y+1, −z; (iv) −x+1, y+5/2, −z+1/2; (v) x+1, −y+5/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C33H32N2O2 |
Mr | 488.61 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 173 |
a, b, c (Å) | 13.3701 (11), 6.1744 (5), 31.797 (2) |
β (°) | 90.381 (2) |
V (Å3) | 2624.8 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.29 × 0.13 × 0.05 |
Data collection | |
Diffractometer | Bruker Kappa DUO APEXII |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2008b) |
Tmin, Tmax | 0.978, 0.996 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16243, 5175, 3513 |
Rint | 0.041 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.112, 1.03 |
No. of reflections | 5175 |
No. of parameters | 337 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.18, −0.25 |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SHELXS97 (Sheldrick, 2008a), SHELXL97 (Sheldrick, 2008a), ORTEP-3 for Windows (Farrugia, 1997) and Mercury (Macrae et al., 2008), PLATON (Spek, 2009) and PARST (Nardelli, 1995).
Cg1, Cg2 and Cg3 are the centroids of the C29–C34, C7–C12 and C29–C34 rings, respectively. [Cg3 and Cg1 are the same ring (information taken from Comment section)?] |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O1 | 0.8800 | 2.1100 | 2.7343 (17) | 128.00 |
C19—H19···O2 | 0.9500 | 2.4700 | 3.213 (3) | 135.00 |
N2—H2···O1i | 0.8800 | 2.5200 | 3.2471 (17) | 140.00 |
C23—H23···O1ii | 0.9500 | 2.4000 | 3.236 (2) | 147.00 |
C24—H24···O1iii | 0.9500 | 2.5800 | 3.363 (2) | 140.00 |
C27—H27···Cg1 | 0.9500 | 2.83 | 3.476 (2) | 126.00 |
C13—H13B···Cg2iv | 0.9800 | 2.81 | 3.679 (2) | 148.00 |
C21—H21C···Cg3v | 0.9800 | 2.97 | 3.487 (2) | 114.00 |
Symmetry codes: (i) −x+1, −y+2, −z; (ii) x, y−1, z; (iii) −x+1, −y+1, −z; (iv) −x+1, y+5/2, −z+1/2; (v) x+1, −y+5/2, z+1/2. |
Acknowledgements
The authors thank Durban University of Technology for facilities. KNV thanks NRF South Africa for a DST/NRF Innovation Postdoctoral Fellowship 2012.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Piperidine iminocyclitols have shown significant pharmacological results against HIV and in cancer therapy. Two deoxynojirimycin derivatives have already found clinical applications in treatment of type-II diabetes and Gaucher's disease (Pearson et al., 2005). Alkaloids containing the piperidine nucleus exhibited a promising wide range of biological activities such as antimicrobial, antiparasitic, cytotoxicity, anti-inflammatory, pesticidal and anti-HIV-1 properties (Sakai et al., 1986; Mishra & Ghosh, 2011). We have been investigating conformational and packing features of on tetrahyropyrimidine derivatives of compound (Nayak et al., 2011). In the extension of our recent work, we have been focusing on the synthesis and biological properties of piperidine analogues. Here, we determined and analyzed the single-crystal structure of the title compound
In the title molecule, the tetrahydropyridine ring adopts a boat conformation. The Cremer & Pople (1975) parameters are Q = 0.603 (2)Å, θ = 98.16 (15)° and φ = 65.53 (15)° respectively. The carbonyl group is in a s-cis conformation with respect to the C═C bond of the six-membered tetrahydropyridine ring. The molecular conformation is stabilized by intramolecular N—H···O, C—H···O and C—H···π [C27—H27···Cg1 (centroid of C29—C34)] interactions (Fig.1, Table 1). Bifurcated N—H···O hydrogen bond patterns are observed with both intra- and intermolecular interactions. Pairwise intermolecular N—H···O interactions lead to formation of centrosymmetric head to head dimers (Fig. 2a). Further, weak C—H···O and C—H···π [C13—H13B···Cg2 (centroid of C7—C12); C21—H21C···Cg3 (centroid of C22—C27)] interactions stabilize the 3-dimensional molecular assembly (Fig. 2b).