organic compounds
N-Acetyl-3,5-dibromo-L-tyrosine hemihydrate
aMahidol University International College, Mahidol University, Salaya Campus, Nakorn Pathom 73170, Thailand, bDepartment of Chemistry, Vassar College, Poughkeepsie, NY 12604-0484, USA, and cIstituto Chimica Biomolecolare CNR, P.le Aldo Moro 5, 00185, Rome, Italy
*Correspondence e-mail: icpakorn@mahidol.ac.th
The title compound, C11H11Br2NO4·0.5H2O, was prepared by an electrophilic bromination of N-acetyl-L-tyrosine in acetonitrile at room temperature. The two independent molecules do not differ substantially and a molecule of water completes the The synthesis of the title compound does not modify the stereochemical center, as shown by the found in this Comparison with the non-bromo starting material differs mainly by rotation features. For instance the H(methine)—C(chiral center)—C(methylene)—C(ipso) is 173.0 (2)° torsion angle in one molecule and 177.3 (2)° in the other, indicating a trans arrangement. This is in contrast with approximately 50° in the starting material. A short intermolecular Br⋯Br separation is observed [3.2938 (3) Å]. The molecules in the crystal are connected via a network of hydrogen bonds through an N—H⋯O hydrogen bond between the hydroxy group of the phenol of the tyrosine and the N—H of the amide of the other molecule and an O—H⋯O hydrogen bond between the hydroxy group of the carboxylic acid and the oxygen of the carbonyl of the amide.
Related literature
N-Acetyl-3,5-dibromo-L-tyrosine is a substrate of biological interest, for instance it is involved in the synthesis of isodityrosine unit, which has been found in numerous biologically active natural products that include K-13, OF4949 and vancomycin family of glycopeptide antibiotics. For the synthesis and specific optical activity of the title compound, see: Bovonsombat et al. (2008); Dewitt & Ingersoll (1951). For the synthesis of isodityrosine, see: Guo et al. (1997). For the structure of Bastadin 6, see: Kazlauskas et al. (1980, 1981). For the structure of the starting material, N-acetyl-L-tyrosine, see: Koszelak & van der Helm (1981). For structures with similarly short Br⋯Br contacts, see Quast et al. (1995).
Experimental
Crystal data
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Data collection: SMART (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536812032928/bg2470sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812032928/bg2470Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812032928/bg2470Isup3.cml
To a stirring solution of N-acetyl-L-tyrosine (1 mmol) in 20 ml of solvent, 2 mmol (2.0 equivalents) of N-bromosuccinimide were added in one portion. The reaction was left to stir at room temperature for 18 h. For the work up, the organic solution was diluted with 80 ml of ethyl acetate and washed three times (20 ml aliquots) with a 5% aqueous solution of Na2S2O3, followed by three washes with water (20 ml aliquots) and lastly with brine. After evaporation of the solvents under vacuum, the solid was subjected to silica gel
(EtOAc/hexanes/CH3OH (6:3:1) and 0.1% acetic acid). The product was recrystallized from water. NMR data are consistent with those reported in the literature, Bovonsombat et al. (2008). For the experiment, the crystals were obtained from a partially dried solution of the title compound dissolved in methanol (10 mg in 2 ml of methanol).All the H atoms were clearly seen in a difference Fourier but they were treated differently in
C—H's were re-positioned at their expected locations, and allowed to ride both in coordinates (C—H = 0.93/0.98 Å), as well as in isotropic displacement factors [Uiso(H) = 1.2-1.5× Ueq(host)]; those attached to N and O were refined with restrained distance ( N—H = O—H: 0.85 (1)Å) and free Uiso(H).Data collection: SMART (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C11H11Br2NO4·0.5H2O | F(000) = 764 |
Mr = 390.02 | Dx = 1.946 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 9469 reflections |
a = 7.1095 (3) Å | θ = 2.5–30.2° |
b = 22.5186 (9) Å | µ = 6.10 mm−1 |
c = 8.6486 (4) Å | T = 125 K |
β = 105.946 (1)° | Plate, colourless |
V = 1331.3 (1) Å3 | 0.23 × 0.17 × 0.05 mm |
Z = 4 |
Bruker SMART CCD area-detector diffractometer | 7067 independent reflections |
Radiation source: fine-focus sealed tube | 6449 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.030 |
phi and ω scans | θmax = 29.1°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Bruker 2007) | h = −9→9 |
Tmin = 0.334, Tmax = 0.750 | k = −30→30 |
18331 measured reflections | l = −11→11 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.022 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.048 | w = 1/[σ2(Fo2)] |
S = 0.92 | (Δ/σ)max = 0.003 |
7067 reflections | Δρmax = 0.41 e Å−3 |
361 parameters | Δρmin = −0.34 e Å−3 |
17 restraints | Absolute structure: Flack (1983), 3399 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.005 (5) |
C11H11Br2NO4·0.5H2O | V = 1331.3 (1) Å3 |
Mr = 390.02 | Z = 4 |
Monoclinic, P21 | Mo Kα radiation |
a = 7.1095 (3) Å | µ = 6.10 mm−1 |
b = 22.5186 (9) Å | T = 125 K |
c = 8.6486 (4) Å | 0.23 × 0.17 × 0.05 mm |
β = 105.946 (1)° |
Bruker SMART CCD area-detector diffractometer | 7067 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker 2007) | 6449 reflections with I > 2σ(I) |
Tmin = 0.334, Tmax = 0.750 | Rint = 0.030 |
18331 measured reflections |
R[F2 > 2σ(F2)] = 0.022 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.048 | Δρmax = 0.41 e Å−3 |
S = 0.92 | Δρmin = −0.34 e Å−3 |
7067 reflections | Absolute structure: Flack (1983), 3399 Friedel pairs |
361 parameters | Absolute structure parameter: 0.005 (5) |
17 restraints |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
Br1 | 0.52379 (3) | 0.027010 (11) | 0.09624 (3) | 0.02171 (6) | |
Br2 | −0.20768 (3) | 0.529982 (10) | 0.26246 (3) | 0.02077 (6) | |
Br3 | 0.70806 (4) | −0.044388 (11) | 0.74402 (3) | 0.02526 (7) | |
Br4 | −0.01205 (4) | 0.612664 (12) | 0.90382 (3) | 0.02911 (7) | |
C1 | 0.6076 (3) | 0.00179 (10) | 0.4288 (3) | 0.0144 (4) | |
C2 | 0.6679 (3) | 0.01750 (11) | 0.5896 (3) | 0.0170 (5) | |
C3 | 0.7095 (3) | 0.07588 (11) | 0.6382 (3) | 0.0181 (5) | |
H3 | 0.7475 | 0.0850 | 0.7473 | 0.022* | |
C4 | 0.6948 (3) | 0.12065 (11) | 0.5257 (3) | 0.0160 (4) | |
C5 | 0.6346 (3) | 0.10533 (11) | 0.3629 (3) | 0.0176 (5) | |
H5 | 0.6229 | 0.1346 | 0.2850 | 0.021* | |
C7 | 0.7528 (3) | 0.18382 (10) | 0.5762 (3) | 0.0186 (5) | |
H7B | 0.8205 | 0.2003 | 0.5028 | 0.022* | |
H7A | 0.8446 | 0.1831 | 0.6824 | 0.022* | |
C8 | 0.5815 (3) | 0.22554 (10) | 0.5802 (3) | 0.0168 (5) | |
H8 | 0.6378 | 0.2634 | 0.6268 | 0.020* | |
C9 | 0.5205 (4) | 0.20950 (11) | 0.8411 (3) | 0.0217 (5) | |
C10 | 0.3882 (4) | 0.18128 (12) | 0.9301 (3) | 0.0320 (7) | |
H10C | 0.2806 | 0.1622 | 0.8546 | 0.048* | |
H10A | 0.3392 | 0.2113 | 0.9876 | 0.048* | |
H10B | 0.4606 | 0.1524 | 1.0047 | 0.048* | |
C12 | −0.1141 (3) | 0.56247 (11) | 0.5916 (3) | 0.0168 (5) | |
C13 | −0.0614 (3) | 0.54956 (12) | 0.7546 (3) | 0.0202 (5) | |
C17 | −0.1403 (3) | 0.51408 (11) | 0.4856 (3) | 0.0163 (5) | |
C16 | −0.1215 (3) | 0.45657 (12) | 0.5400 (3) | 0.0184 (5) | |
H16 | −0.1406 | 0.4256 | 0.4661 | 0.022* | |
C14 | −0.0419 (3) | 0.49135 (12) | 0.8107 (3) | 0.0202 (5) | |
H14 | −0.0068 | 0.4843 | 0.9209 | 0.024* | |
C11 | 0.4499 (3) | 0.23828 (10) | 0.4122 (3) | 0.0156 (5) | |
C15 | −0.0741 (3) | 0.44352 (11) | 0.7047 (3) | 0.0179 (5) | |
C20 | 0.1074 (4) | 0.33012 (10) | 0.5784 (3) | 0.0199 (5) | |
C19 | 0.1059 (3) | 0.34237 (10) | 0.7516 (3) | 0.0195 (5) | |
H19 | 0.0927 | 0.3038 | 0.8002 | 0.023* | |
C21 | 0.3886 (3) | 0.34854 (10) | 0.9878 (3) | 0.0169 (5) | |
C22 | 0.5904 (4) | 0.37301 (11) | 1.0570 (3) | 0.0205 (5) | |
H22C | 0.6055 | 0.4087 | 1.0009 | 0.031* | |
H22B | 0.6853 | 0.3443 | 1.0454 | 0.031* | |
H22A | 0.6097 | 0.3817 | 1.1689 | 0.031* | |
C18 | −0.0683 (4) | 0.38071 (11) | 0.7657 (3) | 0.0224 (5) | |
H18B | −0.1881 | 0.3610 | 0.7075 | 0.027* | |
H18A | −0.0672 | 0.3821 | 0.8781 | 0.027* | |
C6 | 0.5923 (3) | 0.04698 (11) | 0.3168 (3) | 0.0161 (5) | |
N1 | 0.4654 (3) | 0.20206 (9) | 0.6814 (2) | 0.0177 (4) | |
H1N | 0.371 (3) | 0.1796 (10) | 0.634 (3) | 0.021* | |
N2 | 0.2930 (3) | 0.36671 (9) | 0.8409 (2) | 0.0189 (4) | |
H2N | 0.334 (4) | 0.3930 (9) | 0.788 (3) | 0.023* | |
O1 | 0.5651 (2) | −0.05488 (7) | 0.3754 (2) | 0.0185 (4) | |
H1O | 0.611 (4) | −0.0801 (9) | 0.445 (2) | 0.022* | |
O2 | 0.6678 (3) | 0.23827 (9) | 0.9097 (2) | 0.0316 (4) | |
O3 | 0.5303 (3) | 0.27618 (9) | 0.3358 (2) | 0.0269 (4) | |
H3O | 0.446 (3) | 0.2834 (13) | 0.2502 (19) | 0.032* | |
O4 | 0.2913 (2) | 0.21517 (7) | 0.35608 (19) | 0.0187 (3) | |
O5 | −0.1397 (2) | 0.61836 (8) | 0.53021 (19) | 0.0206 (4) | |
H5O | −0.166 (4) | 0.6438 (9) | 0.590 (3) | 0.025* | |
O6 | 0.2455 (3) | 0.33961 (8) | 0.5251 (2) | 0.0257 (4) | |
O7 | −0.0617 (3) | 0.30763 (9) | 0.4961 (2) | 0.0284 (4) | |
H7O | −0.051 (4) | 0.2962 (13) | 0.4076 (19) | 0.034* | |
O8 | 0.3140 (2) | 0.31234 (8) | 1.0623 (2) | 0.0234 (4) | |
O1W | 0.9302 (3) | 0.26971 (13) | 0.2095 (3) | 0.0520 (7) | |
H1W | 1.038 (3) | 0.2551 (16) | 0.207 (4) | 0.062* | |
H2W | 0.847 (4) | 0.2589 (17) | 0.127 (3) | 0.062* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.02863 (13) | 0.02049 (12) | 0.01247 (12) | 0.00333 (11) | −0.00033 (10) | −0.00168 (10) |
Br2 | 0.02392 (13) | 0.02328 (14) | 0.01258 (12) | 0.00015 (11) | 0.00074 (10) | 0.00066 (10) |
Br3 | 0.03634 (16) | 0.02193 (14) | 0.01756 (13) | −0.00037 (11) | 0.00752 (11) | 0.00566 (10) |
Br4 | 0.04323 (17) | 0.02575 (14) | 0.01522 (13) | 0.01038 (12) | 0.00278 (11) | −0.00298 (10) |
C1 | 0.0122 (10) | 0.0121 (11) | 0.0188 (11) | 0.0018 (9) | 0.0038 (9) | −0.0018 (9) |
C2 | 0.0181 (11) | 0.0186 (13) | 0.0149 (10) | 0.0020 (9) | 0.0054 (9) | 0.0034 (9) |
C3 | 0.0175 (11) | 0.0231 (13) | 0.0131 (11) | 0.0023 (10) | 0.0029 (9) | −0.0034 (9) |
C4 | 0.0124 (10) | 0.0150 (11) | 0.0197 (11) | 0.0008 (9) | 0.0027 (9) | −0.0009 (9) |
C5 | 0.0165 (11) | 0.0185 (12) | 0.0167 (11) | 0.0022 (9) | 0.0027 (9) | 0.0045 (9) |
C7 | 0.0151 (11) | 0.0160 (11) | 0.0217 (12) | −0.0017 (9) | −0.0002 (9) | 0.0001 (9) |
C8 | 0.0202 (11) | 0.0128 (11) | 0.0148 (11) | −0.0025 (9) | 0.0006 (9) | −0.0012 (8) |
C9 | 0.0361 (15) | 0.0121 (11) | 0.0131 (11) | 0.0057 (10) | 0.0004 (10) | −0.0008 (9) |
C10 | 0.059 (2) | 0.0202 (14) | 0.0182 (13) | −0.0014 (13) | 0.0134 (13) | 0.0011 (11) |
C12 | 0.0135 (11) | 0.0204 (13) | 0.0163 (12) | 0.0031 (9) | 0.0039 (9) | 0.0021 (10) |
C13 | 0.0166 (12) | 0.0259 (13) | 0.0174 (12) | 0.0025 (10) | 0.0033 (10) | −0.0054 (10) |
C17 | 0.0133 (10) | 0.0229 (14) | 0.0111 (10) | 0.0001 (9) | 0.0006 (8) | −0.0010 (9) |
C16 | 0.0143 (11) | 0.0225 (12) | 0.0167 (11) | −0.0016 (10) | 0.0015 (9) | −0.0029 (10) |
C14 | 0.0178 (11) | 0.0289 (14) | 0.0127 (11) | 0.0020 (10) | 0.0020 (9) | 0.0031 (10) |
C11 | 0.0188 (12) | 0.0109 (10) | 0.0171 (11) | 0.0014 (9) | 0.0046 (9) | −0.0015 (9) |
C15 | 0.0123 (10) | 0.0222 (13) | 0.0181 (11) | 0.0014 (9) | 0.0024 (9) | 0.0055 (9) |
C20 | 0.0236 (13) | 0.0103 (11) | 0.0202 (12) | 0.0010 (9) | −0.0031 (10) | 0.0023 (9) |
C19 | 0.0230 (12) | 0.0146 (11) | 0.0176 (12) | −0.0054 (9) | 0.0000 (10) | 0.0043 (9) |
C21 | 0.0220 (12) | 0.0115 (11) | 0.0163 (11) | 0.0044 (9) | 0.0039 (9) | −0.0015 (9) |
C22 | 0.0220 (12) | 0.0194 (13) | 0.0174 (11) | 0.0022 (10) | 0.0007 (9) | 0.0013 (10) |
C18 | 0.0221 (12) | 0.0233 (13) | 0.0210 (12) | −0.0035 (10) | 0.0046 (10) | 0.0047 (10) |
C6 | 0.0158 (11) | 0.0209 (12) | 0.0099 (11) | 0.0023 (9) | 0.0010 (9) | −0.0034 (9) |
N1 | 0.0236 (11) | 0.0166 (10) | 0.0116 (9) | −0.0030 (8) | 0.0024 (8) | −0.0016 (8) |
N2 | 0.0218 (10) | 0.0149 (10) | 0.0169 (10) | −0.0059 (8) | 0.0002 (8) | 0.0027 (8) |
O1 | 0.0217 (9) | 0.0142 (9) | 0.0180 (9) | 0.0010 (7) | 0.0026 (7) | 0.0005 (7) |
O2 | 0.0394 (12) | 0.0297 (11) | 0.0183 (9) | −0.0018 (9) | −0.0047 (8) | −0.0065 (8) |
O3 | 0.0218 (9) | 0.0353 (11) | 0.0198 (9) | −0.0082 (8) | −0.0008 (7) | 0.0117 (8) |
O4 | 0.0178 (8) | 0.0163 (8) | 0.0192 (8) | −0.0024 (7) | 0.0007 (7) | 0.0020 (7) |
O5 | 0.0273 (9) | 0.0184 (9) | 0.0156 (9) | 0.0072 (8) | 0.0050 (7) | 0.0001 (7) |
O6 | 0.0281 (10) | 0.0221 (10) | 0.0257 (10) | −0.0043 (8) | 0.0053 (8) | −0.0087 (8) |
O7 | 0.0292 (10) | 0.0302 (11) | 0.0203 (9) | −0.0120 (8) | −0.0024 (8) | −0.0030 (8) |
O8 | 0.0240 (9) | 0.0275 (10) | 0.0171 (8) | −0.0023 (7) | 0.0032 (7) | 0.0057 (7) |
O1W | 0.0294 (12) | 0.0756 (18) | 0.0375 (13) | 0.0269 (12) | −0.0135 (10) | −0.0321 (12) |
Br1—C6 | 1.889 (2) | C17—C16 | 1.372 (4) |
Br2—C17 | 1.890 (2) | C16—C15 | 1.402 (3) |
Br3—C2 | 1.897 (2) | C16—H16 | 0.9300 |
Br4—C13 | 1.887 (3) | C14—C15 | 1.392 (4) |
C1—O1 | 1.362 (3) | C14—H14 | 0.9300 |
C1—C2 | 1.384 (3) | C11—O4 | 1.215 (3) |
C1—C6 | 1.388 (3) | C11—O3 | 1.304 (3) |
C2—C3 | 1.387 (3) | C15—C18 | 1.506 (3) |
C3—C4 | 1.385 (3) | C20—O6 | 1.213 (3) |
C3—H3 | 0.9300 | C20—O7 | 1.318 (3) |
C4—C5 | 1.398 (3) | C20—C19 | 1.526 (3) |
C4—C7 | 1.512 (3) | C19—N2 | 1.450 (3) |
C5—C6 | 1.382 (3) | C19—C18 | 1.542 (3) |
C5—H5 | 0.9300 | C19—H19 | 0.9800 |
C7—C8 | 1.546 (3) | C21—O8 | 1.245 (3) |
C7—H7B | 0.9700 | C21—N2 | 1.330 (3) |
C7—H7A | 0.9700 | C21—C22 | 1.499 (3) |
C8—N1 | 1.457 (3) | C22—H22C | 0.9600 |
C8—C11 | 1.524 (3) | C22—H22B | 0.9600 |
C8—H8 | 0.9800 | C22—H22A | 0.9600 |
C9—O2 | 1.236 (3) | C18—H18B | 0.9700 |
C9—N1 | 1.339 (3) | C18—H18A | 0.9700 |
C9—C10 | 1.510 (4) | N1—H1N | 0.852 (7) |
C10—H10C | 0.9600 | N2—H2N | 0.847 (7) |
C10—H10A | 0.9600 | O1—H1O | 0.829 (7) |
C10—H10B | 0.9600 | O3—H3O | 0.832 (7) |
C12—O5 | 1.359 (3) | O5—H5O | 0.825 (7) |
C12—C13 | 1.386 (3) | O7—H7O | 0.830 (7) |
C12—C17 | 1.403 (3) | O1W—H1W | 0.837 (7) |
C13—C14 | 1.391 (4) | O1W—H2W | 0.830 (7) |
O1—C1—C2 | 124.0 (2) | C15—C14—C13 | 121.1 (2) |
O1—C1—C6 | 118.8 (2) | C15—C14—H14 | 119.5 |
C2—C1—C6 | 117.2 (2) | C13—C14—H14 | 119.5 |
C1—C2—C3 | 121.9 (2) | O4—C11—O3 | 124.4 (2) |
C1—C2—Br3 | 117.70 (18) | O4—C11—C8 | 124.0 (2) |
C3—C2—Br3 | 120.31 (17) | O3—C11—C8 | 111.53 (19) |
C4—C3—C2 | 120.5 (2) | C14—C15—C16 | 117.2 (2) |
C4—C3—H3 | 119.7 | C14—C15—C18 | 120.8 (2) |
C2—C3—H3 | 119.7 | C16—C15—C18 | 121.9 (2) |
C3—C4—C5 | 118.1 (2) | O6—C20—O7 | 125.2 (2) |
C3—C4—C7 | 121.3 (2) | O6—C20—C19 | 124.4 (2) |
C5—C4—C7 | 120.5 (2) | O7—C20—C19 | 110.4 (2) |
C6—C5—C4 | 120.5 (2) | N2—C19—C20 | 109.8 (2) |
C6—C5—H5 | 119.8 | N2—C19—C18 | 112.7 (2) |
C4—C5—H5 | 119.8 | C20—C19—C18 | 113.7 (2) |
C4—C7—C8 | 115.08 (18) | N2—C19—H19 | 106.8 |
C4—C7—H7B | 108.5 | C20—C19—H19 | 106.8 |
C8—C7—H7B | 108.5 | C18—C19—H19 | 106.8 |
C4—C7—H7A | 108.5 | O8—C21—N2 | 121.2 (2) |
C8—C7—H7A | 108.5 | O8—C21—C22 | 122.1 (2) |
H7B—C7—H7A | 107.5 | N2—C21—C22 | 116.8 (2) |
N1—C8—C11 | 109.89 (18) | C21—C22—H22C | 109.5 |
N1—C8—C7 | 111.89 (19) | C21—C22—H22B | 109.5 |
C11—C8—C7 | 111.97 (19) | H22C—C22—H22B | 109.5 |
N1—C8—H8 | 107.6 | C21—C22—H22A | 109.5 |
C11—C8—H8 | 107.6 | H22C—C22—H22A | 109.5 |
C7—C8—H8 | 107.6 | H22B—C22—H22A | 109.5 |
O2—C9—N1 | 122.0 (2) | C15—C18—C19 | 116.3 (2) |
O2—C9—C10 | 122.7 (2) | C15—C18—H18B | 108.2 |
N1—C9—C10 | 115.3 (2) | C19—C18—H18B | 108.2 |
C9—C10—H10C | 109.5 | C15—C18—H18A | 108.2 |
C9—C10—H10A | 109.5 | C19—C18—H18A | 108.2 |
H10C—C10—H10A | 109.5 | H18B—C18—H18A | 107.4 |
C9—C10—H10B | 109.5 | C5—C6—C1 | 121.8 (2) |
H10C—C10—H10B | 109.5 | C5—C6—Br1 | 119.52 (19) |
H10A—C10—H10B | 109.5 | C1—C6—Br1 | 118.63 (18) |
O5—C12—C13 | 124.2 (2) | C9—N1—C8 | 121.4 (2) |
O5—C12—C17 | 119.0 (2) | C9—N1—H1N | 122.9 (18) |
C13—C12—C17 | 116.9 (2) | C8—N1—H1N | 115.2 (18) |
C12—C13—C14 | 121.7 (2) | C21—N2—C19 | 123.1 (2) |
C12—C13—Br4 | 119.0 (2) | C21—N2—H2N | 124.7 (19) |
C14—C13—Br4 | 119.26 (18) | C19—N2—H2N | 112.2 (19) |
C16—C17—C12 | 121.7 (2) | C1—O1—H1O | 113 (2) |
C16—C17—Br2 | 120.17 (18) | C11—O3—H3O | 106 (2) |
C12—C17—Br2 | 118.09 (18) | C12—O5—H5O | 115 (2) |
C17—C16—C15 | 121.3 (2) | C20—O7—H7O | 108 (2) |
C17—C16—H16 | 119.3 | H1W—O1W—H2W | 108 (4) |
C15—C16—H16 | 119.3 | ||
O1—C1—C2—C3 | −179.9 (2) | N1—C8—C11—O3 | 159.0 (2) |
C6—C1—C2—C3 | 0.7 (3) | C7—C8—C11—O3 | −76.0 (2) |
O1—C1—C2—Br3 | 3.8 (3) | C13—C14—C15—C16 | 1.7 (3) |
C6—C1—C2—Br3 | −175.51 (16) | C13—C14—C15—C18 | −175.2 (2) |
C1—C2—C3—C4 | −1.1 (3) | C17—C16—C15—C14 | −1.7 (3) |
Br3—C2—C3—C4 | 175.04 (17) | C17—C16—C15—C18 | 175.2 (2) |
C2—C3—C4—C5 | 0.9 (3) | O6—C20—C19—N2 | −0.1 (3) |
C2—C3—C4—C7 | −175.7 (2) | O7—C20—C19—N2 | 179.62 (19) |
C3—C4—C5—C6 | −0.3 (3) | O6—C20—C19—C18 | 127.2 (3) |
C7—C4—C5—C6 | 176.3 (2) | O7—C20—C19—C18 | −53.2 (3) |
C3—C4—C7—C8 | −98.5 (3) | C14—C15—C18—C19 | −110.4 (3) |
C5—C4—C7—C8 | 85.1 (3) | C16—C15—C18—C19 | 72.9 (3) |
C4—C7—C8—N1 | 55.1 (3) | N2—C19—C18—C15 | 60.6 (3) |
C4—C7—C8—C11 | −68.8 (3) | C20—C19—C18—C15 | −65.1 (3) |
O5—C12—C13—C14 | 178.4 (2) | C4—C5—C6—C1 | 0.0 (3) |
C17—C12—C13—C14 | −2.2 (3) | C4—C5—C6—Br1 | −176.88 (17) |
O5—C12—C13—Br4 | −2.3 (3) | O1—C1—C6—C5 | −179.5 (2) |
C17—C12—C13—Br4 | 177.10 (17) | C2—C1—C6—C5 | −0.2 (3) |
O5—C12—C17—C16 | −178.3 (2) | O1—C1—C6—Br1 | −2.6 (3) |
C13—C12—C17—C16 | 2.3 (3) | C2—C1—C6—Br1 | 176.72 (16) |
O5—C12—C17—Br2 | 0.6 (3) | O2—C9—N1—C8 | 2.6 (4) |
C13—C12—C17—Br2 | −178.86 (17) | C10—C9—N1—C8 | −178.4 (2) |
C12—C17—C16—C15 | −0.3 (3) | C11—C8—N1—C9 | −152.5 (2) |
Br2—C17—C16—C15 | −179.19 (17) | C7—C8—N1—C9 | 82.5 (3) |
C12—C13—C14—C15 | 0.3 (4) | O8—C21—N2—C19 | −5.7 (4) |
Br4—C13—C14—C15 | −179.05 (17) | C22—C21—N2—C19 | 173.3 (2) |
N1—C8—C11—O4 | −22.1 (3) | C20—C19—N2—C21 | −135.0 (2) |
C7—C8—C11—O4 | 102.9 (3) | C18—C19—N2—C21 | 97.2 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···O1i | 0.85 (1) | 2.11 (1) | 2.945 (3) | 169 (3) |
O7—H7O···O1Wii | 0.83 (1) | 1.78 (1) | 2.607 (3) | 171 (3) |
O1W—H1W···O4iii | 0.84 (1) | 2.11 (2) | 2.814 (3) | 142 (3) |
O1W—H2W···O2iv | 0.83 (1) | 2.01 (1) | 2.836 (3) | 172 (4) |
N1—H1N···O5v | 0.85 (1) | 2.31 (1) | 3.152 (3) | 170 (2) |
O3—H3O···O8iv | 0.83 (1) | 1.76 (1) | 2.573 (2) | 165 (3) |
O5—H5O···Br4 | 0.83 (1) | 2.73 (3) | 3.1096 (16) | 110 (2) |
O5—H5O···O4vi | 0.83 (1) | 1.96 (1) | 2.732 (2) | 156 (3) |
O1—H1O···O6vii | 0.83 (1) | 2.06 (2) | 2.750 (2) | 141 (3) |
O1—H1O···Br3 | 0.83 (1) | 2.61 (3) | 3.0777 (17) | 117 (2) |
Symmetry codes: (i) −x+1, y+1/2, −z+1; (ii) x−1, y, z; (iii) x+1, y, z; (iv) x, y, z−1; (v) −x, y−1/2, −z+1; (vi) −x, y+1/2, −z+1; (vii) −x+1, y−1/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C11H11Br2NO4·0.5H2O |
Mr | 390.02 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 125 |
a, b, c (Å) | 7.1095 (3), 22.5186 (9), 8.6486 (4) |
β (°) | 105.946 (1) |
V (Å3) | 1331.3 (1) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 6.10 |
Crystal size (mm) | 0.23 × 0.17 × 0.05 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker 2007) |
Tmin, Tmax | 0.334, 0.750 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 18331, 7067, 6449 |
Rint | 0.030 |
(sin θ/λ)max (Å−1) | 0.685 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.022, 0.048, 0.92 |
No. of reflections | 7067 |
No. of parameters | 361 |
No. of restraints | 17 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.41, −0.34 |
Absolute structure | Flack (1983), 3399 Friedel pairs |
Absolute structure parameter | 0.005 (5) |
Computer programs: SMART (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2N···O1i | 0.847 (7) | 2.109 (9) | 2.945 (3) | 169 (3) |
O7—H7O···O1Wii | 0.830 (7) | 1.784 (9) | 2.607 (3) | 171 (3) |
O1W—H1W···O4iii | 0.837 (7) | 2.11 (2) | 2.814 (3) | 142 (3) |
O1W—H2W···O2iv | 0.830 (7) | 2.011 (9) | 2.836 (3) | 172 (4) |
N1—H1N···O5v | 0.852 (7) | 2.308 (9) | 3.152 (3) | 170 (2) |
O3—H3O···O8iv | 0.832 (7) | 1.762 (11) | 2.573 (2) | 165 (3) |
O5—H5O···Br4 | 0.825 (7) | 2.73 (3) | 3.1096 (16) | 110 (2) |
O5—H5O···O4vi | 0.825 (7) | 1.956 (14) | 2.732 (2) | 156 (3) |
O1—H1O···O6vii | 0.829 (7) | 2.057 (18) | 2.750 (2) | 141 (3) |
O1—H1O···Br3 | 0.829 (7) | 2.61 (3) | 3.0777 (17) | 117 (2) |
Symmetry codes: (i) −x+1, y+1/2, −z+1; (ii) x−1, y, z; (iii) x+1, y, z; (iv) x, y, z−1; (v) −x, y−1/2, −z+1; (vi) −x, y+1/2, −z+1; (vii) −x+1, y−1/2, −z+1. |
Acknowledgements
MR thanks the US National Science Foundation, through grant 0521237, for the X-ray diffractometer.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
We report here the structure of the title compound (I). The 3,5-dibromo-L-tyrosine moiety is an integral part of Bastadin 6, a secondary metabolite possessing antibacterial activity against Gram-positve bacteria, extracted from Verongrid sponge Ianthella basta. Geometrical parameters of both independent molecules do not differ substantially. Comparison with the non-bromo starting material differs mainly by rotation features. For instance the torsion angle H(methine)-C(chiral center)-C(methylene)-C(ipso) is 173.0 (2)° in one molecule, 177.3 (2)° in the other, indicating a trans arrangement. This is in contrast with 49.5 Å in the starting material (Koszelak & van der Helm, 1981). The intermolecular Br1—Br2 separation of 3.2938 (3) Å is markedly shorter than the corresponding van der Waals Br—Br separation. A similar Br–Br short separation (Br—Br = 3.295 (2) Å)) is found in exo-4,exo-8-dibromo-3,7-bis(phenylsulfonyl)bicyclo(3.3.1)nona-2,6-diene (Quast et al. (1995)). A related exploration in the CSD displays 2948 hits shorter than 3.70?Å. In about 200 hits, related Br—Br separations shorter than 3.30?Å are found, and many of them include isolated Br atoms.