organic compounds
N-(2-{[5-Bromo-2-(morpholin-4-yl)pyrimidin-4-yl]sulfanyl}-4-methoxyphenyl)-4-chlorobenzenesulfonamide
aDepartment of Studies in Physics, Manasagangotri, University of Mysore, Mysore 570 006, India, bPG Department of Studies in Chemistry, JSS College of Arts, Commerce and Science, Ooty Road, Mysore 570 025, India, and cX-ray Crystallography Laboratory, Post-Graduate Department of Physics & Electronics, University of Jammu, Jammu Tawi 180 006, India
*Correspondence e-mail: mas@physics.uni-mysore.ac.in
In the title compound, C21H20BrClN4O4S2, the benzene rings bridged by the sulfonamide group are tilted relative to each other by a dihedral angle of 70.2 (1)° and the dihedral angle between the sulfur-bridged pyrimidine and benzene rings is 69.5 (1)°. The molecular conformation is stabilized by a weak intramolecular π–π stacking interaction between the pyrimidine and the 4-chlorobenzene rings [centroid–centroid distance = 3.978 (2) Å]. The morpholine ring adopts a chair conformation. In the crystal, molecules are linked into inversion dimers by pairs of C—H⋯N hydrogen bonds and these dimers are further connected by N—H⋯O hydrogen bonds, forming a tape along the a axis.
Related literature
For related structures of et al. (2011); Akkurt et al. (2011); Kant et al. (2012). For bond-length data, see: Allen et al. (1987). For ring conformations, see: Duax & Norton (1975).
see: RodriguesExperimental
Crystal data
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Refinement
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Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell CrysAlis PRO; data reduction: CrysAlis RED (Oxford Diffraction, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: PLATON (Spek, 2009).
Supporting information
10.1107/S1600536812036689/is5183sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812036689/is5183Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812036689/is5183Isup3.cml
The reaction of N-[2-(5-bromo-2-chloro-pyrimidin-4-ylsulfanyl)-4-methoxy-phenyl]-4-chloro-benzenesulfonamide (5.22 g, 0.01 mol) with morpholine (0.88 g, 0.01) were carried out in the presence of triethylamine and the reaction mixture was allowed to stir at room temperature for 6–7 h in dry dichloromethane. The progress of the reaction was monitored by TLC. Upon completion, the solvent was removed under reduced pressure and residue was extracted with ethyl acetate. The compound was purified by successive recrystallization from methanol (yield 80%, m.p. 462–464 K)
All H atoms were positioned geometrically and were treated as riding on their parent C and N atoms, with C—H distances of 0.93–0.97 Å and N—H distance of 0.86 Å, and with Uiso(H) = 1.2Ueq(C, N) or 1.5Ueq(methyl C).
Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell
CrysAlis PRO (Oxford Diffraction, 2010); data reduction: CrysAlis RED (Oxford Diffraction, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: PLATON (Spek, 2009).Fig. 1. ORTEP view of the title molecule with the atom-labeling scheme. The displacement ellipsoids are drawn at the 40% probability level. H atoms are shown as small spheres of arbitrary radii. Fig. 2. A molecular packing view of the title compound down the a axis, showing intermolecular interactions. For clarity, hydrogen atoms which are not involved in hydrogen bonding have been omitted. |
C21H20BrClN4O4S2 | F(000) = 1160 |
Mr = 571.89 | Dx = 1.572 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 9194 reflections |
a = 10.0311 (3) Å | θ = 3.5–29.0° |
b = 17.3096 (6) Å | µ = 2.02 mm−1 |
c = 13.9223 (4) Å | T = 293 K |
β = 91.829 (3)° | Block, white |
V = 2416.16 (13) Å3 | 0.3 × 0.2 × 0.2 mm |
Z = 4 |
Oxford Diffraction Xcalibur Sapphire3 diffractometer | 4744 independent reflections |
Radiation source: fine-focus sealed tube | 3408 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.048 |
Detector resolution: 16.1049 pixels mm-1 | θmax = 26.0°, θmin = 3.7° |
w scans | h = −12→12 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) | k = −21→21 |
Tmin = 0.438, Tmax = 0.668 | l = −17→17 |
26979 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.117 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0505P)2 + 1.7709P] where P = (Fo2 + 2Fc2)/3 |
4744 reflections | (Δ/σ)max = 0.001 |
299 parameters | Δρmax = 0.42 e Å−3 |
0 restraints | Δρmin = −0.65 e Å−3 |
C21H20BrClN4O4S2 | V = 2416.16 (13) Å3 |
Mr = 571.89 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 10.0311 (3) Å | µ = 2.02 mm−1 |
b = 17.3096 (6) Å | T = 293 K |
c = 13.9223 (4) Å | 0.3 × 0.2 × 0.2 mm |
β = 91.829 (3)° |
Oxford Diffraction Xcalibur Sapphire3 diffractometer | 4744 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) | 3408 reflections with I > 2σ(I) |
Tmin = 0.438, Tmax = 0.668 | Rint = 0.048 |
26979 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 0 restraints |
wR(F2) = 0.117 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.42 e Å−3 |
4744 reflections | Δρmin = −0.65 e Å−3 |
299 parameters |
Experimental. Absorption correction: CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27–08-2010 CrysAlis171. NET) (compiled Aug 27 2010,11:50:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.5036 (3) | 0.16095 (19) | 0.0690 (2) | 0.0825 (9) | |
O2 | 0.6714 (4) | 0.24236 (18) | −0.00871 (19) | 0.0816 (9) | |
Br1 | 0.66487 (4) | 0.12100 (3) | 0.53546 (3) | 0.06449 (16) | |
S2 | 0.69475 (8) | 0.25466 (5) | 0.37229 (6) | 0.0451 (2) | |
S1 | 0.62576 (11) | 0.20307 (6) | 0.07413 (7) | 0.0605 (3) | |
Cl1 | 1.06308 (15) | −0.03829 (9) | 0.18890 (14) | 0.1136 (5) | |
C1 | 0.7553 (4) | 0.1383 (2) | 0.1103 (3) | 0.0516 (9) | |
C2 | 0.8716 (5) | 0.1366 (3) | 0.0617 (3) | 0.0750 (12) | |
H2 | 0.8858 | 0.1717 | 0.0125 | 0.090* | |
C3 | 0.9679 (5) | 0.0824 (3) | 0.0860 (4) | 0.0851 (14) | |
H3 | 1.0470 | 0.0803 | 0.0531 | 0.102* | |
C4 | 0.9451 (4) | 0.0318 (3) | 0.1593 (4) | 0.0711 (12) | |
C5 | 0.8317 (4) | 0.0349 (2) | 0.2101 (3) | 0.0647 (11) | |
H5 | 0.8197 | 0.0012 | 0.2611 | 0.078* | |
C6 | 0.7347 (4) | 0.0882 (2) | 0.1854 (3) | 0.0582 (10) | |
H6 | 0.6561 | 0.0903 | 0.2190 | 0.070* | |
N7 | 0.6095 (3) | 0.26564 (17) | 0.1598 (2) | 0.0492 (7) | |
H7 | 0.5343 | 0.2686 | 0.1876 | 0.059* | |
C8 | 0.7152 (3) | 0.31610 (19) | 0.1908 (2) | 0.0405 (7) | |
C9 | 0.7703 (4) | 0.3677 (2) | 0.1266 (3) | 0.0503 (9) | |
H9 | 0.7367 | 0.3699 | 0.0636 | 0.060* | |
C10 | 0.8737 (4) | 0.4154 (2) | 0.1548 (3) | 0.0509 (9) | |
H10 | 0.9106 | 0.4487 | 0.1105 | 0.061* | |
C11 | 0.9235 (3) | 0.41437 (19) | 0.2487 (3) | 0.0461 (8) | |
C12 | 0.8665 (3) | 0.36557 (19) | 0.3139 (2) | 0.0431 (8) | |
H12 | 0.8964 | 0.3659 | 0.3779 | 0.052* | |
C13 | 0.7647 (3) | 0.31593 (18) | 0.2847 (2) | 0.0382 (7) | |
O14 | 1.0244 (3) | 0.46473 (15) | 0.2706 (2) | 0.0633 (7) | |
C15 | 1.0716 (5) | 0.4676 (3) | 0.3673 (4) | 0.0833 (14) | |
H15A | 0.9983 | 0.4774 | 0.4083 | 0.125* | |
H15B | 1.1362 | 0.5083 | 0.3748 | 0.125* | |
H15C | 1.1123 | 0.4191 | 0.3845 | 0.125* | |
C16 | 0.8284 (3) | 0.18979 (17) | 0.3927 (2) | 0.0365 (7) | |
N17 | 0.9356 (2) | 0.19637 (14) | 0.33991 (18) | 0.0367 (6) | |
C18 | 1.0363 (3) | 0.14619 (18) | 0.3584 (2) | 0.0412 (8) | |
N19 | 1.0348 (3) | 0.08998 (17) | 0.4253 (2) | 0.0555 (8) | |
C20 | 0.9257 (4) | 0.0853 (2) | 0.4755 (3) | 0.0574 (10) | |
H20 | 0.9215 | 0.0474 | 0.5227 | 0.069* | |
C21 | 0.8188 (3) | 0.13305 (19) | 0.4616 (2) | 0.0424 (8) | |
N22 | 1.1446 (3) | 0.15306 (17) | 0.3042 (2) | 0.0521 (7) | |
C23 | 1.2648 (4) | 0.1067 (3) | 0.3206 (4) | 0.0713 (12) | |
H23A | 1.2512 | 0.0708 | 0.3729 | 0.086* | |
H23B | 1.2824 | 0.0769 | 0.2634 | 0.086* | |
C24 | 1.3790 (4) | 0.1560 (3) | 0.3443 (4) | 0.0766 (13) | |
H24A | 1.3669 | 0.1796 | 0.4066 | 0.092* | |
H24B | 1.4591 | 0.1246 | 0.3486 | 0.092* | |
O25 | 1.3958 (3) | 0.2151 (2) | 0.2743 (2) | 0.0899 (11) | |
C26 | 1.2790 (4) | 0.2613 (3) | 0.2621 (4) | 0.0846 (15) | |
H26A | 1.2934 | 0.2995 | 0.2125 | 0.101* | |
H26B | 1.2632 | 0.2886 | 0.3215 | 0.101* | |
C27 | 1.1609 (4) | 0.2154 (3) | 0.2354 (3) | 0.0649 (11) | |
H27A | 1.0824 | 0.2482 | 0.2343 | 0.078* | |
H27B | 1.1704 | 0.1940 | 0.1716 | 0.078* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0727 (19) | 0.083 (2) | 0.089 (2) | −0.0082 (16) | −0.0313 (16) | −0.0141 (18) |
O2 | 0.127 (3) | 0.079 (2) | 0.0388 (15) | 0.0099 (19) | −0.0027 (15) | 0.0047 (14) |
Br1 | 0.0599 (3) | 0.0763 (3) | 0.0583 (3) | −0.0100 (2) | 0.01681 (19) | 0.0202 (2) |
S2 | 0.0322 (4) | 0.0552 (5) | 0.0482 (5) | 0.0007 (4) | 0.0061 (3) | 0.0165 (4) |
S1 | 0.0729 (7) | 0.0615 (6) | 0.0461 (5) | −0.0010 (5) | −0.0126 (5) | −0.0021 (5) |
Cl1 | 0.0878 (9) | 0.0894 (10) | 0.1623 (15) | 0.0286 (8) | −0.0144 (9) | −0.0113 (9) |
C1 | 0.058 (2) | 0.049 (2) | 0.048 (2) | −0.0077 (17) | −0.0057 (17) | −0.0081 (17) |
C2 | 0.082 (3) | 0.076 (3) | 0.068 (3) | −0.001 (3) | 0.018 (2) | 0.006 (2) |
C3 | 0.069 (3) | 0.091 (4) | 0.096 (4) | 0.000 (3) | 0.018 (3) | −0.014 (3) |
C4 | 0.064 (3) | 0.058 (3) | 0.091 (3) | 0.003 (2) | −0.006 (2) | −0.014 (2) |
C5 | 0.064 (3) | 0.048 (2) | 0.082 (3) | −0.010 (2) | −0.007 (2) | 0.005 (2) |
C6 | 0.057 (2) | 0.054 (2) | 0.063 (2) | −0.0094 (19) | −0.0005 (19) | 0.001 (2) |
N7 | 0.0450 (16) | 0.0564 (18) | 0.0462 (16) | −0.0007 (14) | −0.0001 (13) | 0.0004 (14) |
C8 | 0.0393 (17) | 0.0421 (19) | 0.0405 (18) | 0.0066 (14) | 0.0061 (14) | 0.0035 (14) |
C9 | 0.063 (2) | 0.052 (2) | 0.0365 (18) | 0.0063 (18) | 0.0070 (16) | 0.0057 (16) |
C10 | 0.057 (2) | 0.045 (2) | 0.052 (2) | 0.0012 (17) | 0.0192 (17) | 0.0131 (17) |
C11 | 0.0397 (18) | 0.0387 (19) | 0.060 (2) | 0.0016 (15) | 0.0103 (16) | 0.0091 (16) |
C12 | 0.0398 (17) | 0.044 (2) | 0.0454 (19) | 0.0028 (15) | −0.0019 (15) | 0.0102 (15) |
C13 | 0.0346 (16) | 0.0376 (17) | 0.0426 (18) | 0.0048 (13) | 0.0061 (14) | 0.0103 (14) |
O14 | 0.0573 (15) | 0.0597 (16) | 0.0730 (19) | −0.0169 (13) | 0.0053 (14) | 0.0132 (14) |
C15 | 0.073 (3) | 0.086 (3) | 0.089 (3) | −0.032 (3) | −0.016 (3) | 0.017 (3) |
C16 | 0.0339 (16) | 0.0369 (17) | 0.0384 (17) | −0.0049 (13) | −0.0027 (13) | 0.0033 (14) |
N17 | 0.0300 (13) | 0.0380 (15) | 0.0420 (15) | −0.0040 (11) | −0.0004 (11) | 0.0057 (12) |
C18 | 0.0352 (17) | 0.0381 (18) | 0.050 (2) | −0.0063 (14) | −0.0007 (15) | 0.0013 (15) |
N19 | 0.0500 (17) | 0.0424 (17) | 0.074 (2) | 0.0040 (14) | 0.0052 (16) | 0.0190 (15) |
C20 | 0.060 (2) | 0.047 (2) | 0.065 (2) | −0.0005 (18) | 0.0028 (19) | 0.0229 (19) |
C21 | 0.0440 (18) | 0.0411 (19) | 0.0425 (19) | −0.0075 (15) | 0.0064 (15) | 0.0137 (15) |
N22 | 0.0364 (15) | 0.0505 (18) | 0.070 (2) | 0.0009 (13) | 0.0085 (14) | 0.0098 (16) |
C23 | 0.048 (2) | 0.067 (3) | 0.099 (3) | 0.015 (2) | 0.013 (2) | 0.000 (2) |
C24 | 0.042 (2) | 0.092 (3) | 0.095 (3) | −0.005 (2) | −0.006 (2) | 0.032 (3) |
O25 | 0.0371 (14) | 0.136 (3) | 0.096 (2) | −0.0163 (16) | −0.0023 (14) | 0.056 (2) |
C26 | 0.064 (3) | 0.101 (4) | 0.088 (3) | −0.025 (3) | −0.010 (2) | 0.043 (3) |
C27 | 0.040 (2) | 0.095 (3) | 0.060 (2) | −0.003 (2) | 0.0070 (17) | 0.017 (2) |
O1—S1 | 1.426 (3) | C12—C13 | 1.386 (4) |
O2—S1 | 1.427 (3) | C12—H12 | 0.9300 |
Br1—C21 | 1.894 (3) | O14—C15 | 1.414 (5) |
S2—C16 | 1.765 (3) | C15—H15A | 0.9600 |
S2—C13 | 1.777 (3) | C15—H15B | 0.9600 |
S1—N7 | 1.623 (3) | C15—H15C | 0.9600 |
S1—C1 | 1.777 (4) | C16—N17 | 1.326 (4) |
Cl1—C4 | 1.736 (5) | C16—C21 | 1.379 (4) |
C1—C2 | 1.367 (6) | N17—C18 | 1.351 (4) |
C1—C6 | 1.379 (5) | C18—N19 | 1.347 (4) |
C2—C3 | 1.381 (7) | C18—N22 | 1.348 (4) |
C2—H2 | 0.9300 | N19—C20 | 1.320 (5) |
C3—C4 | 1.368 (7) | C20—C21 | 1.363 (5) |
C3—H3 | 0.9300 | C20—H20 | 0.9300 |
C4—C5 | 1.360 (6) | N22—C27 | 1.455 (5) |
C5—C6 | 1.376 (6) | N22—C23 | 1.461 (5) |
C5—H5 | 0.9300 | C23—C24 | 1.458 (6) |
C6—H6 | 0.9300 | C23—H23A | 0.9700 |
N7—C8 | 1.430 (4) | C23—H23B | 0.9700 |
N7—H7 | 0.8600 | C24—O25 | 1.426 (5) |
C8—C13 | 1.384 (4) | C24—H24A | 0.9700 |
C8—C9 | 1.391 (5) | C24—H24B | 0.9700 |
C9—C10 | 1.374 (5) | O25—C26 | 1.424 (5) |
C9—H9 | 0.9300 | C26—C27 | 1.465 (6) |
C10—C11 | 1.384 (5) | C26—H26A | 0.9700 |
C10—H10 | 0.9300 | C26—H26B | 0.9700 |
C11—O14 | 1.363 (4) | C27—H27A | 0.9700 |
C11—C12 | 1.378 (4) | C27—H27B | 0.9700 |
C16—S2—C13 | 100.11 (14) | O14—C15—H15B | 109.5 |
O1—S1—O2 | 120.05 (19) | H15A—C15—H15B | 109.5 |
O1—S1—N7 | 105.76 (18) | O14—C15—H15C | 109.5 |
O2—S1—N7 | 108.56 (17) | H15A—C15—H15C | 109.5 |
O1—S1—C1 | 108.13 (18) | H15B—C15—H15C | 109.5 |
O2—S1—C1 | 106.19 (19) | N17—C16—C21 | 121.5 (3) |
N7—S1—C1 | 107.62 (16) | N17—C16—S2 | 118.8 (2) |
C2—C1—C6 | 120.8 (4) | C21—C16—S2 | 119.7 (2) |
C2—C1—S1 | 120.1 (3) | C16—N17—C18 | 117.0 (3) |
C6—C1—S1 | 119.1 (3) | N19—C18—N22 | 118.5 (3) |
C1—C2—C3 | 119.6 (4) | N19—C18—N17 | 124.9 (3) |
C1—C2—H2 | 120.2 | N22—C18—N17 | 116.6 (3) |
C3—C2—H2 | 120.2 | C20—N19—C18 | 116.0 (3) |
C4—C3—C2 | 119.0 (4) | N19—C20—C21 | 123.3 (3) |
C4—C3—H3 | 120.5 | N19—C20—H20 | 118.3 |
C2—C3—H3 | 120.5 | C21—C20—H20 | 118.3 |
C5—C4—C3 | 121.7 (4) | C20—C21—C16 | 117.3 (3) |
C5—C4—Cl1 | 118.6 (4) | C20—C21—Br1 | 120.5 (2) |
C3—C4—Cl1 | 119.7 (4) | C16—C21—Br1 | 122.2 (2) |
C4—C5—C6 | 119.6 (4) | C18—N22—C27 | 122.9 (3) |
C4—C5—H5 | 120.2 | C18—N22—C23 | 122.7 (3) |
C6—C5—H5 | 120.2 | C27—N22—C23 | 113.7 (3) |
C5—C6—C1 | 119.3 (4) | C24—C23—N22 | 110.6 (4) |
C5—C6—H6 | 120.4 | C24—C23—H23A | 109.5 |
C1—C6—H6 | 120.4 | N22—C23—H23A | 109.5 |
C8—N7—S1 | 122.6 (2) | C24—C23—H23B | 109.5 |
C8—N7—H7 | 118.7 | N22—C23—H23B | 109.5 |
S1—N7—H7 | 118.7 | H23A—C23—H23B | 108.1 |
C13—C8—C9 | 118.1 (3) | O25—C24—C23 | 112.0 (4) |
C13—C8—N7 | 121.6 (3) | O25—C24—H24A | 109.2 |
C9—C8—N7 | 120.3 (3) | C23—C24—H24A | 109.2 |
C10—C9—C8 | 120.9 (3) | O25—C24—H24B | 109.2 |
C10—C9—H9 | 119.5 | C23—C24—H24B | 109.2 |
C8—C9—H9 | 119.5 | H24A—C24—H24B | 107.9 |
C9—C10—C11 | 120.6 (3) | C26—O25—C24 | 111.7 (3) |
C9—C10—H10 | 119.7 | O25—C26—C27 | 112.4 (4) |
C11—C10—H10 | 119.7 | O25—C26—H26A | 109.1 |
O14—C11—C12 | 124.5 (3) | C27—C26—H26A | 109.1 |
O14—C11—C10 | 116.4 (3) | O25—C26—H26B | 109.1 |
C12—C11—C10 | 119.0 (3) | C27—C26—H26B | 109.1 |
C11—C12—C13 | 120.3 (3) | H26A—C26—H26B | 107.8 |
C11—C12—H12 | 119.9 | N22—C27—C26 | 110.0 (3) |
C13—C12—H12 | 119.9 | N22—C27—H27A | 109.7 |
C8—C13—C12 | 121.0 (3) | C26—C27—H27A | 109.7 |
C8—C13—S2 | 120.8 (2) | N22—C27—H27B | 109.7 |
C12—C13—S2 | 118.1 (2) | C26—C27—H27B | 109.7 |
C11—O14—C15 | 117.3 (3) | H27A—C27—H27B | 108.2 |
O14—C15—H15A | 109.5 | ||
O1—S1—C1—C2 | 132.3 (3) | C11—C12—C13—S2 | −179.8 (2) |
O2—S1—C1—C2 | 2.2 (4) | C16—S2—C13—C8 | 111.6 (3) |
N7—S1—C1—C2 | −113.9 (3) | C16—S2—C13—C12 | −70.9 (3) |
O1—S1—C1—C6 | −45.3 (3) | C12—C11—O14—C15 | −1.2 (5) |
O2—S1—C1—C6 | −175.4 (3) | C10—C11—O14—C15 | 176.6 (4) |
N7—S1—C1—C6 | 68.5 (3) | C13—S2—C16—N17 | −4.3 (3) |
C6—C1—C2—C3 | 2.1 (6) | C13—S2—C16—C21 | 176.6 (3) |
S1—C1—C2—C3 | −175.5 (4) | C21—C16—N17—C18 | −1.6 (4) |
C1—C2—C3—C4 | −0.6 (7) | S2—C16—N17—C18 | 179.3 (2) |
C2—C3—C4—C5 | −1.6 (7) | C16—N17—C18—N19 | 0.8 (5) |
C2—C3—C4—Cl1 | 178.4 (4) | C16—N17—C18—N22 | 179.7 (3) |
C3—C4—C5—C6 | 2.4 (7) | N22—C18—N19—C20 | −179.2 (3) |
Cl1—C4—C5—C6 | −177.6 (3) | N17—C18—N19—C20 | −0.3 (5) |
C4—C5—C6—C1 | −0.9 (6) | C18—N19—C20—C21 | 0.6 (6) |
C2—C1—C6—C5 | −1.3 (6) | N19—C20—C21—C16 | −1.4 (6) |
S1—C1—C6—C5 | 176.3 (3) | N19—C20—C21—Br1 | 178.9 (3) |
O1—S1—N7—C8 | 176.2 (3) | N17—C16—C21—C20 | 1.9 (5) |
O2—S1—N7—C8 | −53.7 (3) | S2—C16—C21—C20 | −179.0 (3) |
C1—S1—N7—C8 | 60.8 (3) | N17—C16—C21—Br1 | −178.3 (2) |
S1—N7—C8—C13 | −121.0 (3) | S2—C16—C21—Br1 | 0.8 (4) |
S1—N7—C8—C9 | 59.7 (4) | N19—C18—N22—C27 | −175.0 (3) |
C13—C8—C9—C10 | 2.0 (5) | N17—C18—N22—C27 | 6.0 (5) |
N7—C8—C9—C10 | −178.7 (3) | N19—C18—N22—C23 | −5.6 (5) |
C8—C9—C10—C11 | −1.4 (5) | N17—C18—N22—C23 | 175.4 (3) |
C9—C10—C11—O14 | −178.8 (3) | C18—N22—C23—C24 | −118.5 (4) |
C9—C10—C11—C12 | −1.0 (5) | C27—N22—C23—C24 | 51.7 (5) |
O14—C11—C12—C13 | −179.6 (3) | N22—C23—C24—O25 | −53.3 (5) |
C10—C11—C12—C13 | 2.8 (5) | C23—C24—O25—C26 | 56.6 (6) |
C9—C8—C13—C12 | −0.2 (5) | C24—O25—C26—C27 | −56.8 (5) |
N7—C8—C13—C12 | −179.5 (3) | C18—N22—C27—C26 | 118.8 (4) |
C9—C8—C13—S2 | 177.3 (2) | C23—N22—C27—C26 | −51.5 (5) |
N7—C8—C13—S2 | −2.0 (4) | O25—C26—C27—N22 | 53.5 (5) |
C11—C12—C13—C8 | −2.2 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
N7—H7···O25i | 0.86 | 2.09 | 2.849 (4) | 148 |
C20—H20···N19ii | 0.93 | 2.52 | 3.352 (5) | 149 |
Symmetry codes: (i) x−1, y, z; (ii) −x+2, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C21H20BrClN4O4S2 |
Mr | 571.89 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 10.0311 (3), 17.3096 (6), 13.9223 (4) |
β (°) | 91.829 (3) |
V (Å3) | 2416.16 (13) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 2.02 |
Crystal size (mm) | 0.3 × 0.2 × 0.2 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur Sapphire3 diffractometer |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2010) |
Tmin, Tmax | 0.438, 0.668 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 26979, 4744, 3408 |
Rint | 0.048 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.117, 1.03 |
No. of reflections | 4744 |
No. of parameters | 299 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.42, −0.65 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2010), CrysAlis RED (Oxford Diffraction, 2010), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N7—H7···O25i | 0.86 | 2.09 | 2.849 (4) | 148 |
C20—H20···N19ii | 0.93 | 2.52 | 3.352 (5) | 149 |
Symmetry codes: (i) x−1, y, z; (ii) −x+2, −y, −z+1. |
Acknowledgements
MK acknowledges the help of Bahubali College of Engineering for his research work. RK acknowledges the Department of Science & Technology for the single-crystal X-ray diffractometer sanctioned as a National Facility under project No. SR/S2/CMP-47/2003.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Bond lengths and angles in the title compound (Fig. 1) have normal values (Allen et al., 1987) and are comparable with the similar crystal structures (Rodrigues et al., 2011; Akkurt et al., 2011; Kant et al., 2012). The molecule is twisted at atom S1 with a C1—S1—N7—C8 torsion angle of 60.8 (3)°. The morpholine ring is exhibiting a chair conformation [asymmetry parameters are: ΔC2(N22—C23) = 2.53; ΔCs(N22—O25) = 1/5; Duax & Norton, 1975]. The two benzene rings (C1—C6/C8—C13) are tilted relative to each other by 70.2 (1)° and the dihedral angle between the sulfur bridged pyrimidine and benzene rings is 69.5 (1)°. The molecular conformation is stabilized by a weak intramolecular stacking interaction between the pyrimidine and the 4-chloro benzene rings [centroid–centroid distance = 3.978 (2) Å, interplanar spacing = 3.340 Å, and centroid shift = 2.16 Å]. In the crystal, molecules are linked into dimers by pairs of C20—H20···N19 hydrogen bonds and these dimers are further linked by N7—H7···O25 hydrogen bonds (Table 1 and Fig. 2).