organic compounds
Monoclinic polymorph of 2,5-dideoxy-2,5-epithio-1,3:4,6-bis-O-[(R)-phenylmethylene]-L-iditol†
aDepartment of Chemistry, Louisiana State University, Baton Rouge, LA 70803-1804, USA
*Correspondence e-mail: ffroncz@lsu.edu
The title compound C20H20O4S, is polymorphic. In the tetragonal form, the molecule lies on a crystallographic twofold axis, while the monoclinic form has only approximate C2 molecular symmetry. The greatest excursion from C2 symmetry is in the orientation of the two phenyl rings; at 100 K, one of the rings is rotated −37.2 (3)° and the other by 46.9 (3)° from their symmetric (tetragonal) positions. There are only minor differences in the three-ring nucleus; the best molecular fit of the tetragonal and monoclinic forms, both at 100 K and excluding phenyl rings and H atoms, shows an r.m.s. deviation of 0.066 Å. Both forms have the same absolute configuration.
Related literature
For details of the synthesis, see: Rao et al. (1988). For the structure of the tetragonal form at 295 K (CCDC refcode WAMRAD), see: Rao et al. (1993); and at 100 K (CCDC refcode 851380), see: Gibson et al. (2011). For a preliminary report of the structures of both polymorphs at room temperature, see: Fronczek et al. (2002). For a description of the Cambridge Structural Database, see: Allen (2002). For the determination of the from Bijvoet pairs, see: Hooft et al. (2008); Flack (1983). For details of the molecular mechanics software used, see: Cambridgesoft (2010); Winn & Goodman (2001).
Experimental
Crystal data
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Data collection: COLLECT (Nonius, 2000); cell DENZO and SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO and SCALEPACK; program(s) used to solve structure: SHELXS86 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999) and IDEAL (Gould et al., 1988).
Supporting information
10.1107/S1600536812034514/mw2079sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812034514/mw2079Isup2.hkl
The title compound was prepared by Dr. Ronald Voll according to the scheme reported by Rao et al. (1988). A suitable single-crystal was obtained by recrystallization from ethanol.
All H atoms were placed in calculated positions, guided by difference maps, with C—H bond distances 0.95 (aromatic C), 0.99 (CH2), 1.00 Å, (R3CH) and Uiso=1.2Ueq, thereafter refined as riding. The
based on 2730 Bijvoet pairs with x = 0.02 (5), Hooft parameter y = 0.00 (3) and Hooft P2(true) = 1.000, is consistent with that of the starting materials.Data collection: COLLECT (Nonius, 2000); cell
DENZO and SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO and SCALEPACK (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXS86 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999) and IDEAL (Gould et al., 1988).C20H20O4S | F(000) = 376 |
Mr = 356.42 | Dx = 1.36 Mg m−3 |
Monoclinic, P21 | Melting point: 481.5(5) K |
Hall symbol: P 2yb | Mo Kα radiation, λ = 0.71073 Å |
a = 6.158 (1) Å | Cell parameters from 3254 reflections |
b = 9.223 (2) Å | θ = 2.5–33.1° |
c = 15.407 (4) Å | µ = 0.21 mm−1 |
β = 95.785 (8)° | T = 100 K |
V = 870.6 (3) Å3 | Lath, colorless |
Z = 2 | 0.25 × 0.22 × 0.10 mm |
Nonius KappaCCD diffractometer | 6225 independent reflections |
Radiation source: sealed tube | 5648 reflections with I > 2σ(I) |
Horizonally mounted graphite crystal monochromator | Rint = 0 |
Detector resolution: 9 pixels mm-1 | θmax = 33.1°, θmin = 2.6° |
ω and ϕ scans | h = −9→9 |
Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997) | k = −14→13 |
Tmin = 0.950, Tmax = 0.980 | l = 0→23 |
6225 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.037 | H-atom parameters constrained |
wR(F2) = 0.088 | w = 1/[σ2(Fo2) + (0.0366P)2 + 0.1562P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max = 0.001 |
6225 reflections | Δρmax = 0.29 e Å−3 |
227 parameters | Δρmin = −0.23 e Å−3 |
1 restraint | Absolute structure: Flack (1983), 2730 Bijvoet pairs |
0 constraints | Absolute structure parameter: 0.02 (5) |
Primary atom site location: structure-invariant direct methods |
C20H20O4S | V = 870.6 (3) Å3 |
Mr = 356.42 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 6.158 (1) Å | µ = 0.21 mm−1 |
b = 9.223 (2) Å | T = 100 K |
c = 15.407 (4) Å | 0.25 × 0.22 × 0.10 mm |
β = 95.785 (8)° |
Nonius KappaCCD diffractometer | 6225 independent reflections |
Absorption correction: multi-scan (SCALEPACK; Otwinowski & Minor, 1997) | 5648 reflections with I > 2σ(I) |
Tmin = 0.950, Tmax = 0.980 | Rint = 0 |
6225 measured reflections |
R[F2 > 2σ(F2)] = 0.037 | H-atom parameters constrained |
wR(F2) = 0.088 | Δρmax = 0.29 e Å−3 |
S = 1.05 | Δρmin = −0.23 e Å−3 |
6225 reflections | Absolute structure: Flack (1983), 2730 Bijvoet pairs |
227 parameters | Absolute structure parameter: 0.02 (5) |
1 restraint |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.7808 (2) | 0.62050 (15) | 0.17832 (8) | 0.0169 (2) | |
H1 | 0.7275 | 0.5554 | 0.1288 | 0.02* | |
C2 | 0.6502 (2) | 0.76146 (15) | 0.17125 (8) | 0.0163 (2) | |
H2 | 0.4915 | 0.7418 | 0.1554 | 0.02* | |
C3 | 0.7424 (2) | 0.85423 (15) | 0.10263 (8) | 0.0161 (2) | |
H3 | 0.681 | 0.9546 | 0.1024 | 0.019* | |
C4 | 0.9911 (2) | 0.85639 (15) | 0.12534 (8) | 0.0168 (2) | |
H4 | 1.0276 | 0.9279 | 0.1734 | 0.02* | |
C5 | 1.1053 (2) | 0.90189 (16) | 0.04642 (9) | 0.0212 (3) | |
H5A | 1.086 | 1.0075 | 0.0369 | 0.025* | |
H5B | 1.2636 | 0.8822 | 0.058 | 0.025* | |
C6 | 0.7929 (2) | 0.84807 (15) | −0.04585 (8) | 0.0167 (2) | |
H6 | 0.7622 | 0.9546 | −0.0476 | 0.02* | |
C7 | 0.7107 (2) | 0.78161 (14) | −0.13235 (8) | 0.0172 (2) | |
C8 | 0.4961 (2) | 0.73435 (15) | −0.14903 (9) | 0.0198 (2) | |
H8 | 0.3999 | 0.7395 | −0.1047 | 0.024* | |
C9 | 0.4225 (2) | 0.67920 (18) | −0.23124 (8) | 0.0229 (2) | |
H9 | 0.2771 | 0.6445 | −0.2422 | 0.027* | |
C10 | 0.5608 (2) | 0.67481 (19) | −0.29699 (8) | 0.0259 (3) | |
H10 | 0.509 | 0.6391 | −0.3531 | 0.031* | |
C11 | 0.7744 (3) | 0.72253 (17) | −0.28063 (9) | 0.0279 (3) | |
H11 | 0.8695 | 0.7192 | −0.3255 | 0.033* | |
C12 | 0.8496 (2) | 0.77535 (16) | −0.19836 (9) | 0.0232 (3) | |
H12 | 0.9964 | 0.8073 | −0.1872 | 0.028* | |
C13 | 0.7489 (2) | 0.54497 (15) | 0.26421 (8) | 0.0197 (2) | |
H13A | 0.5992 | 0.5049 | 0.2613 | 0.024* | |
H13B | 0.853 | 0.4633 | 0.2733 | 0.024* | |
C14 | 0.6415 (2) | 0.76351 (14) | 0.32492 (8) | 0.0161 (2) | |
H14 | 0.4857 | 0.7313 | 0.3201 | 0.019* | |
C15 | 0.6900 (2) | 0.85965 (15) | 0.40299 (8) | 0.0168 (2) | |
C16 | 0.5382 (2) | 0.87628 (16) | 0.46339 (9) | 0.0204 (3) | |
H16 | 0.4012 | 0.8282 | 0.4547 | 0.025* | |
C17 | 0.5876 (3) | 0.96367 (17) | 0.53664 (9) | 0.0252 (3) | |
H17 | 0.4838 | 0.9756 | 0.5777 | 0.03* | |
C18 | 0.7877 (3) | 1.03315 (17) | 0.54964 (9) | 0.0255 (3) | |
H18 | 0.8216 | 1.0916 | 0.5999 | 0.031* | |
C19 | 0.9390 (2) | 1.01740 (18) | 0.48917 (9) | 0.0263 (3) | |
H19 | 1.0756 | 1.0658 | 0.4979 | 0.032* | |
C20 | 0.8902 (2) | 0.93077 (17) | 0.41595 (9) | 0.0225 (3) | |
H20 | 0.9937 | 0.92 | 0.3746 | 0.027* | |
O1 | 1.02017 (15) | 0.82585 (11) | −0.03065 (6) | 0.01980 (19) | |
O2 | 0.68339 (15) | 0.78354 (10) | 0.02114 (5) | 0.01686 (18) | |
O3 | 0.68371 (15) | 0.84402 (11) | 0.24980 (6) | 0.01752 (18) | |
O4 | 0.78222 (15) | 0.64292 (10) | 0.33617 (6) | 0.01824 (19) | |
S1 | 1.06220 (5) | 0.67372 (4) | 0.16652 (2) | 0.01900 (7) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0184 (6) | 0.0173 (6) | 0.0159 (5) | −0.0023 (4) | 0.0049 (4) | −0.0009 (4) |
C2 | 0.0156 (6) | 0.0206 (6) | 0.0127 (5) | 0.0006 (4) | 0.0016 (4) | −0.0001 (4) |
C3 | 0.0186 (5) | 0.0169 (6) | 0.0130 (5) | 0.0019 (5) | 0.0022 (4) | 0.0002 (4) |
C4 | 0.0191 (5) | 0.0158 (6) | 0.0153 (5) | −0.0015 (5) | 0.0009 (4) | 0.0016 (4) |
C5 | 0.0204 (6) | 0.0236 (7) | 0.0196 (6) | −0.0057 (5) | 0.0024 (5) | 0.0012 (5) |
C6 | 0.0190 (5) | 0.0181 (6) | 0.0135 (5) | −0.0011 (5) | 0.0035 (4) | 0.0022 (4) |
C7 | 0.0232 (6) | 0.0146 (6) | 0.0139 (5) | −0.0006 (5) | 0.0029 (4) | 0.0016 (4) |
C8 | 0.0241 (6) | 0.0181 (6) | 0.0176 (5) | −0.0016 (5) | 0.0036 (5) | 0.0002 (5) |
C9 | 0.0290 (6) | 0.0186 (6) | 0.0203 (5) | −0.0035 (6) | −0.0009 (5) | −0.0014 (5) |
C10 | 0.0401 (7) | 0.0211 (6) | 0.0165 (5) | −0.0059 (7) | 0.0020 (5) | −0.0034 (6) |
C11 | 0.0402 (8) | 0.0282 (8) | 0.0168 (6) | −0.0065 (6) | 0.0107 (5) | −0.0039 (5) |
C12 | 0.0278 (7) | 0.0255 (7) | 0.0175 (6) | −0.0051 (5) | 0.0073 (5) | −0.0010 (5) |
C13 | 0.0287 (7) | 0.0148 (6) | 0.0164 (5) | −0.0010 (5) | 0.0070 (5) | −0.0002 (4) |
C14 | 0.0169 (5) | 0.0195 (6) | 0.0123 (5) | 0.0018 (4) | 0.0037 (4) | −0.0004 (4) |
C15 | 0.0203 (6) | 0.0174 (6) | 0.0127 (5) | 0.0036 (5) | 0.0009 (4) | 0.0010 (4) |
C16 | 0.0218 (6) | 0.0214 (7) | 0.0187 (6) | 0.0012 (5) | 0.0048 (5) | −0.0010 (5) |
C17 | 0.0307 (7) | 0.0272 (8) | 0.0184 (6) | 0.0033 (6) | 0.0067 (5) | −0.0028 (5) |
C18 | 0.0309 (7) | 0.0258 (7) | 0.0190 (6) | 0.0045 (6) | −0.0013 (5) | −0.0060 (5) |
C19 | 0.0222 (7) | 0.0315 (8) | 0.0244 (7) | −0.0006 (6) | −0.0018 (5) | −0.0061 (6) |
C20 | 0.0200 (6) | 0.0290 (7) | 0.0189 (6) | 0.0003 (5) | 0.0032 (5) | −0.0045 (5) |
O1 | 0.0184 (4) | 0.0243 (5) | 0.0173 (4) | −0.0027 (4) | 0.0045 (3) | −0.0002 (3) |
O2 | 0.0193 (4) | 0.0209 (5) | 0.0107 (4) | −0.0027 (3) | 0.0031 (3) | 0.0004 (3) |
O3 | 0.0244 (5) | 0.0167 (4) | 0.0119 (4) | 0.0027 (4) | 0.0038 (3) | 0.0003 (3) |
O4 | 0.0243 (4) | 0.0164 (5) | 0.0139 (4) | 0.0029 (3) | 0.0017 (3) | −0.0001 (3) |
S1 | 0.01709 (13) | 0.01938 (15) | 0.02103 (13) | 0.00212 (12) | 0.00436 (10) | 0.00274 (12) |
C1—C13 | 1.5256 (18) | C9—H9 | 0.95 |
C1—C2 | 1.5266 (19) | C10—C11 | 1.386 (2) |
C1—S1 | 1.8279 (13) | C10—H10 | 0.95 |
C1—H1 | 1 | C11—C12 | 1.3928 (19) |
C2—O3 | 1.4271 (15) | C11—H11 | 0.95 |
C2—C3 | 1.5144 (18) | C12—H12 | 0.95 |
C2—H2 | 1 | C13—O4 | 1.4287 (16) |
C3—O2 | 1.4288 (15) | C13—H13A | 0.99 |
C3—C4 | 1.5360 (18) | C13—H13B | 0.99 |
C3—H3 | 1 | C14—O4 | 1.4100 (15) |
C4—C5 | 1.5236 (19) | C14—O3 | 1.4211 (15) |
C4—S1 | 1.8376 (14) | C14—C15 | 1.5000 (17) |
C4—H4 | 1 | C14—H14 | 1 |
C5—O1 | 1.4322 (16) | C15—C16 | 1.3925 (18) |
C5—H5A | 0.99 | C15—C20 | 1.3928 (19) |
C5—H5B | 0.99 | C16—C17 | 1.3952 (19) |
C6—O1 | 1.4103 (16) | C16—H16 | 0.95 |
C6—O2 | 1.4195 (15) | C17—C18 | 1.386 (2) |
C6—C7 | 1.5073 (18) | C17—H17 | 0.95 |
C6—H6 | 1 | C18—C19 | 1.390 (2) |
C7—C8 | 1.3907 (19) | C18—H18 | 0.95 |
C7—C12 | 1.3945 (19) | C19—C20 | 1.390 (2) |
C8—C9 | 1.3974 (18) | C19—H19 | 0.95 |
C8—H8 | 0.95 | C20—H20 | 0.95 |
C9—C10 | 1.3879 (19) | ||
C13—C1—C2 | 109.75 (11) | C11—C10—C9 | 119.92 (12) |
C13—C1—S1 | 114.52 (9) | C11—C10—H10 | 120 |
C2—C1—S1 | 105.18 (9) | C9—C10—H10 | 120 |
C13—C1—H1 | 109.1 | C10—C11—C12 | 119.93 (13) |
C2—C1—H1 | 109.1 | C10—C11—H11 | 120 |
S1—C1—H1 | 109.1 | C12—C11—H11 | 120 |
O3—C2—C3 | 104.97 (10) | C11—C12—C7 | 120.40 (14) |
O3—C2—C1 | 111.34 (10) | C11—C12—H12 | 119.8 |
C3—C2—C1 | 107.41 (11) | C7—C12—H12 | 119.8 |
O3—C2—H2 | 111 | O4—C13—C1 | 111.31 (11) |
C3—C2—H2 | 111 | O4—C13—H13A | 109.4 |
C1—C2—H2 | 111 | C1—C13—H13A | 109.4 |
O2—C3—C2 | 105.99 (10) | O4—C13—H13B | 109.4 |
O2—C3—C4 | 111.45 (10) | C1—C13—H13B | 109.4 |
C2—C3—C4 | 106.47 (10) | H13A—C13—H13B | 108 |
O2—C3—H3 | 110.9 | O4—C14—O3 | 110.58 (10) |
C2—C3—H3 | 110.9 | O4—C14—C15 | 107.30 (10) |
C4—C3—H3 | 110.9 | O3—C14—C15 | 107.83 (11) |
C5—C4—C3 | 110.57 (10) | O4—C14—H14 | 110.4 |
C5—C4—S1 | 114.52 (10) | O3—C14—H14 | 110.4 |
C3—C4—S1 | 105.32 (9) | C15—C14—H14 | 110.4 |
C5—C4—H4 | 108.8 | C16—C15—C20 | 119.77 (12) |
C3—C4—H4 | 108.8 | C16—C15—C14 | 120.53 (12) |
S1—C4—H4 | 108.8 | C20—C15—C14 | 119.69 (12) |
O1—C5—C4 | 111.54 (11) | C15—C16—C17 | 119.85 (14) |
O1—C5—H5A | 109.3 | C15—C16—H16 | 120.1 |
C4—C5—H5A | 109.3 | C17—C16—H16 | 120.1 |
O1—C5—H5B | 109.3 | C18—C17—C16 | 120.16 (14) |
C4—C5—H5B | 109.3 | C18—C17—H17 | 119.9 |
H5A—C5—H5B | 108 | C16—C17—H17 | 119.9 |
O1—C6—O2 | 110.77 (10) | C17—C18—C19 | 120.07 (13) |
O1—C6—C7 | 109.08 (11) | C17—C18—H18 | 120 |
O2—C6—C7 | 109.30 (11) | C19—C18—H18 | 120 |
O1—C6—H6 | 109.2 | C18—C19—C20 | 119.97 (14) |
O2—C6—H6 | 109.2 | C18—C19—H19 | 120 |
C7—C6—H6 | 109.2 | C20—C19—H19 | 120 |
C8—C7—C12 | 119.57 (12) | C19—C20—C15 | 120.17 (13) |
C8—C7—C6 | 121.27 (12) | C19—C20—H20 | 119.9 |
C12—C7—C6 | 119.06 (12) | C15—C20—H20 | 119.9 |
C7—C8—C9 | 119.79 (12) | C6—O1—C5 | 109.91 (10) |
C7—C8—H8 | 120.1 | C6—O2—C3 | 110.49 (10) |
C9—C8—H8 | 120.1 | C14—O3—C2 | 112.91 (10) |
C10—C9—C8 | 120.36 (13) | C14—O4—C13 | 111.41 (9) |
C10—C9—H9 | 119.8 | C1—S1—C4 | 94.89 (6) |
C8—C9—H9 | 119.8 | ||
C13—C1—C2—O3 | 47.28 (14) | O3—C14—C15—C16 | 129.50 (12) |
S1—C1—C2—O3 | −76.39 (11) | O4—C14—C15—C20 | 67.48 (15) |
C13—C1—C2—C3 | 161.68 (10) | O3—C14—C15—C20 | −51.66 (15) |
S1—C1—C2—C3 | 38.02 (11) | C20—C15—C16—C17 | −0.2 (2) |
O3—C2—C3—O2 | −172.01 (9) | C14—C15—C16—C17 | 178.65 (12) |
C1—C2—C3—O2 | 69.39 (12) | C15—C16—C17—C18 | −0.4 (2) |
O3—C2—C3—C4 | 69.21 (12) | C16—C17—C18—C19 | 0.8 (2) |
C1—C2—C3—C4 | −49.39 (13) | C17—C18—C19—C20 | −0.6 (2) |
O2—C3—C4—C5 | 45.85 (15) | C18—C19—C20—C15 | 0.0 (2) |
C2—C3—C4—C5 | 160.99 (11) | C16—C15—C20—C19 | 0.4 (2) |
O2—C3—C4—S1 | −78.37 (11) | C14—C15—C20—C19 | −178.47 (13) |
C2—C3—C4—S1 | 36.77 (11) | O2—C6—O1—C5 | −66.02 (13) |
C3—C4—C5—O1 | −46.70 (16) | C7—C6—O1—C5 | 173.64 (10) |
S1—C4—C5—O1 | 72.07 (13) | C4—C5—O1—C6 | 56.52 (14) |
O1—C6—C7—C8 | 153.67 (12) | O1—C6—O2—C3 | 65.43 (13) |
O2—C6—C7—C8 | 32.42 (17) | C7—C6—O2—C3 | −174.35 (10) |
O1—C6—C7—C12 | −30.07 (16) | C2—C3—O2—C6 | −170.15 (10) |
O2—C6—C7—C12 | −151.31 (12) | C4—C3—O2—C6 | −54.71 (13) |
C12—C7—C8—C9 | 0.9 (2) | O4—C14—O3—C2 | 60.93 (13) |
C6—C7—C8—C9 | 177.15 (13) | C15—C14—O3—C2 | 177.96 (10) |
C7—C8—C9—C10 | −1.7 (2) | C3—C2—O3—C14 | −169.74 (10) |
C8—C9—C10—C11 | 1.4 (3) | C1—C2—O3—C14 | −53.83 (13) |
C9—C10—C11—C12 | −0.3 (2) | O3—C14—O4—C13 | −62.23 (13) |
C10—C11—C12—C7 | −0.5 (2) | C15—C14—O4—C13 | −179.58 (10) |
C8—C7—C12—C11 | 0.2 (2) | C1—C13—O4—C14 | 57.33 (14) |
C6—C7—C12—C11 | −176.16 (13) | C13—C1—S1—C4 | −134.53 (10) |
C2—C1—C13—O4 | −49.24 (15) | C2—C1—S1—C4 | −13.96 (9) |
S1—C1—C13—O4 | 68.77 (13) | C5—C4—S1—C1 | −134.60 (10) |
O4—C14—C15—C16 | −111.36 (13) | C3—C4—S1—C1 | −12.90 (9) |
Experimental details
Crystal data | |
Chemical formula | C20H20O4S |
Mr | 356.42 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 100 |
a, b, c (Å) | 6.158 (1), 9.223 (2), 15.407 (4) |
β (°) | 95.785 (8) |
V (Å3) | 870.6 (3) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.21 |
Crystal size (mm) | 0.25 × 0.22 × 0.10 |
Data collection | |
Diffractometer | Nonius KappaCCD diffractometer |
Absorption correction | Multi-scan (SCALEPACK; Otwinowski & Minor, 1997) |
Tmin, Tmax | 0.950, 0.980 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6225, 6225, 5648 |
Rint | 0 |
(sin θ/λ)max (Å−1) | 0.769 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.037, 0.088, 1.05 |
No. of reflections | 6225 |
No. of parameters | 227 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.29, −0.23 |
Absolute structure | Flack (1983), 2730 Bijvoet pairs |
Absolute structure parameter | 0.02 (5) |
Computer programs: COLLECT (Nonius, 2000), DENZO and SCALEPACK (Otwinowski & Minor, 1997), SHELXS86 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999) and IDEAL (Gould et al., 1988).
Footnotes
†CAS: 151061-72-2.
Acknowledgements
Purchase of the diffractometer was made possible by grant No. LEQSF(1999–2000)-ENH-TR-13, administered by the Louisiana Board of Regents. We thank Dr Ronald Voll for providing the sample.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The tetragonal form of the title compound (I), C20H20O4S, was determined at 295 K (Rao et al., 1993, hereinafter P4295). We re-examined the tetragonal form at 100 K in our laboratory (hereinafter P4100) and determined the absolute configuration. These data are deposited at the Cambridge Crystallographic Data Centre (Allen, 2002), CCDC 851380 (Gibson et al., 2011). There is a 2.8% volume decrease upon lowering the temperature from 295 K to 100 K but the molecular symmetry is C2 at both temperatures and there is no significant change in molecular structure. The best molecular fit (Gould et al., 1988) of all non-H atoms in P4295 and P4100 yields δr.m.s. = 0.022 Å, while excluding the phenyl groups yields δr.m.s. = 0.011 Å.
In the monoclinic form at 100 K (P2100) the molecular symmetry is C1. The molecular volume of P2100 (435.2 (3) Å3/molecule) is greater than P4100 (433.6 (1) Å3/molecule). The thirteen non-H atoms of the three central rings in P2100 and P4100 are arranged similarly with best molecular fit δr.m.s. = 0.066 Å. The most pronounced structural difference between P2100 and P4100 is in the orientation of the phenyl rings. In P4100, two equivalent O—C—C—C torsions of -14.5 (3)° become +32.4 (2)° and -51.7 (2)° in P2100. The global minimum conformation of this molecule has been calculated using MM2 (Winn & Goodman, 2001) and confirmed by us (Cambridgesoft, 2010). Like the tetragonal form, the minimum conformation has C2 symmetry, but the two equivalent O—C—C—C torsions representing the orientation of the phenyl rings are -56°.
Based on the Flack parameter x = 0.02 (5) (Flack, 1983) and Hooft parameters y = 0.00 (3) and P2(true) = 1.000 for 2730 Bijvoet pairs (Hooft et al., 2008), the absolute configurations of the tetragonal and monoclinic forms are identical at 100 K, with stereochemical specification (2R,4aS,5aS,8R,9aS,9bS)-2,8-diphenylhexahydrothieno[3,2 - d:4,5 - d'] bis([1,3]dioxine).