organic compounds
2-Amino-6-(quinoline-2-carboxamido)pyridinium nitrate
aDepartment of Chemistry, University of the Free State, PO Box 339, Bloemfontein 9300, South Africa
*Correspondence e-mail: vanderbergpcw@ufs.ac.za
In the title salt, C15H13N4O+·NO3−, an extensive network of N—H⋯N, N—H⋯O and C—H⋯O hydrogen-bond interactions are observed throughout the structure. Further stabilization is obtained by π–π stacking interactions between inversion-related quinoline systems and inversion-related pyridine rings, with respective centroid–centroid distances of 3.5866 (6) and 3.3980 (6) Å.
Related literature
For related radiopharmaceutical structures, see: Al-Dajani et al. (2010); Jain et al. (2004); Van der Berg et al. (2011).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2011); cell SAINT-Plus (Bruker, 2008); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Putz, 2005); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536812036562/pk2439sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812036562/pk2439Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812036562/pk2439Isup3.cml
Under oxygen atmosphere: Quinaldic acid (0.8013 g, 4.627 mmol) was added as a solid in one portion to a suspension of 2,6-diaminopyridine (0.5000 g, 4.582 mmol) in pyridine (10 ml) and the mixture was stirred at 40 °C for 40 min. Triphenylphosphite (10 ml) was added dropwise over 10 minutes, after which the temperature was increased to 90–100 °C and stirred for a further 24 h. On cooling the precipitate was filtered, washed with H2O (50 ml) and then MeOH (50 ml). The product was dissolved in diluted HNO3 and left to stand at room temperature. Yellow crystals were obtained after five days.
The N-bound hydrogen atoms were located in a difference Fourier map and refined freely. The remaining H atoms were placed in geometrically idealized positions at C—H = 0.93 Å, respectively and constrained to ride on their parent atoms, with Uiso(H) = 1.2Ueq(C).
Data collection: APEX2 (Bruker, 2011); cell
SAINT-Plus (Bruker, 2008); data reduction: SAINT-Plus (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Putz, 2005); software used to prepare material for publication: WinGX (Farrugia, 1999).Fig. 1. Representation of the title compound, showing displacement ellipsoids (50% probability). Fig. 2. Packing and illustration of π-π stacking in the crystal. |
C15H13N4O+·NO3− | F(000) = 680 |
Mr = 327.30 | Dx = 1.523 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 9936 reflections |
a = 8.183 (2) Å | θ = 2.2–28.3° |
b = 11.768 (3) Å | µ = 0.12 mm−1 |
c = 14.979 (4) Å | T = 100 K |
β = 98.37 (1)° | Cuboid, yellow |
V = 1427.1 (6) Å3 | 0.49 × 0.41 × 0.31 mm |
Z = 4 |
Bruker X8 APEXII KappaCCD diffractometer | 3555 independent reflections |
Radiation source: sealed tube | 3180 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.023 |
ϕ and ω scans | θmax = 28.4°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | h = −10→10 |
Tmin = 0.990, Tmax = 0.994 | k = −15→15 |
26710 measured reflections | l = −19→19 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.035 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.1 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0537P)2 + 0.6672P] where P = (Fo2 + 2Fc2)/3 |
3555 reflections | (Δ/σ)max = 0.001 |
233 parameters | Δρmax = 0.42 e Å−3 |
0 restraints | Δρmin = −0.25 e Å−3 |
C15H13N4O+·NO3− | V = 1427.1 (6) Å3 |
Mr = 327.30 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 8.183 (2) Å | µ = 0.12 mm−1 |
b = 11.768 (3) Å | T = 100 K |
c = 14.979 (4) Å | 0.49 × 0.41 × 0.31 mm |
β = 98.37 (1)° |
Bruker X8 APEXII KappaCCD diffractometer | 3555 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 3180 reflections with I > 2σ(I) |
Tmin = 0.990, Tmax = 0.994 | Rint = 0.023 |
26710 measured reflections |
R[F2 > 2σ(F2)] = 0.035 | 0 restraints |
wR(F2) = 0.1 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.42 e Å−3 |
3555 reflections | Δρmin = −0.25 e Å−3 |
233 parameters |
Experimental. The intensity data were collected on a Bruker X8 ApexII 4 K Kappa CCD diffractometer using an exposure time of 30 s/frame. A total of 1759 frames were collected with a frame width of 0.5° covering up to θ = 28.28° with 100.00% completeness accomplished. |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C5 | 0.44014 (13) | 0.29849 (9) | 1.00107 (7) | 0.0136 (2) | |
C4 | 0.36313 (14) | 0.35271 (9) | 0.92503 (7) | 0.0165 (2) | |
H4 | 0.3674 | 0.323 | 0.8679 | 0.02* | |
C3 | 0.27835 (14) | 0.45365 (10) | 0.93606 (8) | 0.0190 (2) | |
H3 | 0.2243 | 0.4909 | 0.8854 | 0.023* | |
C2 | 0.27319 (14) | 0.49912 (10) | 1.02018 (8) | 0.0191 (2) | |
H2 | 0.2165 | 0.5665 | 1.0263 | 0.023* | |
C1 | 0.35435 (13) | 0.44278 (9) | 1.09694 (8) | 0.0161 (2) | |
C6 | 0.61016 (12) | 0.13855 (9) | 1.06647 (7) | 0.0130 (2) | |
C7 | 0.70961 (12) | 0.03990 (9) | 1.04078 (7) | 0.0128 (2) | |
C8 | 0.80954 (13) | −0.01866 (9) | 1.11085 (7) | 0.0148 (2) | |
H8 | 0.812 | 0.0028 | 1.1708 | 0.018* | |
C9 | 0.90254 (13) | −0.10779 (9) | 1.08810 (7) | 0.0156 (2) | |
H9 | 0.9709 | −0.1475 | 1.1325 | 0.019* | |
C10 | 0.89350 (13) | −0.13878 (9) | 0.99620 (7) | 0.0143 (2) | |
C11 | 0.98613 (14) | −0.23014 (10) | 0.96740 (8) | 0.0182 (2) | |
H11 | 1.0548 | −0.2727 | 1.0098 | 0.022* | |
C12 | 0.97515 (14) | −0.25610 (10) | 0.87763 (8) | 0.0208 (2) | |
H12 | 1.0371 | −0.3157 | 0.8593 | 0.025* | |
C13 | 0.86987 (14) | −0.19264 (10) | 0.81263 (8) | 0.0196 (2) | |
H13 | 0.8633 | −0.2111 | 0.7518 | 0.024* | |
C14 | 0.77756 (14) | −0.10438 (9) | 0.83805 (7) | 0.0165 (2) | |
H14 | 0.7078 | −0.064 | 0.7947 | 0.02* | |
C15 | 0.78850 (13) | −0.07462 (9) | 0.93054 (7) | 0.0133 (2) | |
N1 | 0.36061 (13) | 0.48153 (9) | 1.18100 (7) | 0.0199 (2) | |
N2 | 0.43161 (11) | 0.34266 (8) | 1.08430 (6) | 0.01391 (19) | |
N3 | 0.53164 (11) | 0.20051 (8) | 0.99536 (6) | 0.01377 (19) | |
N4 | 0.69803 (11) | 0.01543 (7) | 0.95409 (6) | 0.01317 (18) | |
N5 | 0.68666 (12) | 0.29972 (8) | 1.29263 (6) | 0.01620 (19) | |
O1 | 0.60217 (10) | 0.16082 (7) | 1.14574 (5) | 0.01639 (17) | |
O2 | 0.75498 (11) | 0.36208 (7) | 1.24246 (6) | 0.0224 (2) | |
O3 | 0.53418 (10) | 0.31398 (7) | 1.29794 (5) | 0.01974 (18) | |
O4 | 0.76463 (11) | 0.22297 (7) | 1.33845 (6) | 0.0228 (2) | |
H1B | 0.326 (2) | 0.5477 (16) | 1.1861 (12) | 0.033 (4)* | |
H1A | 0.423 (2) | 0.4444 (15) | 1.2254 (12) | 0.031 (4)* | |
H2A | 0.481 (2) | 0.3072 (15) | 1.1296 (12) | 0.032 (4)* | |
H3A | 0.5452 (19) | 0.1790 (14) | 0.9423 (11) | 0.026 (4)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C5 | 0.0144 (4) | 0.0117 (5) | 0.0151 (5) | −0.0008 (4) | 0.0036 (4) | −0.0006 (4) |
C4 | 0.0196 (5) | 0.0159 (5) | 0.0139 (5) | 0.0001 (4) | 0.0027 (4) | 0.0000 (4) |
C3 | 0.0215 (5) | 0.0168 (5) | 0.0182 (5) | 0.0031 (4) | 0.0017 (4) | 0.0045 (4) |
C2 | 0.0230 (5) | 0.0134 (5) | 0.0212 (6) | 0.0051 (4) | 0.0045 (4) | 0.0017 (4) |
C1 | 0.0182 (5) | 0.0131 (5) | 0.0178 (5) | 0.0006 (4) | 0.0060 (4) | −0.0002 (4) |
C6 | 0.0127 (4) | 0.0112 (5) | 0.0152 (5) | −0.0015 (4) | 0.0018 (4) | −0.0011 (4) |
C7 | 0.0125 (5) | 0.0111 (4) | 0.0151 (5) | −0.0010 (3) | 0.0027 (4) | −0.0007 (4) |
C8 | 0.0152 (5) | 0.0165 (5) | 0.0129 (5) | −0.0006 (4) | 0.0025 (4) | −0.0002 (4) |
C9 | 0.0141 (5) | 0.0165 (5) | 0.0158 (5) | 0.0010 (4) | 0.0006 (4) | 0.0031 (4) |
C10 | 0.0125 (5) | 0.0130 (5) | 0.0177 (5) | −0.0005 (4) | 0.0034 (4) | 0.0004 (4) |
C11 | 0.0164 (5) | 0.0160 (5) | 0.0219 (6) | 0.0037 (4) | 0.0018 (4) | 0.0007 (4) |
C12 | 0.0198 (5) | 0.0165 (5) | 0.0268 (6) | 0.0041 (4) | 0.0062 (4) | −0.0045 (4) |
C13 | 0.0223 (5) | 0.0198 (5) | 0.0173 (5) | 0.0010 (4) | 0.0049 (4) | −0.0043 (4) |
C14 | 0.0191 (5) | 0.0153 (5) | 0.0150 (5) | 0.0006 (4) | 0.0018 (4) | −0.0003 (4) |
C15 | 0.0130 (4) | 0.0115 (5) | 0.0156 (5) | −0.0008 (3) | 0.0035 (4) | −0.0001 (4) |
N1 | 0.0288 (5) | 0.0151 (5) | 0.0166 (5) | 0.0058 (4) | 0.0059 (4) | −0.0011 (4) |
N2 | 0.0171 (4) | 0.0119 (4) | 0.0129 (4) | 0.0021 (3) | 0.0027 (3) | 0.0005 (3) |
N3 | 0.0175 (4) | 0.0120 (4) | 0.0122 (4) | 0.0018 (3) | 0.0033 (3) | −0.0009 (3) |
N4 | 0.0142 (4) | 0.0111 (4) | 0.0144 (4) | −0.0003 (3) | 0.0026 (3) | −0.0008 (3) |
N5 | 0.0221 (5) | 0.0142 (4) | 0.0121 (4) | −0.0034 (3) | 0.0016 (3) | −0.0018 (3) |
O1 | 0.0202 (4) | 0.0155 (4) | 0.0133 (4) | 0.0019 (3) | 0.0020 (3) | −0.0023 (3) |
O2 | 0.0317 (5) | 0.0184 (4) | 0.0195 (4) | −0.0055 (3) | 0.0111 (3) | 0.0005 (3) |
O3 | 0.0196 (4) | 0.0234 (4) | 0.0163 (4) | −0.0020 (3) | 0.0031 (3) | −0.0002 (3) |
O4 | 0.0269 (4) | 0.0182 (4) | 0.0206 (4) | −0.0006 (3) | −0.0052 (3) | 0.0025 (3) |
C5—N2 | 1.3618 (14) | C9—H9 | 0.93 |
C5—C4 | 1.3758 (15) | C10—C11 | 1.4183 (15) |
C5—N3 | 1.3842 (13) | C10—C15 | 1.4246 (15) |
C4—C3 | 1.3974 (15) | C11—C12 | 1.3690 (17) |
C4—H4 | 0.93 | C11—H11 | 0.93 |
C3—C2 | 1.3753 (16) | C12—C13 | 1.4156 (17) |
C3—H3 | 0.93 | C12—H12 | 0.93 |
C2—C1 | 1.4073 (16) | C13—C14 | 1.3704 (15) |
C2—H2 | 0.93 | C13—H13 | 0.93 |
C1—N1 | 1.3332 (15) | C14—C15 | 1.4191 (15) |
C1—N2 | 1.3633 (14) | C14—H14 | 0.93 |
C6—O1 | 1.2270 (13) | C15—N4 | 1.3680 (13) |
C6—N3 | 1.3711 (14) | N1—H1B | 0.836 (19) |
C6—C7 | 1.4997 (14) | N1—H1A | 0.892 (18) |
C7—N4 | 1.3200 (13) | N2—H2A | 0.848 (19) |
C7—C8 | 1.4125 (14) | N3—H3A | 0.857 (17) |
C8—C9 | 1.3679 (15) | N5—O2 | 1.2402 (12) |
C8—H8 | 0.93 | N5—O4 | 1.2516 (13) |
C9—C10 | 1.4155 (15) | N5—O3 | 1.2729 (13) |
N2—C5—C4 | 120.18 (10) | C11—C10—C15 | 119.15 (10) |
N2—C5—N3 | 118.34 (9) | C12—C11—C10 | 120.42 (10) |
C4—C5—N3 | 121.46 (10) | C12—C11—H11 | 119.8 |
C5—C4—C3 | 118.15 (10) | C10—C11—H11 | 119.8 |
C5—C4—H4 | 120.9 | C11—C12—C13 | 120.28 (10) |
C3—C4—H4 | 120.9 | C11—C12—H12 | 119.9 |
C2—C3—C4 | 121.40 (10) | C13—C12—H12 | 119.9 |
C2—C3—H3 | 119.3 | C14—C13—C12 | 120.90 (10) |
C4—C3—H3 | 119.3 | C14—C13—H13 | 119.5 |
C3—C2—C1 | 119.44 (10) | C12—C13—H13 | 119.5 |
C3—C2—H2 | 120.3 | C13—C14—C15 | 119.95 (10) |
C1—C2—H2 | 120.3 | C13—C14—H14 | 120 |
N1—C1—N2 | 118.16 (10) | C15—C14—H14 | 120 |
N1—C1—C2 | 124.00 (10) | N4—C15—C14 | 118.90 (10) |
N2—C1—C2 | 117.84 (10) | N4—C15—C10 | 121.82 (10) |
O1—C6—N3 | 123.59 (10) | C14—C15—C10 | 119.28 (10) |
O1—C6—C7 | 121.40 (9) | C1—N1—H1B | 116.0 (12) |
N3—C6—C7 | 115.01 (9) | C1—N1—H1A | 118.4 (11) |
N4—C7—C8 | 125.13 (10) | H1B—N1—H1A | 123.6 (16) |
N4—C7—C6 | 117.22 (9) | C5—N2—C1 | 122.93 (10) |
C8—C7—C6 | 117.65 (9) | C5—N2—H2A | 117.6 (12) |
C9—C8—C7 | 118.16 (10) | C1—N2—H2A | 119.4 (12) |
C9—C8—H8 | 120.9 | C6—N3—C5 | 126.27 (9) |
C7—C8—H8 | 120.9 | C6—N3—H3A | 117.0 (11) |
C8—C9—C10 | 119.18 (10) | C5—N3—H3A | 116.6 (11) |
C8—C9—H9 | 120.4 | C7—N4—C15 | 117.29 (9) |
C10—C9—H9 | 120.4 | O2—N5—O4 | 121.37 (10) |
C9—C10—C11 | 122.44 (10) | O2—N5—O3 | 119.49 (9) |
C9—C10—C15 | 118.40 (9) | O4—N5—O3 | 119.14 (9) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O3 | 0.892 (18) | 2.019 (19) | 2.8721 (14) | 159.7 (16) |
N1—H1B···O4i | 0.836 (19) | 2.204 (19) | 3.0202 (14) | 165.1 (16) |
N2—H2A···O1 | 0.848 (19) | 1.984 (18) | 2.6458 (12) | 134.1 (16) |
N2—H2A···O3 | 0.848 (19) | 2.496 (18) | 3.2058 (12) | 141.7 (15) |
N3—H3A···O3ii | 0.857 (17) | 2.153 (17) | 2.9652 (12) | 158.2 (15) |
N3—H3A···N4 | 0.857 (17) | 2.288 (16) | 2.6879 (15) | 108.7 (13) |
C4—H4···O3ii | 0.93 | 2.44 | 3.1947 (14) | 138 |
C11—H11···O4iii | 0.93 | 2.53 | 3.3460 (14) | 147 |
C12—H12···O2iv | 0.93 | 2.5 | 3.2901 (14) | 142 |
C14—H14···O2ii | 0.93 | 2.55 | 3.1840 (14) | 126 |
Symmetry codes: (i) −x+1, y+1/2, −z+5/2; (ii) x, −y+1/2, z−1/2; (iii) −x+2, y−1/2, −z+5/2; (iv) −x+2, −y, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C15H13N4O+·NO3− |
Mr | 327.30 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 8.183 (2), 11.768 (3), 14.979 (4) |
β (°) | 98.37 (1) |
V (Å3) | 1427.1 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.12 |
Crystal size (mm) | 0.49 × 0.41 × 0.31 |
Data collection | |
Diffractometer | Bruker X8 APEXII KappaCCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2008) |
Tmin, Tmax | 0.990, 0.994 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 26710, 3555, 3180 |
Rint | 0.023 |
(sin θ/λ)max (Å−1) | 0.668 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.035, 0.1, 1.03 |
No. of reflections | 3555 |
No. of parameters | 233 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.42, −0.25 |
Computer programs: APEX2 (Bruker, 2011), SAINT-Plus (Bruker, 2008), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), DIAMOND (Brandenburg & Putz, 2005), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O3 | 0.892 (18) | 2.019 (19) | 2.8721 (14) | 159.7 (16) |
N1—H1B···O4i | 0.836 (19) | 2.204 (19) | 3.0202 (14) | 165.1 (16) |
N2—H2A···O1 | 0.848 (19) | 1.984 (18) | 2.6458 (12) | 134.1 (16) |
N2—H2A···O3 | 0.848 (19) | 2.496 (18) | 3.2058 (12) | 141.7 (15) |
N3—H3A···O3ii | 0.857 (17) | 2.153 (17) | 2.9652 (12) | 158.2 (15) |
N3—H3A···N4 | 0.857 (17) | 2.288 (16) | 2.6879 (15) | 108.7 (13) |
C4—H4···O3ii | 0.93 | 2.44 | 3.1947 (14) | 137.8 |
C11—H11···O4iii | 0.93 | 2.53 | 3.3460 (14) | 147.3 |
C12—H12···O2iv | 0.93 | 2.5 | 3.2901 (14) | 142.4 |
C14—H14···O2ii | 0.93 | 2.55 | 3.1840 (14) | 125.8 |
Symmetry codes: (i) −x+1, y+1/2, −z+5/2; (ii) x, −y+1/2, z−1/2; (iii) −x+2, y−1/2, −z+5/2; (iv) −x+2, −y, −z+2. |
Acknowledgements
The authors would like to thank the Department of Chemistry of the University of the Free State, the NRF, NTeMBI, THRIP and Sasol Ltd for funding.
References
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Bruker (2011). APEX2. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
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The title compound was synthesized as a ligand for potential use in medical and radiopharmaceutical applications. The asymmetric unit in the title compound contains a C15H13N4O cation and a NO3- counter ion. A range of N—H···N, N—H···O and C—H···O hydrogen interactions are observed throughout the structure. Further stabilization of the crystal structure is obtained by π-π stacking interactions between inversion-related quinolines and inversion-related pyridines with respective centroid-to-centroid distances of 3.5866 (6) Å and 3.3980 (6) Å (see Fig. 2). For similar structures that form part of our radiopharmaceutical research see: Al-Dajani et al. (2010); Jain et al. (2004) and Van der Berg et al. (2011).