organic compounds
5-Hydroxy-2-{(E)-[(3-nitrophenyl)iminio]methyl}phenolate
aUniversity of Sargodha, Department of Chemistry, Sargodha, Pakistan, bUniversity of Sargodha, Department of Physics, Sargodha, Pakistan, and cUniversity of Engineering and Technology, Department of Chemistry, Lahore 54890, Pakistan
*Correspondence e-mail: dmntahir_uos@yahoo.com
The title compound, C13H10N2O4, crystallized as the zwitterionic tautomer. As a result, the phenolate C—O− bond [1.296 (2) Å] is shorter than a normal Csp2—O(H) bond, and the azomethine C=N bond [1.314 (2) Å] is longer than a normal C=N double bond. The molecule is nearly planar, the mean plane of the nitro-substituted benzene ring forming dihedral angles of 9.83 (7) and 8.45 (9)° with the other benzene ring and with the nitro group, respectively. The molecular conformation is stabilized by an intramolecular N—H⋯O hydrogen bond. In the crystal, strong O—H⋯O hydrogen bonds link the molecules into double-stranded chains along the b-axis direction. Within the chains there are π–π interactions involving the benzene rings of adjacent molecules [centroid–centroid distance = 3.669 (1) Å]. The chains are linked via C—H⋯O hydrogen bonds, forming R21(6), R21(7) and R22(10) ring motifs.
Related literature
For related structures, see: Yeap et al. (1992); Hijji et al. (2009). For graph-set analysis of hydrogen bonds, see: Bernstein et al. (1995).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON.
Supporting information
10.1107/S1600536812033740/yk2068sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812033740/yk2068Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812033740/yk2068Isup3.cml
3-Nitroaniline (0.138 g, 1.0 mmol) was dissolved in distilled methanol. Solution of 2,4-dihydroxybenzaldehyde (0.138 g, 1.0 mmol) in methanol was added dropwise. The mixture was refluxed for 2 h and orange prisms of the title compound were obtained after 48 h.
At initial stages, all H atoms were refined freely, indicating the zwitterion structure. Later, all H atoms were positioned geometrically at C—H = 0.93, N—H = 0.86 and O—H = 0.82 Å, respectively, and refined as riding with Uiso(H) = xUeq(C, N, O), where x = 1.5 for hydroxy and x = 1.2 for other H atoms.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON (Spek, 2009).C13H10N2O4 | F(000) = 1072 |
Mr = 258.23 | Dx = 1.438 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 1569 reflections |
a = 12.8518 (9) Å | θ = 3.1–25.3° |
b = 7.8501 (5) Å | µ = 0.11 mm−1 |
c = 24.1316 (18) Å | T = 296 K |
β = 101.593 (3)° | Prism, orange |
V = 2384.9 (3) Å3 | 0.30 × 0.25 × 0.22 mm |
Z = 8 |
Bruker Kappa APEXII CCD area-detector diffractometer | 2126 independent reflections |
Radiation source: fine-focus sealed tube | 1569 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.025 |
Detector resolution: 8.10 pixels mm-1 | θmax = 25.3°, θmin = 3.1° |
ω scans | h = −15→15 |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | k = −9→8 |
Tmin = 0.975, Tmax = 0.985 | l = −28→27 |
5601 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.038 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.105 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0478P)2 + 0.8634P] where P = (Fo2 + 2Fc2)/3 |
2126 reflections | (Δ/σ)max < 0.001 |
173 parameters | Δρmax = 0.13 e Å−3 |
0 restraints | Δρmin = −0.15 e Å−3 |
C13H10N2O4 | V = 2384.9 (3) Å3 |
Mr = 258.23 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 12.8518 (9) Å | µ = 0.11 mm−1 |
b = 7.8501 (5) Å | T = 296 K |
c = 24.1316 (18) Å | 0.30 × 0.25 × 0.22 mm |
β = 101.593 (3)° |
Bruker Kappa APEXII CCD area-detector diffractometer | 2126 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 1569 reflections with I > 2σ(I) |
Tmin = 0.975, Tmax = 0.985 | Rint = 0.025 |
5601 measured reflections |
R[F2 > 2σ(F2)] = 0.038 | 0 restraints |
wR(F2) = 0.105 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.13 e Å−3 |
2126 reflections | Δρmin = −0.15 e Å−3 |
173 parameters |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.15456 (11) | −0.19142 (18) | 0.02818 (6) | 0.0662 (5) | |
O2 | 0.20746 (12) | 0.03661 (18) | −0.00681 (6) | 0.0724 (6) | |
O3 | 0.62612 (10) | 0.43187 (15) | 0.22353 (5) | 0.0534 (4) | |
O4 | 0.76284 (11) | 0.95669 (16) | 0.17361 (5) | 0.0575 (5) | |
N1 | 0.21457 (12) | −0.0694 (2) | 0.03061 (7) | 0.0496 (6) | |
N2 | 0.49661 (11) | 0.26941 (19) | 0.14644 (6) | 0.0474 (5) | |
C1 | 0.43511 (13) | 0.1203 (2) | 0.13474 (7) | 0.0410 (6) | |
C2 | 0.35653 (14) | 0.1006 (2) | 0.08681 (7) | 0.0421 (6) | |
C3 | 0.29944 (13) | −0.0494 (2) | 0.08125 (7) | 0.0414 (6) | |
C4 | 0.31558 (15) | −0.1781 (2) | 0.12040 (8) | 0.0481 (6) | |
C5 | 0.39528 (16) | −0.1569 (3) | 0.16724 (8) | 0.0530 (7) | |
C6 | 0.45478 (14) | −0.0106 (3) | 0.17409 (7) | 0.0487 (6) | |
C7 | 0.50024 (13) | 0.4025 (2) | 0.11385 (7) | 0.0447 (6) | |
C8 | 0.56478 (13) | 0.5432 (2) | 0.13102 (7) | 0.0405 (6) | |
C9 | 0.62972 (13) | 0.5521 (2) | 0.18714 (7) | 0.0403 (6) | |
C10 | 0.69554 (13) | 0.6942 (2) | 0.20049 (7) | 0.0406 (6) | |
C11 | 0.69865 (13) | 0.8209 (2) | 0.16195 (7) | 0.0416 (6) | |
C12 | 0.63360 (14) | 0.8146 (2) | 0.10705 (7) | 0.0461 (6) | |
C13 | 0.56882 (14) | 0.6792 (2) | 0.09292 (7) | 0.0459 (6) | |
H2 | 0.34268 | 0.18528 | 0.05936 | 0.0505* | |
H2A | 0.53731 | 0.27396 | 0.17938 | 0.0569* | |
H4 | 0.27414 | −0.27611 | 0.11547 | 0.0578* | |
H4A | 0.79725 | 0.94912 | 0.20604 | 0.0862* | |
H5 | 0.40893 | −0.24223 | 0.19446 | 0.0636* | |
H6 | 0.50928 | 0.00111 | 0.20566 | 0.0584* | |
H7 | 0.45787 | 0.40280 | 0.07774 | 0.0536* | |
H10 | 0.73819 | 0.70276 | 0.23640 | 0.0487* | |
H12 | 0.63551 | 0.90201 | 0.08126 | 0.0553* | |
H13 | 0.52555 | 0.67518 | 0.05708 | 0.0551* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0630 (9) | 0.0603 (9) | 0.0709 (10) | −0.0201 (8) | 0.0033 (7) | −0.0121 (7) |
O2 | 0.0882 (12) | 0.0606 (9) | 0.0540 (9) | −0.0102 (8) | −0.0198 (8) | 0.0103 (8) |
O3 | 0.0592 (8) | 0.0484 (7) | 0.0437 (8) | −0.0070 (6) | −0.0110 (6) | 0.0081 (6) |
O4 | 0.0692 (9) | 0.0485 (8) | 0.0460 (8) | −0.0139 (7) | −0.0092 (6) | 0.0048 (6) |
N1 | 0.0527 (10) | 0.0446 (9) | 0.0478 (10) | −0.0009 (8) | 0.0010 (7) | −0.0077 (8) |
N2 | 0.0451 (9) | 0.0506 (9) | 0.0399 (9) | −0.0003 (8) | −0.0072 (6) | −0.0014 (7) |
C1 | 0.0396 (10) | 0.0429 (10) | 0.0386 (10) | 0.0018 (8) | 0.0037 (7) | −0.0030 (8) |
C2 | 0.0469 (10) | 0.0370 (10) | 0.0389 (10) | 0.0026 (8) | 0.0002 (8) | 0.0031 (7) |
C3 | 0.0418 (10) | 0.0400 (10) | 0.0401 (10) | 0.0022 (8) | 0.0031 (8) | −0.0036 (8) |
C4 | 0.0514 (11) | 0.0426 (10) | 0.0510 (11) | 0.0008 (9) | 0.0117 (9) | 0.0057 (9) |
C5 | 0.0567 (12) | 0.0538 (12) | 0.0484 (12) | 0.0081 (10) | 0.0103 (9) | 0.0167 (9) |
C6 | 0.0469 (11) | 0.0619 (12) | 0.0347 (10) | 0.0056 (10) | 0.0023 (8) | 0.0053 (9) |
C7 | 0.0391 (10) | 0.0532 (11) | 0.0374 (10) | 0.0041 (9) | −0.0025 (8) | −0.0024 (9) |
C8 | 0.0368 (9) | 0.0432 (10) | 0.0378 (10) | 0.0029 (8) | −0.0016 (7) | −0.0044 (8) |
C9 | 0.0391 (10) | 0.0399 (10) | 0.0385 (10) | 0.0062 (8) | −0.0002 (7) | 0.0001 (8) |
C10 | 0.0414 (10) | 0.0429 (10) | 0.0318 (9) | 0.0022 (8) | −0.0059 (7) | −0.0033 (8) |
C11 | 0.0429 (10) | 0.0391 (10) | 0.0403 (10) | 0.0018 (8) | 0.0024 (8) | −0.0024 (8) |
C12 | 0.0514 (11) | 0.0479 (11) | 0.0356 (10) | 0.0027 (9) | 0.0007 (8) | 0.0050 (8) |
C13 | 0.0462 (11) | 0.0528 (11) | 0.0337 (10) | 0.0048 (9) | −0.0040 (8) | 0.0004 (8) |
O1—N1 | 1.224 (2) | C7—C8 | 1.393 (2) |
O2—N1 | 1.218 (2) | C8—C13 | 1.417 (2) |
O3—C9 | 1.296 (2) | C8—C9 | 1.443 (2) |
O4—C11 | 1.343 (2) | C9—C10 | 1.398 (2) |
O4—H4A | 0.8200 | C10—C11 | 1.368 (2) |
N1—C3 | 1.474 (2) | C11—C12 | 1.418 (2) |
N2—C7 | 1.314 (2) | C12—C13 | 1.351 (2) |
N2—C1 | 1.409 (2) | C2—H2 | 0.9300 |
N2—H2A | 0.8600 | C4—H4 | 0.9300 |
C1—C6 | 1.388 (3) | C5—H5 | 0.9300 |
C1—C2 | 1.383 (2) | C6—H6 | 0.9300 |
C2—C3 | 1.380 (2) | C7—H7 | 0.9300 |
C3—C4 | 1.370 (2) | C10—H10 | 0.9300 |
C4—C5 | 1.375 (3) | C12—H12 | 0.9300 |
C5—C6 | 1.371 (3) | C13—H13 | 0.9300 |
C11—O4—H4A | 109.00 | C8—C9—C10 | 117.65 (14) |
O1—N1—O2 | 123.14 (17) | C9—C10—C11 | 121.51 (15) |
O1—N1—C3 | 118.52 (15) | O4—C11—C12 | 116.45 (14) |
O2—N1—C3 | 118.35 (15) | O4—C11—C10 | 122.38 (15) |
C1—N2—C7 | 128.80 (15) | C10—C11—C12 | 121.17 (15) |
C7—N2—H2A | 116.00 | C11—C12—C13 | 118.74 (15) |
C1—N2—H2A | 116.00 | C8—C13—C12 | 122.02 (16) |
N2—C1—C2 | 123.13 (15) | C1—C2—H2 | 121.00 |
N2—C1—C6 | 117.42 (15) | C3—C2—H2 | 121.00 |
C2—C1—C6 | 119.45 (16) | C3—C4—H4 | 121.00 |
C1—C2—C3 | 117.49 (15) | C5—C4—H4 | 121.00 |
N1—C3—C2 | 117.52 (14) | C4—C5—H5 | 120.00 |
N1—C3—C4 | 118.52 (15) | C6—C5—H5 | 120.00 |
C2—C3—C4 | 123.95 (16) | C1—C6—H6 | 119.00 |
C3—C4—C5 | 117.53 (17) | C5—C6—H6 | 119.00 |
C4—C5—C6 | 120.39 (19) | N2—C7—H7 | 119.00 |
C1—C6—C5 | 121.15 (16) | C8—C7—H7 | 119.00 |
N2—C7—C8 | 122.88 (15) | C9—C10—H10 | 119.00 |
C7—C8—C13 | 120.11 (15) | C11—C10—H10 | 119.00 |
C7—C8—C9 | 121.00 (15) | C11—C12—H12 | 121.00 |
C9—C8—C13 | 118.88 (15) | C13—C12—H12 | 121.00 |
O3—C9—C8 | 120.53 (14) | C8—C13—H13 | 119.00 |
O3—C9—C10 | 121.82 (15) | C12—C13—H13 | 119.00 |
O1—N1—C3—C2 | −171.10 (16) | C4—C5—C6—C1 | 1.1 (3) |
O1—N1—C3—C4 | 7.6 (2) | N2—C7—C8—C9 | −1.9 (3) |
O2—N1—C3—C2 | 8.8 (2) | N2—C7—C8—C13 | 177.02 (16) |
O2—N1—C3—C4 | −172.56 (17) | C7—C8—C9—O3 | −2.7 (3) |
C7—N2—C1—C2 | −8.0 (3) | C7—C8—C9—C10 | 177.49 (16) |
C7—N2—C1—C6 | 172.80 (17) | C13—C8—C9—O3 | 178.36 (16) |
C1—N2—C7—C8 | 179.59 (16) | C13—C8—C9—C10 | −1.5 (2) |
N2—C1—C2—C3 | −177.80 (16) | C7—C8—C13—C12 | −177.19 (17) |
C6—C1—C2—C3 | 1.4 (3) | C9—C8—C13—C12 | 1.8 (3) |
N2—C1—C6—C5 | 177.00 (17) | O3—C9—C10—C11 | −179.76 (16) |
C2—C1—C6—C5 | −2.2 (3) | C8—C9—C10—C11 | 0.1 (2) |
C1—C2—C3—N1 | 179.08 (15) | C9—C10—C11—O4 | −178.67 (16) |
C1—C2—C3—C4 | 0.5 (3) | C9—C10—C11—C12 | 1.1 (3) |
N1—C3—C4—C5 | 179.88 (17) | O4—C11—C12—C13 | 178.96 (16) |
C2—C3—C4—C5 | −1.6 (3) | C10—C11—C12—C13 | −0.9 (3) |
C3—C4—C5—C6 | 0.7 (3) | C11—C12—C13—C8 | −0.6 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O3 | 0.86 | 1.87 | 2.5716 (19) | 138 |
O4—H4A···O3i | 0.82 | 1.79 | 2.6100 (17) | 179 |
C2—H2···O2ii | 0.93 | 2.54 | 3.446 (2) | 164 |
C4—H4···O4iii | 0.93 | 2.54 | 3.268 (2) | 135 |
C7—H7···O2ii | 0.93 | 2.49 | 3.355 (2) | 154 |
C10—H10···O3i | 0.93 | 2.56 | 3.226 (2) | 129 |
Symmetry codes: (i) −x+3/2, y+1/2, −z+1/2; (ii) −x+1/2, −y+1/2, −z; (iii) x−1/2, y−3/2, z. |
Experimental details
Crystal data | |
Chemical formula | C13H10N2O4 |
Mr | 258.23 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 296 |
a, b, c (Å) | 12.8518 (9), 7.8501 (5), 24.1316 (18) |
β (°) | 101.593 (3) |
V (Å3) | 2384.9 (3) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.30 × 0.25 × 0.22 |
Data collection | |
Diffractometer | Bruker Kappa APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.975, 0.985 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5601, 2126, 1569 |
Rint | 0.025 |
(sin θ/λ)max (Å−1) | 0.600 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.038, 0.105, 1.02 |
No. of reflections | 2126 |
No. of parameters | 173 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.13, −0.15 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009), WinGX (Farrugia, 1999) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···O3 | 0.86 | 1.87 | 2.5716 (19) | 138 |
O4—H4A···O3i | 0.82 | 1.79 | 2.6100 (17) | 179 |
C2—H2···O2ii | 0.93 | 2.54 | 3.446 (2) | 164 |
C4—H4···O4iii | 0.93 | 2.54 | 3.268 (2) | 135 |
C7—H7···O2ii | 0.93 | 2.49 | 3.355 (2) | 154 |
C10—H10···O3i | 0.93 | 2.56 | 3.226 (2) | 129 |
Symmetry codes: (i) −x+3/2, y+1/2, −z+1/2; (ii) −x+1/2, −y+1/2, −z; (iii) x−1/2, y−3/2, z. |
Acknowledgements
The authors acknowledge the provision of funds for the purchase of a diffractometer and encouragement by Dr Muhammad Akram Chaudhary, Vice Chancellor, University of Sargodha, Pakistan. The authors also acknowledge the technical support provided by Syed Muhammad Hussain Rizvi of Bana International, Karachi, Pakistan.
References
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The title compound (Fig. 1) has been synthesized as a precursor for complex formation and other studies.
In contrast to the closely related structure of 2-[(3-nitrophenylimino)methyl]phenol (Yeap et al., 1992), the title compound is a zwitterion, in which the hydroxy H+ ion is transferred to the imino N atom (Fig. 1). Analogous zwitterionic structure is observed for 2-{[(2-hydroxy-5-nitrophenyl)iminio]methyl}phenolate (Hijji et al., 2009).
The molecule consists of two roughly planar groups, the 3-nitroaniline fragment (C1—C6/N1/N2/O1/O2) and the rest of 2,4-dihydroxybenzaldehyde (C7—C13/O3/O4), the mean deviations from the planes are 0.070Å and 0.023Å, respectively. The dihedral angle between the planes of these groups is 9.37 (6)°.
Strong intramolecular N—H···O hydrogen bond (Table 1, Fig. 2) produce S(6) ring motif (Bernstein et al., 1995). Due to the intermolecular O—H···O hydrogen bonds, the C(6) chains along the b-axis direction are formed (Table 1, Fig. 2). The C—H···O interactions join these chains, generating the R21(7) and R22(10) rings. motifs. Due to the C—H···O and O—H···O hydrogen bonds, the R21(6) ring motif is also formed (Table 1, Fig. 2).