metal-organic compounds
(Cyanato-κN){1-[(E)-phenyl(pyridin-2-yl-κN)methylidene]semicarbazidato-κ2N1,O}copper(II)
aDepartment of Applied Chemistry, Cochin University of Science and Technology, Kochi 682 022, India, bDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia, and cChemistry Department, King Abdulaziz University, PO Box 80203 Jeddah, Saudi Arabia
*Correspondence e-mail: seikweng@um.edu.my
The CuII atom in the title compound, [Cu(C13H11N4O)(NCO)], is N,N′,O-chelated by the mono-deprotonated Schiff base ligand and it is also covalently bonded to the nitrogen end of the cyanate ion. The CuII atom shows a square-planar coordination that is distorted towards square-pyramidal owing to an intermolecular Cu⋯Ncyanate interaction [2.623 (2) Å], which gives a centrosymmetric dimer. In the square-planar description, the CuII atom is displaced out of the square plane [r.m.s. deviation = 0.048 Å] by 0.084 (1) Å in the direction of the apical occupant. In the crystal, adjacent complex dimers are linked by an amine N—H⋯N hydrogen-bond pair, also giving a centrosymmetric cyclic association [graph set R22(8)], generating a linear chain parallel to [110].
Related literature
For the synthesis of the Schiff base, see: de Lima et al. (2008). For a related copper(II) derivative, see: Peŕez-Rebolledo et al. (2006). For graph-set notation, see: Etter et al. (1990).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2010); cell SAINT (Bruker, 2010); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536812035386/zs2226sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812035386/zs2226Isup2.hkl
A methanol solution (20 ml) of 2-benzoylpyridine semicarbazone (0.240 g, 1 mmol) (de Lima et al., 2008), copper sulfate pentahydrate (0.249 g, 1 mmol) and sodium cyanate (0.065 g, 1 mmol) was heated for 5 h. The dark green solid was collected and recrystallized from methanol.
Carbon-bound H-atoms were placed in calculated positions (C—H = 0.93 Å) and were included in the
in the riding model approximation, with Uiso(H) set to 1.2Ueq(C). The amino H-atoms were located in a difference Fourier map, and were refined with a distance restraint of N—H = 0.88±0.01 Å and their displacement parameters refined. Only one H-atom is involved in the formation of a hydrogen bond.Data collection: APEX2 (Bruker, 2010); cell
SAINT (Bruker, 2010); data reduction: SAINT (Bruker, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).[Cu(C13H11N4O)(NCO)] | F(000) = 700 |
Mr = 344.82 | Dx = 1.709 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 838 reflections |
a = 8.7601 (1) Å | θ = 2.4–28.3° |
b = 7.6732 (1) Å | µ = 1.64 mm−1 |
c = 20.0819 (3) Å | T = 293 K |
β = 96.7467 (7)° | Prism, dark green |
V = 1340.52 (3) Å3 | 0.30 × 0.25 × 0.20 mm |
Z = 4 |
Bruker Kappa APEXII diffractometer | 3069 independent reflections |
Radiation source: fine-focus sealed tube | 2728 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.031 |
ω scans | θmax = 27.5°, θmin = 2.7° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −10→11 |
Tmin = 0.638, Tmax = 0.735 | k = −9→9 |
11886 measured reflections | l = −26→26 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.029 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.093 | w = 1/[σ2(Fo2) + (0.0579P)2 + 0.5121P] where P = (Fo2 + 2Fc2)/3 |
S = 1.03 | (Δ/σ)max = 0.001 |
3069 reflections | Δρmax = 0.37 e Å−3 |
208 parameters | Δρmin = −0.47 e Å−3 |
2 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0221 (17) |
[Cu(C13H11N4O)(NCO)] | V = 1340.52 (3) Å3 |
Mr = 344.82 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 8.7601 (1) Å | µ = 1.64 mm−1 |
b = 7.6732 (1) Å | T = 293 K |
c = 20.0819 (3) Å | 0.30 × 0.25 × 0.20 mm |
β = 96.7467 (7)° |
Bruker Kappa APEXII diffractometer | 3069 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2728 reflections with I > 2σ(I) |
Tmin = 0.638, Tmax = 0.735 | Rint = 0.031 |
11886 measured reflections |
R[F2 > 2σ(F2)] = 0.029 | 2 restraints |
wR(F2) = 0.093 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.37 e Å−3 |
3069 reflections | Δρmin = −0.47 e Å−3 |
208 parameters |
x | y | z | Uiso*/Ueq | ||
Cu1 | 0.31070 (2) | 0.50325 (3) | 0.506177 (10) | 0.03203 (12) | |
O1 | 0.28257 (17) | 0.3049 (2) | 0.56285 (6) | 0.0473 (4) | |
O2 | 0.5831 (2) | 0.6387 (3) | 0.67349 (8) | 0.0696 (6) | |
N1 | 0.26412 (17) | 0.6848 (2) | 0.43675 (7) | 0.0323 (3) | |
N2 | 0.13987 (16) | 0.38948 (19) | 0.45304 (7) | 0.0287 (3) | |
N3 | 0.09476 (17) | 0.2331 (2) | 0.47511 (7) | 0.0332 (3) | |
N4 | 0.1503 (3) | 0.0571 (3) | 0.56674 (9) | 0.0526 (5) | |
H41 | 0.078 (2) | −0.018 (3) | 0.5525 (15) | 0.057 (8)* | |
H42 | 0.196 (3) | 0.034 (4) | 0.6065 (8) | 0.059 (8)* | |
N5 | 0.47729 (18) | 0.6213 (2) | 0.56268 (8) | 0.0391 (4) | |
C1 | 0.3226 (2) | 0.8437 (3) | 0.43590 (10) | 0.0425 (4) | |
H1 | 0.3972 | 0.8773 | 0.4703 | 0.051* | |
C2 | 0.2763 (3) | 0.9611 (3) | 0.38550 (13) | 0.0480 (5) | |
H2 | 0.3178 | 1.0727 | 0.3862 | 0.058* | |
C3 | 0.1682 (2) | 0.9104 (3) | 0.33440 (11) | 0.0448 (5) | |
H3 | 0.1354 | 0.9875 | 0.2999 | 0.054* | |
C4 | 0.1084 (2) | 0.7441 (3) | 0.33435 (9) | 0.0383 (4) | |
H4 | 0.0364 | 0.7071 | 0.2995 | 0.046* | |
C5 | 0.15699 (19) | 0.6327 (2) | 0.38691 (8) | 0.0299 (3) | |
C6 | 0.09472 (19) | 0.4563 (3) | 0.39498 (8) | 0.0289 (3) | |
C7 | −0.00451 (19) | 0.3697 (2) | 0.34034 (8) | 0.0295 (3) | |
C8 | 0.0435 (2) | 0.3596 (3) | 0.27703 (9) | 0.0373 (4) | |
H8 | 0.1360 | 0.4106 | 0.2691 | 0.045* | |
C9 | −0.0453 (2) | 0.2744 (3) | 0.22558 (9) | 0.0438 (5) | |
H9 | −0.0119 | 0.2674 | 0.1834 | 0.053* | |
C10 | −0.1826 (2) | 0.2003 (3) | 0.23667 (10) | 0.0453 (5) | |
H10 | −0.2419 | 0.1424 | 0.2021 | 0.054* | |
C11 | −0.2324 (2) | 0.2114 (3) | 0.29881 (11) | 0.0438 (5) | |
H11 | −0.3263 | 0.1626 | 0.3060 | 0.053* | |
C12 | −0.1440 (2) | 0.2947 (3) | 0.35081 (9) | 0.0351 (4) | |
H12 | −0.1779 | 0.3006 | 0.3929 | 0.042* | |
C13 | 0.1784 (2) | 0.2042 (3) | 0.53522 (8) | 0.0369 (4) | |
C14 | 0.5253 (2) | 0.6252 (3) | 0.61718 (10) | 0.0396 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.03601 (17) | 0.03610 (18) | 0.02273 (15) | −0.00921 (8) | −0.00184 (10) | −0.00184 (7) |
O1 | 0.0603 (9) | 0.0532 (9) | 0.0253 (6) | −0.0211 (7) | −0.0086 (6) | 0.0083 (6) |
O2 | 0.0639 (10) | 0.1105 (17) | 0.0313 (7) | −0.0030 (10) | −0.0079 (7) | −0.0060 (9) |
N1 | 0.0361 (7) | 0.0323 (8) | 0.0282 (7) | −0.0055 (6) | 0.0017 (6) | −0.0025 (6) |
N2 | 0.0310 (7) | 0.0321 (7) | 0.0227 (6) | −0.0053 (6) | 0.0020 (5) | −0.0012 (5) |
N3 | 0.0399 (7) | 0.0341 (8) | 0.0250 (6) | −0.0089 (6) | 0.0013 (6) | 0.0017 (6) |
N4 | 0.0713 (13) | 0.0508 (11) | 0.0329 (9) | −0.0212 (10) | −0.0060 (8) | 0.0121 (8) |
N5 | 0.0370 (8) | 0.0480 (10) | 0.0316 (8) | −0.0072 (7) | 0.0011 (6) | −0.0007 (7) |
C1 | 0.0503 (11) | 0.0374 (10) | 0.0396 (10) | −0.0124 (8) | 0.0041 (8) | −0.0064 (8) |
C2 | 0.0609 (13) | 0.0314 (9) | 0.0536 (13) | −0.0093 (10) | 0.0149 (10) | 0.0014 (9) |
C3 | 0.0528 (11) | 0.0375 (11) | 0.0452 (11) | 0.0039 (9) | 0.0104 (9) | 0.0092 (9) |
C4 | 0.0400 (9) | 0.0381 (10) | 0.0358 (9) | 0.0018 (8) | −0.0002 (7) | 0.0037 (8) |
C5 | 0.0295 (7) | 0.0314 (9) | 0.0288 (7) | −0.0007 (6) | 0.0034 (6) | −0.0017 (6) |
C6 | 0.0270 (7) | 0.0332 (8) | 0.0261 (8) | −0.0013 (7) | 0.0014 (6) | −0.0013 (7) |
C7 | 0.0296 (7) | 0.0297 (8) | 0.0273 (7) | −0.0003 (6) | −0.0041 (6) | 0.0010 (6) |
C8 | 0.0344 (9) | 0.0473 (11) | 0.0295 (8) | −0.0053 (8) | 0.0008 (7) | −0.0012 (8) |
C9 | 0.0500 (11) | 0.0512 (12) | 0.0285 (8) | 0.0002 (9) | −0.0031 (8) | −0.0051 (8) |
C10 | 0.0465 (11) | 0.0454 (12) | 0.0396 (10) | −0.0040 (9) | −0.0142 (8) | −0.0070 (8) |
C11 | 0.0317 (9) | 0.0455 (11) | 0.0515 (11) | −0.0083 (8) | −0.0062 (8) | 0.0002 (9) |
C12 | 0.0309 (8) | 0.0368 (10) | 0.0368 (9) | −0.0022 (7) | 0.0013 (7) | 0.0002 (7) |
C13 | 0.0456 (10) | 0.0403 (10) | 0.0247 (8) | −0.0078 (8) | 0.0039 (7) | 0.0023 (7) |
C14 | 0.0350 (9) | 0.0442 (11) | 0.0398 (10) | −0.0061 (8) | 0.0060 (7) | −0.0032 (8) |
Cu1—O1 | 1.9335 (14) | C2—H2 | 0.9300 |
Cu1—N2 | 1.9404 (14) | C3—C4 | 1.379 (3) |
Cu1—N5 | 1.9618 (16) | C3—H3 | 0.9300 |
Cu1—N1 | 1.9790 (15) | C4—C5 | 1.385 (2) |
Cu1—N5i | 2.6225 (17) | C4—H4 | 0.9300 |
O1—C13 | 1.272 (2) | C5—C6 | 1.475 (2) |
O2—C14 | 1.188 (2) | C6—C7 | 1.475 (2) |
N1—C1 | 1.324 (2) | C7—C8 | 1.388 (2) |
N1—C5 | 1.349 (2) | C7—C12 | 1.388 (2) |
N2—C6 | 1.293 (2) | C8—C9 | 1.382 (3) |
N2—N3 | 1.354 (2) | C8—H8 | 0.9300 |
N3—C13 | 1.355 (2) | C9—C10 | 1.372 (3) |
N4—C13 | 1.331 (3) | C9—H9 | 0.9300 |
N4—H41 | 0.876 (10) | C10—C11 | 1.372 (3) |
N4—H42 | 0.869 (10) | C10—H10 | 0.9300 |
N5—C14 | 1.126 (2) | C11—C12 | 1.382 (3) |
C1—C2 | 1.380 (3) | C11—H11 | 0.9300 |
C1—H1 | 0.9300 | C12—H12 | 0.9300 |
C2—C3 | 1.368 (3) | ||
O1—Cu1—N2 | 79.99 (6) | C3—C4—C5 | 119.16 (18) |
O1—Cu1—N5 | 99.25 (6) | C3—C4—H4 | 120.4 |
N2—Cu1—N5 | 177.52 (6) | C5—C4—H4 | 120.4 |
O1—Cu1—N1 | 159.83 (6) | N1—C5—C4 | 120.48 (17) |
N2—Cu1—N1 | 81.22 (6) | N1—C5—C6 | 115.08 (15) |
N5—Cu1—N1 | 99.23 (7) | C4—C5—C6 | 124.40 (16) |
O1—Cu1—N5i | 99.82 (6) | N2—C6—C7 | 125.67 (17) |
N2—Cu1—N5i | 95.41 (6) | N2—C6—C5 | 112.66 (15) |
N5—Cu1—N5i | 87.05 (6) | C7—C6—C5 | 121.65 (15) |
N1—Cu1—N5i | 89.15 (6) | C8—C7—C12 | 118.85 (16) |
C13—O1—Cu1 | 110.84 (11) | C8—C7—C6 | 119.40 (16) |
C1—N1—C5 | 119.97 (16) | C12—C7—C6 | 121.74 (16) |
C1—N1—Cu1 | 127.54 (13) | C9—C8—C7 | 120.43 (18) |
C5—N1—Cu1 | 112.47 (12) | C9—C8—H8 | 119.8 |
C6—N2—N3 | 125.23 (14) | C7—C8—H8 | 119.8 |
C6—N2—Cu1 | 116.88 (12) | C10—C9—C8 | 120.13 (19) |
N3—N2—Cu1 | 117.03 (10) | C10—C9—H9 | 119.9 |
N2—N3—C13 | 106.76 (14) | C8—C9—H9 | 119.9 |
C13—N4—H41 | 124 (2) | C9—C10—C11 | 120.02 (17) |
C13—N4—H42 | 121 (2) | C9—C10—H10 | 120.0 |
H41—N4—H42 | 114 (3) | C11—C10—H10 | 120.0 |
C14—N5—Cu1 | 137.89 (16) | C10—C11—C12 | 120.38 (18) |
N1—C1—C2 | 121.99 (19) | C10—C11—H11 | 119.8 |
N1—C1—H1 | 119.0 | C12—C11—H11 | 119.8 |
C2—C1—H1 | 119.0 | C11—C12—C7 | 120.18 (18) |
C3—C2—C1 | 118.8 (2) | C11—C12—H12 | 119.9 |
C3—C2—H2 | 120.6 | C7—C12—H12 | 119.9 |
C1—C2—H2 | 120.6 | O1—C13—N4 | 118.09 (17) |
C2—C3—C4 | 119.53 (19) | O1—C13—N3 | 125.08 (17) |
C2—C3—H3 | 120.2 | N4—C13—N3 | 116.82 (17) |
C4—C3—H3 | 120.2 | N5—C14—O2 | 175.1 (2) |
N2—Cu1—O1—C13 | 3.55 (14) | Cu1—N1—C5—C4 | 179.09 (14) |
N5—Cu1—O1—C13 | −178.85 (14) | C1—N1—C5—C6 | −177.08 (16) |
N1—Cu1—O1—C13 | 25.1 (3) | Cu1—N1—C5—C6 | 1.45 (19) |
N5i—Cu1—O1—C13 | −90.27 (14) | C3—C4—C5—N1 | −1.5 (3) |
O1—Cu1—N1—C1 | 150.16 (19) | C3—C4—C5—C6 | 175.87 (18) |
N2—Cu1—N1—C1 | 171.58 (18) | N3—N2—C6—C7 | −4.9 (3) |
N5—Cu1—N1—C1 | −5.94 (18) | Cu1—N2—C6—C7 | 164.10 (13) |
N5i—Cu1—N1—C1 | −92.81 (17) | N3—N2—C6—C5 | 176.72 (15) |
O1—Cu1—N1—C5 | −28.2 (3) | Cu1—N2—C6—C5 | −14.28 (19) |
N2—Cu1—N1—C5 | −6.80 (12) | N1—C5—C6—N2 | 8.2 (2) |
N5—Cu1—N1—C5 | 175.67 (12) | C4—C5—C6—N2 | −169.37 (17) |
N5i—Cu1—N1—C5 | 88.80 (12) | N1—C5—C6—C7 | −170.28 (15) |
O1—Cu1—N2—C6 | −175.17 (14) | C4—C5—C6—C7 | 12.2 (3) |
N1—Cu1—N2—C6 | 12.18 (13) | N2—C6—C7—C8 | −126.9 (2) |
N5i—Cu1—N2—C6 | −76.12 (14) | C5—C6—C7—C8 | 51.4 (2) |
O1—Cu1—N2—N3 | −5.25 (12) | N2—C6—C7—C12 | 51.9 (3) |
N1—Cu1—N2—N3 | −177.90 (13) | C5—C6—C7—C12 | −129.86 (18) |
N5i—Cu1—N2—N3 | 93.80 (12) | C12—C7—C8—C9 | −0.8 (3) |
C6—N2—N3—C13 | 174.42 (17) | C6—C7—C8—C9 | 178.00 (19) |
Cu1—N2—N3—C13 | 5.43 (18) | C7—C8—C9—C10 | 0.5 (3) |
O1—Cu1—N5—C14 | −22.4 (3) | C8—C9—C10—C11 | 0.4 (3) |
N1—Cu1—N5—C14 | 149.4 (2) | C9—C10—C11—C12 | −1.0 (3) |
N5i—Cu1—N5—C14 | −121.9 (3) | C10—C11—C12—C7 | 0.8 (3) |
C5—N1—C1—C2 | 0.7 (3) | C8—C7—C12—C11 | 0.2 (3) |
Cu1—N1—C1—C2 | −177.57 (16) | C6—C7—C12—C11 | −178.62 (18) |
N1—C1—C2—C3 | −1.0 (3) | Cu1—O1—C13—N4 | 176.97 (17) |
C1—C2—C3—C4 | 0.0 (3) | Cu1—O1—C13—N3 | −1.7 (3) |
C2—C3—C4—C5 | 1.3 (3) | N2—N3—C13—O1 | −2.4 (3) |
C1—N1—C5—C4 | 0.6 (3) | N2—N3—C13—N4 | 178.93 (19) |
Symmetry code: (i) −x+1, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H41···N3ii | 0.88 (1) | 2.27 (1) | 3.139 (2) | 173 (3) |
Symmetry code: (ii) −x, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Cu(C13H11N4O)(NCO)] |
Mr | 344.82 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 8.7601 (1), 7.6732 (1), 20.0819 (3) |
β (°) | 96.7467 (7) |
V (Å3) | 1340.52 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.64 |
Crystal size (mm) | 0.30 × 0.25 × 0.20 |
Data collection | |
Diffractometer | Bruker Kappa APEXII diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.638, 0.735 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11886, 3069, 2728 |
Rint | 0.031 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.029, 0.093, 1.03 |
No. of reflections | 3069 |
No. of parameters | 208 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.37, −0.47 |
Computer programs: APEX2 (Bruker, 2010), SAINT (Bruker, 2010), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), X-SEED (Barbour, 2001), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H41···N3i | 0.88 (1) | 2.27 (1) | 3.139 (2) | 173 (3) |
Symmetry code: (i) −x, −y, −z+1. |
Acknowledgements
RJK thanks the University Grants Commission (India) for a Junior Research Fellowship. We thank the Sophisticated Analytical Instruments Facility, Cochin University of Science and Technology, for the diffraction measurements. We also thank the Ministry of Higher Education of Malaysia (grant No. UM.C/HIR/MOHE/SC/12) for supporting this study.
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2-Benzoylpyridine semicarbazone (de Lima et al., 2008) is a Schiff base that is capable of N,N',O-chelation to transition metal ions. This feature has been documented in a copper(II) dichloride adduct in which the Schiff base exists as a neutral molecule (Peŕez-Rebolledo et al., 2006). However, the CuII atom in the title compound [Cu(NCO)(C13H11N4O)] (Scheme I) is N,N',O-chelated by the mono-deprotonated Schiff base ligand and it is also covalently bonded to the nitrogen end of the cyanate ion. The metal center shows square-planar coordination that is distorted towards square-pyramidal coordination owing to an intermolecular Cu···Ncyanate interaction [2.623 (2) Å], which generates a centrosymmetric dimer (Fig. 1). The geometry is better interpreted as square planar as the Cu···Ncyanate···Cu angle is too acute [93.0 (1)°].
Adjacent dimers are linked by an amine N—H···N hydrogen-bond pair (Table 1), also giving a centrosymmetric cyclic association [graph set R22(8) (Etter et al., 1990], generating a linear chain parallel to [1 1 0].