organic compounds
(E)-1-(5-Iodothiophen-2-yl)-3-(3,4,5-trimethoxyphenyl)prop-2-en-1-one
aCentre of Advanced Study in Crystallography and Biophysics, University of Madras, Guindy Campus, Chennai 600 025, India, and bDepartment of Organic Chemistry, University of Madras, Guindy Campus, Chennai 600 025, India
*Correspondence e-mail: shirai2011@gmail.com
In the title compound, C16H15IO4S, the dihedral angle between the thiophene and benzene rings is 11.50 (2)°. The methoxy O atoms deviate by 0.0060 (2), −0.1319 (2) and 0.0426 (2) Å from the phenyl ring plane. The crystal packing features C—H⋯O hydrogen bonds, which link the molecules into C(11) chains propagating in [100xxx].
Related literature
For the biological activity of et al. (1999); Lin et al. (2002). For a related structure, see Ranjith et al. (2010).
see: Di CarloExperimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP 3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536812038226/bt6834sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812038226/bt6834Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536812038226/bt6834Isup3.cml
The iodo chalcone was prepared by condensation of 2-acetyl,5-iodo-thiophene (1 equiv) with 3,4,5-trimethoxybenzaldehyde (1 equiv) with 10% NaOH solution (10 mL) in ethyl alcohol (100 mL) stirred at room temperature for 12 h. The reaction mixture was poured into ice water (100 ml) and acidified with dilute HCl. The precipitated product was filtered and washed many times with water and dried to give the crude product. This was recrystallised in methyl alcohol to afford the pure iodo chalcone in dark brown colour. Yield: 82%
Hydrogen atoms were placed in calculated positions with Caromatic—H = 0.93 Å and Cmethyl—H = 0.96Å and refined using a riding model with Uiso(H) = 1.2 Ueq(C) or Uiso(H) = 1.5 Ueq(Cmethyl). The methyl groups were allowed to rotate but not to tip.
Chalcones are one of the major classes of natural products with widespread distribution in fruits, vegetables, spices, tea and soy based foodstuff and have recently been the subject of great interest because of their interesting pharmacological activities (Di Carlo et al., 1999).
and as anti-tuberculosis agents are also reported (Lin et al., 2002). Against this background and in order to obtain detailed information on molecular conformations in the solid state, an X-ray study of the title compound was carried out.In the title compound, the dihedral angle between the thiophene ring (S1/C13/C14/C15/C16) and the three methoxy substituted phenyl ring is 11.50 (2)°. The oxygen atoms O2, O3 & O4 attached with the phenyl ring (C4/C5/C6/C7/C8/C9) deviate by 0.0060 (2)Å, -0.1319 (2)Å and 0.0426 (2)Å, respectively. The iodine atom (I1) attached with the thiophene ring deviates by a value of -0.0195 (1)Å. The crystal packing is stabilized by intermolecular C–H···O hydrogen bonds.
For the biological activity of
see: Di Carlo et al. (1999); Lin et al. (2002). For related structures, see Ranjith et al. (2010).Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP 3 (Farrugia, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).C16H15IO4S | F(000) = 1696 |
Mr = 430.25 | Dx = 1.709 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 4092 reflections |
a = 17.2328 (12) Å | θ = 1.7–28.2° |
b = 8.1885 (6) Å | µ = 2.05 mm−1 |
c = 23.7049 (17) Å | T = 293 K |
V = 3345.0 (4) Å3 | Block, colourless |
Z = 8 | 0.30 × 0.25 × 0.20 mm |
Bruker APEXII area-detector diffractometer | 4092 independent reflections |
Radiation source: fine-focus sealed tube | 3263 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.020 |
ω and φ scans | θmax = 28.2°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | h = −22→12 |
Tmin = 0.578, Tmax = 0.684 | k = −8→10 |
17211 measured reflections | l = −25→31 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.025 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.062 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0255P)2 + 1.7451P] where P = (Fo2 + 2Fc2)/3 |
4092 reflections | (Δ/σ)max = 0.003 |
202 parameters | Δρmax = 0.45 e Å−3 |
0 restraints | Δρmin = −0.51 e Å−3 |
C16H15IO4S | V = 3345.0 (4) Å3 |
Mr = 430.25 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 17.2328 (12) Å | µ = 2.05 mm−1 |
b = 8.1885 (6) Å | T = 293 K |
c = 23.7049 (17) Å | 0.30 × 0.25 × 0.20 mm |
Bruker APEXII area-detector diffractometer | 4092 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 3263 reflections with I > 2σ(I) |
Tmin = 0.578, Tmax = 0.684 | Rint = 0.020 |
17211 measured reflections |
R[F2 > 2σ(F2)] = 0.025 | 0 restraints |
wR(F2) = 0.062 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.45 e Å−3 |
4092 reflections | Δρmin = −0.51 e Å−3 |
202 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
I1 | 0.772746 (8) | 0.12196 (2) | 0.038840 (8) | 0.04680 (7) | |
S1 | 0.58646 (3) | 0.18751 (8) | 0.02816 (2) | 0.04050 (13) | |
O3 | 0.06960 (10) | −0.0979 (2) | 0.24845 (7) | 0.0542 (5) | |
O2 | 0.21744 (11) | −0.1501 (3) | 0.27590 (8) | 0.0596 (5) | |
O1 | 0.41760 (9) | 0.2434 (2) | 0.02460 (7) | 0.0520 (4) | |
O4 | 0.02969 (9) | 0.0186 (3) | 0.14688 (8) | 0.0567 (5) | |
C8 | 0.24287 (13) | 0.0457 (3) | 0.13714 (9) | 0.0390 (5) | |
C13 | 0.51699 (12) | 0.1111 (3) | 0.07348 (9) | 0.0351 (5) | |
C5 | 0.12645 (14) | −0.0588 (3) | 0.21007 (9) | 0.0409 (5) | |
C4 | 0.10723 (13) | 0.0096 (3) | 0.15811 (10) | 0.0407 (5) | |
C10 | 0.30318 (13) | 0.1074 (3) | 0.09885 (10) | 0.0412 (5) | |
H10 | 0.2866 | 0.1721 | 0.0690 | 0.049* | |
C7 | 0.26207 (13) | −0.0265 (3) | 0.18831 (9) | 0.0417 (5) | |
H7 | 0.3139 | −0.0397 | 0.1982 | 0.050* | |
C15 | 0.63199 (13) | 0.0081 (3) | 0.10998 (10) | 0.0422 (5) | |
H15 | 0.6634 | −0.0502 | 0.1347 | 0.051* | |
C16 | 0.65890 (12) | 0.0932 (3) | 0.06498 (10) | 0.0363 (5) | |
C14 | 0.55074 (13) | 0.0186 (3) | 0.11476 (9) | 0.0402 (5) | |
H14 | 0.5227 | −0.0324 | 0.1433 | 0.048* | |
C6 | 0.20423 (15) | −0.0790 (3) | 0.22465 (9) | 0.0421 (5) | |
C9 | 0.16523 (13) | 0.0637 (3) | 0.12198 (10) | 0.0418 (5) | |
H9 | 0.1523 | 0.1118 | 0.0877 | 0.050* | |
C11 | 0.37838 (13) | 0.0804 (3) | 0.10249 (10) | 0.0425 (5) | |
H11 | 0.3963 | 0.0124 | 0.1311 | 0.051* | |
C12 | 0.43547 (13) | 0.1525 (3) | 0.06352 (10) | 0.0384 (5) | |
C3 | 0.00578 (16) | 0.0851 (4) | 0.09421 (12) | 0.0601 (7) | |
H3A | 0.0247 | 0.1949 | 0.0908 | 0.090* | |
H3B | −0.0499 | 0.0852 | 0.0922 | 0.090* | |
H3C | 0.0264 | 0.0199 | 0.0641 | 0.090* | |
C1 | 0.2956 (2) | −0.1641 (5) | 0.29405 (13) | 0.0774 (10) | |
H1A | 0.3240 | −0.2302 | 0.2678 | 0.116* | |
H1B | 0.2970 | −0.2141 | 0.3307 | 0.116* | |
H1C | 0.3186 | −0.0575 | 0.2960 | 0.116* | |
C2 | 0.0342 (2) | −0.2524 (4) | 0.24123 (16) | 0.0881 (12) | |
H2A | 0.0099 | −0.2572 | 0.2048 | 0.132* | |
H2B | −0.0041 | −0.2684 | 0.2701 | 0.132* | |
H2C | 0.0729 | −0.3363 | 0.2439 | 0.132* |
U11 | U22 | U33 | U12 | U13 | U23 | |
I1 | 0.02665 (9) | 0.04840 (11) | 0.06536 (12) | −0.00074 (6) | 0.00204 (7) | −0.00160 (8) |
S1 | 0.0274 (3) | 0.0511 (3) | 0.0430 (3) | −0.0001 (2) | 0.0009 (2) | 0.0131 (3) |
O3 | 0.0510 (10) | 0.0671 (12) | 0.0447 (9) | −0.0104 (9) | 0.0219 (8) | −0.0070 (9) |
O2 | 0.0588 (12) | 0.0806 (14) | 0.0393 (9) | 0.0107 (10) | 0.0099 (8) | 0.0124 (9) |
O1 | 0.0302 (8) | 0.0679 (11) | 0.0580 (10) | −0.0010 (8) | −0.0014 (7) | 0.0209 (9) |
O4 | 0.0311 (9) | 0.0854 (14) | 0.0537 (10) | −0.0024 (9) | 0.0062 (7) | 0.0030 (10) |
C8 | 0.0313 (11) | 0.0469 (14) | 0.0387 (11) | −0.0043 (10) | 0.0050 (9) | −0.0018 (11) |
C13 | 0.0301 (10) | 0.0406 (12) | 0.0347 (10) | −0.0029 (9) | 0.0028 (8) | 0.0021 (10) |
C5 | 0.0411 (12) | 0.0431 (12) | 0.0384 (11) | −0.0027 (10) | 0.0139 (10) | −0.0068 (10) |
C4 | 0.0324 (11) | 0.0482 (13) | 0.0413 (12) | −0.0019 (10) | 0.0072 (9) | −0.0078 (10) |
C10 | 0.0324 (11) | 0.0512 (14) | 0.0398 (12) | −0.0052 (10) | 0.0022 (9) | 0.0034 (11) |
C7 | 0.0333 (12) | 0.0531 (15) | 0.0388 (11) | 0.0007 (10) | 0.0037 (9) | −0.0032 (11) |
C15 | 0.0353 (12) | 0.0503 (14) | 0.0411 (12) | 0.0051 (10) | −0.0052 (9) | 0.0055 (11) |
C16 | 0.0263 (10) | 0.0400 (12) | 0.0425 (12) | 0.0002 (9) | −0.0035 (9) | −0.0044 (10) |
C14 | 0.0364 (12) | 0.0489 (14) | 0.0352 (11) | −0.0006 (10) | 0.0033 (9) | 0.0064 (10) |
C6 | 0.0490 (13) | 0.0455 (13) | 0.0318 (11) | 0.0042 (11) | 0.0071 (10) | −0.0035 (10) |
C9 | 0.0369 (12) | 0.0500 (13) | 0.0384 (12) | −0.0013 (10) | 0.0043 (9) | 0.0022 (11) |
C11 | 0.0340 (12) | 0.0531 (14) | 0.0404 (12) | −0.0008 (10) | 0.0033 (9) | 0.0054 (11) |
C12 | 0.0300 (11) | 0.0445 (13) | 0.0405 (11) | −0.0030 (9) | 0.0000 (9) | −0.0003 (10) |
C3 | 0.0392 (14) | 0.0727 (19) | 0.0684 (18) | 0.0050 (13) | −0.0044 (13) | 0.0029 (15) |
C1 | 0.070 (2) | 0.111 (3) | 0.0507 (16) | 0.024 (2) | 0.0007 (15) | 0.0221 (18) |
C2 | 0.099 (3) | 0.076 (2) | 0.089 (2) | −0.034 (2) | 0.044 (2) | −0.0086 (19) |
I1—C16 | 2.071 (2) | C10—H10 | 0.9300 |
S1—C16 | 1.708 (2) | C7—C6 | 1.386 (3) |
S1—C13 | 1.726 (2) | C7—H7 | 0.9300 |
O3—C5 | 1.375 (3) | C15—C16 | 1.356 (3) |
O3—C2 | 1.414 (3) | C15—C14 | 1.407 (3) |
O2—C6 | 1.366 (3) | C15—H15 | 0.9300 |
O2—C1 | 1.418 (4) | C14—H14 | 0.9300 |
O1—C12 | 1.225 (3) | C9—H9 | 0.9300 |
O4—C4 | 1.364 (3) | C11—C12 | 1.473 (3) |
O4—C3 | 1.423 (3) | C11—H11 | 0.9300 |
C8—C7 | 1.390 (3) | C3—H3A | 0.9600 |
C8—C9 | 1.393 (3) | C3—H3B | 0.9600 |
C8—C10 | 1.469 (3) | C3—H3C | 0.9600 |
C13—C14 | 1.367 (3) | C1—H1A | 0.9600 |
C13—C12 | 1.464 (3) | C1—H1B | 0.9600 |
C5—C4 | 1.393 (3) | C1—H1C | 0.9600 |
C5—C6 | 1.394 (4) | C2—H2A | 0.9600 |
C4—C9 | 1.389 (3) | C2—H2B | 0.9600 |
C10—C11 | 1.317 (3) | C2—H2C | 0.9600 |
C16—S1—C13 | 91.44 (11) | O2—C6—C7 | 124.4 (2) |
C5—O3—C2 | 115.8 (2) | O2—C6—C5 | 115.6 (2) |
C6—O2—C1 | 117.5 (2) | C7—C6—C5 | 120.0 (2) |
C4—O4—C3 | 118.39 (19) | C4—C9—C8 | 119.9 (2) |
C7—C8—C9 | 119.9 (2) | C4—C9—H9 | 120.1 |
C7—C8—C10 | 121.1 (2) | C8—C9—H9 | 120.1 |
C9—C8—C10 | 118.9 (2) | C10—C11—C12 | 123.3 (2) |
C14—C13—C12 | 130.7 (2) | C10—C11—H11 | 118.4 |
C14—C13—S1 | 110.55 (16) | C12—C11—H11 | 118.4 |
C12—C13—S1 | 118.78 (16) | O1—C12—C13 | 120.2 (2) |
O3—C5—C4 | 120.6 (2) | O1—C12—C11 | 123.2 (2) |
O3—C5—C6 | 119.6 (2) | C13—C12—C11 | 116.6 (2) |
C4—C5—C6 | 119.7 (2) | O4—C3—H3A | 109.5 |
O4—C4—C9 | 124.6 (2) | O4—C3—H3B | 109.5 |
O4—C4—C5 | 115.3 (2) | H3A—C3—H3B | 109.5 |
C9—C4—C5 | 120.2 (2) | O4—C3—H3C | 109.5 |
C11—C10—C8 | 126.7 (2) | H3A—C3—H3C | 109.5 |
C11—C10—H10 | 116.6 | H3B—C3—H3C | 109.5 |
C8—C10—H10 | 116.6 | O2—C1—H1A | 109.5 |
C6—C7—C8 | 120.2 (2) | O2—C1—H1B | 109.5 |
C6—C7—H7 | 119.9 | H1A—C1—H1B | 109.5 |
C8—C7—H7 | 119.9 | O2—C1—H1C | 109.5 |
C16—C15—C14 | 111.8 (2) | H1A—C1—H1C | 109.5 |
C16—C15—H15 | 124.1 | H1B—C1—H1C | 109.5 |
C14—C15—H15 | 124.1 | O3—C2—H2A | 109.5 |
C15—C16—S1 | 112.61 (17) | O3—C2—H2B | 109.5 |
C15—C16—I1 | 128.15 (17) | H2A—C2—H2B | 109.5 |
S1—C16—I1 | 119.23 (12) | O3—C2—H2C | 109.5 |
C13—C14—C15 | 113.6 (2) | H2A—C2—H2C | 109.5 |
C13—C14—H14 | 123.2 | H2B—C2—H2C | 109.5 |
C15—C14—H14 | 123.2 | ||
C16—S1—C13—C14 | 0.39 (18) | C16—C15—C14—C13 | 0.0 (3) |
C16—S1—C13—C12 | 179.91 (19) | C1—O2—C6—C7 | 3.0 (4) |
C2—O3—C5—C4 | 84.7 (3) | C1—O2—C6—C5 | −176.2 (3) |
C2—O3—C5—C6 | −99.0 (3) | C8—C7—C6—O2 | −179.5 (2) |
C3—O4—C4—C9 | 1.2 (4) | C8—C7—C6—C5 | −0.3 (4) |
C3—O4—C4—C5 | −179.1 (2) | O3—C5—C6—O2 | 5.0 (3) |
O3—C5—C4—O4 | −6.1 (3) | C4—C5—C6—O2 | −178.7 (2) |
C6—C5—C4—O4 | 177.6 (2) | O3—C5—C6—C7 | −174.3 (2) |
O3—C5—C4—C9 | 173.6 (2) | C4—C5—C6—C7 | 2.0 (4) |
C6—C5—C4—C9 | −2.7 (4) | O4—C4—C9—C8 | −178.7 (2) |
C7—C8—C10—C11 | 11.7 (4) | C5—C4—C9—C8 | 1.6 (4) |
C9—C8—C10—C11 | −169.6 (3) | C7—C8—C9—C4 | 0.2 (4) |
C9—C8—C7—C6 | −0.8 (4) | C10—C8—C9—C4 | −178.6 (2) |
C10—C8—C7—C6 | 177.9 (2) | C8—C10—C11—C12 | −177.4 (2) |
C14—C15—C16—S1 | 0.3 (3) | C14—C13—C12—O1 | 177.4 (2) |
C14—C15—C16—I1 | 179.10 (17) | S1—C13—C12—O1 | −2.1 (3) |
C13—S1—C16—C15 | −0.38 (19) | C14—C13—C12—C11 | −2.2 (4) |
C13—S1—C16—I1 | −179.33 (13) | S1—C13—C12—C11 | 178.35 (17) |
C12—C13—C14—C15 | −179.8 (2) | C10—C11—C12—O1 | 0.1 (4) |
S1—C13—C14—C15 | −0.3 (3) | C10—C11—C12—C13 | 179.6 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
C15—H15···O2i | 0.93 | 2.45 | 3.341 (3) | 159 |
Symmetry code: (i) x+1/2, y, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C16H15IO4S |
Mr | 430.25 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 293 |
a, b, c (Å) | 17.2328 (12), 8.1885 (6), 23.7049 (17) |
V (Å3) | 3345.0 (4) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 2.05 |
Crystal size (mm) | 0.30 × 0.25 × 0.20 |
Data collection | |
Diffractometer | Bruker APEXII area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2008) |
Tmin, Tmax | 0.578, 0.684 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 17211, 4092, 3263 |
Rint | 0.020 |
(sin θ/λ)max (Å−1) | 0.666 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.025, 0.062, 1.06 |
No. of reflections | 4092 |
No. of parameters | 202 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.45, −0.51 |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SHELXS97 (Sheldrick, 2008), ORTEP 3 (Farrugia, 1997), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C15—H15···O2i | 0.93 | 2.45 | 3.341 (3) | 159.4 |
Symmetry code: (i) x+1/2, y, −z+1/2. |
Acknowledgements
The authors thank the TBI X-ray facility, CAS in Crystallography and Biophysics, University of Madras, India, for the data collection and TS thanks the DST for an Inspire fellowship.
References
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Chalcones are one of the major classes of natural products with widespread distribution in fruits, vegetables, spices, tea and soy based foodstuff and have recently been the subject of great interest because of their interesting pharmacological activities (Di Carlo et al., 1999). Chalcones and flavonoids as anti-tuberculosis agents are also reported (Lin et al., 2002). Against this background and in order to obtain detailed information on molecular conformations in the solid state, an X-ray study of the title compound was carried out.
In the title compound, the dihedral angle between the thiophene ring (S1/C13/C14/C15/C16) and the three methoxy substituted phenyl ring is 11.50 (2)°. The oxygen atoms O2, O3 & O4 attached with the phenyl ring (C4/C5/C6/C7/C8/C9) deviate by 0.0060 (2)Å, -0.1319 (2)Å and 0.0426 (2)Å, respectively. The iodine atom (I1) attached with the thiophene ring deviates by a value of -0.0195 (1)Å. The crystal packing is stabilized by intermolecular C–H···O hydrogen bonds.