organic compounds
(E)-1-[4-(Hexyloxy)phenyl]-3-(2-hydroxyphenyl)prop-2-en-1-one
aDepartment of Chemistry, Faculty of Resource Science and Technology, Universiti Malaysia Sarawak, 94300 Kota Samarahan, Sarawak, Malaysia, bDepartment of Molecular Biology, Faculty of Resource Science and Technology, Universiti Malaysia Sarawak, 94300 Kota Samarahan, Sarawak, Malaysia, and cSchool of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: arazaki@usm.my
In the title compound, C21H24O3, the enone moiety adopts an s-cis conformation and the dihedral angle between the benzene rings is 12.89 (6)°. The hexyloxy tail adopts an extended conformation. In the crystal, inversion dimers are linked by pairs of O—H⋯O hydrogen bonds and pairs of C—H⋯O interactions, forming two R22(7) and one R22(10) loops. The dimers are then arranged into sheets lying parallel to (201) and weak C—H⋯π interactions consolidate the packing.
Related literature
For a related structure and background to the biological properties of et al. (2011). For related structures, see: Razak et al. (2009); Ngaini et al. (2010). For graph-set theory, see: Bernstein et al. (1995). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
see: NgainiExperimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536812038007/hb6948sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812038007/hb6948Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536812038007/hb6948Isup3.cml
A mixture of 2-hydroxybenzaldehyde (1.46 ml, 12 mmol), and 4-hexyloxyacetophenone (2.64 g, 12 mmol) and KOH (2.42 g, 43 mmol) in methanol (50 ml) was heated at reflux for 24 h. The reaction was cooled to room temperature and acidified with cold diluted HCl (2N). The resulting precipitate was filtered, washed and dried. After redissolving in hexane-ethanol (7:1) followed by few days of slow evaporation, yellow blocks were collected.
The O-bound H atom was located in a difference Fourier map and refined freely with O–H = 0.94 (2) Å. The remaining H atoms were placed in calculated positions with C–H = 0.93–0.97 Å. The Uiso values were constrained to be 1.5Ueq (methyl-H atom) and 1.2Ueq (other H atoms). The rotating model group was applied for the methyl group.
As part of our ongoing studies of the biological activities of chalcone derivatives (Ngaini et al., 2011), the title compound has been synthesised and tested against E. coli ATCC 8739 and showed anti-microbial activity. We now describe its crystal structure.
In the title of chalcone derivative, Fig. 1, the conformation of the enone (O1/C7–C8) moiety is s-cis with the C7–C8–C9–o1 torsion angle being 0.89 (18)°. The least-square plane through enone moeity make dihedral angles of 7.57 (7)° and 8.18 (7)° with (C10–C15 and C1–C6) benzene rings, respectively. The dihedral angle between the two benzene rings is 12.89 (6)°.
The widening of C9–C10–C15, C6–C7–C8 and C1–C6–C7 angles to 123.98 (10)°, 126.08 (10)° and 123.26 (10) respectively, are the consequences of the short contact between H15A and H8A (2.075 Å) as well as H8A and H1A (2.214 Å). Likewise, the slight opening of O3–C13–C14 to 125.30 (10)° is the result of the strain induced by close H14A···H16A (2.253 Å) interatomic contact. Similar features were also observed in closely related structures (Razak et al., 2009; Ngaini et al., 2010; Ngaini et al., 2011).
The zigzag alkoxyl tail is assumed as a
conformation. The torsion angle C16–O3–C13–C14 of 2.51 (16)° implies that the alkoxyl tail is roughly co-planar with the attached benzene ring. However, it is actually twisted away from planarity as shown by the torsion angle of 166.42 (9)° for C13–O3–C16–C17. The twist about C17–C18 bond is indicated by C16–C17–C18–C19 torsion angle of 173.51 (9)°.In the crystal packing of (Fig. 2), the molecules are connected by intermolecular interactions O2—H1O2···O1 and C7—H7A···O2 hydrogen bonds to form two R22(7) and one R22(10) rings motif which linked the molecules into pairs which are then arranged into sheets parallel to (201) plane. Furthermore, the crystal packing features weak C—H···π interactions (Table 1) with the distance of 3.6117 (16) Å.
For a related structure and background to the biological properties of
see: Ngaini et al. (2011). For related structures, see: Razak et al. (2009); Ngaini et al. (2010). For graph-set theory, see: Bernstein et al. (1995). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C21H24O3 | Z = 2 |
Mr = 324.40 | F(000) = 348 |
Triclinic, P1 | Dx = 1.231 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.485 (2) Å | Cell parameters from 6758 reflections |
b = 10.834 (3) Å | θ = 2.4–31.7° |
c = 11.673 (3) Å | µ = 0.08 mm−1 |
α = 73.858 (5)° | T = 100 K |
β = 77.961 (6)° | Block, yellow |
γ = 76.941 (6)° | 0.47 × 0.14 × 0.12 mm |
V = 874.9 (4) Å3 |
Bruker APEX DUO CCD diffractometer | 4576 independent reflections |
Radiation source: fine-focus sealed tube | 3781 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.026 |
φ and ω scans | θmax = 29.0°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −10→10 |
Tmin = 0.963, Tmax = 0.991 | k = −14→14 |
17565 measured reflections | l = −15→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.133 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | w = 1/[σ2(Fo2) + (0.077P)2 + 0.2082P] where P = (Fo2 + 2Fc2)/3 |
4576 reflections | (Δ/σ)max < 0.001 |
222 parameters | Δρmax = 0.39 e Å−3 |
0 restraints | Δρmin = −0.23 e Å−3 |
C21H24O3 | γ = 76.941 (6)° |
Mr = 324.40 | V = 874.9 (4) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.485 (2) Å | Mo Kα radiation |
b = 10.834 (3) Å | µ = 0.08 mm−1 |
c = 11.673 (3) Å | T = 100 K |
α = 73.858 (5)° | 0.47 × 0.14 × 0.12 mm |
β = 77.961 (6)° |
Bruker APEX DUO CCD diffractometer | 4576 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 3781 reflections with I > 2σ(I) |
Tmin = 0.963, Tmax = 0.991 | Rint = 0.026 |
17565 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | 0 restraints |
wR(F2) = 0.133 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.02 | Δρmax = 0.39 e Å−3 |
4576 reflections | Δρmin = −0.23 e Å−3 |
222 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.10199 (12) | 0.82681 (7) | 0.77465 (7) | 0.02537 (19) | |
O2 | 0.05000 (12) | 1.13926 (7) | 1.00412 (7) | 0.02580 (19) | |
O3 | 0.26974 (11) | 0.74559 (8) | 0.24879 (7) | 0.02478 (19) | |
C1 | 0.23994 (15) | 1.29725 (10) | 0.70042 (10) | 0.0229 (2) | |
H1A | 0.2848 | 1.2773 | 0.6260 | 0.027* | |
C2 | 0.24424 (16) | 1.41983 (11) | 0.71304 (11) | 0.0261 (2) | |
H2A | 0.2922 | 1.4812 | 0.6477 | 0.031* | |
C3 | 0.17661 (16) | 1.45074 (10) | 0.82374 (11) | 0.0256 (2) | |
H3A | 0.1763 | 1.5338 | 0.8318 | 0.031* | |
C4 | 0.10963 (15) | 1.35851 (10) | 0.92229 (10) | 0.0232 (2) | |
H4A | 0.0655 | 1.3794 | 0.9964 | 0.028* | |
C5 | 0.10858 (14) | 1.23422 (10) | 0.91002 (10) | 0.0198 (2) | |
C6 | 0.16962 (14) | 1.20282 (10) | 0.79729 (10) | 0.0194 (2) | |
C7 | 0.15502 (14) | 1.07449 (10) | 0.78689 (10) | 0.0205 (2) | |
H7A | 0.1211 | 1.0145 | 0.8581 | 0.025* | |
C8 | 0.18600 (15) | 1.03496 (10) | 0.68408 (10) | 0.0226 (2) | |
H8A | 0.2266 | 1.0912 | 0.6119 | 0.027* | |
C9 | 0.15789 (14) | 0.90539 (10) | 0.68181 (10) | 0.0201 (2) | |
C10 | 0.19366 (14) | 0.86986 (10) | 0.56431 (10) | 0.0199 (2) | |
C11 | 0.14263 (15) | 0.75378 (10) | 0.56113 (10) | 0.0223 (2) | |
H11A | 0.0896 | 0.7018 | 0.6320 | 0.027* | |
C12 | 0.17005 (15) | 0.71606 (11) | 0.45458 (10) | 0.0239 (2) | |
H12A | 0.1349 | 0.6392 | 0.4541 | 0.029* | |
C13 | 0.25034 (14) | 0.79245 (10) | 0.34708 (10) | 0.0213 (2) | |
C14 | 0.30205 (15) | 0.90824 (11) | 0.34783 (10) | 0.0235 (2) | |
H14A | 0.3550 | 0.9600 | 0.2767 | 0.028* | |
C15 | 0.27332 (15) | 0.94525 (10) | 0.45625 (10) | 0.0232 (2) | |
H15A | 0.3082 | 1.0222 | 0.4567 | 0.028* | |
C16 | 0.35636 (15) | 0.81399 (11) | 0.13354 (10) | 0.0226 (2) | |
H16A | 0.4699 | 0.8376 | 0.1415 | 0.027* | |
H16B | 0.2734 | 0.8929 | 0.1006 | 0.027* | |
C17 | 0.39770 (15) | 0.72005 (10) | 0.05308 (10) | 0.0225 (2) | |
H17A | 0.2820 | 0.6985 | 0.0464 | 0.027* | |
H17B | 0.4742 | 0.6400 | 0.0907 | 0.027* | |
C18 | 0.49635 (15) | 0.77343 (11) | −0.07282 (10) | 0.0227 (2) | |
H18A | 0.6055 | 0.8039 | −0.0667 | 0.027* | |
H18B | 0.4144 | 0.8473 | −0.1147 | 0.027* | |
C19 | 0.55427 (16) | 0.66941 (11) | −0.14528 (10) | 0.0243 (2) | |
H19A | 0.6362 | 0.5961 | −0.1027 | 0.029* | |
H19B | 0.4446 | 0.6381 | −0.1491 | 0.029* | |
C20 | 0.65178 (16) | 0.71628 (12) | −0.27296 (10) | 0.0275 (2) | |
H20A | 0.7597 | 0.7501 | −0.2699 | 0.033* | |
H20B | 0.5685 | 0.7871 | −0.3171 | 0.033* | |
C21 | 0.7131 (2) | 0.60782 (14) | −0.34014 (12) | 0.0375 (3) | |
H21A | 0.7817 | 0.6400 | −0.4180 | 0.056* | |
H21B | 0.6058 | 0.5795 | −0.3500 | 0.056* | |
H21C | 0.7904 | 0.5356 | −0.2947 | 0.056* | |
H1O2 | 0.001 (3) | 1.1676 (18) | 1.0758 (18) | 0.058 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0357 (4) | 0.0204 (4) | 0.0196 (4) | −0.0082 (3) | −0.0005 (3) | −0.0046 (3) |
O2 | 0.0370 (4) | 0.0201 (4) | 0.0197 (4) | −0.0094 (3) | 0.0018 (3) | −0.0052 (3) |
O3 | 0.0294 (4) | 0.0283 (4) | 0.0181 (4) | −0.0101 (3) | 0.0017 (3) | −0.0081 (3) |
C1 | 0.0254 (5) | 0.0209 (5) | 0.0214 (5) | −0.0045 (4) | −0.0036 (4) | −0.0033 (4) |
C2 | 0.0300 (5) | 0.0200 (5) | 0.0266 (6) | −0.0080 (4) | −0.0036 (4) | −0.0009 (4) |
C3 | 0.0291 (5) | 0.0180 (5) | 0.0315 (6) | −0.0062 (4) | −0.0065 (4) | −0.0058 (4) |
C4 | 0.0258 (5) | 0.0209 (5) | 0.0252 (6) | −0.0040 (4) | −0.0051 (4) | −0.0084 (4) |
C5 | 0.0207 (5) | 0.0183 (5) | 0.0203 (5) | −0.0048 (4) | −0.0036 (4) | −0.0032 (4) |
C6 | 0.0200 (4) | 0.0173 (4) | 0.0211 (5) | −0.0030 (4) | −0.0041 (4) | −0.0043 (4) |
C7 | 0.0226 (5) | 0.0164 (4) | 0.0220 (5) | −0.0038 (4) | −0.0032 (4) | −0.0038 (4) |
C8 | 0.0285 (5) | 0.0184 (5) | 0.0205 (5) | −0.0052 (4) | −0.0037 (4) | −0.0035 (4) |
C9 | 0.0214 (5) | 0.0184 (5) | 0.0198 (5) | −0.0023 (4) | −0.0028 (4) | −0.0048 (4) |
C10 | 0.0214 (5) | 0.0179 (5) | 0.0197 (5) | −0.0018 (4) | −0.0027 (4) | −0.0051 (4) |
C11 | 0.0267 (5) | 0.0193 (5) | 0.0193 (5) | −0.0054 (4) | −0.0006 (4) | −0.0035 (4) |
C12 | 0.0274 (5) | 0.0218 (5) | 0.0239 (6) | −0.0078 (4) | −0.0007 (4) | −0.0074 (4) |
C13 | 0.0209 (5) | 0.0234 (5) | 0.0197 (5) | −0.0022 (4) | −0.0028 (4) | −0.0073 (4) |
C14 | 0.0279 (5) | 0.0222 (5) | 0.0194 (5) | −0.0076 (4) | 0.0000 (4) | −0.0036 (4) |
C15 | 0.0276 (5) | 0.0201 (5) | 0.0220 (5) | −0.0073 (4) | −0.0013 (4) | −0.0051 (4) |
C16 | 0.0236 (5) | 0.0263 (5) | 0.0168 (5) | −0.0056 (4) | −0.0002 (4) | −0.0047 (4) |
C17 | 0.0227 (5) | 0.0238 (5) | 0.0205 (5) | −0.0028 (4) | −0.0022 (4) | −0.0064 (4) |
C18 | 0.0241 (5) | 0.0233 (5) | 0.0198 (5) | −0.0029 (4) | −0.0039 (4) | −0.0044 (4) |
C19 | 0.0287 (5) | 0.0251 (5) | 0.0192 (5) | −0.0080 (4) | −0.0010 (4) | −0.0052 (4) |
C20 | 0.0303 (6) | 0.0317 (6) | 0.0202 (5) | −0.0099 (5) | −0.0004 (4) | −0.0049 (4) |
C21 | 0.0431 (7) | 0.0501 (8) | 0.0255 (6) | −0.0195 (6) | 0.0053 (5) | −0.0180 (6) |
O1—C9 | 1.2382 (13) | C12—C13 | 1.3976 (15) |
O2—C5 | 1.3534 (13) | C12—H12A | 0.9300 |
O2—H1O2 | 0.94 (2) | C13—C14 | 1.3967 (15) |
O3—C13 | 1.3477 (13) | C14—C15 | 1.3922 (15) |
O3—C16 | 1.4416 (13) | C14—H14A | 0.9300 |
C1—C2 | 1.3844 (15) | C15—H15A | 0.9300 |
C1—C6 | 1.3978 (15) | C16—C17 | 1.5106 (15) |
C1—H1A | 0.9300 | C16—H16A | 0.9700 |
C2—C3 | 1.3891 (17) | C16—H16B | 0.9700 |
C2—H2A | 0.9300 | C17—C18 | 1.5189 (16) |
C3—C4 | 1.3856 (16) | C17—H17A | 0.9700 |
C3—H3A | 0.9300 | C17—H17B | 0.9700 |
C4—C5 | 1.3951 (14) | C18—C19 | 1.5263 (15) |
C4—H4A | 0.9300 | C18—H18A | 0.9700 |
C5—C6 | 1.4086 (15) | C18—H18B | 0.9700 |
C6—C7 | 1.4587 (14) | C19—C20 | 1.5181 (16) |
C7—C8 | 1.3424 (15) | C19—H19A | 0.9700 |
C7—H7A | 0.9300 | C19—H19B | 0.9700 |
C8—C9 | 1.4738 (14) | C20—C21 | 1.5247 (17) |
C8—H8A | 0.9300 | C20—H20A | 0.9700 |
C9—C10 | 1.4815 (15) | C20—H20B | 0.9700 |
C10—C15 | 1.3953 (15) | C21—H21A | 0.9600 |
C10—C11 | 1.4064 (14) | C21—H21B | 0.9600 |
C11—C12 | 1.3763 (15) | C21—H21C | 0.9600 |
C11—H11A | 0.9300 | ||
C5—O2—H1O2 | 113.6 (11) | C15—C14—H14A | 120.4 |
C13—O3—C16 | 119.91 (8) | C13—C14—H14A | 120.4 |
C2—C1—C6 | 121.38 (11) | C14—C15—C10 | 121.74 (10) |
C2—C1—H1A | 119.3 | C14—C15—H15A | 119.1 |
C6—C1—H1A | 119.3 | C10—C15—H15A | 119.1 |
C1—C2—C3 | 119.72 (10) | O3—C16—C17 | 105.61 (9) |
C1—C2—H2A | 120.1 | O3—C16—H16A | 110.6 |
C3—C2—H2A | 120.1 | C17—C16—H16A | 110.6 |
C4—C3—C2 | 120.39 (10) | O3—C16—H16B | 110.6 |
C4—C3—H3A | 119.8 | C17—C16—H16B | 110.6 |
C2—C3—H3A | 119.8 | H16A—C16—H16B | 108.7 |
C3—C4—C5 | 119.82 (10) | C16—C17—C18 | 113.53 (9) |
C3—C4—H4A | 120.1 | C16—C17—H17A | 108.9 |
C5—C4—H4A | 120.1 | C18—C17—H17A | 108.9 |
O2—C5—C4 | 122.26 (10) | C16—C17—H17B | 108.9 |
O2—C5—C6 | 117.18 (9) | C18—C17—H17B | 108.9 |
C4—C5—C6 | 120.56 (10) | H17A—C17—H17B | 107.7 |
C1—C6—C5 | 118.05 (9) | C17—C18—C19 | 111.28 (9) |
C1—C6—C7 | 123.26 (10) | C17—C18—H18A | 109.4 |
C5—C6—C7 | 118.68 (9) | C19—C18—H18A | 109.4 |
C8—C7—C6 | 126.09 (10) | C17—C18—H18B | 109.4 |
C8—C7—H7A | 117.0 | C19—C18—H18B | 109.4 |
C6—C7—H7A | 117.0 | H18A—C18—H18B | 108.0 |
C7—C8—C9 | 122.19 (10) | C20—C19—C18 | 114.28 (9) |
C7—C8—H8A | 118.9 | C20—C19—H19A | 108.7 |
C9—C8—H8A | 118.9 | C18—C19—H19A | 108.7 |
O1—C9—C8 | 121.95 (10) | C20—C19—H19B | 108.7 |
O1—C9—C10 | 119.27 (9) | C18—C19—H19B | 108.7 |
C8—C9—C10 | 118.76 (9) | H19A—C19—H19B | 107.6 |
C15—C10—C11 | 117.94 (10) | C19—C20—C21 | 112.35 (10) |
C15—C10—C9 | 123.98 (9) | C19—C20—H20A | 109.1 |
C11—C10—C9 | 118.07 (9) | C21—C20—H20A | 109.1 |
C12—C11—C10 | 120.94 (10) | C19—C20—H20B | 109.1 |
C12—C11—H11A | 119.5 | C21—C20—H20B | 109.1 |
C10—C11—H11A | 119.5 | H20A—C20—H20B | 107.9 |
C11—C12—C13 | 120.47 (10) | C20—C21—H21A | 109.5 |
C11—C12—H12A | 119.8 | C20—C21—H21B | 109.5 |
C13—C12—H12A | 119.8 | H21A—C21—H21B | 109.5 |
O3—C13—C14 | 125.30 (10) | C20—C21—H21C | 109.5 |
O3—C13—C12 | 115.01 (9) | H21A—C21—H21C | 109.5 |
C14—C13—C12 | 119.69 (10) | H21B—C21—H21C | 109.5 |
C15—C14—C13 | 119.22 (10) | ||
C6—C1—C2—C3 | −0.37 (17) | C8—C9—C10—C11 | −171.57 (9) |
C1—C2—C3—C4 | 1.75 (17) | C15—C10—C11—C12 | −0.18 (16) |
C2—C3—C4—C5 | −0.56 (16) | C9—C10—C11—C12 | 179.21 (9) |
C3—C4—C5—O2 | 177.95 (9) | C10—C11—C12—C13 | 0.31 (17) |
C3—C4—C5—C6 | −2.02 (16) | C16—O3—C13—C14 | 2.51 (16) |
C2—C1—C6—C5 | −2.13 (16) | C16—O3—C13—C12 | −178.00 (9) |
C2—C1—C6—C7 | 177.29 (10) | C11—C12—C13—O3 | −179.89 (9) |
O2—C5—C6—C1 | −176.65 (9) | C11—C12—C13—C14 | −0.37 (16) |
C4—C5—C6—C1 | 3.32 (15) | O3—C13—C14—C15 | 179.78 (10) |
O2—C5—C6—C7 | 3.90 (14) | C12—C13—C14—C15 | 0.31 (16) |
C4—C5—C6—C7 | −176.13 (9) | C13—C14—C15—C10 | −0.19 (17) |
C1—C6—C7—C8 | −7.76 (17) | C11—C10—C15—C14 | 0.12 (16) |
C5—C6—C7—C8 | 171.66 (10) | C9—C10—C15—C14 | −179.23 (10) |
C6—C7—C8—C9 | −176.61 (9) | C13—O3—C16—C17 | 166.42 (9) |
C7—C8—C9—O1 | 0.88 (17) | O3—C16—C17—C18 | −178.07 (8) |
C7—C8—C9—C10 | 179.45 (10) | C16—C17—C18—C19 | 173.51 (9) |
O1—C9—C10—C15 | −173.62 (10) | C17—C18—C19—C20 | 179.26 (9) |
C8—C9—C10—C15 | 7.77 (15) | C18—C19—C20—C21 | 177.93 (10) |
O1—C9—C10—C11 | 7.04 (15) |
Cg1 is the centroid of the C1–C6 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H1O2···O1i | 0.94 (2) | 1.78 (2) | 2.6862 (15) | 163.3 (19) |
C7—H7A···O2i | 0.93 | 2.37 | 3.2526 (18) | 158 |
C16—H16A···Cg1ii | 0.97 | 2.91 | 3.6117 (16) | 130 |
Symmetry codes: (i) −x, −y+2, −z+2; (ii) −x+1, −y+2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C21H24O3 |
Mr | 324.40 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 7.485 (2), 10.834 (3), 11.673 (3) |
α, β, γ (°) | 73.858 (5), 77.961 (6), 76.941 (6) |
V (Å3) | 874.9 (4) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.47 × 0.14 × 0.12 |
Data collection | |
Diffractometer | Bruker APEX DUO CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.963, 0.991 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 17565, 4576, 3781 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.682 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.133, 1.02 |
No. of reflections | 4576 |
No. of parameters | 222 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.39, −0.23 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
Cg1 is the centroid of the C1–C6 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H1O2···O1i | 0.94 (2) | 1.78 (2) | 2.6862 (15) | 163.3 (19) |
C7—H7A···O2i | 0.93 | 2.37 | 3.2526 (18) | 158 |
C16—H16A···Cg1ii | 0.97 | 2.91 | 3.6117 (16) | 130 |
Symmetry codes: (i) −x, −y+2, −z+2; (ii) −x+1, −y+2, −z+1. |
Footnotes
‡Thomson Reuters ResearcherID: A-5599-2009.
Acknowledgements
IAR and SIJA thank the Malaysian Government and Universiti Sains Malaysia for the Fundamental Research Grant Scheme (FRGS) No. 203/PFIZIK/6711171. ZN and HH thank Universiti Malaysia Sarawak and the Ministry of Science, Technology and Innovation (MOSTI), for financing this project through FRGS/01(14)/743/2010 (29). SMHF thank the Malaysian Government and Universiti Malaysia Sarawak for providing a scholarship for postgraduate studies.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
As part of our ongoing studies of the biological activities of chalcone derivatives (Ngaini et al., 2011), the title compound has been synthesised and tested against E. coli ATCC 8739 and showed anti-microbial activity. We now describe its crystal structure.
In the title of chalcone derivative, Fig. 1, the conformation of the enone (O1/C7–C8) moiety is s-cis with the C7–C8–C9–o1 torsion angle being 0.89 (18)°. The least-square plane through enone moeity make dihedral angles of 7.57 (7)° and 8.18 (7)° with (C10–C15 and C1–C6) benzene rings, respectively. The dihedral angle between the two benzene rings is 12.89 (6)°.
The widening of C9–C10–C15, C6–C7–C8 and C1–C6–C7 angles to 123.98 (10)°, 126.08 (10)° and 123.26 (10) respectively, are the consequences of the short contact between H15A and H8A (2.075 Å) as well as H8A and H1A (2.214 Å). Likewise, the slight opening of O3–C13–C14 to 125.30 (10)° is the result of the strain induced by close H14A···H16A (2.253 Å) interatomic contact. Similar features were also observed in closely related structures (Razak et al., 2009; Ngaini et al., 2010; Ngaini et al., 2011).
The zigzag alkoxyl tail is assumed as a trans conformation. The torsion angle C16–O3–C13–C14 of 2.51 (16)° implies that the alkoxyl tail is roughly co-planar with the attached benzene ring. However, it is actually twisted away from planarity as shown by the torsion angle of 166.42 (9)° for C13–O3–C16–C17. The twist about C17–C18 bond is indicated by C16–C17–C18–C19 torsion angle of 173.51 (9)°.
In the crystal packing of (Fig. 2), the molecules are connected by intermolecular interactions O2—H1O2···O1 and C7—H7A···O2 hydrogen bonds to form two R22(7) and one R22(10) rings motif which linked the molecules into pairs which are then arranged into sheets parallel to (201) plane. Furthermore, the crystal packing features weak C—H···π interactions (Table 1) with the distance of 3.6117 (16) Å.